Query gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 423
No_of_seqs 224 out of 1857
Neff 5.5
Searched_HMMs 39220
Date Sun May 29 18:23:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780810.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09376 rho transcription ter 100.0 0 0 1017.4 37.0 416 3-421 1-416 (416)
2 COG1158 Rho Transcription term 100.0 0 0 1006.4 36.2 422 1-423 1-422 (422)
3 PRK12678 transcription termina 100.0 0 0 936.4 34.4 366 51-422 288-659 (667)
4 PRK12608 transcription termina 100.0 0 0 934.9 34.3 378 37-420 1-378 (379)
5 TIGR02545 ATP_syn_fliI flagell 100.0 0 0 759.8 19.5 355 56-419 28-407 (439)
6 TIGR02546 III_secr_ATP type II 100.0 0 0 754.1 17.5 354 54-420 25-399 (430)
7 TIGR01026 fliI_yscN ATPase Fli 100.0 0 0 733.1 11.3 371 39-421 28-425 (455)
8 COG1157 FliI Flagellar biosynt 100.0 0 0 662.5 17.8 328 73-410 62-397 (441)
9 TIGR00767 rho transcription te 100.0 0 0 618.1 27.4 418 4-421 1-420 (420)
10 TIGR00962 atpA ATP synthase F1 100.0 0 0 627.7 15.3 398 11-418 1-440 (520)
11 PRK05688 fliI flagellum-specif 100.0 0 0 610.6 18.0 326 73-403 67-401 (451)
12 PRK06936 type III secretion sy 100.0 0 0 609.0 16.4 323 74-402 62-392 (439)
13 PRK07594 type III secretion sy 100.0 0 0 608.2 16.9 322 74-402 56-385 (433)
14 PRK09099 type III secretion sy 100.0 0 0 606.3 15.6 364 26-402 16-393 (441)
15 PRK06793 fliI flagellum-specif 100.0 0 0 602.4 18.3 356 38-404 19-387 (432)
16 PRK08927 fliI flagellum-specif 100.0 0 0 596.4 22.8 326 73-403 56-390 (441)
17 PRK08972 fliI flagellum-specif 100.0 0 0 597.0 21.9 325 74-403 60-393 (440)
18 cd01128 rho_factor Transcripti 100.0 0 0 593.8 24.2 249 159-407 1-249 (249)
19 TIGR03324 alt_F1F0_F1_al alter 100.0 0 0 596.2 21.9 397 8-418 3-422 (497)
20 PRK08472 fliI flagellum-specif 100.0 0 0 596.7 20.5 356 41-403 20-389 (435)
21 PRK06315 type III secretion sy 100.0 0 0 599.5 16.2 325 74-403 61-396 (442)
22 CHL00059 atpA ATP synthase CF1 100.0 0 0 592.9 21.2 397 12-418 4-423 (501)
23 PRK07721 fliI flagellum-specif 100.0 0 0 596.9 17.4 325 74-404 56-388 (435)
24 TIGR03496 FliI_clade1 flagella 100.0 0 0 587.3 22.3 326 74-404 37-371 (411)
25 PRK07960 fliI flagellum-specif 100.0 0 0 596.0 15.5 372 27-403 20-408 (455)
26 TIGR03498 FliI_clade3 flagella 100.0 0 0 584.3 23.5 325 74-403 39-373 (418)
27 PRK09281 F0F1 ATP synthase sub 100.0 0 0 584.4 22.9 397 12-418 3-422 (502)
28 PRK06820 type III secretion sy 100.0 0 0 592.7 16.3 322 74-402 64-393 (445)
29 PRK06002 fliI flagellum-specif 100.0 0 0 580.3 24.6 354 40-403 26-397 (450)
30 PRK13343 F0F1 ATP synthase sub 100.0 0 0 587.5 18.8 396 13-418 4-422 (502)
31 PRK08149 ATP synthase SpaL; Va 100.0 0 0 580.8 21.9 323 74-402 47-380 (427)
32 PRK07196 fliI flagellum-specif 100.0 0 0 586.3 16.6 324 74-402 55-386 (434)
33 TIGR03497 FliI_clade2 flagella 100.0 0 0 575.5 22.9 325 74-404 37-369 (413)
34 PRK09280 F0F1 ATP synthase sub 100.0 0 0 569.9 22.7 321 80-403 51-381 (466)
35 cd01136 ATPase_flagellum-secre 100.0 0 0 568.0 20.7 291 106-402 1-299 (326)
36 PRK12597 F0F1 ATP synthase sub 100.0 0 0 566.4 21.6 321 79-402 46-376 (459)
37 CHL00060 atpB ATP synthase CF1 100.0 0 0 560.5 23.8 321 80-403 61-398 (480)
38 TIGR03305 alt_F1F0_F1_bet alte 100.0 0 0 563.1 21.4 324 76-402 40-373 (449)
39 PRK05922 type III secretion sy 100.0 0 0 560.4 14.8 352 41-403 20-386 (434)
40 PRK04196 V-type ATP synthase s 100.0 0 0 517.3 21.2 329 74-403 42-388 (460)
41 cd01133 F1-ATPase_beta F1 ATP 100.0 0 0 510.2 18.0 264 106-372 1-273 (274)
42 cd01135 V_A-ATPase_B V/A-type 100.0 0 0 508.9 17.9 263 107-370 2-276 (276)
43 cd01132 F1_ATPase_alpha F1 ATP 100.0 0 0 508.3 16.7 262 107-371 2-274 (274)
44 COG0056 AtpA F0F1-type ATP syn 100.0 0 0 499.5 21.6 395 12-418 3-422 (504)
45 PRK07165 F0F1 ATP synthase sub 100.0 0 0 495.6 22.8 368 43-418 4-398 (507)
46 PRK02118 V-type ATP synthase s 100.0 0 0 473.7 20.3 318 74-405 41-371 (432)
47 cd01134 V_A-ATPase_A V/A-type 100.0 0 0 466.0 22.8 273 93-370 60-369 (369)
48 pfam00006 ATP-synt_ab ATP synt 100.0 0 0 451.7 18.8 205 160-368 1-213 (213)
49 PTZ00185 ATPase alpha subunit; 100.0 0 0 433.2 19.1 322 75-399 82-430 (574)
50 PRK04192 V-type ATP synthase s 100.0 0 0 434.0 17.5 324 75-403 40-477 (585)
51 COG0055 AtpD F0F1-type ATP syn 100.0 0 0 398.6 12.5 321 81-404 52-384 (468)
52 TIGR01043 ATP_syn_A_arch ATP s 100.0 1.4E-45 0 318.3 14.0 354 27-385 52-454 (584)
53 KOG1350 consensus 100.0 0 0 322.1 4.9 319 82-403 99-433 (521)
54 TIGR01039 atpD ATP synthase F1 100.0 1.3E-42 0 299.5 14.0 321 81-404 48-379 (460)
55 COG1155 NtpA Archaeal/vacuolar 100.0 4.9E-43 0 302.3 7.2 262 134-400 184-473 (588)
56 COG1156 NtpB Archaeal/vacuolar 100.0 1.9E-38 4.8E-43 272.2 16.5 336 65-403 38-391 (463)
57 KOG1352 consensus 100.0 2.6E-34 6.6E-39 244.9 12.4 274 125-403 196-498 (618)
58 KOG1353 consensus 100.0 1.1E-32 2.9E-37 234.2 5.9 271 38-406 18-302 (340)
59 TIGR01041 ATP_syn_B_arch ATP s 100.0 2.5E-30 6.4E-35 218.7 16.4 336 66-407 34-387 (458)
60 TIGR01042 V-ATPase_V1_A V-type 100.0 8.7E-31 2.2E-35 221.7 13.7 281 120-405 173-483 (596)
61 KOG1351 consensus 100.0 4.3E-29 1.1E-33 210.6 17.2 324 76-404 64-418 (489)
62 TIGR01040 V-ATPase_V1_B V-type 99.9 1.5E-25 3.7E-30 187.3 17.9 333 75-408 41-397 (464)
63 cd01120 RecA-like_NTPases RecA 99.9 1.2E-21 3.1E-26 161.6 16.9 153 177-350 2-165 (165)
64 pfam07497 Rho_RNA_bind Rho ter 99.8 1.6E-21 4E-26 160.8 6.0 78 52-129 1-78 (78)
65 cd04459 Rho_CSD Rho_CSD: Rho p 99.7 1.5E-18 3.9E-23 141.1 5.8 68 54-121 1-68 (68)
66 PRK09302 circadian clock prote 98.6 1.6E-06 4.2E-11 62.0 12.2 250 83-374 184-452 (501)
67 PRK06067 flagellar accessory p 98.4 3.7E-06 9.3E-11 59.7 8.8 185 156-369 12-214 (241)
68 pfam07498 Rho_N Rho terminatio 98.4 4.6E-07 1.2E-11 65.6 4.1 43 8-50 1-43 (43)
69 COG0467 RAD55 RecA-superfamily 98.2 1.8E-05 4.6E-10 55.1 10.3 186 157-366 4-210 (260)
70 smart00382 AAA ATPases associa 98.2 6E-06 1.5E-10 58.2 6.3 96 173-279 1-96 (148)
71 pfam06745 KaiC KaiC. This fami 98.1 3.4E-05 8.7E-10 53.3 9.9 186 159-366 2-205 (231)
72 cd01124 KaiC KaiC is a circadi 98.1 3.7E-05 9.5E-10 53.0 8.8 167 177-366 2-180 (187)
73 PRK08533 flagellar accessory p 98.0 0.00017 4.3E-09 48.7 11.8 157 171-355 21-190 (230)
74 TIGR02858 spore_III_AA stage I 98.0 3.8E-06 9.7E-11 59.6 3.3 130 70-222 31-173 (282)
75 PRK09361 radB DNA repair and r 97.9 0.00013 3.4E-09 49.4 9.7 113 155-277 2-123 (224)
76 PRK09302 circadian clock prote 97.8 0.00067 1.7E-08 44.8 11.4 68 157-225 5-74 (501)
77 PRK04328 hypothetical protein; 97.8 0.00025 6.4E-09 47.6 9.0 188 157-369 5-217 (250)
78 PRK13341 recombination factor 97.7 0.00054 1.4E-08 45.4 9.5 206 163-411 41-290 (726)
79 cd01394 radB RadB. The archaea 97.7 0.0012 3E-08 43.2 11.0 173 159-351 2-187 (218)
80 COG2256 MGS1 ATPase related to 97.6 0.00052 1.3E-08 45.5 8.2 109 164-303 38-158 (436)
81 PRK13342 recombination factor 97.5 0.0015 3.7E-08 42.5 9.7 207 163-411 26-267 (417)
82 pfam00154 RecA recA bacterial 97.5 0.0012 3E-08 43.2 8.8 106 157-274 32-143 (322)
83 cd00983 recA RecA is a bacter 97.4 0.0014 3.6E-08 42.7 8.5 107 156-274 34-146 (325)
84 PRK00411 cdc6 cell division co 97.4 0.0023 5.8E-08 41.3 9.2 123 139-274 23-151 (394)
85 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0022 5.7E-08 41.3 8.9 113 159-277 2-131 (235)
86 TIGR03015 pepcterm_ATPase puta 97.3 0.0021 5.4E-08 41.5 8.4 116 143-271 16-133 (269)
87 pfam05496 RuvB_N Holliday junc 97.3 0.0014 3.5E-08 42.7 7.1 72 177-284 53-124 (234)
88 PRK03992 proteasome-activating 97.2 0.0068 1.7E-07 38.2 9.9 134 52-201 54-193 (390)
89 PRK09354 recA recombinase A; P 97.2 0.0043 1.1E-07 39.4 8.8 107 156-274 39-151 (350)
90 COG1474 CDC6 Cdc6-related prot 97.1 0.0079 2E-07 37.7 10.0 107 162-277 27-139 (366)
91 cd01393 recA_like RecA is a b 97.1 0.024 6.2E-07 34.5 12.2 111 159-276 2-129 (226)
92 pfam01580 FtsK_SpoIIIE FtsK/Sp 97.1 0.0068 1.7E-07 38.2 9.2 86 173-260 37-125 (202)
93 cd00009 AAA The AAA+ (ATPases 97.0 0.0053 1.4E-07 38.9 8.3 87 164-273 9-96 (151)
94 TIGR02237 recomb_radB DNA repa 97.0 0.0041 1E-07 39.6 7.1 150 177-345 15-184 (223)
95 COG1066 Sms Predicted ATP-depe 96.9 0.0033 8.4E-08 40.2 6.3 56 157-216 74-131 (456)
96 TIGR02204 MsbA_rel ABC transpo 96.9 0.0015 3.9E-08 42.5 4.5 135 130-294 334-483 (576)
97 PRK05342 clpX ATP-dependent pr 96.8 0.0037 9.3E-08 39.9 6.2 108 175-310 110-219 (411)
98 COG0468 RecA RecA/RadA recombi 96.8 0.018 4.6E-07 35.4 9.6 114 155-278 39-158 (279)
99 COG1222 RPT1 ATP-dependent 26S 96.8 0.042 1.1E-06 33.0 13.2 155 51-225 72-239 (406)
100 PRK00149 dnaA chromosomal repl 96.8 0.0074 1.9E-07 37.9 7.7 37 177-213 148-184 (447)
101 pfam00931 NB-ARC NB-ARC domain 96.8 0.0054 1.4E-07 38.8 6.9 102 164-272 8-111 (285)
102 PRK13657 cyclic beta-1,2-gluca 96.8 0.001 2.6E-08 43.6 2.9 214 132-389 333-572 (585)
103 pfam01637 Arch_ATPase Archaeal 96.8 0.015 3.8E-07 35.9 8.8 98 172-274 18-122 (223)
104 PRK05541 adenylylsulfate kinas 96.7 0.028 7.1E-07 34.1 10.0 92 173-279 6-97 (176)
105 COG3854 SpoIIIAA ncharacterize 96.7 0.0018 4.7E-08 41.9 3.9 48 172-219 134-183 (308)
106 PRK13651 cobalt transporter AT 96.7 0.025 6.4E-07 34.4 9.6 219 167-407 26-293 (304)
107 KOG0057 consensus 96.7 0.0032 8.1E-08 40.3 4.7 142 125-295 343-495 (591)
108 COG0552 FtsY Signal recognitio 96.6 0.023 6E-07 34.6 8.7 126 174-308 139-285 (340)
109 PRK13634 cbiO cobalt transport 96.6 0.015 3.8E-07 35.9 7.6 58 169-226 15-74 (276)
110 smart00357 CSP Cold shock prot 96.5 0.0063 1.6E-07 38.4 5.5 55 56-115 2-58 (64)
111 pfam05729 NACHT NACHT domain. 96.5 0.0021 5.3E-08 41.5 3.0 85 175-274 1-92 (165)
112 PRK13643 cbiO cobalt transport 96.4 0.019 4.8E-07 35.2 7.5 204 167-389 25-258 (288)
113 PRK13650 cbiO cobalt transport 96.4 0.0093 2.4E-07 37.3 5.8 33 167-199 23-55 (276)
114 pfam01583 APS_kinase Adenylyls 96.4 0.049 1.2E-06 32.5 9.4 124 173-311 1-129 (157)
115 KOG2028 consensus 96.4 0.041 1E-06 33.1 8.9 203 175-411 163-411 (554)
116 TIGR00763 lon ATP-dependent pr 96.3 0.0025 6.4E-08 41.0 2.5 267 13-360 312-625 (941)
117 cd03222 ABC_RNaseL_inhibitor T 96.3 0.0076 1.9E-07 37.8 4.9 31 170-200 21-51 (177)
118 PRK13639 cbiO cobalt transport 96.3 0.031 7.8E-07 33.9 7.9 30 169-198 23-52 (275)
119 cd02027 APSK Adenosine 5'-phos 96.3 0.079 2E-06 31.2 9.9 88 178-279 3-90 (149)
120 pfam00308 Bac_DnaA Bacterial d 96.2 0.098 2.5E-06 30.5 10.3 51 160-211 18-71 (219)
121 cd01121 Sms Sms (bacterial rad 96.2 0.074 1.9E-06 31.3 9.6 60 156-218 62-123 (372)
122 pfam00004 AAA ATPase family as 96.2 0.015 3.7E-07 36.0 6.0 24 177-200 1-24 (131)
123 PRK13646 cbiO cobalt transport 96.2 0.041 1E-06 33.0 8.1 30 169-198 28-57 (286)
124 PRK11823 DNA repair protein Ra 96.2 0.098 2.5E-06 30.5 9.9 173 156-341 70-312 (454)
125 COG5635 Predicted NTPase (NACH 96.1 0.0082 2.1E-07 37.6 4.3 54 160-213 208-263 (824)
126 PRK03846 adenylylsulfate kinas 96.1 0.063 1.6E-06 31.8 8.8 92 173-278 20-114 (198)
127 PRK04301 radA DNA repair and r 96.1 0.093 2.4E-06 30.7 9.6 114 157-276 84-214 (318)
128 TIGR00750 lao LAO/AO transport 96.1 0.018 4.6E-07 35.4 5.9 44 159-202 22-66 (333)
129 pfam07693 KAP_NTPase KAP famil 96.1 0.055 1.4E-06 32.2 8.3 112 163-274 7-173 (301)
130 TIGR02868 CydC ABC transporter 96.1 0.0058 1.5E-07 38.6 3.2 67 162-234 377-450 (566)
131 cd03238 ABC_UvrA The excision 96.0 0.036 9.3E-07 33.4 7.2 28 169-196 16-43 (176)
132 pfam00437 GSPII_E Type II/IV s 96.0 0.0098 2.5E-07 37.1 4.3 53 163-220 127-180 (283)
133 TIGR00635 ruvB Holliday juncti 96.0 0.0047 1.2E-07 39.2 2.7 70 176-281 32-101 (305)
134 PRK13631 cbiO cobalt transport 96.0 0.058 1.5E-06 32.1 8.1 33 167-199 45-77 (320)
135 COG3638 ABC-type phosphate/pho 96.0 0.01 2.6E-07 37.0 4.2 58 169-226 25-83 (258)
136 cd03262 ABC_HisP_GlnQ_permease 96.0 0.0057 1.4E-07 38.7 2.9 59 169-231 21-82 (213)
137 KOG4658 consensus 96.0 0.1 2.6E-06 30.5 9.3 100 162-271 168-271 (889)
138 COG1116 TauB ABC-type nitrate/ 96.0 0.0051 1.3E-07 39.0 2.6 28 169-196 24-51 (248)
139 KOG0745 consensus 95.9 0.022 5.5E-07 34.8 5.7 112 176-315 228-341 (564)
140 TIGR01277 thiQ thiamine ABC tr 95.9 0.0054 1.4E-07 38.8 2.4 30 169-198 19-48 (213)
141 PRK09519 recA recombinase A; R 95.9 0.085 2.2E-06 30.9 8.5 10 93-102 231-240 (790)
142 pfam00448 SRP54 SRP54-type pro 95.9 0.15 3.7E-06 29.4 11.2 85 177-270 4-92 (196)
143 TIGR02236 recomb_radA DNA repa 95.9 0.038 9.6E-07 33.3 6.7 118 156-276 76-230 (333)
144 PRK09270 frcK putative fructos 95.8 0.021 5.4E-07 34.9 5.3 43 171-213 29-73 (230)
145 cd03115 SRP The signal recogni 95.8 0.15 3.9E-06 29.2 11.0 85 177-270 3-91 (173)
146 PRK11642 exoribonuclease R; Pr 95.8 0.15 3.9E-06 29.2 9.9 77 17-103 37-127 (813)
147 PRK06526 transposase; Provisio 95.8 0.06 1.5E-06 32.0 7.5 44 160-203 84-127 (254)
148 PRK04841 transcriptional regul 95.8 0.11 2.8E-06 30.2 8.7 101 163-274 21-134 (903)
149 pfam08423 Rad51 Rad51. Rad51 i 95.8 0.16 4.1E-06 29.1 9.7 116 156-276 23-153 (261)
150 KOG0056 consensus 95.7 0.037 9.5E-07 33.3 6.3 144 119-295 523-682 (790)
151 PRK10522 multidrug transporter 95.7 0.0052 1.3E-07 38.9 1.9 53 133-199 322-374 (547)
152 TIGR03608 L_ocin_972_ABC putat 95.7 0.011 2.7E-07 36.9 3.4 60 169-231 19-82 (206)
153 PRK08118 topology modulation p 95.7 0.014 3.6E-07 36.1 4.0 52 175-226 2-53 (167)
154 TIGR02782 TrbB_P P-type conjug 95.7 0.05 1.3E-06 32.5 6.7 106 125-238 81-198 (315)
155 cd03295 ABC_OpuCA_Osmoprotecti 95.7 0.0072 1.8E-07 38.0 2.4 31 168-198 21-51 (242)
156 PRK05703 flhF flagellar biosyn 95.7 0.18 4.5E-06 28.9 11.8 142 170-350 206-354 (412)
157 cd03298 ABC_ThiQ_thiamine_tran 95.6 0.0076 1.9E-07 37.8 2.4 29 169-197 19-47 (211)
158 PRK10636 putative ABC transpor 95.6 0.0066 1.7E-07 38.3 2.1 33 167-199 331-363 (638)
159 PRK10636 putative ABC transpor 95.6 0.0069 1.8E-07 38.1 2.1 13 381-393 556-568 (638)
160 TIGR01242 26Sp45 26S proteasom 95.6 0.1 2.6E-06 30.5 8.1 157 51-224 43-209 (364)
161 cd03223 ABCD_peroxisomal_ALDP 95.6 0.0073 1.9E-07 37.9 2.2 47 136-196 3-49 (166)
162 PRK08084 DNA replication initi 95.6 0.19 4.7E-06 28.7 10.3 60 162-223 33-92 (235)
