HHsearch alignment for GI: 254780810 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.04 E-value=0.036 Score=33.37 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=24.8
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
T Consensus 16 l~i~~Ge~~~iiG~nGsGKSTLl~~~~~ 43 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 7888998999999999989999998887