HHsearch alignment for GI: 254780810 and conserved domain: cd03245
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.95 E-value=0.017 Score=35.48 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=26.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
T Consensus 25 l~i~~G~~v~ivG~sGsGKSTLl~ll~gl~ 54 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 998799999999999985999999996725