163 TIGR03265 PhnT2 putative 2-ami 95.6 0.0081 2.1E-07 37.7 2.4 131 168-304 24-230 (353)
164 PRK07261 topology modulation p 95.6 0.014 3.6E-07 36.1 3.5 51 176-226 2-52 (171)
165 cd03229 ABC_Class3 This class 95.6 0.0088 2.3E-07 37.4 2.5 29 169-197 21-49 (178)
166 PRK10787 DNA-binding ATP-depen 95.6 0.024 6.1E-07 34.5 4.7 123 125-278 311-433 (784)
167 cd03300 ABC_PotA_N PotA is an 95.6 0.0089 2.3E-07 37.4 2.5 28 169-196 21-48 (232)
168 cd03369 ABCC_NFT1 Domain 2 of 95.5 0.013 3.2E-07 36.4 3.3 32 169-200 29-60 (207)
169 PRK11432 fbpC ferric transport 95.5 0.0078 2E-07 37.8 2.2 28 169-196 27-54 (351)
170 cd03257 ABC_NikE_OppD_transpor 95.5 0.0088 2.3E-07 37.4 2.4 33 167-199 24-56 (228)
171 PRK07952 DNA replication prote 95.5 0.014 3.6E-07 36.1 3.5 76 133-228 65-141 (242)
172 cd03293 ABC_NrtD_SsuB_transpor 95.5 0.0087 2.2E-07 37.5 2.4 28 169-196 25-52 (220)
173 cd01122 GP4d_helicase GP4d_hel 95.5 0.2 5E-06 28.5 10.9 61 160-221 15-76 (271)
174 TIGR03258 PhnT 2-aminoethylpho 95.5 0.0091 2.3E-07 37.3 2.4 28 169-196 26-53 (362)
175 cd03294 ABC_Pro_Gly_Bertaine T 95.5 0.0089 2.3E-07 37.4 2.3 63 168-233 44-110 (269)
176 PRK09435 arginine/ornithine tr 95.5 0.042 1.1E-06 32.9 5.7 53 160-214 34-87 (325)
177 PRK00889 adenylylsulfate kinas 95.5 0.2 5.2E-06 28.5 10.3 93 173-279 3-95 (175)
178 cd03301 ABC_MalK_N The N-termi 95.5 0.01 2.6E-07 37.0 2.5 28 169-196 21-48 (213)
179 PRK11147 ABC transporter ATPas 95.4 0.0093 2.4E-07 37.3 2.3 35 166-200 337-371 (632)
180 COG3839 MalK ABC-type sugar tr 95.4 0.011 2.8E-07 36.8 2.6 28 169-196 24-51 (338)
181 PRK10584 putative ABC transpor 95.4 0.0096 2.4E-07 37.2 2.3 30 168-197 30-59 (228)
182 KOG0727 consensus 95.4 0.066 1.7E-06 31.7 6.6 104 165-268 178-300 (408)
183 PRK11819 putative ABC transpor 95.4 0.01 2.6E-07 37.0 2.4 31 166-196 342-372 (556)
184 PRK10771 thiQ thiamine transpo 95.4 0.011 2.8E-07 36.8 2.5 31 169-199 20-50 (233)
185 PRK11650 ugpC glycerol-3-phosp 95.4 0.01 2.6E-07 37.0 2.3 28 169-196 25-52 (358)
186 PRK10789 putative multidrug tr 95.4 0.019 4.9E-07 35.2 3.8 198 168-395 335-558 (569)
187 cd03299 ABC_ModC_like Archeal 95.4 0.01 2.7E-07 36.9 2.4 31 167-197 18-48 (235)
188 TIGR00064 ftsY signal recognit 95.4 0.22 5.6E-06 28.2 9.7 128 172-308 80-230 (284)
189 pfam03308 ArgK ArgK protein. T 95.4 0.03 7.6E-07 33.9 4.7 52 161-214 15-67 (267)
190 COG3842 PotA ABC-type spermidi 95.3 0.0086 2.2E-07 37.5 1.8 135 167-304 24-232 (352)
191 PRK11160 cysteine/glutathione 95.3 0.011 2.9E-07 36.7 2.4 32 169-200 362-393 (575)
192 cd03247 ABCC_cytochrome_bd The 95.3 0.013 3.4E-07 36.2 2.8 32 169-200 23-54 (178)
193 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.3 0.013 3.2E-07 36.4 2.6 32 167-198 22-53 (238)
194 PRK09493 glnQ glutamine ABC tr 95.3 0.018 4.7E-07 35.3 3.4 57 169-225 22-78 (240)
195 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.3 0.012 2.9E-07 36.6 2.4 65 167-231 23-88 (218)
196 cd03261 ABC_Org_Solvent_Resist 95.3 0.012 3.1E-07 36.5 2.5 59 169-231 21-83 (235)
197 PRK11248 tauB taurine transpor 95.3 0.011 2.9E-07 36.7 2.4 29 169-197 22-50 (255)
198 TIGR02928 TIGR02928 orc1/cdc6 95.3 0.13 3.4E-06 29.7 7.8 227 137-384 6-285 (383)
199 PRK13648 cbiO cobalt transport 95.3 0.013 3.3E-07 36.4 2.6 28 169-196 30-57 (269)
200 COG0466 Lon ATP-dependent Lon 95.3 0.025 6.3E-07 34.5 4.1 123 125-278 312-434 (782)
201 PRK10744 phosphate transporter 95.3 0.013 3.3E-07 36.4 2.6 29 169-197 31-59 (257)
202 PRK13637 cbiO cobalt transport 95.3 0.01 2.6E-07 37.0 2.0 227 167-410 26-285 (287)
203 cd03291 ABCC_CFTR1 The CFTR su 95.3 0.012 3.2E-07 36.4 2.5 203 168-399 57-265 (282)
204 COG1124 DppF ABC-type dipeptid 95.3 0.013 3.3E-07 36.3 2.6 32 169-201 28-59 (252)
205 cd03260 ABC_PstB_phosphate_tra 95.3 0.013 3.4E-07 36.2 2.6 30 169-198 21-50 (227)
206 cd03253 ABCC_ATM1_transporter 95.3 0.012 2.9E-07 36.6 2.3 30 168-197 21-50 (236)
207 PRK11147 ABC transporter ATPas 95.3 0.012 3E-07 36.6 2.3 15 210-224 349-363 (632)
208 KOG0735 consensus 95.2 0.19 4.9E-06 28.6 8.5 60 166-226 423-486 (952)
209 PRK11174 cysteine/glutathione 95.2 0.014 3.7E-07 36.0 2.7 31 167-197 369-399 (588)
210 cd03256 ABC_PhnC_transporter A 95.2 0.013 3.2E-07 36.4 2.4 55 169-226 22-80 (241)
211 pfam03796 DnaB_C DnaB-like hel 95.2 0.036 9.3E-07 33.4 4.8 62 159-221 3-65 (186)
212 cd03114 ArgK-like The function 95.2 0.12 3.2E-06 29.8 7.5 36 177-214 2-37 (148)
213 PRK09452 potA putrescine/sperm 95.2 0.013 3.3E-07 36.3 2.4 28 169-196 38-65 (378)
214 cd03250 ABCC_MRP_domain1 Domai 95.2 0.013 3.3E-07 36.4 2.3 31 168-198 25-55 (204)
215 COG4178 ABC-type uncharacteriz 95.2 0.012 3.2E-07 36.5 2.3 51 132-196 391-441 (604)
216 cd03228 ABCC_MRP_Like The MRP 95.2 0.014 3.5E-07 36.1 2.5 30 169-198 23-52 (171)
217 PRK11176 lipid transporter ATP 95.2 0.013 3.3E-07 36.3 2.3 31 169-199 363-393 (581)
218 PRK10247 putative ABC transpor 95.2 0.015 3.8E-07 35.9 2.6 31 168-198 27-57 (225)
219 cd03289 ABCC_CFTR2 The CFTR su 95.2 0.012 3.1E-07 36.5 2.1 34 166-199 22-55 (275)
220 PRK10851 sulfate/thiosulfate t 95.1 0.014 3.5E-07 36.2 2.4 54 253-306 180-234 (352)
221 COG3267 ExeA Type II secretory 95.1 0.26 6.6E-06 27.8 9.1 103 163-274 39-144 (269)
222 cd03234 ABCG_White The White s 95.1 0.014 3.6E-07 36.1 2.4 28 169-196 28-55 (226)
223 PRK13633 cobalt transporter AT 95.1 0.015 3.7E-07 36.0 2.5 56 133-197 5-60 (281)
224 cd03226 ABC_cobalt_CbiO_domain 95.1 0.016 4E-07 35.8 2.6 30 169-198 21-50 (205)
225 COG2274 SunT ABC-type bacterio 95.1 0.0058 1.5E-07 38.6 0.4 220 114-367 441-683 (709)
226 PRK10070 glycine betaine trans 95.1 0.013 3.2E-07 36.4 2.1 105 118-233 9-114 (400)
227 PRK13543 cytochrome c biogenes 95.1 0.016 4.1E-07 35.7 2.6 30 169-198 32-61 (214)
228 cd03296 ABC_CysA_sulfate_impor 95.1 0.014 3.6E-07 36.0 2.4 29 168-196 22-50 (239)
229 cd03237 ABC_RNaseL_inhibitor_d 95.1 0.011 2.9E-07 36.7 1.9 49 170-218 21-69 (246)
230 cd01125 repA Hexameric Replica 95.1 0.22 5.5E-06 28.3 8.4 99 174-274 1-124 (239)
231 cd03246 ABCC_Protease_Secretio 95.1 0.015 3.9E-07 35.8 2.5 31 169-199 23-53 (173)
232 TIGR03375 type_I_sec_LssB type 95.1 0.001 2.7E-08 43.5 -3.5 108 167-294 484-608 (694)
233 cd03251 ABCC_MsbA MsbA is an e 95.1 0.015 3.9E-07 35.8 2.5 30 169-198 23-52 (234)
234 cd03290 ABCC_SUR1_N The SUR do 95.1 0.025 6.4E-07 34.4 3.5 32 169-200 22-53 (218)
235 PRK11000 maltose/maltodextrin 95.1 0.015 3.7E-07 36.0 2.4 28 169-196 24-51 (369)
236 PRK09984 phosphonate/organopho 95.1 0.016 4E-07 35.8 2.5 30 169-198 25-54 (262)
237 PRK11701 phnK phosphonates tra 95.1 0.016 4.2E-07 35.7 2.6 34 167-200 25-58 (258)
238 cd03248 ABCC_TAP TAP, the Tran 95.1 0.014 3.7E-07 36.0 2.3 60 126-199 4-65 (226)
239 TIGR02857 CydD ABC transporter 95.1 0.017 4.3E-07 35.6 2.6 129 129-292 345-500 (570)
240 PRK13546 teichoic acids export 95.0 0.016 4.1E-07 35.7 2.5 33 167-199 43-75 (264)
241 PRK10416 cell division protein 95.0 0.28 7.1E-06 27.5 9.2 125 176-307 297-440 (499)
242 PRK09544 znuC high-affinity zi 95.0 0.017 4.4E-07 35.5 2.6 30 169-198 25-54 (251)
243 PRK13635 cbiO cobalt transport 95.0 0.016 4.1E-07 35.7 2.4 33 167-199 26-58 (279)
244 PRK11264 putative amino-acid A 95.0 0.017 4.4E-07 35.5 2.5 28 169-196 22-49 (248)
245 pfam01695 IstB IstB-like ATP b 95.0 0.04 1E-06 33.1 4.4 42 167-210 40-81 (178)
246 TIGR02673 FtsE cell division A 95.0 0.012 3E-07 36.6 1.6 78 135-226 3-81 (215)
247 TIGR01846 type_I_sec_HlyB type 95.0 0.012 3.1E-07 36.5 1.7 151 115-291 434-605 (703)
248 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.097 2.5E-06 30.6 6.3 50 159-210 23-72 (226)
249 TIGR02315 ABC_phnC phosphonate 95.0 0.015 3.9E-07 35.9 2.2 183 136-352 4-240 (253)
250 cd03236 ABC_RNaseL_inhibitor_d 95.0 0.019 4.9E-07 35.2 2.7 29 169-198 22-50 (255)
251 cd03245 ABCC_bacteriocin_expor 94.9 0.017 4.4E-07 35.5 2.4 30 169-198 25-54 (220)
252 PRK12422 chromosomal replicati 94.9 0.13 3.3E-06 29.7 6.9 34 176-211 143-176 (455)
253 PRK10790 putative multidrug tr 94.9 0.018 4.5E-07 35.4 2.5 212 133-388 340-576 (593)
254 PRK13642 cbiO cobalt transport 94.9 0.016 4.2E-07 35.7 2.3 29 169-197 28-56 (277)
255 PRK13538 cytochrome c biogenes 94.9 0.019 4.9E-07 35.2 2.6 30 168-197 21-50 (204)
256 PRK11629 lolD lipoprotein tran 94.9 0.018 4.7E-07 35.3 2.5 30 167-196 28-57 (233)
257 TIGR03415 ABC_choXWV_ATP choli 94.9 0.018 4.5E-07 35.4 2.4 69 118-197 5-73 (382)
258 cd03244 ABCC_MRP_domain2 Domai 94.9 0.02 5.1E-07 35.1 2.6 31 169-199 25-55 (221)
259 PRK13652 cbiO cobalt transport 94.9 0.015 3.8E-07 35.9 1.9 30 169-198 25-54 (277)
260 PRK04220 2-phosphoglycerate ki 94.8 0.25 6.4E-06 27.8 8.1 151 105-266 11-196 (306)
261 PRK13632 cbiO cobalt transport 94.8 0.019 5E-07 35.2 2.4 54 132-198 7-60 (273)
262 cd03231 ABC_CcmA_heme_exporter 94.8 0.021 5.4E-07 34.9 2.6 29 169-197 21-49 (201)
263 cd02028 UMPK_like Uridine mono 94.8 0.045 1.1E-06 32.8 4.3 29 177-205 2-30 (179)
264 PRK10867 signal recognition pa 94.8 0.32 8.2E-06 27.2 10.4 85 175-265 101-188 (453)
265 PRK11607 potG putrescine trans 94.8 0.019 4.8E-07 35.3 2.3 53 138-196 15-67 (377)
266 cd03225 ABC_cobalt_CbiO_domain 94.8 0.022 5.6E-07 34.8 2.6 31 168-198 21-51 (211)
267 cd03297 ABC_ModC_molybdenum_tr 94.8 0.022 5.5E-07 34.9 2.6 27 169-196 19-45 (214)
268 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.8 0.017 4.4E-07 35.5 2.0 31 168-198 42-72 (224)
269 PRK13900 type IV secretion sys 94.8 0.21 5.4E-06 28.3 7.6 105 94-201 82-187 (332)
270 PRK10419 nikE nickel transport 94.8 0.02 5.1E-07 35.1 2.4 62 167-232 31-96 (266)
271 cd03235 ABC_Metallic_Cations A 94.8 0.022 5.7E-07 34.8 2.6 31 169-199 20-50 (213)
272 PRK11247 ssuB aliphatic sulfon 94.8 0.02 5E-07 35.1 2.3 30 169-198 33-62 (257)
273 PRK10575 iron-hydroxamate tran 94.7 0.022 5.6E-07 34.8 2.5 29 169-197 32-60 (265)
274 PRK11831 putative ABC transpor 94.7 0.013 3.3E-07 36.4 1.3 35 167-201 27-61 (269)
275 PRK13540 cytochrome c biogenes 94.7 0.024 6E-07 34.6 2.6 32 169-200 22-53 (200)
276 PRK06696 uridine kinase; Valid 94.7 0.11 2.8E-06 30.3 5.9 60 159-220 9-72 (227)
277 PRK11819 putative ABC transpor 94.7 0.024 6E-07 34.6 2.6 36 375-410 446-492 (556)
278 PRK13547 hmuV hemin importer A 94.7 0.022 5.7E-07 34.8 2.4 28 169-196 22-49 (273)
279 COG4987 CydC ABC-type transpor 94.6 0.025 6.2E-07 34.5 2.6 35 167-201 357-391 (573)
280 PRK03695 vitamin B12-transport 94.6 0.023 5.8E-07 34.7 2.4 35 162-196 11-45 (245)
281 cd03258 ABC_MetN_methionine_tr 94.6 0.021 5.2E-07 35.0 2.2 61 169-233 26-90 (233)
282 cd03217 ABC_FeS_Assembly ABC-t 94.6 0.023 5.8E-07 34.7 2.4 28 169-196 21-48 (200)
283 TIGR02788 VirB11 P-type DNA tr 94.6 0.16 4E-06 29.2 6.6 91 96-201 89-185 (328)
284 PRK13640 cbiO cobalt transport 94.6 0.023 5.9E-07 34.7 2.4 30 169-198 29-58 (283)
285 PTZ00035 Rad51; Provisional 94.6 0.37 9.3E-06 26.8 10.0 115 157-277 111-241 (350)
286 PRK12724 flagellar biosynthesi 94.5 0.37 9.3E-06 26.8 9.6 33 171-203 218-252 (432)
287 cd03288 ABCC_SUR2 The SUR doma 94.5 0.027 6.8E-07 34.2 2.6 56 130-199 16-72 (257)
288 PRK13542 consensus 94.5 0.023 5.8E-07 34.7 2.2 31 169-199 39-69 (224)
289 TIGR00972 3a0107s01c2 phosphat 94.5 0.024 6E-07 34.6 2.3 57 169-226 22-84 (248)
290 cd03292 ABC_FtsE_transporter F 94.5 0.026 6.5E-07 34.4 2.4 58 168-226 21-80 (214)
291 PRK11124 artP arginine transpo 94.5 0.027 6.9E-07 34.2 2.5 30 167-196 21-50 (242)
292 COG4619 ABC-type uncharacteriz 94.5 0.03 7.6E-07 33.9 2.7 62 169-251 24-85 (223)
293 cd03254 ABCC_Glucan_exporter_l 94.5 0.027 6.9E-07 34.2 2.5 30 169-198 24-53 (229)
294 PRK08903 hypothetical protein; 94.5 0.16 4.1E-06 29.1 6.4 51 158-210 25-76 (227)
295 TIGR02142 modC_ABC molybdate A 94.5 0.027 6.9E-07 34.2 2.5 93 258-358 180-274 (361)
296 PRK10938 putative molybdenum t 94.5 0.025 6.5E-07 34.4 2.3 30 167-196 279-308 (490)
297 PRK00080 ruvB Holliday junctio 94.5 0.12 3E-06 30.0 5.7 69 176-280 53-121 (328)
298 TIGR00368 TIGR00368 Mg chelata 94.5 0.032 8.2E-07 33.7 2.8 78 116-195 156-234 (505)
299 PRK05748 replicative DNA helic 94.5 0.099 2.5E-06 30.5 5.3 60 157-218 185-245 (448)
300 CHL00131 ycf16 sulfate ABC tra 94.4 0.026 6.6E-07 34.3 2.3 28 169-196 27-54 (252)
301 PRK10895 putative ABC transpor 94.4 0.03 7.6E-07 33.9 2.6 32 169-200 24-55 (241)
302 PRK06674 DNA polymerase III su 94.4 0.39 9.9E-06 26.6 9.8 19 181-199 45-63 (563)
303 PRK09580 sufC cysteine desulfu 94.4 0.03 7.6E-07 33.9 2.5 28 169-196 22-49 (248)
304 cd03233 ABC_PDR_domain1 The pl 94.4 0.029 7.4E-07 34.0 2.5 30 169-198 28-57 (202)
305 PRK05595 replicative DNA helic 94.4 0.1 2.5E-06 30.5 5.2 62 157-219 183-245 (444)
306 PRK08116 hypothetical protein; 94.4 0.12 3.1E-06 29.9 5.7 92 116-227 60-152 (262)
307 PRK13647 cbiO cobalt transport 94.3 0.03 7.5E-07 34.0 2.4 28 169-196 26-53 (273)
308 PRK10261 glutathione transport 94.3 0.015 3.7E-07 36.0 0.9 33 167-199 343-375 (623)
309 PRK13548 hmuV hemin importer A 94.3 0.032 8.2E-07 33.7 2.6 31 169-199 23-53 (257)
310 COG1703 ArgK Putative periplas 94.3 0.15 3.8E-06 29.3 6.0 53 160-214 36-89 (323)
311 COG0593 DnaA ATPase involved i 94.3 0.076 1.9E-06 31.3 4.5 52 159-210 96-149 (408)
312 PRK07667 uridine kinase; Provi 94.3 0.076 1.9E-06 31.3 4.5 41 171-213 9-51 (190)
313 PRK10619 histidine/lysine/argi 94.3 0.031 8E-07 33.8 2.5 28 169-196 26-53 (257)
314 PRK10253 iron-enterobactin tra 94.3 0.027 7E-07 34.2 2.2 30 169-198 28-57 (265)
315 TIGR03600 phage_DnaB phage rep 94.3 0.1 2.6E-06 30.5 5.0 60 157-218 176-236 (421)
316 COG2255 RuvB Holliday junction 94.3 0.039 1E-06 33.2 2.9 83 163-281 36-123 (332)
317 cd00984 DnaB_C DnaB helicase C 94.3 0.087 2.2E-06 30.9 4.7 51 170-221 9-59 (242)
318 PRK13409 putative ATPase RIL; 94.2 0.033 8.3E-07 33.7 2.5 31 170-200 361-391 (590)
319 COG0563 Adk Adenylate kinase a 94.2 0.04 1E-06 33.1 2.9 24 175-198 1-24 (178)
320 TIGR00929 VirB4_CagE type IV s 94.2 0.06 1.5E-06 31.9 3.8 44 176-219 518-562 (931)
321 PRK13644 cbiO cobalt transport 94.2 0.034 8.7E-07 33.6 2.5 30 169-198 23-52 (274)
