HHsearch alignment for GI: 254780810 and conserved domain: cd03298
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.0076 Score=37.84 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=26.1
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
T Consensus 19 l~i~~Ge~~~ilGpSGsGKSTLl~li~Gl 47 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89889989999999995599999999769