HHsearch alignment for GI: 254780810 and conserved domain: cd03264
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.17 E-value=0.047 Score=32.61 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=32.4
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf 65510231222048778789999999999861188646999950878789999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTD 221 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e 221 (423)
T Consensus 21 ~~i~~G-i~gllGpNGAGKSTll~~i~Gl~~p~sG~i~i~g~~~~~~~~~~~~ 72 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred EEECCC-EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHHH
T ss_conf 688897-5999999982399999999759668962999999996618898973