322 PRK13539 cytochrome c biogenes 94.2 0.035 8.9E-07 33.5 2.6 31 169-199 23-53 (206)
323 PRK10908 cell division protein 94.2 0.03 7.8E-07 33.9 2.3 55 169-226 23-81 (222)
324 COG0464 SpoVK ATPases of the A 94.2 0.25 6.3E-06 27.9 6.9 74 176-277 278-351 (494)
325 COG3840 ThiQ ABC-type thiamine 94.2 0.029 7.5E-07 34.0 2.2 31 168-198 19-49 (231)
326 COG1136 SalX ABC-type antimicr 94.2 0.036 9.2E-07 33.4 2.6 74 169-245 26-106 (226)
327 pfam06414 Zeta_toxin Zeta toxi 94.2 0.26 6.7E-06 27.7 7.0 22 177-198 15-36 (191)
328 cd00267 ABC_ATPase ABC (ATP-bi 94.2 0.035 9E-07 33.5 2.6 30 169-198 20-49 (157)
329 PRK11300 livG leucine/isoleuci 94.2 0.035 9E-07 33.4 2.5 29 169-197 26-54 (255)
330 TIGR01447 recD exodeoxyribonuc 94.2 0.046 1.2E-06 32.7 3.1 64 166-229 234-300 (753)
331 cd03213 ABCG_EPDR ABCG transpo 94.2 0.033 8.4E-07 33.7 2.3 28 169-196 30-57 (194)
332 cd03224 ABC_TM1139_LivF_branch 94.2 0.037 9.4E-07 33.3 2.6 33 168-200 20-52 (222)
333 TIGR00416 sms DNA repair prote 94.2 0.066 1.7E-06 31.7 3.9 60 160-222 87-148 (481)
334 PRK13649 cbiO cobalt transport 94.2 0.034 8.6E-07 33.6 2.4 60 167-226 26-87 (280)
335 PRK09183 transposase/IS protei 94.2 0.085 2.2E-06 30.9 4.5 38 168-205 95-132 (258)
336 PRK06217 hypothetical protein; 94.2 0.1 2.6E-06 30.5 4.8 40 175-214 2-41 (185)
337 COG0194 Gmk Guanylate kinase [ 94.2 0.06 1.5E-06 31.9 3.7 81 173-269 3-102 (191)
338 TIGR03269 met_CoM_red_A2 methy 94.2 0.031 7.8E-07 33.9 2.2 28 169-196 305-332 (520)
339 PRK08451 DNA polymerase III su 94.1 0.42 1.1E-05 26.4 8.0 40 162-201 23-63 (523)
340 TIGR02203 MsbA_lipidA lipid A 94.1 0.02 5.1E-07 35.1 1.2 62 124-198 350-412 (603)
341 PRK11153 metN DL-methionine tr 94.1 0.035 8.9E-07 33.5 2.4 55 169-226 26-84 (343)
342 cd03218 ABC_YhbG The ABC trans 94.1 0.037 9.5E-07 33.3 2.5 31 168-198 20-50 (232)
343 cd03252 ABCC_Hemolysin The ABC 94.1 0.036 9.1E-07 33.4 2.4 30 169-198 23-52 (237)
344 COG2874 FlaH Predicted ATPases 94.1 0.45 1.2E-05 26.2 12.0 152 171-353 25-193 (235)
345 TIGR02324 CP_lyasePhnL phospho 94.1 0.035 9E-07 33.5 2.4 113 169-295 29-157 (224)
346 cd03232 ABC_PDR_domain2 The pl 94.1 0.036 9.1E-07 33.4 2.4 30 167-196 26-55 (192)
347 PRK11614 livF leucine/isoleuci 94.1 0.039 9.8E-07 33.2 2.6 32 167-198 24-55 (237)
348 PRK13636 cbiO cobalt transport 94.1 0.038 9.7E-07 33.2 2.5 30 168-197 26-55 (285)
349 PRK07263 consensus 94.1 0.14 3.6E-06 29.5 5.4 53 157-209 185-238 (453)
350 PRK11144 modC molybdate transp 94.1 0.037 9.6E-07 33.3 2.5 46 257-302 176-222 (352)
351 PRK08181 transposase; Validate 94.1 0.092 2.3E-06 30.7 4.5 33 170-202 102-134 (269)
352 PRK08082 consensus 94.0 0.14 3.5E-06 29.5 5.4 45 157-201 185-230 (453)
353 pfam04665 Pox_A32 Poxvirus A32 94.0 0.39 9.8E-06 26.6 7.6 86 173-272 12-109 (241)
354 PRK11231 fecE iron-dicitrate t 94.0 0.024 6.2E-07 34.5 1.5 30 169-198 23-52 (255)
355 cd03263 ABC_subfamily_A The AB 94.0 0.052 1.3E-06 32.3 3.2 33 169-201 23-55 (220)
356 PRK13645 cbiO cobalt transport 94.0 0.036 9.2E-07 33.4 2.3 34 163-196 25-59 (289)
357 PRK12402 replication factor C 94.0 0.14 3.5E-06 29.6 5.2 33 172-204 34-66 (337)
358 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.0 0.041 1E-06 33.0 2.5 31 169-199 21-51 (144)
359 cd03259 ABC_Carb_Solutes_like 94.0 0.04 1E-06 33.1 2.5 30 169-198 21-50 (213)
360 cd03265 ABC_DrrA DrrA is the A 93.9 0.051 1.3E-06 32.4 3.0 54 167-220 19-72 (220)
361 COG0488 Uup ATPase components 93.9 0.043 1.1E-06 32.9 2.6 33 166-198 340-372 (530)
362 TIGR02211 LolD_lipo_ex lipopro 93.9 0.038 9.8E-07 33.2 2.3 47 169-219 26-72 (221)
363 PRK08760 replicative DNA helic 93.9 0.14 3.6E-06 29.5 5.1 63 157-220 211-274 (476)
364 PRK11308 dppF dipeptide transp 93.9 0.035 8.8E-07 33.5 2.0 57 134-196 6-63 (327)
365 COG1132 MdlB ABC-type multidru 93.9 0.053 1.4E-06 32.3 3.0 53 134-200 329-381 (567)
366 PRK08694 consensus 93.9 0.14 3.4E-06 29.6 5.0 53 157-209 200-253 (468)
367 COG1126 GlnQ ABC-type polar am 93.9 0.043 1.1E-06 32.9 2.5 56 169-226 23-79 (240)
368 PRK12377 putative replication 93.8 0.12 3.1E-06 29.9 4.8 63 133-205 70-132 (248)
369 TIGR01241 FtsH_fam ATP-depende 93.8 0.034 8.6E-07 33.6 1.9 47 127-196 68-114 (505)
370 cd01130 VirB11-like_ATPase Typ 93.8 0.14 3.6E-06 29.5 5.1 54 160-219 10-64 (186)
371 COG1134 TagH ABC-type polysacc 93.8 0.028 7.1E-07 34.2 1.4 30 169-198 48-77 (249)
372 PRK00440 rfc replication facto 93.8 0.37 9.4E-06 26.8 7.1 26 176-201 39-64 (318)
373 PRK11288 araG L-arabinose tran 93.7 0.046 1.2E-06 32.7 2.5 28 169-196 274-301 (501)
374 COG4555 NatA ABC-type Na+ tran 93.7 0.06 1.5E-06 31.9 3.0 57 165-221 19-75 (245)
375 pfam07726 AAA_3 ATPase family 93.7 0.059 1.5E-06 32.0 3.0 25 177-201 2-26 (131)
376 PRK07270 DNA polymerase III su 93.7 0.53 1.4E-05 25.7 8.4 18 181-198 44-61 (557)
377 TIGR01187 potA polyamine ABC t 93.7 0.037 9.4E-07 33.3 1.9 62 268-336 160-222 (331)
378 TIGR03411 urea_trans_UrtD urea 93.7 0.041 1E-06 33.0 2.1 29 168-196 22-50 (242)
379 pfam04851 ResIII Type III rest 93.7 0.2 5E-06 28.5 5.6 39 162-203 9-47 (103)
380 PRK05564 DNA polymerase III su 93.7 0.54 1.4E-05 25.6 8.7 51 175-226 27-85 (313)
381 cd03214 ABC_Iron-Siderophores_ 93.6 0.052 1.3E-06 32.3 2.6 33 169-201 20-52 (180)
382 TIGR03522 GldA_ABC_ATP gliding 93.6 0.073 1.9E-06 31.4 3.3 53 168-220 22-74 (301)
383 PRK13768 GTPase; Provisional 93.6 0.12 3E-06 30.0 4.4 92 177-268 5-103 (253)
384 PRK09536 btuD corrinoid ABC tr 93.6 0.047 1.2E-06 32.7 2.3 72 235-306 162-237 (409)
385 PRK13894 conjugal transfer ATP 93.6 0.26 6.6E-06 27.8 6.1 46 163-208 137-183 (320)
386 PRK13544 consensus 93.6 0.034 8.8E-07 33.5 1.6 31 169-199 22-52 (208)
387 COG4988 CydD ABC-type transpor 93.6 0.027 6.8E-07 34.2 1.0 32 165-196 338-369 (559)
388 pfam03029 ATP_bind_1 Conserved 93.6 0.092 2.3E-06 30.7 3.7 85 179-268 1-96 (234)
389 PRK13641 cbiO cobalt transport 93.5 0.046 1.2E-06 32.7 2.2 32 167-198 26-57 (286)
390 cd03230 ABC_DR_subfamily_A Thi 93.5 0.071 1.8E-06 31.5 3.1 32 169-200 21-52 (173)
391 PRK13638 cbiO cobalt transport 93.5 0.055 1.4E-06 32.2 2.5 29 169-197 22-50 (271)
392 TIGR03499 FlhF flagellar biosy 93.5 0.15 3.7E-06 29.4 4.7 49 171-219 190-240 (282)
393 TIGR02173 cyt_kin_arch cytidyl 93.5 0.048 1.2E-06 32.6 2.2 24 178-201 4-27 (173)
394 cd03227 ABC_Class2 ABC-type Cl 93.5 0.25 6.3E-06 27.9 5.8 31 170-200 17-47 (162)
395 KOG1433 consensus 93.5 0.46 1.2E-05 26.1 7.2 113 156-271 91-210 (326)
396 PRK08006 replicative DNA helic 93.5 0.2 5E-06 28.5 5.3 46 157-202 206-252 (471)
397 PRK08939 primosomal protein Dn 93.5 0.18 4.5E-06 28.8 5.1 59 161-228 144-202 (306)
398 PRK05896 DNA polymerase III su 93.5 0.58 1.5E-05 25.4 8.2 111 174-293 38-152 (613)
399 PRK11022 dppD dipeptide transp 93.5 0.052 1.3E-06 32.4 2.3 38 162-199 20-58 (327)
400 PRK13536 nodulation factor exp 93.4 0.068 1.7E-06 31.6 2.9 35 167-201 26-60 (306)
401 TIGR00955 3a01204 Pigment prec 93.4 0.065 1.7E-06 31.7 2.8 50 172-224 56-107 (671)
402 COG1127 Ttg2A ABC-type transpo 93.4 0.11 2.9E-06 30.1 4.0 30 169-198 29-58 (263)
403 cd03271 ABC_UvrA_II The excisi 93.4 0.056 1.4E-06 32.1 2.5 26 169-194 16-41 (261)
404 cd02025 PanK Pantothenate kina 93.4 0.16 4E-06 29.2 4.8 31 177-207 2-32 (220)
405 cd03216 ABC_Carb_Monos_I This 93.4 0.06 1.5E-06 31.9 2.6 105 169-306 21-127 (163)
406 PRK07004 replicative DNA helic 93.4 0.18 4.5E-06 28.9 5.0 52 157-208 195-247 (460)
407 KOG0744 consensus 93.4 0.6 1.5E-05 25.4 8.1 90 175-280 178-269 (423)
408 PRK09473 oppD oligopeptide tra 93.4 0.054 1.4E-06 32.2 2.3 39 162-200 29-68 (330)
409 cd03269 ABC_putative_ATPase Th 93.4 0.041 1E-06 33.0 1.7 35 167-201 19-53 (210)
410 TIGR00959 ffh signal recogniti 93.4 0.6 1.5E-05 25.3 9.1 94 176-274 104-203 (439)
411 KOG0743 consensus 93.4 0.072 1.8E-06 31.4 2.9 33 169-201 228-262 (457)
412 PRK08506 replicative DNA helic 93.4 0.18 4.6E-06 28.8 5.0 49 157-205 175-224 (473)
413 PRK04195 replication factor C 93.4 0.15 3.7E-06 29.4 4.5 38 177-219 43-81 (403)
414 PRK13764 ATPase; Provisional 93.4 0.11 2.7E-06 30.3 3.8 67 139-218 231-298 (605)
415 COG4586 ABC-type uncharacteriz 93.4 0.034 8.5E-07 33.6 1.2 34 163-196 39-72 (325)
416 cd03267 ABC_NatA_like Similar 93.3 0.059 1.5E-06 32.0 2.5 35 167-201 40-74 (236)
417 COG0714 MoxR-like ATPases [Gen 93.3 0.12 3.1E-06 30.0 4.0 51 167-220 36-86 (329)
418 PRK06904 replicative DNA helic 93.3 0.18 4.7E-06 28.7 4.9 52 157-208 203-255 (472)
419 PRK05636 replicative DNA helic 93.3 0.21 5.4E-06 28.3 5.2 64 156-220 248-312 (507)
420 COG1122 CbiO ABC-type cobalt t 93.3 0.057 1.5E-06 32.1 2.3 56 166-226 22-81 (235)
421 PRK13549 xylose transporter AT 93.2 0.063 1.6E-06 31.8 2.5 30 167-196 281-310 (513)
422 COG1219 ClpX ATP-dependent pro 93.2 0.24 6.1E-06 28.0 5.4 97 176-297 99-197 (408)
423 PRK04040 adenylate kinase; Pro 93.2 0.45 1.1E-05 26.2 6.8 82 174-269 2-87 (189)
424 cd03215 ABC_Carb_Monos_II This 93.2 0.039 9.9E-07 33.2 1.3 33 168-200 20-52 (182)
425 cd03264 ABC_drug_resistance_li 93.2 0.047 1.2E-06 32.6 1.7 52 169-221 21-72 (211)
426 COG1484 DnaC DNA replication p 93.2 0.25 6.4E-06 27.9 5.4 45 162-210 95-139 (254)
427 CHL00195 ycf46 Ycf46; Provisio 93.2 0.29 7.3E-06 27.5 5.7 25 177-201 262-286 (491)
428 COG3451 VirB4 Type IV secretor 93.2 0.13 3.3E-06 29.7 4.0 96 176-280 438-545 (796)
429 PRK13545 tagH teichoic acids e 93.1 0.073 1.9E-06 31.4 2.6 29 168-196 44-72 (549)
430 PRK10919 ATP-dependent DNA hel 93.1 0.18 4.6E-06 28.8 4.6 12 172-183 232-243 (672)
431 PRK13833 conjugal transfer pro 93.1 0.4 1E-05 26.5 6.4 47 163-209 132-179 (323)
432 PRK13541 cytochrome c biogenes 93.1 0.058 1.5E-06 32.0 2.1 33 166-198 18-50 (195)
433 PRK06749 replicative DNA helic 93.1 0.22 5.6E-06 28.2 5.0 49 157-205 168-217 (428)
434 PTZ00265 multidrug resistance 93.1 0.08 2E-06 31.1 2.8 54 133-198 382-435 (1467)
435 PRK08840 replicative DNA helic 93.0 0.22 5.6E-06 28.2 5.0 59 157-217 199-258 (464)
436 KOG0060 consensus 93.0 0.031 7.9E-07 33.8 0.6 51 132-196 432-483 (659)
437 PRK09112 DNA polymerase III su 93.0 0.69 1.7E-05 25.0 9.6 24 177-200 48-71 (352)
438 TIGR03410 urea_trans_UrtE urea 93.0 0.059 1.5E-06 32.0 2.0 33 167-199 19-51 (230)
439 PRK10938 putative molybdenum t 93.0 0.072 1.8E-06 31.4 2.4 17 210-226 189-205 (490)
440 cd03219 ABC_Mj1267_LivG_branch 92.9 0.078 2E-06 31.2 2.6 28 169-196 21-48 (236)
441 PRK06321 replicative DNA helic 92.9 0.27 6.9E-06 27.7 5.3 53 157-209 208-261 (472)
442 cd01127 TrwB Bacterial conjuga 92.9 0.33 8.5E-06 27.0 5.7 61 214-274 216-283 (410)
443 CHL00181 cbbX CbbX; Provisiona 92.8 0.37 9.5E-06 26.7 5.9 31 169-199 54-84 (287)
444 TIGR01842 type_I_sec_PrtD type 92.8 0.069 1.7E-06 31.6 2.2 156 107-308 312-486 (556)
445 PRK13409 putative ATPase RIL; 92.8 0.091 2.3E-06 30.8 2.8 29 172-200 97-125 (590)
446 KOG0062 consensus 92.8 0.055 1.4E-06 32.2 1.6 32 169-200 101-132 (582)
447 pfam00625 Guanylate_kin Guanyl 92.8 0.19 4.8E-06 28.7 4.3 91 177-279 4-109 (182)
448 TIGR00968 3a0106s01 sulfate AB 92.8 0.077 2E-06 31.2 2.4 47 169-222 21-67 (241)
449 PRK10982 galactose/methyl gala 92.7 0.084 2.1E-06 31.0 2.5 28 169-196 269-296 (491)
450 PRK10762 D-ribose transporter 92.7 0.084 2.1E-06 31.0 2.4 28 169-196 273-300 (501)
451 PTZ00301 uridine kinase; Provi 92.7 0.24 6.2E-06 27.9 4.8 26 177-202 6-31 (210)
452 KOG0736 consensus 92.6 0.074 1.9E-06 31.3 2.1 45 177-223 708-757 (953)
453 COG1120 FepC ABC-type cobalami 92.6 0.054 1.4E-06 32.2 1.4 33 167-199 21-53 (258)
454 COG1123 ATPase components of v 92.6 0.093 2.4E-06 30.7 2.6 62 162-227 304-370 (539)
455 PRK13537 lipooligosaccharide t 92.6 0.11 2.7E-06 30.3 2.9 35 167-201 24-58 (304)
456 pfam07728 AAA_5 AAA domain (dy 92.6 0.099 2.5E-06 30.5 2.7 23 177-199 2-24 (139)
457 PRK12323 DNA polymerase III su 92.6 0.76 1.9E-05 24.7 7.2 21 180-200 44-64 (721)
458 PRK10418 nikD nickel transport 92.6 0.082 2.1E-06 31.1 2.3 30 169-198 24-53 (254)
459 PRK13695 putative NTPase; Prov 92.6 0.21 5.3E-06 28.4 4.3 27 175-201 4-30 (174)
460 TIGR01193 bacteriocin_ABC ABC- 92.6 0.054 1.4E-06 32.3 1.3 43 161-203 486-531 (710)
461 pfam03205 MobB Molybdopterin g 92.5 0.24 6.1E-06 28.0 4.6 29 176-204 2-30 (122)
462 COG1131 CcmA ABC-type multidru 92.5 0.093 2.4E-06 30.7 2.5 32 169-200 26-57 (293)
463 TIGR00958 3a01208 antigen pept 92.5 0.1 2.6E-06 30.4 2.7 80 125-216 522-616 (770)
464 PRK06851 hypothetical protein; 92.5 0.2 5.1E-06 28.5 4.2 50 164-214 21-71 (368)
465 TIGR01420 pilT_fam twitching m 92.5 0.19 4.9E-06 28.6 4.1 57 171-227 122-194 (350)
466 PRK10535 macrolide transporter 92.5 0.093 2.4E-06 30.7 2.4 10 354-363 465-474 (648)
467 cd03278 ABC_SMC_barmotin Barmo 92.5 0.11 2.7E-06 30.3 2.7 25 171-196 20-44 (197)
468 COG4181 Predicted ABC-type tra 92.5 0.092 2.4E-06 30.7 2.4 61 169-233 31-96 (228)
469 PRK05201 hslU ATP-dependent pr 92.5 0.14 3.6E-06 29.5 3.4 107 262-393 249-361 (442)
470 KOG0066 consensus 92.5 0.11 2.7E-06 30.3 2.7 46 165-210 281-326 (807)
471 COG1125 OpuBA ABC-type proline 92.4 0.055 1.4E-06 32.2 1.3 56 167-226 20-77 (309)
472 COG1618 Predicted nucleotide k 92.4 0.22 5.7E-06 28.2 4.3 28 175-202 6-33 (179)
473 COG4136 ABC-type uncharacteriz 92.4 0.49 1.2E-05 26.0 6.0 83 168-252 22-121 (213)
474 COG0378 HypB Ni2+-binding GTPa 92.3 0.84 2.1E-05 24.4 8.6 90 175-271 14-106 (202)
475 KOG0651 consensus 92.3 0.28 7.1E-06 27.6 4.7 142 77-227 75-222 (388)
476 TIGR02525 plasmid_TraJ plasmid 92.3 0.21 5.4E-06 28.3 4.1 46 163-210 140-185 (374)
477 PRK07133 DNA polymerase III su 92.3 0.85 2.2E-05 24.4 7.6 102 175-288 41-146 (718)
478 pfam03193 DUF258 Protein of un 92.3 0.13 3.3E-06 29.7 3.0 34 164-197 25-58 (161)
479 COG1118 CysA ABC-type sulfate/ 92.3 0.11 2.8E-06 30.2 2.6 28 169-196 23-50 (345)
480 cd03268 ABC_BcrA_bacitracin_re 92.3 0.11 2.7E-06 30.3 2.6 33 168-200 20-52 (208)
481 TIGR01192 chvA glucan exporter 92.3 0.11 2.7E-06 30.3 2.6 53 131-197 332-384 (592)
482 TIGR02397 dnaX_nterm DNA polym 92.3 0.1 2.5E-06 30.5 2.4 25 177-201 39-63 (363)
483 COG0541 Ffh Signal recognition 92.3 0.86 2.2E-05 24.3 10.8 91 175-273 101-194 (451)
