HHsearch alignment for GI: 254780810 and conserved domain: cd03255
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.31 E-value=0.012 Score=36.65 Aligned_cols=65 Identities=23% Similarity=0.254 Sum_probs=38.9
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHHCCEEE
Q ss_conf 88655102312220487787899999999998611886469999-508787899999984034278
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSVQGEVI 231 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~~~~vv 231 (423)
T Consensus 23 isl~i~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~~Ig~v~ 88 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVF 88 (218)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCEEEEC
T ss_conf 289986998999999999869999999966999996499999999887998999998650478986