HHsearch alignment for GI: 254780810 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.015 Score=35.81 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=26.5
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
T Consensus 23 l~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 23 LDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 998799999999899982999999996676