484 KOG0733 consensus 92.2 0.67 1.7E-05 25.0 6.6 91 177-267 226-334 (802)
485 cd03266 ABC_NatA_sodium_export 92.2 0.08 2E-06 31.1 1.8 53 167-219 24-76 (218)
486 COG0488 Uup ATPase components 92.2 0.056 1.4E-06 32.1 1.0 35 167-201 22-56 (530)
487 pfam06068 TIP49 TIP49 C-termin 92.1 0.19 4.8E-06 28.7 3.7 39 164-203 39-79 (395)
488 PRK13873 conjugal transfer ATP 92.1 0.22 5.5E-06 28.3 4.0 35 175-210 442-476 (815)
489 PRK08058 DNA polymerase III su 92.1 0.2 5.1E-06 28.5 3.8 55 171-226 24-102 (329)
490 smart00072 GuKc Guanylate kina 92.1 0.74 1.9E-05 24.8 6.7 91 177-279 5-110 (184)
491 cd01428 ADK Adenylate kinase ( 92.1 0.14 3.5E-06 29.6 2.9 23 176-198 1-23 (194)
492 COG0645 Predicted kinase [Gene 92.0 0.69 1.8E-05 25.0 6.4 74 177-265 4-81 (170)
493 PRK07773 replicative DNA helic 92.0 0.47 1.2E-05 26.0 5.6 53 157-209 185-238 (868)
494 pfam00485 PRK Phosphoribulokin 92.0 0.18 4.5E-06 28.9 3.3 26 177-202 2-27 (196)
495 pfam03266 DUF265 Protein of un 91.9 0.32 8.1E-06 27.2 4.6 26 176-201 1-26 (168)
496 pfam08206 OB_RNB Ribonuclease 91.9 0.43 1.1E-05 26.3 5.3 47 56-109 1-47 (58)
497 PRK06995 flhF flagellar biosyn 91.9 0.32 8.3E-06 27.1 4.6 49 171-219 173-222 (404)
498 cd02023 UMPK Uridine monophosp 91.8 0.25 6.3E-06 27.9 4.0 24 177-200 2-25 (198)
499 PRK11054 helD DNA helicase IV; 91.8 0.34 8.6E-06 27.0 4.7 69 171-239 206-279 (684)
500 COG1135 AbcC ABC-type metal io 91.8 0.12 3E-06 30.0 2.4 58 167-226 25-85 (339)
No 1
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=0 Score=1017.36 Aligned_cols=416 Identities=71% Similarity=1.109 Sum_probs=411.7
Q ss_pred CCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf 54879997099899999999838988576667899999998752058748999998540477026750454866665560
Q gi|254780810|r 3 EMKLQELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDANYLAGPDDI 82 (423)
Q Consensus 3 ~m~l~eL~~~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~Di 82 (423)
.|++++|+++++.||+++|+++||+++++++|+|||++|++..++.++.++++|+|||++|||||||++.+||+++++|+
T Consensus 1 ~~~i~eL~~~~l~eL~~iA~~lgI~~~~~~~K~eLI~~Ilk~~a~~~~~i~~~GvLEi~~dGyGFLR~~~~nylp~~dDi 80 (416)
T PRK09376 1 MMNLSELKNKTLSELLELAEELGIENASRLRKQELIFAILKAQAEKGEDIFGEGVLEILPDGFGFLRSPDANYLPGPDDI 80 (416)
T ss_pred CCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCCCCCCCCCE
T ss_conf 98679973699999999999859987677899999999999998528958767999964898657057876888998883
Q ss_pred EEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 46010000122125987999886246888763000222255688788512443000200011223432477865321368
Q gi|254780810|r 83 YVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISS 162 (423)
Q Consensus 83 yVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~ 162 (423)
|||++|||+|+||+||.|.|.+|+|+.+++|++|.+|++|||.+|+.+..+++|++|||+||++++.+|+. |.++++
T Consensus 81 YVS~sqIrrf~LR~GD~V~G~vR~pke~Ery~aLl~V~~VNg~~pe~~~~r~~F~~LTPi~P~erl~LE~~---~~~~s~ 157 (416)
T PRK09376 81 YVSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRILFENLTPLYPNERLKLETG---TEDLST 157 (416)
T ss_pred EECHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCC---CCCCCC
T ss_conf 36899999809988888999886898888774337763228939899657354014877797223114568---876540
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHH
Q ss_conf 88998865510231222048778789999999999861188646999950878789999998403427823667888899
Q gi|254780810|r 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARH 242 (423)
Q Consensus 163 ~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~ 242 (423)
|+||+++|||||||++|||||++|||+||++||+++.+||||+++|++||||||||||||.|+++++|++||||+||..|
T Consensus 158 RiiDL~aPIGkGQRgLIVAPPkaGKT~lLq~IA~aI~~N~Pe~~liVLLIDERPEEVTdm~r~v~~eV~aStfD~~~~~H 237 (416)
T PRK09376 158 RVIDLVAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred CCEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHCCEEEEEECCCCCHHHH
T ss_conf 02110054135850037569987547999999999985699719999990489347778775046189997799987899
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEE
Q ss_conf 99999999999999977992899981638987762001366777677752024665046875225777777850012112
Q gi|254780810|r 243 VQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTA 322 (423)
Q Consensus 243 ~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~ 322 (423)
+++|++++++|||++|+|+||++++|||||+|||||.+.|++||++|||+|++||++||+|||||||+|+|||+|++||+
T Consensus 238 ~~vae~~lerAkRlvE~G~DVvillDSiTRLaRAyN~~~~~sGr~lsGG~D~~Al~~PKrfFGAARnie~GGSLTIiaTa 317 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999999999999876997899973157888886234699877544765777760556764100267767517787777
Q ss_pred EECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 01267655413889885226607898087884799974053354221015519999999999999996126937899999
Q gi|254780810|r 323 LVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFL 402 (423)
Q Consensus 323 lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l 402 (423)
||||||+|||+||+|||||+||||||||+||++|+|||||+.+|+||++|+|+++++++.+|.+||.|+.+++.|+|+.|
T Consensus 318 LveTgSrMDdvIfeEfkgTgNmEl~Ldr~la~~RifPAIdi~~SgTRkEelLl~~~e~~~~~~lRr~l~~~~~~ea~e~l 397 (416)
T PRK09376 318 LIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSPEELQKVWILRKILSPMDEVEAMEFL 397 (416)
T ss_pred HHCCCCCHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 75268625389999851578459998766775788640133357772576537999999999999987159979999999
Q ss_pred HHHHHCCCCHHHHHHHHHC
Q ss_conf 9984028998999986430
Q gi|254780810|r 403 IDKLKQTKDNKDFFYSMNK 421 (423)
Q Consensus 403 ~~~~~~~~~n~e~l~~~~k 421 (423)
+++|++|++|+|||.+|+|
T Consensus 398 ~~~l~~t~~N~efl~~~~~ 416 (416)
T PRK09376 398 LDKLKKTKTNEEFFDSMNR 416 (416)
T ss_pred HHHHHCCCCHHHHHHHHCC
T ss_conf 9998628989999998439
No 2
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=0 Score=1006.41 Aligned_cols=422 Identities=70% Similarity=1.086 Sum_probs=415.1
Q ss_pred CCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 97548799970998999999998389885766678999999987520587489999985404770267504548666655
Q gi|254780810|r 1 MSEMKLQELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDANYLAGPD 80 (423)
Q Consensus 1 M~~m~l~eL~~~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~ 80 (423)
|..|++++|+++.+.||.++|+++++++++.++|+|+||+|++.++++++.+.++|+|||++|||||||++.+||+++++
T Consensus 1 ~~~~~~~~L~~~~~~~l~~~a~~~~i~~~~~~~K~dlifailk~~~e~g~~~~~~GvLeil~dGfGFLR~~~~~yl~~~~ 80 (422)
T COG1158 1 VAEMSLTELKNKPLSELLELAEELGIENYSRLRKQDLIFAILKAQAEQGEEIFGDGVLEILPDGFGFLRSADSSYLPGPD 80 (422)
T ss_pred CCCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEECCCCCCCCCCC
T ss_conf 97544788740788999999998387506543078899999998764585586002798636774244057645578977
Q ss_pred CCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 60460100001221259879998862468887630002222556887885124430002000112234324778653213
Q gi|254780810|r 81 DIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDI 160 (423)
Q Consensus 81 DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~ 160 (423)
|+|||++|||+|+||+||.|.|.+|.|+.+++|++|.+|+.+||.+|+....+++|++|||.||++++.+|++.+ ..++
T Consensus 81 DiYvSpSQIRrf~LrtGD~v~G~vR~Pke~Ery~aLl~ve~vN~~~pe~~k~R~~F~~LTPlyP~erl~LE~~~~-~~~l 159 (422)
T COG1158 81 DIYVSPSQIRRFNLRTGDTVEGKVRPPKEGERYFALLKVEAVNGDDPEKAKNRVLFENLTPLYPNERLKLERENG-STDL 159 (422)
T ss_pred CEEECHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCC-CCCC
T ss_conf 667878998650676688776664488764300004778612689979961467765588888622035204788-7650
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHH
Q ss_conf 68889988655102312220487787899999999998611886469999508787899999984034278236678888
Q gi|254780810|r 161 SSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAA 240 (423)
Q Consensus 161 ~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~ 240 (423)
+.|+||+++|||||||++|+|||++|||+||+.||++|..|||||++|++||||||||||||.|+|+++||+||||+||.
T Consensus 160 s~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~geViaSTFDepp~ 239 (422)
T COG1158 160 STRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPPS 239 (422)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCEEEEECCCCCHH
T ss_conf 26676652656788465686698787338999999998637996499999934780677778875240698644888605
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEE
Q ss_conf 99999999999999999779928999816389877620013667776777520246650468752257777778500121
Q gi|254780810|r 241 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIG 320 (423)
Q Consensus 241 ~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~ 320 (423)
+|+++|++++++|+|++|+|+||+|++|||||+|||||.+.|++|+++|||+||+|||+||+|||||||+|+|||+|++|
T Consensus 240 ~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLsGGvD~nAL~~PKrFFGAARNIEeGGSLTIiA 319 (422)
T COG1158 240 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIA 319 (422)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCEECCCCCHHHHCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf 46899999999999888717868999656778998853667997774048738566048355421220554586341111
Q ss_pred EEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 12012676554138898852266078980878847999740533542210155199999999999999961269378999
Q gi|254780810|r 321 TALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIE 400 (423)
Q Consensus 321 t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~ 400 (423)
|+||||||+|||+||+|||||+||+|+|||+||++|+|||||+.+||||++|+|+++++++.+|.+|+.|+.+++.++|+
T Consensus 320 TALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRkEeLLl~~~~l~k~w~lRr~l~~md~~~a~e 399 (422)
T COG1158 320 TALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLSPDELQKMWVLRRILSPMDEIDAIE 399 (422)
T ss_pred HHHHHCCCCCCHHHHHHHCCCCCEEEEEHHHHHHCCCCCCEECCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 12441477511202534257775078860134441245302035677615765489999999999999736787489999
Q ss_pred HHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 99998402899899998643059
Q gi|254780810|r 401 FLIDKLKQTKDNKDFFYSMNKQN 423 (423)
Q Consensus 401 ~l~~~~~~~~~n~e~l~~~~k~~ 423 (423)
.|+++|++||+|+|||.+|++..
T Consensus 400 ~li~klk~Tk~N~eF~~~m~~~~ 422 (422)
T COG1158 400 FLIDKLKKTKTNDEFLEQMNKSK 422 (422)
T ss_pred HHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 99999871166899999853379
No 3
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=0 Score=936.38 Aligned_cols=366 Identities=57% Similarity=0.957 Sum_probs=358.8
Q ss_pred EEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCC------CCCCCEEECCCCC
Q ss_conf 4899999854047702675045486666556046010000122125987999886246888------7630002222556
Q gi|254780810|r 51 EIIGEGVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGE------RYFALLKVNAINF 124 (423)
Q Consensus 51 ~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~------~~~~L~rV~~vnG 124 (423)
.+.+.|+|||+ |||||||+ .+|+++++|+|||++||++|+||+||.|.|.+|+|++++ +|++|.+|++|||
T Consensus 288 LvPVaGildi~-d~y~FlRt--~~ylp~~~DvYvs~~qir~~~Lr~GD~v~G~vr~p~ege~~~~~~k~~~L~~v~~vNg 364 (667)
T PRK12678 288 LVPVAGILDVL-DNYAFVRT--SGYLPGPNDVYVSMNQVRKNGLRRGDAITGAVRAPREGEQRNQRQKFNPLVRLDSVNG 364 (667)
T ss_pred EEEEEEEEEEE-ECCEEEEC--CCCCCCCCCEEECHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEHHCCC
T ss_conf 24521178974-06116634--8988998775478999987199988987872018986555440012201045224179
Q ss_pred CCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 88788512443000200011223432477865321368889988655102312220487787899999999998611886
Q gi|254780810|r 125 DVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPE 204 (423)
Q Consensus 125 ~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~ 204 (423)
.+|+....++.|++|||+||.+++.||+. |..+++|+||+++|||||||+||||||++|||+||+.||++|..|||+
T Consensus 365 ~~~e~~~~r~~F~~Ltp~~P~erl~le~~---~~~~t~RiiDl~~PiGkGQRgLIVapPkaGKT~ll~~ia~ai~~N~pe 441 (667)
T PRK12678 365 MSPEEAKKRPEFGKLTPLYPNERLRLETE---PNKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQDIANAITTNNPE 441 (667)
T ss_pred CCHHHHCCCCCCCCCCCCCCCCEEECCCC---CCCCCHHHHEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 69899607675245777898642233467---765322230111356788454675799787259999999999856997
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCC
Q ss_conf 46999950878789999998403427823667888899999999999999999779928999816389877620013667
Q gi|254780810|r 205 CYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSS 284 (423)
Q Consensus 205 v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~ 284 (423)
|++||+||||||||||||.++++++||+||||+||..|+++|++++++|||++|+|+|||||+|||||||||||.+.|++
T Consensus 442 ~~l~vlLiDERPEEVTdm~r~v~geViaStfD~~~~~H~~vael~iErAkRlvE~g~DVvillDSiTRLaRAyN~~~p~s 521 (667)
T PRK12678 442 CHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPAS 521 (667)
T ss_pred EEEEEEECCCCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCC
T ss_conf 28999973788515667664046069986688988889999999999999987569977999640668888760446998
Q ss_pred CCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCC
Q ss_conf 77677752024665046875225777777850012112012676554138898852266078980878847999740533
Q gi|254780810|r 285 GKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDII 364 (423)
Q Consensus 285 g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~ 364 (423)
|+++|||+|++|||+||+|||+|||+|+|||||||+|+||||||+|||+||+|||||+||||+|||+||++||||||||.
T Consensus 522 Gr~lsGGvD~~Al~~PKrffGAARnie~GGSLTIlaTaLveTGSrmDevIfeEFKGTGNmEl~LdR~la~~RifPAidi~ 601 (667)
T PRK12678 522 GRILSGGVDSTALYPPKRFFGAARNIENGGSLTIIATALVETGSTMDTVIFEEFKGTGNAELKLDRKIADKRVFPAVDVN 601 (667)
T ss_pred CCCCCCCCCHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCC
T ss_conf 77346764867660107776777524767447675445530465067889988537664288862335645565311344
Q ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 5422101551999999999999999612693789999999840289989999864305
Q gi|254780810|r 365 KSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKDNKDFFYSMNKQ 422 (423)
Q Consensus 365 ~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~~n~e~l~~~~k~ 422 (423)
+|+||++|+|+++++++.+|.|||.|+.+++.|+|+.|+++|++|++|.|||.+|.|.
T Consensus 602 ~SgTR~eelLl~~~e~~~~~~lRr~l~~~~~~~a~e~l~~~l~~t~~N~efl~~~~kt 659 (667)
T PRK12678 602 PSGTRKEELLLSPDELAIVHKLRRVLSGLDSQQAIELLLSRLKKTKSNYEFLMQVQKT 659 (667)
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 5775067653799999999999998725998999999999986179889999998751
No 4
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=0 Score=934.87 Aligned_cols=378 Identities=61% Similarity=0.990 Sum_probs=373.1
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 99999987520587489999985404770267504548666655604601000012212598799988624688876300
Q gi|254780810|r 37 LMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFAL 116 (423)
Q Consensus 37 LI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L 116 (423)
|||+|++.+++++|.++++|+||+++|||||||++.+||+++|+|+|||++|||+|+||+||.|.|.+|+|+.++ +|
T Consensus 1 lif~il~~~~~~~g~~~~eGvLEil~dGyGFLR~~~~nYlp~pdDiYVS~sqIrrf~LR~GD~V~G~iR~p~~ge---aL 77 (379)
T PRK12608 1 MTFTLEKPVVQDNGAEIGRGVLEILGKGFGFLRSPERNYLPSPDDVYVSPALIRRFGLRTGDLVEGVIRAPREKE---TL 77 (379)
T ss_pred CHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCCCCCCCCCEEECHHHHHHCCCCCCCEEEEEECCCCCCH---HH
T ss_conf 947986998862995999999997589975835898788999988100999997549999998999863899874---20
Q ss_pred EEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 02222556887885124430002000112234324778653213688899886551023122204877878999999999
Q gi|254780810|r 117 LKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 117 ~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
.+|++|||.+|+.+..+++|++|||+||++++.+|++ +.++++|+||+++|||||||++|||||++|||+||++||+
T Consensus 78 ~~V~~VNg~~pe~~~~R~~F~~LTPi~P~erl~LE~~---~~~~s~RiiDL~aPIGkGQRgLIVAPPkaGKT~LLq~IA~ 154 (379)
T PRK12608 78 VRIDSVNGTDPEKLQRRKHFDDLTPLHPEERIVLETG---SDDLSMRVLDLVAPIGKGQRGLIVAPPRAGKTILLQQIAQ 154 (379)
T ss_pred EEEHHCCCCCHHHHCCCCCCCCCCCCCCCCEEECCCC---CCCCCCCEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 4145238949899557467556877799650440148---8764411031004634574012745898657899999999
Q ss_pred HHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 98611886469999508787899999984034278236678888999999999999999997799289998163898776
Q gi|254780810|r 197 SIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRA 276 (423)
Q Consensus 197 ~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA 276 (423)
++.+||||+++|++||||||||||||.|+++++|++||||+||..|+++|++++++|||++|+|+||++++|||||||||
T Consensus 155 aI~~NhPev~livLLIDERPEEVTdm~r~v~gEVvaSTfD~~~~~h~~vAel~lerAkrlvE~G~dVvillDSiTRlaRA 234 (379)
T PRK12608 155 AVAANHPDIHLMVLLIDERPEEVTDMKRSVKGEVYASTFDRPYDRHIRVAELVLERAKRLVEEGKDVVILLDSLTRLARA 234 (379)
T ss_pred HHHHCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf 99857998489999816893588888862370799977989989999999999999999987699689996517788998
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCC
Q ss_conf 20013667776777520246650468752257777778500121120126765541388988522660789808788479
Q gi|254780810|r 277 YNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKR 356 (423)
Q Consensus 277 ~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~ 356 (423)
||.+.+++||++|||+|++|++.||+|||+|||+|+|||+|++||+|+||||+|||+||+|||||+||||||||+||++|
T Consensus 235 yn~~~~~sGr~lsgg~d~~al~~pk~~Fgaar~ie~gGSlTiiaTaLveTgs~mD~~i~eefkgtgn~el~Ldr~la~~r 314 (379)
T PRK12608 235 YNSEVDSSGRTLSGGVDARALERPKRLFGAARKIEEGGSLTILATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKR 314 (379)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCC
T ss_conf 75336888861577869567500689853125777886632566663226664345889996326860899725577678
Q ss_pred CCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9974053354221015519999999999999996126937899999998402899899998643
Q gi|254780810|r 357 IFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKDNKDFFYSMN 420 (423)
Q Consensus 357 ~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~~n~e~l~~~~ 420 (423)
+|||||+.+|+||++|+|+++++++.+|.+||.|+.+++.|+|+.|++++++|++|+|||.+|+
T Consensus 315 ~fPAIdi~~SgTR~EelLl~~~e~~~~~~lRr~l~~~~~~ea~e~l~~~l~~t~~N~efl~~~~ 378 (379)
T PRK12608 315 VFPAIDIAKSGTRREELLLDSKELEKVRLLRRALASLKPVEAMEKLLEKLRETPDNAEFLRSVQ 378 (379)
T ss_pred CCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 8751155457762266548999999999999986179979999999999864899999998639
No 5
>TIGR02545 ATP_syn_fliI flagellar protein export ATPase FliI; InterPro: IPR013379 FliI proteins are involved in bacterial flagellum systems, acting to drive protein export for flagellar biosynthesis. The most closely related proteins are the YscN proteins of bacterial type III secretion systems.; GO: 0016887 ATPase activity, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=100.00 E-value=0 Score=759.77 Aligned_cols=355 Identities=24% Similarity=0.225 Sum_probs=322.3
Q ss_pred EEEEEECCCCE-EEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEE-------EECCCCCCCCCCEEECCCCCCCH
Q ss_conf 99854047702-67504548666655604601000012212598799988-------62468887630002222556887
Q gi|254780810|r 56 GVIEVLQDGFG-FLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSI-------RAPREGERYFALLKVNAINFDVP 127 (423)
Q Consensus 56 GvLEIl~dGyG-FLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~-------r~~~~~~~~~~L~rV~~vnG~~~ 127 (423)
|=+|.+....| --.........+.+|.+..+++..-.+++.||.|.-.. +.+..+++..+||||+|.+|+|+
T Consensus 28 G~~c~i~~~~~g~~~~~~aEVvGF~~~~~~lmP~~~~~Gi~~G~~V~~~~~~ad~~~~~~~~~~G~~LLGRv~D~lG~Pl 107 (439)
T TIGR02545 28 GDLCEIEPQEGGEEKHVLAEVVGFEGDRVILMPYEPLEGIRPGDRVFLLGDIADAGGRSLSIPVGDELLGRVIDALGRPL 107 (439)
T ss_pred CCEEEEECCCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCEECCCCCCC
T ss_conf 62789965888521015689998738836986446555624576578634314654566420277444032386787865
Q ss_pred H----HHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8----851244300020001122343247786532136888998865510231222048778789999999999861188
Q gi|254780810|r 128 E----RVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHP 203 (423)
Q Consensus 128 d----~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~ 203 (423)
| +++......++++.+++|....|.++.+|++||+|+||+|.|||+|||+||||+||+||||||+||||+.++|
T Consensus 108 Dg~G~~~~~~~~~~~~~l~~~~pnpl~R~rI~~~l~tGVRaId~lLT~GrGQR~GIFAGSGVGKSTLLGMiAr~t~AD-- 185 (439)
T TIGR02545 108 DGKGAGGGLIDATVYRPLRREPPNPLDRRRIEEVLDTGVRAIDALLTIGRGQRLGIFAGSGVGKSTLLGMIARYTEAD-- 185 (439)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCC--
T ss_conf 787788876656555565678307467875786112123101110365564102663377444788988875066588--
Q ss_pred CCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 64699995087878999999840-------34278236678888999999999999999997799289998163898776
Q gi|254780810|r 204 ECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRA 276 (423)
Q Consensus 204 ~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA 276 (423)
+++++|||||||||.||.+.. |++||+||||+||.+|+++|++|+++||||||||||||||||||||||||
T Consensus 186 --V~VIALIGERGREV~EFiE~~LG~eGl~kSVVVVATSD~spl~R~~aA~~A~~iAEYFRDqGk~VLL~~DSlTRFAmA 263 (439)
T TIGR02545 186 --VNVIALIGERGREVKEFIEDDLGEEGLKKSVVVVATSDESPLMRIRAAYAATAIAEYFRDQGKDVLLLMDSLTRFAMA 263 (439)
T ss_pred --EEEEEEECCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH
T ss_conf --789984446566431355430351102540799827998689998888999999999986498347762117889989
Q ss_pred HHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCC---CCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHH
Q ss_conf 2001366777677-7520246650468752257---77777850012112012676554138898852266078980878
Q gi|254780810|r 277 YNVLMPSSGKILT-GGVDANALQRPKRFFGAAR---NIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKI 352 (423)
Q Consensus 277 ~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar---~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~l 352 (423)
+||++++.||||+ .||+||+|...+++.|+|+ ..+++||||+||||||| ||||+|||+|.+||++||||||||+|
T Consensus 264 qREigLa~GEPP~tkGYpPSVF~~Lp~L~ERaG~~p~~~~~GsITa~yTVLVe-GDD~~ePiAD~~RgiLDGHIvLsR~l 342 (439)
T TIGR02545 264 QREIGLAAGEPPTTKGYPPSVFSELPRLLERAGIVPGAKGGGSITAFYTVLVE-GDDMNEPIADAVRGILDGHIVLSRKL 342 (439)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEE-CCCCCCHHHHHHHHHCCCEEEECHHH
T ss_conf 88999871787666789704899999999870864698887305689999873-68998737877500102207732267
Q ss_pred HHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CHHHHHHHH
Q ss_conf 8479997405335422101551999999999999999612693789999999840289--989999864
Q gi|254780810|r 353 ADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTK--DNKDFFYSM 419 (423)
Q Consensus 353 a~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~--~n~e~l~~~ 419 (423)
|++||||||||++|.||+|..+++++|++++.++|+++|.|++.|+|. +++.|+ +|.+....+
T Consensus 343 A~~G~YPaIDvl~SiSR~m~~i~~~e~~~~a~~~r~l~a~Y~~~eDLi----~iGaY~~GSdp~~D~AI 407 (439)
T TIGR02545 343 AERGHYPAIDVLRSISRLMPDIVSPEHNKAARKLRKLLATYKDAEDLI----RIGAYKKGSDPEVDKAI 407 (439)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCCCHHHHHHH
T ss_conf 645889875722227887776279889999999999999888889999----81786468887899985
No 6
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=100.00 E-value=0 Score=754.12 Aligned_cols=354 Identities=22% Similarity=0.231 Sum_probs=320.3
Q ss_pred EEEEEEEEC----CCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHH
Q ss_conf 999985404----7702675045486666556046010000122125987999886246888763000222255688788
Q gi|254780810|r 54 GEGVIEVLQ----DGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPER 129 (423)
Q Consensus 54 ~eGvLEIl~----dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~ 129 (423)
.-|-||-+. .+..-++. +...+..|..+..++....+|..|..|..++++++.+++..+||||.|..|+|+|+
T Consensus 25 ~vGELC~i~~nW~~~~~~~~A---EVVGf~~~~alLsPlg~~~G~~~g~~V~p~g~~~~i~vGe~LLGRVlDG~GrPlD~ 101 (430)
T TIGR02546 25 RVGELCLIKRNWPRDPSQLLA---EVVGFTGDEALLSPLGELSGISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDG 101 (430)
T ss_pred EEEEEEEEECCCCCCCCCCEE---EEEEEECCEEEEECCCCCCCCCCCCEEEECCCCEEEEECCCCCCEEECCCCCCCCC
T ss_conf 674034552237898566137---89987278677602665332565667862584202210600032004565770378
Q ss_pred HHCCCCHHH-------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 512443000-------2000112234324778653213688899886551023122204877878999999999986118
Q gi|254780810|r 130 VRNKIHFDN-------LTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNH 202 (423)
Q Consensus 130 ~~~~~~f~~-------l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~ 202 (423)
.++.+.-+- .+...++|.++.|+.+.+|+.||+|+||++.|||+|||+||||+||+||||||+|||++..++
T Consensus 102 ~~~~~~~~~~Qvt~~~~p~~a~pP~P~~R~~I~~PL~tGvRaiDGlLTcG~GQRiGIFA~aG~GKSTLL~~i~~g~~AD- 180 (430)
T TIGR02546 102 KGELPAGEIRQVTGETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGASAD- 180 (430)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCC-
T ss_conf 8878755643024645765678104876753346510146675434403665305787088861668999986189887-
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHH
Q ss_conf 864699995087878999999840-------3427823667888899999999999999999779928999816389877
Q gi|254780810|r 203 PECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCR 275 (423)
Q Consensus 203 ~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~Ar 275 (423)
++|++|||||||||+||.+.. |+++|+||||+|+..|++||++|+++|||||||||+|||||||||||||
T Consensus 181 ---v~V~ALIGERGREVREFiE~~lg~e~~~RsVlVvsTSDrss~eR~~AAy~ATaIAEYFRDQGk~VlLmmDSlTRfAR 257 (430)
T TIGR02546 181 ---VNVIALIGERGREVREFIEHLLGEEGRKRSVLVVSTSDRSSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFAR 257 (430)
T ss_pred ---EEEEEECCCCCHHHHHHHHHCCCHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHH
T ss_conf ---89986027876047888752078305242489960798667999999878879999999739907988402779999
Q ss_pred HHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHH
Q ss_conf 62001366777677-75202466504687522577777785001211201267655413889885226607898087884
Q gi|254780810|r 276 AYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIAD 354 (423)
Q Consensus 276 A~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~ 354 (423)
|+||++++.|||+. +|||||+|+..++|.|+|++.|+ ||||+|||||+| ||||+|||+||+||++||||||||+||+
T Consensus 258 A~REiGLAaGEP~aR~GyPPSVF~~LPRLLERaG~~e~-GSITA~YTVLvE-gDd~~dP~ADEvRSILDGHIvLsR~LA~ 335 (430)
T TIGR02546 258 ALREIGLAAGEPPARRGYPPSVFSSLPRLLERAGNSEK-GSITALYTVLVE-GDDMNDPIADEVRSILDGHIVLSRKLAE 335 (430)
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHCCHHHCCCCCCCC-CCEEEEEEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98778875378400257787366507501227861129-625345678762-7779984366554454236899899974
Q ss_pred CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CHHHHHHHHH
Q ss_conf 79997405335422101551999999999999999612693789999999840289--9899998643
Q gi|254780810|r 355 KRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTK--DNKDFFYSMN 420 (423)
Q Consensus 355 ~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~--~n~e~l~~~~ 420 (423)
++|||||||++|.||.|.++++++|++++.++|++|++|+++| +|+ +++.|+ ++.|..+-|+
T Consensus 336 ~~HyPAIDVLaS~SRvm~~vv~~eH~~aA~~lR~LLA~Y~e~e---~LI-~lGEY~~G~D~~~D~A~~ 399 (430)
T TIGR02546 336 RNHYPAIDVLASLSRVMSQVVSKEHRRAAGKLRRLLAKYKEVE---LLI-RLGEYQPGSDPETDKAID 399 (430)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH---HHH-HHCCCCCCCCHHHHHHHH
T ss_conf 1688635665236642367788789999999999999999998---898-744888998988999997
No 7
>TIGR01026 fliI_yscN ATPase FliI/YscN family; InterPro: IPR005714 Proteins in this entry show extensive homology to the ATP synthase F1 beta subunit, and are involved in type III protein secretion. They fall into the two separate functional groups outlined below. The first group, exemplified by the Salmonella typhimurium FliI protein (P26465 from SWISSPROT), is needed for flagellar assembly. Most structural components of the bacterial flagellum are translocated through the central channel of the growing flagellar structure by the type III flagellar protein-export apparatus in an ATPase-driven manner, to be assembled at the growing end. FliI is the ATPase that couples ATP hydrolysis to the translocation reaction , . The second group couples ATP hydrolysis to protein translocation in non-flagellar type III secretion systems. Often these systems are involved in virulence and pathogenicity. YscN (P40290 from SWISSPROT) from pathogenic Yersinia species, for example, energises the injection of antihost factors directly into eukaryotic cells, thus overcoming host defences .; GO: 0016887 ATPase activity, 0009058 biosynthetic process, 0015031 protein transport, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=733.08 Aligned_cols=371 Identities=22% Similarity=0.211 Sum_probs=326.0
Q ss_pred HHHHHHHHHCCCEEEEEEEEEEEC-CCCE--EEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEE----EECCCC-
Q ss_conf 999987520587489999985404-7702--67504548666655604601000012212598799988----624688-
Q gi|254780810|r 39 FSILKVLSGRDVEIIGEGVIEVLQ-DGFG--FLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSI----RAPREG- 110 (423)
Q Consensus 39 ~~Il~~~~~~~g~~~~eGvLEIl~-dGyG--FLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~----r~~~~~- 110 (423)
.+|.....++.|+...-|=+|.+. .|-. .++ .....+..+-+..+++...++++.||.|..+. .....+
T Consensus 28 ~~v~Gl~~ea~gp~~~vG~~c~I~~~g~~~~~~~---~EVVGf~~~~v~LmPy~~~~G~~~G~~V~~~~isae~~L~~~q 104 (455)
T TIGR01026 28 TKVKGLLIEAVGPQASVGDLCLIERKGSEGKEVV---AEVVGFNGEKVLLMPYEEVEGVEPGSKVLAKNISAEEGLSIKQ 104 (455)
T ss_pred EEEEEEEEEEECCCCCCCCEEEEEEECCCCCEEE---EEEEEEECCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 9985268985247766777789997378987799---9988520675675236544433534523320433002545574
Q ss_pred --CCCCCCEEECCCCCCCHHHHHC-CCCHHHCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf --8763000222255688788512-44300020--001122343247786532136888998865510231222048778
Q gi|254780810|r 111 --ERYFALLKVNAINFDVPERVRN-KIHFDNLT--PLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRT 185 (423)
Q Consensus 111 --~~~~~L~rV~~vnG~~~d~~~~-~~~f~~l~--p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~ 185 (423)
.+..+||||.+..|+|+|+.+. ...+.+.. .+.+++.+..|.+..+.+.||+|+||+|.|+|||||.||||++||
T Consensus 105 lP~G~~LLGRVld~~G~PiD~~~~~~~~~~~~~~~l~~~~~nPl~R~~i~~~~~tGVR~iD~LLTvGkGQR~GIFAGSGV 184 (455)
T TIGR01026 105 LPVGDGLLGRVLDGLGKPIDGKGKGFLDNVETEPALITAPINPLKREPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGV 184 (455)
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCEEECCCCCCCCCCCEEEEECCCC
T ss_conf 33687640244854687113777766654301255246898866763000210036453101035556650135503760
Q ss_pred CHHHHHHHHHH-HHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999-986118864699995087878999999840-------3427823667888899999999999999999
Q gi|254780810|r 186 GKTILLQNIAH-SIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLV 257 (423)
Q Consensus 186 gkt~ll~~ia~-~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~ 257 (423)
||||||+|||| ++.++ +.+++|||||||||.||++.. +++||+||+|+||.+|+++|+.|+.+||||+
T Consensus 185 GKStLlGMIARn~~~AD----v~ViALIGERGREV~EFIE~~LG~EGLkrSV~VVaTSD~SPl~R~~GAy~At~iAEYFr 260 (455)
T TIGR01026 185 GKSTLLGMIARNNTEAD----VNVIALIGERGREVKEFIEKDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFR 260 (455)
T ss_pred CHHHHHHHHHHCCCCCC----EEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHEEHHHHHHHH
T ss_conf 03445667630067898----27998643777741578863136566601179983688638888732640025435465
Q ss_pred HCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCC-CCCCC-CCEEEEEEEECCCCCC-CCH
Q ss_conf 77992899981638987762001366777677-75202466504687522577-77778-5001211201267655-413
Q gi|254780810|r 258 EYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARN-IKEGG-SLTIIGTALVDTGSRM-DEV 333 (423)
Q Consensus 258 e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~-~~~~G-s~T~~~t~lvetg~~~-d~~ 333 (423)
||||||||||||+||||+|+||++++.||||+ .||+|++|...+++.|+|++ ..++| |||+||||||| |||| +||
T Consensus 261 dqGk~VlLlmDSvTRfA~AqREiGLA~GEPP~~kGYtPSVF~~LP~LlERaG~G~~~~GGSITAFYTVLVe-GDD~s~eP 339 (455)
T TIGR01026 261 DQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSLLPRLLERAGKGASGKGGSITAFYTVLVE-GDDLSNEP 339 (455)
T ss_pred HCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEC-CCCCCCCC
T ss_conf 21870562020278998898899874377777777785488998999976068735779579888888641-56788777
Q ss_pred HHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--C
Q ss_conf 88988522660789808788479997405335422101551999999999999999612693789999999840289--9
Q gi|254780810|r 334 IFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTK--D 411 (423)
Q Consensus 334 i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~--~ 411 (423)
|+|++||++||||||||+||++||||||||++|.||.+..+++++|++.+.++|++||.|+++| +|+ +++.|+ |
T Consensus 340 iAD~~r~ILDGHIVLSR~LA~~g~YPAIdvl~S~SR~~~~i~s~~~~~~~~~fR~lLs~y~~~E---dLi-riG~Y~~GS 415 (455)
T TIGR01026 340 IADSVRGILDGHIVLSRALADRGHYPAIDVLASISRLMTAIVSEEHKKAARKFRELLSKYKENE---DLI-RIGAYKKGS 415 (455)
T ss_pred CCCCCCEEECCCEEECHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---HHH-HHCCCCCCC
T ss_conf 2431022551535524588617897863755568898874074889999999999999887613---231-220255878
Q ss_pred HHHHHHHHHC
Q ss_conf 8999986430
Q gi|254780810|r 412 NKDFFYSMNK 421 (423)
Q Consensus 412 n~e~l~~~~k 421 (423)
|.|....+++
T Consensus 416 d~e~D~AI~~ 425 (455)
T TIGR01026 416 DKELDKAIAK 425 (455)
T ss_pred CHHHHHHHHH
T ss_conf 8668999857
No 8
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=662.53 Aligned_cols=328 Identities=23% Similarity=0.228 Sum_probs=305.9
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCC
Q ss_conf 48666655604601000012212598799988624688876300022225568878851244300020001122343247
Q gi|254780810|r 73 ANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMEL 152 (423)
Q Consensus 73 ~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~ 152 (423)
.......++..+..++....++..|+.|..++++...+.++.+||||.+..|+|+|+.+........+...++|....|+
T Consensus 62 aEVvgf~~~~~~L~p~~~~~gv~~g~~V~~~~~~~~v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~ 141 (441)
T COG1157 62 AEVVGFNEERVLLMPFEPVEGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRR 141 (441)
T ss_pred EEEEEECCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
T ss_conf 79999728768996267655677887897459754236686665410066888577899998763231457997821026
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------
Q ss_conf 78653213688899886551023122204877878999999999986118864699995087878999999840------
Q gi|254780810|r 153 NNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------ 226 (423)
Q Consensus 153 ~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------ 226 (423)
++.+|++||+|+||.|.|+|+|||.+|||++|+||||||+|||++..++ +++++|||||||||+||.+..
T Consensus 142 ~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKStLLgMiar~t~aD----v~ViaLIGERGREVrEFIE~~Lg~egl 217 (441)
T COG1157 142 PIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARNTEAD----VNVIALIGERGREVREFIEKDLGEEGL 217 (441)
T ss_pred CCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCC----EEEEEEEECCCHHHHHHHHHHCCHHHC
T ss_conf 5466454561444010022467467887169986899999996246698----799997606640599999986023303
Q ss_pred -CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHH
Q ss_conf -342782366788889999999999999999977992899981638987762001366777677-752024665046875
Q gi|254780810|r 227 -QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFF 304 (423)
Q Consensus 227 -~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~ 304 (423)
++++|+||+|+||.+|+++|++|+++||||||||+|||++|||+||||||+||++.+.||+|+ .||+|++|...++|.
T Consensus 218 ~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~Ll 297 (441)
T COG1157 218 KRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLL 297 (441)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 52699997898898999888999999999998679859999613889999998888752899866898955988748988
Q ss_pred HCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHH
Q ss_conf 22577777785001211201267655413889885226607898087884799974053354221015519999999999
Q gi|254780810|r 305 GAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVF 384 (423)
Q Consensus 305 ~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~ 384 (423)
++|++. +.||||+|||||+| ||||+|||+|++||++||||||||+||++||||||||++|.||+|.++++++|++.+.
T Consensus 298 ERaG~~-~~GsITafYTVLve-GDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i~~~~h~~~a~ 375 (441)
T COG1157 298 ERAGNG-DKGSITAFYTVLVE-GDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQIVSEEHRKAAR 375 (441)
T ss_pred HHCCCC-CCCCEEEEEEEEEE-CCCCCCCHHHHHHHHCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 604899-99817899999850-6888885045666422652897386885599997446777877766408999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999612693789999999840289
Q gi|254780810|r 385 MLRRIVSSMNSSDAIEFLIDKLKQTK 410 (423)
Q Consensus 385 ~~r~~l~~~~~~e~~~~l~~~~~~~~ 410 (423)
++|++|+.|+++|.+ + +++.|+
T Consensus 376 ~~r~lls~y~e~edL---i-~iGaY~ 397 (441)
T COG1157 376 RLRQLLSRYEENEDL---I-RIGAYQ 397 (441)
T ss_pred HHHHHHHHHHHHHHH---H-HHCCCC
T ss_conf 999999998877899---9-863856
No 9
>TIGR00767 rho transcription termination factor Rho; InterPro: IPR004665 Members of this family have a related but highly variable long, highly charged insert near the amino end. The proteins differ in the specificity of RNA binding.; GO: 0003715 transcription termination factor activity, 0005524 ATP binding, 0006353 transcription termination.
Probab=100.00 E-value=0 Score=618.12 Aligned_cols=418 Identities=65% Similarity=1.039 Sum_probs=411.0
Q ss_pred CCHHHHHCCCHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf 4879997099899999999838988--57666789999999875205874899999854047702675045486666556
Q gi|254780810|r 4 MKLQELKNKSPTKLLAFAESLEIEN--ANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDANYLAGPDD 81 (423)
Q Consensus 4 m~l~eL~~~~l~EL~eiAkelgIe~--~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~D 81 (423)
+.+.+|+.+.+.++..++..+++++ ...++|+++++.+++...+.++.+.+.|++|+++|||||+|.+..+|+++++|
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~g~~~~~~~~~~~~~~d 80 (420)
T TIGR00767 1 LSLEELKNKPLEELRKLAEELGLENEDLSGLKKSELIFAILKAHAEQGGLLFGEGVLEVLPDGYGFLRSPDNNYLPGPDD 80 (420)
T ss_pred CCHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 95134442016899999876043201333444678999999853201551110002533115420000465445677553
Q ss_pred CEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 04601000012212598799988624688876300022225568878851244300020001122343247786532136
Q gi|254780810|r 82 IYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDIS 161 (423)
Q Consensus 82 iyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~ 161 (423)
+|++++++++|+++.||.+.|..+.|+.+++|+.+.+++.+|+.+++....++.|+.++|.||.+++.++....++..++
T Consensus 81 ~~~~p~~~~~~~~~~gd~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pl~p~~~~~~~~~~~~~~~~~ 160 (420)
T TIGR00767 81 IYVSPSQIRRFGLRTGDTVEGKIRSPKEGEKYFALLKVESVNGDDPDKAKERPLFDNLTPLYPNERLKLERGNTDPEDLS 160 (420)
T ss_pred CEECHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHEEEECCCCCCCHHHHHHCCCCCCCCCCCCHHHEECCCCCCCHHHH
T ss_conf 01147677652044575133110176322112110011002676501233202333345445410210014677511467
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHH
Q ss_conf 88899886551023122204877878999999999986118864699995087878999999840342782366788889
Q gi|254780810|r 162 SRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAAR 241 (423)
Q Consensus 162 ~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~ 241 (423)
.|++|+++|+|+|||++|++||++|||++++.+++++..|||++++++++++|||+||+|+.+.++++++++|||+||..
T Consensus 161 ~~~~~~~~p~g~g~~~l~~~pp~~g~~~~~~~~~~~~~~~~p~~~l~~~l~d~~p~~~~~~~~~~~g~~~~~~~d~~~~~ 240 (420)
T TIGR00767 161 TRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIANAITRNHPEVELIVLLIDERPEEVTDLQRSVKGEVVASTFDEPPSR 240 (420)
T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 78887651036775303651775442688888887763268743799886336622567777764212321001344101
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEE
Q ss_conf 99999999999999997799289998163898776200136677767775202466504687522577777785001211
Q gi|254780810|r 242 HVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGT 321 (423)
Q Consensus 242 ~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t 321 (423)
|+++++++++.|++++++++||++++||+||++||||.+.|++|+.++||+++++++.|++|||++|++++|||+|+++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~p~~g~~l~gg~~~~~~~~p~~~~g~~~~~~~gg~l~~~~~ 320 (420)
T TIGR00767 241 HVQVAELVLEKAKRLVEHKKDVVILLDSITRLARAYNTVTPPSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIAT 320 (420)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCHHHHHHHCCCCCCCCEEEEEH
T ss_conf 24688999998888763256347740235676665410366666322156450120141455300102246652222100
Q ss_pred EEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 20126765541388988522660789808788479997405335422101551999999999999999612693789999
Q gi|254780810|r 322 ALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEF 401 (423)
Q Consensus 322 ~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~ 401 (423)
++++||+++|+.|+++|+|++|++++|+|.++++++|||+|+.+|+||.++.+++++++..+|.+|+.++.+++.++++.
T Consensus 321 ~~~~~g~~~d~~~~~~~~g~g~~~~~l~~~~~~~~~~p~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (420)
T TIGR00767 321 ALVDTGSRMDEVIFEEFKGTGNLELHLDRKLADRRLFPAIDIKKSGTRKEELLLSPEELQKLWLLRKVLSPLDDVEALEL 400 (420)
T ss_pred HHHHCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 12313651013444432277750111001333211022101234565212320377888899999887404450578999
Q ss_pred HHHHHHCCCCHHHHHHHHHC
Q ss_conf 99984028998999986430
Q gi|254780810|r 402 LIDKLKQTKDNKDFFYSMNK 421 (423)
Q Consensus 402 l~~~~~~~~~n~e~l~~~~k 421 (423)
++++++++++|.+|+..+++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~ 420 (420)
T TIGR00767 401 LLEKLKKTKTNEEFLELLNE 420 (420)
T ss_pred HHHHHHHCCCHHHHHHHHCC
T ss_conf 99987511323689997519
No 10
>TIGR00962 atpA ATP synthase F1, alpha subunit; InterPro: IPR005294 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the alpha subunit found in the F1 complex of F-ATPases. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha-subunit contains a highly conserved adenine-specific non-catalytic nucleotide-binding domain, with a conserved amino acid sequence of Gly-X-X-X-X-Gly-Lys. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself is driven by the movement of protons through the F0 complex C subunit . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex.
Probab=100.00 E-value=0 Score=627.72 Aligned_cols=398 Identities=17% Similarity=0.137 Sum_probs=363.4
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCC----CCCCCCCCEEEC
Q ss_conf 0998999999998389885766678999999987520587489999985404770267504548----666655604601
Q gi|254780810|r 11 NKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDAN----YLAGPDDIYVSP 86 (423)
Q Consensus 11 ~~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~----yl~~~~DiyVs~ 86 (423)
+++..|+.++.++ .|++|...... .+++++....||+++++|+-+++. +.|..+.+| .+|+++|-++.+
T Consensus 1 ~l~~~Ei~~~I~~-~I~~f~~~~~~---~evG~V~sVgDGiArv~GL~~vm~---~El~eF~~G~~GiAlNLEedsVG~v 73 (520)
T TIGR00962 1 QLKLEEISELIKQ-QIKNFEKDIEV---EEVGTVVSVGDGIARVYGLENVMS---GELVEFEGGVQGIALNLEEDSVGAV 73 (520)
T ss_pred CCCHHHHHHHHHH-HHHCCCCEEEE---ECCCEEEEECCCEEEEEECHHHHH---CCEEECCCCCEEEEEEECCCCEEEE
T ss_conf 9877799999999-86262510133---036279983387899960110140---1002557895899997135862489
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 00001221259879998862468887630002222556887885124430002000112234324778653213688899
Q gi|254780810|r 87 SQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVID 166 (423)
Q Consensus 87 slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id 166 (423)
.++..++|++|+.|++|++++++|++..+||||++.+|+|+||++++...+..+.+.++|+++.|.+|+||+|||+++||
T Consensus 74 i~Gd~~~i~EG~~VKRTg~il~vPVG~~llGRvVn~LG~PiDGkGpI~~~~~~~~E~~APGv~~RkSV~ePlQTGIkAID 153 (520)
T TIGR00962 74 ILGDYSNIREGSTVKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPIESDEFRPIEKIAPGVIERKSVHEPLQTGIKAID 153 (520)
T ss_pred EECCCCCCCCCCCCCCCCHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHH
T ss_conf 97886665326503203200032457568832684577865777767766634321458855214667873000055764
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC------CCCEEEEEECCCCHHHHHHHHHHH-------CCEEEEC
Q ss_conf 886551023122204877878999999999986118------864699995087878999999840-------3427823
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNH------PECYLIVLLIDERPEEVTDMQRSV-------QGEVISS 233 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~------~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~s 233 (423)
+|+|||||||.||+|+++||||+++.+.+-|...+| .||+|||+.|||+...|...++.+ ++.||+|
T Consensus 154 AliPIGRGQRELIIGDRqTGKTavAIDtIiNQk~~~~~~~~~~dv~CvYVAIGQK~StvA~vv~~LE~~GAM~YTiVV~A 233 (520)
T TIGR00962 154 ALIPIGRGQRELIIGDRQTGKTAVAIDTIINQKDSGELGDEKKDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAA 233 (520)
T ss_pred CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 14689876222342326667305655777730577656786556489996207535689999999753487111033674
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCC-----CCCCCCCCCCCCHHHHHHCHHHHHCCC
Q ss_conf 667888899999999999999999779928999816389877620013-----667776777520246650468752257
Q gi|254780810|r 234 TFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLM-----PSSGKILTGGVDANALQRPKRFFGAAR 308 (423)
Q Consensus 234 t~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~-----~~~g~~~~gg~~~~~l~~~~~~~~~ar 308 (423)
|+++|+.+++.+||+++++|||||++||||||+||+||++|.|||+++ ||++|.++|++|+- |.+.|++||+
T Consensus 234 ~ASdsA~lqYLAPY~G~tmaEyF~d~GkhaLIiYDDLSKqA~AYR~iSLLLRRPPGREAyPGDVFYL---HSRLLERAAK 310 (520)
T TIGR00962 234 SASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYL---HSRLLERAAK 310 (520)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH---HHHHHHHHHH
T ss_conf 1677212454206889999999986597379997474078999999998718865871699740145---4568999864
Q ss_pred CCCC----------CCC-CEEEEEEEECCCC-CCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 7777----------785-0012112012676-554138898852266078980878847999740533542210155199
Q gi|254780810|r 309 NIKE----------GGS-LTIIGTALVDTGS-RMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVE 376 (423)
Q Consensus 309 ~~~~----------~Gs-~T~~~t~lvetg~-~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~ 376 (423)
.+++ .|+ ..+.|.+++||.- |.+.+|++|+.||+||+|+|+.+||++|++||||+.-|+||+..+.+.
T Consensus 311 LsdeYve~FtkGevkGgtGSlTALPIIETQAGDvSAYIPTNVISITDGQIFLesdLFn~GiRPAINvGlSVSRVGgAAQi 390 (520)
T TIGR00962 311 LSDEYVEKFTKGEVKGGTGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQI 390 (520)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCEEEECCCCEEECCCCHHHHHHHHHCCCCCCCEECCEEEEECCHHHHH
T ss_conf 07888854305632466535236772252148786630787135245511210201106898714175667442035776
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHH--------HHHHCCCCHHHHHHH
Q ss_conf 999999999999961269378999999--------984028998999986
Q gi|254780810|r 377 RQDLQKVFMLRRIVSSMNSSDAIEFLI--------DKLKQTKDNKDFFYS 418 (423)
Q Consensus 377 ~~~~~~~~~~r~~l~~~~~~e~~~~l~--------~~~~~~~~n~e~l~~ 418 (423)
+.+.+.+..||..||+|+|+|||-.+- +.|++.+.-.|+|+|
T Consensus 391 KAmK~vaG~LrLeLAQYRELeAFsQFaSDLD~ATk~qLerG~R~vElLKQ 440 (520)
T TIGR00962 391 KAMKQVAGSLRLELAQYRELEAFSQFASDLDEATKAQLERGKRLVELLKQ 440 (520)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 65554235224557548899888640122348999998606723420006
No 11
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=610.56 Aligned_cols=326 Identities=21% Similarity=0.231 Sum_probs=306.6
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCC
Q ss_conf 48666655604601000012212598799988624688876300022225568878851244300020001122343247
Q gi|254780810|r 73 ANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMEL 152 (423)
Q Consensus 73 ~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~ 152 (423)
.......+|....+++....+|+.|+.|..++++.++|++..+||||.+..|+|+|+++++...+..+...+++.+..|.
T Consensus 67 aEVVgf~~~~v~l~p~g~~~Gi~~G~~V~~~g~~~~VpVG~~lLGRVvd~lG~PlDg~g~i~~~~~~p~~~~~p~pl~R~ 146 (451)
T PRK05688 67 AEVMGFSGDKVYLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGGMKAEDWVPMDGPTINPLNRD 146 (451)
T ss_pred EEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHCC
T ss_conf 99922549979999887877889999999689987777582535888887764268999989873455668998835517
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------
Q ss_conf 78653213688899886551023122204877878999999999986118864699995087878999999840------
Q gi|254780810|r 153 NNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------ 226 (423)
Q Consensus 153 ~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------ 226 (423)
++.+|++||+|+||+|+|||||||.+|||++|+|||+|+.||+++..++ +++++|||||+|||.||.+..
T Consensus 147 ~i~epl~TGIraID~l~pigrGQR~gIfggsGvGKS~Ll~~i~r~~~ad----v~Vi~lIGERgrEv~efi~~~l~~~~~ 222 (451)
T PRK05688 147 PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD----IIVVGLIGERGREVKEFIEHILGEEGL 222 (451)
T ss_pred CCCCCEECCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC----EEEEEEEEEEHHHHHHHHHHHHHCCCC
T ss_conf 8786200384688454672467564210488986899999998852798----699996127759999999998515674
Q ss_pred -CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHH
Q ss_conf -342782366788889999999999999999977992899981638987762001366777677-752024665046875
Q gi|254780810|r 227 -QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFF 304 (423)
Q Consensus 227 -~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~ 304 (423)
+++||++|+|+||.+|+++|++|+++||||+++|+|||++|||+||||+||||++...||+|+ .||+|++|+..+++.
T Consensus 223 ~~svvV~atsd~~p~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~A~A~REisl~~gepP~~~GYppsvf~~l~~Ll 302 (451)
T PRK05688 223 KRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLV 302 (451)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 30589833888987999999987655899998679825999705577788888899875899876687844887737888
Q ss_pred HCCCCCCC-CCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf 22577777-78500121120126765541388988522660789808788479997405335422101551999999999
Q gi|254780810|r 305 GAARNIKE-GGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKV 383 (423)
Q Consensus 305 ~~ar~~~~-~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~ 383 (423)
++|++.+. +||||+||||++| |||++|||++++++++||||||||+||++|||||||+++|.||++..+++++|++.+
T Consensus 303 ERag~~~~g~GSITal~tVlv~-gdD~~dPi~d~~~silDGhIvLsr~la~~G~yPAIDvl~SvSRvm~~i~~~~h~~~a 381 (451)
T PRK05688 303 ERAGNAEPGGGSITAFYTVLSE-GDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRA 381 (451)
T ss_pred HHHCCCCCCCCCEEEEEEEECC-CCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHH
T ss_conf 6413799999220164677503-887677733445655062599848788669999828752665423333129999999
Q ss_pred HHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999961269378999999
Q gi|254780810|r 384 FMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 384 ~~~r~~l~~~~~~e~~~~l~ 403 (423)
..+|++|+.|.+.+.+..+.
T Consensus 382 ~~~r~~la~Y~e~~dLi~~g 401 (451)
T PRK05688 382 QRFKQLWSRYQQSRDLISVG 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999868889999985
No 12
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=0 Score=609.04 Aligned_cols=323 Identities=20% Similarity=0.225 Sum_probs=304.9
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
......+|....+++....+|+.|+.|..+++++.++++..+||||.+..|+|+|++++....+..+...++|.+..|.+
T Consensus 62 EVVgf~~~~~~l~p~~~~~Gi~~G~~V~~~g~~~~vpvG~~lLGRV~D~~G~PlDg~~~~~~~~~~pi~~~~p~p~~R~~ 141 (439)
T PRK06936 62 EVIGFAQHQALLTPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRL 141 (439)
T ss_pred EEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHCCC
T ss_conf 99988389899996778667899999997899867775704228888888875589999987876204588978420268
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
+.+|++||+|+||+|+|||+|||.+|||++|+|||+|+.||+++.+++ ++|+++||||+|||.||.+..
T Consensus 142 i~epl~TGIraID~llt~g~GQR~gIfagsGvGKs~Ll~~i~r~~~ad----v~V~alIGERgrEv~efie~~l~~~gl~ 217 (439)
T PRK06936 142 IETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD----VTVLALIGERGREVREFIESDLGEEGLR 217 (439)
T ss_pred CCCCCCCCCEEEECCCCHHCCCEEECCCCCCCCHHHHHHHHHHHHCCC----CEEEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf 787422685555246863105701023699998899999997643269----5799980730899999999864125431
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf 342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~ 305 (423)
+++||++|+|+||.+|+++|++|+++||||+|+|+|||++|||+||||+||||++.+.||+|+ .||+|++++..+++.+
T Consensus 218 rsvvV~atsd~p~~~R~~aa~~a~aiAEyFrd~G~~VLl~~DslTR~A~A~REI~l~~gepP~~~GYppsvf~~l~~l~E 297 (439)
T PRK06936 218 KAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLME 297 (439)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 06999618989989999999887788999985898489993567899999989998668999876779509988788887
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 25777777850012112012676554138898852266078980878847999740533542210155199999999999
Q gi|254780810|r 306 AARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFM 385 (423)
Q Consensus 306 ~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~ 385 (423)
+|++.. .||||++||||+| |||++|||+|++++++||||||||+||++||||||||++|.||++..+++++|++.+..
T Consensus 298 Rag~~~-~GSITa~~tVl~~-gdD~~dPi~d~~~silDGhivLsR~la~~g~yPAIDvl~S~SRvm~~v~~~~h~~~a~~ 375 (439)
T PRK06936 298 RAGQSD-KGSITALYTVLVE-GDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLASASRVMNQIVSKEHKTWAGR 375 (439)
T ss_pred HCCCCC-CCCEEEEEEEEEC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHH
T ss_conf 255899-9745765445504-88777771565666626069984878866999981874045444521226999999999
Q ss_pred HHHHHHCCCCHHHHHHH
Q ss_conf 99996126937899999
Q gi|254780810|r 386 LRRIVSSMNSSDAIEFL 402 (423)
Q Consensus 386 ~r~~l~~~~~~e~~~~l 402 (423)
+|++|+.|.++|.+..+
T Consensus 376 ~r~~la~y~e~edli~i 392 (439)
T PRK06936 376 LRELLAKYEEVELLLQI 392 (439)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999989999999985
No 13
>PRK07594 type III secretion system ATPase; Validated
Probab=100.00 E-value=0 Score=608.17 Aligned_cols=322 Identities=21% Similarity=0.217 Sum_probs=298.3
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
......+|.+..+++....+|+.|+.|..+++++.++++..+||||.+..|+|+|+++ .+.....+...+++.+..|.+
T Consensus 56 EVvgf~~~~~~l~~~~~~~Gi~~G~~V~~~g~~~~V~vG~~lLGRVvd~lG~PiDg~~-~~~~~~~~~~~~pp~p~~R~~ 134 (433)
T PRK07594 56 EVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPDVCWKDYDAMPPPAMVRQP 134 (433)
T ss_pred EEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCEEECCHHHCCCEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999979979999788877789999999689974787287332787578876358999-888763525678949400267
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
+.+|++||+|+||+|+|||+|||.+|||++|+|||+|+.||+++..++ ++|+++||||+|||.||.+..
T Consensus 135 i~epl~TGIkaID~l~pigrGQR~gIfgg~GvGKTtLl~~i~~~~~ad----v~V~~lIGERgrEv~efie~~~~~~~~~ 210 (433)
T PRK07594 135 ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD----SNVLVLIGERGREVREFIDFTLSEETRK 210 (433)
T ss_pred CCCCCCCCCEEHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCC----CEEEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf 786143674000135771247874204789998558999998424798----1599994100488999999865336620
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf 342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~ 305 (423)
+++||++|+|+||..|++++++|+++||||+++|+|||++||||||||+||||++...||+|+ +||+|++|+..++|++
T Consensus 211 rsvvV~atsd~p~~~R~~a~~~a~aiAEyFrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~gYppsvf~~l~~LlE 290 (433)
T PRK07594 211 RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE 290 (433)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 38999955889999999998776678999986696489973438889999878998647999878889549888788887
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 25777777850012112012676554138898852266078980878847999740533542210155199999999999
Q gi|254780810|r 306 AARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFM 385 (423)
Q Consensus 306 ~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~ 385 (423)
+|++.+ .||||++|||++| |+|++|||+++++|++||||+|||+||++|||||||++.|.||++..+++++|++.+..
T Consensus 291 Rag~~~-~GSITa~~tVlv~-gdD~~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~SvSRv~~~i~~~~h~~~a~~ 368 (433)
T PRK07594 291 RTGMGE-KGSITAFYTVLVE-GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI 368 (433)
T ss_pred HHCCCC-CCCEEEEEEEECC-CCCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCHHHHCHHHHHHHHHH
T ss_conf 513799-9756566556535-88666862787776614599983899967999980886056444255462999999999
Q ss_pred HHHHHHCCCCHHHHHHH
Q ss_conf 99996126937899999
Q gi|254780810|r 386 LRRIVSSMNSSDAIEFL 402 (423)
Q Consensus 386 ~r~~l~~~~~~e~~~~l 402 (423)
+|++|+.|+++|.+..+
T Consensus 369 ~r~~la~y~e~edli~~ 385 (433)
T PRK07594 369 LRRCLALYQEVELLIRI 385 (433)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999983
No 14
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=0 Score=606.31 Aligned_cols=364 Identities=22% Similarity=0.217 Sum_probs=322.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEE------EEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCE
Q ss_conf 98857666789999999875205874899999------854047702675045486666556046010000122125987
Q gi|254780810|r 26 IENANVMRKQELMFSILKVLSGRDVEIIGEGV------IEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDT 99 (423)
Q Consensus 26 Ie~~~~l~K~eLI~~Il~~~~~~~g~~~~eGv------LEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~ 99 (423)
++.+...+ ..++.....++.+.++|. ++.+..+.|-+. .........++..+.+++....+|+.|+.
T Consensus 16 l~~~~~~~------~~G~V~~v~g~~i~~~G~~a~iGelc~i~~~~g~~~-~~aEVvgf~~~~~~l~p~~~~~gi~~G~~ 88 (441)
T PRK09099 16 LAALAAVR------RTGKVLEVIGTLLRVSGLDVTLGELCELRQRDGTLL-QRAEVVGFSRDVALLSPFGELGGLSRGTR 88 (441)
T ss_pred HHCCCCCE------EEEEEEEEECCEEEEEECCCCCCCEEEEECCCCCCC-CEEEEEEEECCEEEEEECCCCCCCCCCCE
T ss_conf 50477530------466999997819999817888788699984899711-02589998689899998878667889999
Q ss_pred EEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99988624688876300022225568878851244300020001122343247786532136888998865510231222
Q gi|254780810|r 100 VEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLI 179 (423)
Q Consensus 100 V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i 179 (423)
|..++++.+++++..+||||.+..|+|+|+++++...+..+...++|.+..|.++.+|++||+|+||+|+|||||||.+|
T Consensus 89 V~~tg~~~~VpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~pi~~~~p~p~~R~~i~epl~TGIraID~l~pigrGQR~gI 168 (441)
T PRK09099 89 VIGLGRPLSVPVGPALLGRVIDGLGEPIDGRGPLDCDTLVPVIAAPPDPMSRRMIEAPLPTGVRIVDGLMTLGEGQRMGI 168 (441)
T ss_pred EEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEE
T ss_conf 99789963787470414888567765568997888765887516798820025778741278562236678034763300
Q ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 04877878999999999986118864699995087878999999840-------34278236678888999999999999
Q gi|254780810|r 180 VAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 180 ~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~ 252 (423)
||++|+|||+|+.||+++..++ ++|+++||||++||.||.+.. +++||++|+|+||.+|++++++|+++
T Consensus 169 f~gsGvGKstLl~~iar~~~~d----v~V~~lIGeRgrEv~efi~~~~~~~~l~~svvv~atsd~~~~~R~~a~~~a~ai 244 (441)
T PRK09099 169 FAPAGVGKSTLMGMFARGTQCD----VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYAATAI 244 (441)
T ss_pred ECCCCCCHHHHHHHHHHHHCCC----CEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 1589887899999898751368----616886372138999999997624563201798615889988999987750157
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 9999977992899981638987762001366777677-752024665046875225777777850012112012676554
Q gi|254780810|r 253 AKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMD 331 (423)
Q Consensus 253 a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d 331 (423)
||||+++|+|||++|||+||||+||||++...||+|+ .||+|++++..++|.++|++.+ +||||++|||+++ |+|++
T Consensus 245 AEyfrd~Gk~VLl~~DslTr~A~A~REisl~~gepP~~~gYp~~vf~~l~~l~ERag~~~-~GSITai~tVl~~-~dd~~ 322 (441)
T PRK09099 245 AEYFRDRGKRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGE-HGSITALYTVLAE-DDSGS 322 (441)
T ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEEEEEECC-CCCCC
T ss_conf 889986698189970767799999999998657999856677209988789887403789-9855344445506-88777
Q ss_pred CHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 13889885226607898087884799974053354221015519999999999999996126937899999
Q gi|254780810|r 332 EVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFL 402 (423)
Q Consensus 332 ~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l 402 (423)
|||+|++++++||||+|||+||++||||||||+.|.||++..+++++|++.+..+|++|+.|+++|.+..+
T Consensus 323 ~pi~d~~~si~DGhivLsr~la~~g~yPAIdvl~SvSR~~~~~~~~~~~~~a~~~r~~la~y~e~e~li~~ 393 (441)
T PRK09099 323 DPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRRLLAKHREVETLLQV 393 (441)
T ss_pred CCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87678777670638998587886699987177415542443441599999999999999989999999973
No 15
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=602.40 Aligned_cols=356 Identities=22% Similarity=0.231 Sum_probs=319.4
Q ss_pred HHHHHHHHHHCCCEEEEEEE------EEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 99999875205874899999------854047702675045486666556046010000122125987999886246888
Q gi|254780810|r 38 MFSILKVLSGRDVEIIGEGV------IEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGE 111 (423)
Q Consensus 38 I~~Il~~~~~~~g~~~~eGv------LEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~ 111 (423)
..+++++....++.+.++|. +|.+.+ .+. ........+|.+..+++....+|+.|+.|..++++..+|+
T Consensus 19 ~~~~GrV~~V~g~~i~a~G~~~~iGe~c~i~~-~~~----~aeVvgf~~~~v~l~p~~~~~gi~~G~~V~~~g~~~~vpV 93 (432)
T PRK06793 19 YTKVGKVHSVQEQFFVAKGPKAKIGDVCFVGE-HNV----LCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPR 93 (432)
T ss_pred CEEEEEEEEEECEEEEEEECCCCCCCEEEECC-CCE----EEEEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCEEEC
T ss_conf 44788999993519999937987589899868-981----8999998589399998878778899999997999757888
Q ss_pred CCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf 76300022225568878851244300020001122343247786532136888998865510231222048778789999
Q gi|254780810|r 112 RYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILL 191 (423)
Q Consensus 112 ~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll 191 (423)
+..+||||.++.|+|+|+.++....+..+...|++.+..|.++.+|++||+|+||.|+|||||||.+|||++|+|||+|+
T Consensus 94 g~~lLGRViD~lG~PlD~~~~~~~~~~~~~~~~~~np~~R~~i~e~l~TGIraID~l~pigrGQR~gIfg~sGvGKstLl 173 (432)
T PRK06793 94 GNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLL 173 (432)
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 95632877578966158999888774344328998830137778740048731000156124626666326898789999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99999986118864699995087878999999840-------34278236678888999999999999999997799289
Q gi|254780810|r 192 QNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVV 264 (423)
Q Consensus 192 ~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVl 264 (423)
.||+++..++ ++++++||||++||.||.+.. +++||++|+|+||.+|+++|++|+++||||+++|+|||
T Consensus 174 ~~i~~~~~ad----v~Vi~lIGeRgrEv~efi~~~l~~~gl~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VL 249 (432)
T PRK06793 174 GMIAKNAKAD----INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVL 249 (432)
T ss_pred HHHHHHCCCC----CEEEEEEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9998724578----657999888627999999998644675212788725889989999887551237889986699689
Q ss_pred EEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCC
Q ss_conf 99816389877620013667776777520246650468752257777778500121120126765541388988522660
Q gi|254780810|r 265 ILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNS 344 (423)
Q Consensus 265 l~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~ 344 (423)
++|||+||||+||||++.+.||+|++|++|+++...+++.++|++.+ +||||++|||+++ |||++|||+|++++++||
T Consensus 250 li~DslTr~A~A~REisl~~gepP~~Gy~p~~~s~l~~LlERag~~~-~GSITa~~tVl~~-gdD~~~pI~d~~~silDG 327 (432)
T PRK06793 250 LMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLERSGKTQ-KGSITGIYTVLVD-GDDLNGPVPDLARGILDG 327 (432)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCEEEEEEEEEC-CCCCCCCCHHHHHHHCCE
T ss_conf 99456788888874778853799989888645878999997540368-8635788899832-886678715767766253
Q ss_pred EEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 789808788479997405335422101551999999999999999612693789999999
Q gi|254780810|r 345 EIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLID 404 (423)
Q Consensus 345 ~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~ 404 (423)
||||||+||++|||||||++.|+||++..+++++|++.+..+|++|+.|.++|.|..+..
T Consensus 328 hIvLsr~La~~g~yPAIDvl~SvSRv~~~v~~~~h~~~a~~~r~~la~y~e~edli~iG~ 387 (432)
T PRK06793 328 HIVLKRELATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSIYKENELYFKLGT 387 (432)
T ss_pred EEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 799967588669999728851542262545039999999999999999999999998479
No 16
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=596.35 Aligned_cols=326 Identities=22% Similarity=0.204 Sum_probs=303.0
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHH-CCCCCCCCCCCCC
Q ss_conf 486666556046010000122125987999886246888763000222255688788512443000-2000112234324
Q gi|254780810|r 73 ANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDN-LTPLYPDKRFNME 151 (423)
Q Consensus 73 ~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~-l~p~~p~~~i~le 151 (423)
.......++..+.+++....+|+.|+.|..++++.+++++..+||||.++.|+|+|++++....+. ++...+++.+..|
T Consensus 56 aEVvgf~~~~~~l~~~~~t~Gi~~G~~V~~tg~~~~vpvg~~lLGRVid~lG~PiDg~g~~~~~~~~~pi~~~~p~p~~R 135 (441)
T PRK08927 56 CEVIGFRGDRALLMPFGPLEGVRRGCRAVIANAAAQVRPSAAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSR 135 (441)
T ss_pred EEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHC
T ss_conf 99998859879999888877889999999899998777786642878776711158999888876004024789684661
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-----
Q ss_conf 778653213688899886551023122204877878999999999986118864699995087878999999840-----
Q gi|254780810|r 152 LNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV----- 226 (423)
Q Consensus 152 ~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~----- 226 (423)
.++.+|++||+|+||+|+|||||||.+|||++|+|||+|+.||+++..++ ++++++||||+|||+||.+..
T Consensus 136 ~~i~e~L~TGIraID~l~pigrGQRigIfagsGvGKs~Ll~~i~r~~~ad----v~VialIGeRgrEv~efi~~~l~~~~ 211 (441)
T PRK08927 136 ARVGPPLDLGVRALNTFLTCCRGQRLGIFAGSGVGKSVLLSMLARNTDAD----VSVIGLIGERGREVQEFLQDDLGPEG 211 (441)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC----CEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 77776310360156533002036466631689998789999998641677----37875226518999999998720245
Q ss_pred --CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHH
Q ss_conf --342782366788889999999999999999977992899981638987762001366777677-75202466504687
Q gi|254780810|r 227 --QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRF 303 (423)
Q Consensus 227 --~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~ 303 (423)
++++|++|+|+||.+|+++|++|+++||||+++|||||++|||+||||+||||++.+.||+|+ .||+|+.++...++
T Consensus 212 l~rsvvV~atsd~p~~~R~~a~~~A~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l 291 (441)
T PRK08927 212 LARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRL 291 (441)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 22458999637898788799998755899999977996799834602888999999975589998778786178771788
Q ss_pred HHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf 52257777778500121120126765541388988522660789808788479997405335422101551999999999
Q gi|254780810|r 304 FGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKV 383 (423)
Q Consensus 304 ~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~ 383 (423)
.++|++..++||||++|||+++ |||++|||+|++++++||||||||+||++|||||||+++|.||++..+++++|++.+
T Consensus 292 ~ERag~~~~~GSIT~~~tVl~~-gdD~~dPi~d~~~~ilDGhIvLsr~La~~G~yPAIDvl~S~SR~~~~~~~~~h~~~a 370 (441)
T PRK08927 292 LERAGPGLGEGTITGLFTVLVD-GDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPAELPLV 370 (441)
T ss_pred HHHHCCCCCCCEEECEEEEEEC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHH
T ss_conf 8761357899503030357612-787678724544656364799968798669999808762564424000279999999
Q ss_pred HHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999961269378999999
Q gi|254780810|r 384 FMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 384 ~~~r~~l~~~~~~e~~~~l~ 403 (423)
..+|++|+.|+++|.+..+.
T Consensus 371 ~~~r~~la~y~e~edli~~G 390 (441)
T PRK08927 371 RRARQLMATYADMEELIRLG 390 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999888999999973
No 17
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=597.03 Aligned_cols=325 Identities=20% Similarity=0.229 Sum_probs=304.1
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
......+|....+++....+|+.|+.|..+++++.+|++..+||||.+..|+|+|++++.......+...+++.+..|.+
T Consensus 60 EVvgf~~~~~~l~p~~~~~Gi~~G~~V~~tg~~~~VpVG~~lLGRVvD~lG~PiDg~g~~~~~~~~~i~~~~~~pl~R~~ 139 (440)
T PRK08972 60 EVVGFDGDLLYLMPIEELRGVLPGARVTPLGEQSGLPVGMSLLGRVLDGNGNPLDGLGPIYTDQRAPRHSPPINPLSRRP 139 (440)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 99998299799998888888899999997899867884813118875788663589999999852131379978210377
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
+.+|++||+|+||+|+|||||||.+|||++|+|||+|+.||+++..++ +++++|||||+|||.||.+..
T Consensus 140 i~epl~TGIkaID~l~pigrGQRigIf~gsGvGKS~Ll~~i~r~~~ad----vvVi~lIGERgrEv~efie~~l~~~~~~ 215 (440)
T PRK08972 140 ITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD----VIVVGLVGERGREVKEFIEEILGEEGRA 215 (440)
T ss_pred CCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCC----EEEEEEECEEHHHHHHHHHHHHCCCCCE
T ss_conf 786101583456343671246466631578975899998887514787----8999862313699999999985047744
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf 342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~ 305 (423)
+++||++|+|+||.+|++++++|+++||||+|+|+|||++|||+||||+||||++...||+|+ .||+|++++...++.+
T Consensus 216 rsvvV~atsd~~p~~R~~a~~~A~tiAEyFrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYppsvf~~l~~LlE 295 (440)
T PRK08972 216 RSVVVAAPADTSPLMRLKGCETATRIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVE 295 (440)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 78999704888868899999999988999996799779996355677788878998748998766776427777368887
Q ss_pred CCCCC-CCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHH
Q ss_conf 25777-77785001211201267655413889885226607898087884799974053354221015519999999999
Q gi|254780810|r 306 AARNI-KEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVF 384 (423)
Q Consensus 306 ~ar~~-~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~ 384 (423)
+|++. .++||||++|||++| |||++|||++++++++||||||||+||++|||||||+++|.||++..+++++|++.+.
T Consensus 296 Rag~~~~~~GSITa~~tVlv~-gdD~~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~SvSRvm~~i~~~~h~~~a~ 374 (440)
T PRK08972 296 RAGNGGPGQGSITAFYTVLTE-GDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMVISEEHLEAMR 374 (440)
T ss_pred HHCCCCCCCEEEEEEEEEECC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHH
T ss_conf 522689997658885666315-8866787245446553507998487986699987587506655274106899999999
Q ss_pred HHHHHHHCCCCHHHHHHHH
Q ss_conf 9999961269378999999
Q gi|254780810|r 385 MLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 385 ~~r~~l~~~~~~e~~~~l~ 403 (423)
++|++|+.|++.|.+..+.
T Consensus 375 ~~r~~la~y~e~~dli~~g 393 (440)
T PRK08972 375 RVKQVYSLYQQNRDLISIG 393 (440)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999888899999975
No 18
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=0 Score=593.80 Aligned_cols=249 Identities=74% Similarity=1.152 Sum_probs=245.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCC
Q ss_conf 13688899886551023122204877878999999999986118864699995087878999999840342782366788
Q gi|254780810|r 159 DISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDES 238 (423)
Q Consensus 159 ~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~ 238 (423)
++|+|+||+|+|||||||+|||||+|+|||+|+++|++++.+||++++|+++|||||+|||+||.+.++++||+||+|+|
T Consensus 1 d~~~r~ID~l~pigkGQR~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~lIGER~rEv~e~~~~~~~~vv~st~d~~ 80 (249)
T cd01128 1 ELSTRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEP 80 (249)
T ss_pred CCCCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHCEEEEEECCCCC
T ss_conf 97410154324616786778878999889999999999999858984999999716579999999971616999569999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEE
Q ss_conf 88999999999999999997799289998163898776200136677767775202466504687522577777785001
Q gi|254780810|r 239 AARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTI 318 (423)
Q Consensus 239 ~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~ 318 (423)
|..|+++|++|+++||||+|+|+|||++||||||||+||||+++++||++++|++|++++.|++||+++++.+++||+|+
T Consensus 81 p~~r~~~a~~a~~iAEyfr~~G~dVLl~~DslTR~A~A~rEis~~~ge~~~~g~~~~~~~~~~~~~~~a~~~e~~GSiT~ 160 (249)
T cd01128 81 PERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 89999999999999999998799779995148899999866302469878899791354554899985267889953799
Q ss_pred EEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 21120126765541388988522660789808788479997405335422101551999999999999999612693789
Q gi|254780810|r 319 IGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDA 398 (423)
Q Consensus 319 ~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~ 398 (423)
+||||+|+||++|+||+++++|++||||||||+||++||||||||++|+||+++.+++++|++.++.+|++|+.|+++|+
T Consensus 161 ~~tvlve~~d~~d~~I~~~~~~i~Dg~IvLsr~la~~g~yPAIDv~~S~SR~~~~i~~~~~~~~a~~~R~~l~~y~~~e~ 240 (249)
T cd01128 161 IATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLLDPEELQRMWLLRRVLSDMDPIEA 240 (249)
T ss_pred EEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 88887637766672689998651774999639999759998646334621034010999999999999999966877899
Q ss_pred HHHHHHHHH
Q ss_conf 999999840
Q gi|254780810|r 399 IEFLIDKLK 407 (423)
Q Consensus 399 ~~~l~~~~~ 407 (423)
|++|++.|+
T Consensus 241 m~~l~~~~~ 249 (249)
T cd01128 241 MEFLLKKLR 249 (249)
T ss_pred HHHHHHHHC
T ss_conf 999999729
No 19
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=596.21 Aligned_cols=397 Identities=17% Similarity=0.115 Sum_probs=343.0
Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCC----CCCCCCCCE
Q ss_conf 9970998999999998389885766678999999987520587489999985404770267504548----666655604
Q gi|254780810|r 8 ELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDAN----YLAGPDDIY 83 (423)
Q Consensus 8 eL~~~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~----yl~~~~Diy 83 (423)
++-.+.+..|.+ .|++|..-.. +.+++.+....+|++.++|+-.++ +|.+..+.++ .++.++|.+
T Consensus 3 ~~~~~~~~~~~~-----~i~~~~~~~~---~~e~G~v~~vgdgia~v~Gl~~~~---~~el~~f~~~~~g~~~nle~~~v 71 (497)
T TIGR03324 3 EVLDKAFQQLDQ-----ARESFQPQLT---VQEVGTVESVSTGIARVHGLPGVG---FEELLRFPGGLLGIAFNVDEDEV 71 (497)
T ss_pred HHHHHHHHHHHH-----HHHHCCCCCE---EEEEEEEEEECCCEEEEECCCCCC---CCCEEEECCCCEEEEEECCCCCE
T ss_conf 689999999999-----9972488752---466679999748569997850104---48638808998899996378837
Q ss_pred EECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 60100001221259879998862468887630002222556887885124430002000112234324778653213688
Q gi|254780810|r 84 VSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSR 163 (423)
Q Consensus 84 Vs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~ 163 (423)
..+.++...+|++||.|..|+++..+|++..+||||+++.|+|+|+++++...+.++...++|.+..|.++++|++||+|
T Consensus 72 g~v~lg~~~~i~~G~~V~~TG~~l~VPVG~~lLGRVvd~LG~PiDGkgpi~~~~~~pie~~aP~i~~R~~V~epL~TGIk 151 (497)
T TIGR03324 72 GVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLK 151 (497)
T ss_pred EEEEECCCCCCCCCCEEEECCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99995698776899999858982287448887176458885567899998876410245789896347888871002414
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCC
Q ss_conf 899886551023122204877878999999999986118864699995087878999999840-------3427823667
Q gi|254780810|r 164 VIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFD 236 (423)
Q Consensus 164 ~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d 236 (423)
+||+|+|||||||.+|||++|+|||+++.+.+ +++...+++|||++||||++||.+|.+.. ++.||++|+|
T Consensus 152 aID~liPIGrGQRelIigdrgtGKTtla~dtI--inqk~~~vicVyvaIGqr~seV~~~v~~l~~~gal~~TvVV~Ata~ 229 (497)
T TIGR03324 152 VIDALIPIGRGQRELILGDRQTGKTAIAIDTI--LNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGN 229 (497)
T ss_pred HHHCCCCCCCCCEEEEECCCCCCHHHHHHHHH--HHCCCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 55424655677467764588888008899999--7045667189999732507879999999874875234179995688
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCC---C
Q ss_conf 88889999999999999999977992899981638987762001366777677-7520246650468752257777---7
Q gi|254780810|r 237 ESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIK---E 312 (423)
Q Consensus 237 ~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~---~ 312 (423)
+||.+|+.+|++++++||||+++|+|||++||||||||+|||++++..||+|+ .+||+.+|+..+++.++|.+.. +
T Consensus 230 dpa~lr~~Apyaa~aiAEyFrd~G~dVLlv~DdLTr~A~A~REisLll~rpPgreaYPgdvFylhsrLLERA~~l~~~~g 309 (497)
T TIGR03324 230 DPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELG 309 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99899988789999999999968974899997806999999999986489998778893598770788873247789999
Q ss_pred CCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 78500121120126765541388988522660789808788479997405335422101551999999999999999612
Q gi|254780810|r 313 GGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSS 392 (423)
Q Consensus 313 ~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~ 392 (423)
|||||++++++++ ++|+++||+++++|++||||+|||+||++|+|||||++.|+||+....+.+.+.+.+..+|..|++
T Consensus 310 gGSiTalpivet~-~~D~sayIptnvisItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~~aq~~~~k~vag~lrl~laq 388 (497)
T TIGR03324 310 GGSLTALPIIETE-AQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAVAGDLKLAYAQ 388 (497)
T ss_pred CCCEEEEEEEECC-CCCCCCCHHHHHHHHCCCEEEECCCHHHCCCCCCCCCCCCEECCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9772324799802-886566445422201086799724076579976435687731367243058999874456999998
Q ss_pred CCCHHHHHHHHH--------HHHCCCCHHHHHHH
Q ss_conf 693789999999--------84028998999986
Q gi|254780810|r 393 MNSSDAIEFLID--------KLKQTKDNKDFFYS 418 (423)
Q Consensus 393 ~~~~e~~~~l~~--------~~~~~~~n~e~l~~ 418 (423)
|.|+|++..+-. .+.+.+...|+|+|
T Consensus 389 ~~El~~f~qfgs~ld~~t~~~l~rG~r~~e~lkQ 422 (497)
T TIGR03324 389 FEELETFARFGARLDENTRKTIEHGRRIRACLKQ 422 (497)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999876244489999999887999998667
No 20
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=596.66 Aligned_cols=356 Identities=20% Similarity=0.157 Sum_probs=320.6
Q ss_pred HHHHHHHCCCEEEEEEE------E-EEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 99875205874899999------8-5404770267504548666655604601000012212598799988624688876
Q gi|254780810|r 41 ILKVLSGRDVEIIGEGV------I-EVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERY 113 (423)
Q Consensus 41 Il~~~~~~~g~~~~eGv------L-EIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~ 113 (423)
++++....++.+.++|+ + ++...+-|- ......+...+|.+..+++....+++.|+.|..++++.+.|++.
T Consensus 20 yG~V~~V~G~li~v~G~~~~iGe~~~I~~~~~g~--~~~geVvg~~~~~v~l~~~~~~~Gi~~G~~V~~tg~~~~vpvg~ 97 (435)
T PRK08472 20 FGSITKISANIIEARGLKPSVGDIVKIVEENDGK--ECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISDEGLNIPVGR 97 (435)
T ss_pred CCEEEEEECEEEEEEECCCCCCCEEEEEECCCCC--EEEEEEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCEEECCC
T ss_conf 8689999573999994588767879999769996--77899998859989999836887899999999899973787583
Q ss_pred CCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
Q ss_conf 30002222556887885124430002000112234324778653213688899886551023122204877878999999
Q gi|254780810|r 114 FALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQN 193 (423)
Q Consensus 114 ~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ 193 (423)
.+||||.+..|+|+|+.++....+..+...+++.+..|.++.+|++||+|+||+|+|||||||.+|||++|+|||+|+.|
T Consensus 98 ~lLGRVvD~lG~PlDg~g~i~~~~~~pi~~~~~~p~~R~~i~epl~TGIraID~l~pigrGQR~gIf~g~GvGKt~Ll~~ 177 (435)
T PRK08472 98 NLLGRVVDPLGRPIDGKGAIDYTEYAPIMRAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGM 177 (435)
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCHHHHH
T ss_conf 40278877788645899998876230114789880451688874115855774326624776651235899983357888
Q ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999986118864699995087878999999840------34278236678888999999999999999997799289998
Q gi|254780810|r 194 IAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILL 267 (423)
Q Consensus 194 ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~ 267 (423)
|+++..++ ++|+++||||++||.||.+.. ++++|++|+|+||.+|+++|++|+++||||+++|+|||++|
T Consensus 178 i~~~~~~d----v~V~~lIGeR~rEv~efie~~~~~~l~~tvvvvatsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~ 253 (435)
T PRK08472 178 IVKGCLAP----IKVVALIGERGREIPEFIEKNLGGDLSNTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIM 253 (435)
T ss_pred HHHHHCCC----EEEEEEECEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 87761599----88997613122789999998741132225999846889989998888899999999986798489984
Q ss_pred ECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 1638987762001366777677-752024665046875225777777850012112012676554138898852266078
Q gi|254780810|r 268 DSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEI 346 (423)
Q Consensus 268 DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i 346 (423)
||+||||+||||+++..||+|+ .||+|+.++..++|+++|++.+++||||+++|++++ |||++|||+|++++++||||
T Consensus 254 Dsltr~A~A~REisl~~ge~P~~~gYp~~vf~~l~~l~ERag~~~~~GSIT~i~~v~~~-gdD~~~pi~d~~~si~DG~i 332 (435)
T PRK08472 254 DSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSITAFFTVLVE-GDDMSDPIADQSRSILDGHI 332 (435)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC-CCCCCCCCHHHHHHHCCEEE
T ss_conf 36278899999999865899975563835776657888864258898514888778504-88767774555545406079
Q ss_pred EEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 980878847999740533542210155199999999999999961269378999999
Q gi|254780810|r 347 VLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 347 ~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~ 403 (423)
+|||+||++||||||||++|.||++..+++++|++.+..+|+.++.|++.|.|..+.
T Consensus 333 vLsr~La~~g~yPAIdvl~S~SR~~~~~~~~~h~~~a~~~r~~~a~y~e~e~li~ig 389 (435)
T PRK08472 333 VLSRELTDFGIYPPINILNSASRVMKDIISPEHNLWARKFKRLYSLLKENEVLIRIG 389 (435)
T ss_pred EECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 997879866999984863145441400136999999999999999989899999964
No 21
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=0 Score=599.47 Aligned_cols=325 Identities=19% Similarity=0.194 Sum_probs=296.5
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHH--HCCCCH-HHCCCCCCCCCCCC
Q ss_conf 866665560460100001221259879998862468887630002222556887885--124430-00200011223432
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERV--RNKIHF-DNLTPLYPDKRFNM 150 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~--~~~~~f-~~l~p~~p~~~i~l 150 (423)
......+|....+++....+|+.|+.|..+++++..+++..+||||.+..|+|+|+. ++.... +.++...++|.+..
T Consensus 61 EVVgf~~~~~~l~p~~~~~Gi~~G~~V~~~g~~~~vpvg~~lLGRViD~~G~PiDg~~~gp~~~~~~~~pi~~~~p~p~~ 140 (442)
T PRK06315 61 EVVGFTQNFVFLSPLGELTGVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLH 140 (442)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHH
T ss_conf 99998499799998778767899999996899877872715137888888776678777887677631132478969343
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH----
Q ss_conf 4778653213688899886551023122204877878999999999986118864699995087878999999840----
Q gi|254780810|r 151 ELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---- 226 (423)
Q Consensus 151 e~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---- 226 (423)
|.++.+|++||+|+||+|+|||+|||.+|||++|+|||+|+.||+++... .+ ++++++||||+|||+||.+..
T Consensus 141 R~~i~epl~TGIraID~llpig~GQR~gIfagsGvGKs~Ll~~i~~~~~~--ad-v~V~~lIGeRgrEv~efie~~~~~~ 217 (442)
T PRK06315 141 RAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEE--AD-VNVIALIGERGREVREFIEGDLGEE 217 (442)
T ss_pred HCCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCC--CC-CEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 07878753368530011277023777640389999888999999974403--89-3499995511379999999752014
Q ss_pred ---CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHH
Q ss_conf ---342782366788889999999999999999977992899981638987762001366777677-7520246650468
Q gi|254780810|r 227 ---QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKR 302 (423)
Q Consensus 227 ---~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~ 302 (423)
+++||++|+|+||.+|+++|++|+++||||+++|+|||++|||+||||+|+||++.+.||+|+ .||+|++++...+
T Consensus 218 ~l~rsvvV~atsd~p~~~R~~a~~~A~aiAEyFrd~G~~VLl~~DslTR~A~A~REi~l~~gepP~~~GYppsvf~~l~~ 297 (442)
T PRK06315 218 GMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPK 297 (442)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 52133999617999878875558877789999986899489994370288889999997558999877868339988788
Q ss_pred HHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHH
Q ss_conf 75225777777850012112012676554138898852266078980878847999740533542210155199999999
Q gi|254780810|r 303 FFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQK 382 (423)
Q Consensus 303 ~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~ 382 (423)
|.++|++.+ +||||++|||++| |||++|||+|++++++||||||||+||++||||||||++|.||++..+++++|++.
T Consensus 298 l~ERag~~~-~GSITa~~tVl~~-gdD~~dPi~d~~~~ilDGhivLsr~la~~g~yPAIDvl~S~SR~~~~v~~~~h~~~ 375 (442)
T PRK06315 298 LLERAGASD-KGTITAFYTVLVA-GDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRI 375 (442)
T ss_pred HHHHCCCCC-CCCEEEEEEEECC-CCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHH
T ss_conf 887224889-9745653346515-88767873677787606169985879866999971875045336611057999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999999961269378999999
Q gi|254780810|r 383 VFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 383 ~~~~r~~l~~~~~~e~~~~l~ 403 (423)
+..+|++|+.|+++|.+..+.
T Consensus 376 a~~~r~~la~y~e~edli~iG 396 (442)
T PRK06315 376 IGKAREVLAKYKANEMLIRIG 396 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999889999999962
No 22
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=0 Score=592.86 Aligned_cols=397 Identities=16% Similarity=0.120 Sum_probs=346.1
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCC----CCCCCCCCEEECC
Q ss_conf 998999999998389885766678999999987520587489999985404770267504548----6666556046010
Q gi|254780810|r 12 KSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDAN----YLAGPDDIYVSPS 87 (423)
Q Consensus 12 ~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~----yl~~~~DiyVs~s 87 (423)
.+..|+.++.++ .|+++..-.+ +.+++++....+|++.++|+-++. +|.+..+.++ .++.++|.+....
T Consensus 4 ~~~~ei~~~i~~-~i~~~~~~~~---~~e~G~V~~v~DGia~v~GL~~~~---~~Elv~f~~g~~G~vlnLe~~~vg~vl 76 (501)
T CHL00059 4 IRPDEISNIIRE-RIEQYNREVK---IVNTGTVLQVGDGIARIYGLDEVM---AGELVEFEEGTIGIALNLESNNVGVVL 76 (501)
T ss_pred CCHHHHHHHHHH-HHHHCCCCCC---CEEEEEEEEECCCEEEEECCCCCC---CCCEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 899999999999-9983587775---203479999706279982673125---586499689987999843788069999
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 00012212598799988624688876300022225568878851244300020001122343247786532136888998
Q gi|254780810|r 88 QIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDL 167 (423)
Q Consensus 88 lir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~ 167 (423)
++...++++||.|.+|+++..+|++..+||||++++|+|+|+++++...+..+...++|.+..|.++.+|++||+|+||+
T Consensus 77 lg~~~~i~eG~~V~~TG~~l~VPVG~~lLGRVvd~LG~PiDgkg~i~~~~~~pie~~aP~~~~R~~V~epL~TGIkaID~ 156 (501)
T CHL00059 77 MGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDS 156 (501)
T ss_pred ECCCCCCCCCCEEEECCCEEEEECCHHHCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 76987768999888579724774575231474068775447999889875010437997850446667423234211100
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHH
Q ss_conf 86551023122204877878999999999986118864699995087878999999840-------34278236678888
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAA 240 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~ 240 (423)
|+|||||||.+|||++|+|||+|+.+.+.+ +...+++|||++||||++||.+|.+.+ ++.||++|+|+||.
T Consensus 157 l~PiGrGQR~lI~Gd~gvGKTtl~~d~Iin--qk~~~vicVyvaIGeR~reV~~~i~~l~~~gam~~TvvV~Atadepa~ 234 (501)
T CHL00059 157 MIPIGRGQRELIIGDRQTGKTAVATDTILN--QKGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPAT 234 (501)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH
T ss_conf 367667756677557884477999999985--246884899998556277899999999756971036999617999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCC-CC--CCCCC
Q ss_conf 9999999999999999977992899981638987762001366777677-75202466504687522577-77--77850
Q gi|254780810|r 241 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARN-IK--EGGSL 316 (423)
Q Consensus 241 ~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~-~~--~~Gs~ 316 (423)
+|+++|+.++++|||||++|+|||++||||||||+||||+++..||+|+ .|||+.+||.-+++.++|.. .. ++||+
T Consensus 235 lr~~Apyaa~aIAEyFrdqGkdVLlv~DdLTr~A~A~REisLllgrPPgregYPgdVFylhsrLlERa~kl~~~~ggGSi 314 (501)
T CHL00059 235 LQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSM 314 (501)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 99999999999999999779828999868269889999989864899976678962887857898776505789998847
Q ss_pred EEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 01211201267655413889885226607898087884799974053354221015519999999999999996126937
Q gi|254780810|r 317 TIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSS 396 (423)
Q Consensus 317 T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~ 396 (423)
|++++++++ ++|+++||++++++++||||+|||+||++|+|||||+..|+||.....+.+...+.+..+|..|++|+|+
T Consensus 315 Talpivet~-~~D~s~yIptnviSItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~~aq~k~~k~va~~lrl~laq~~el 393 (501)
T CHL00059 315 TALPIVETQ-SGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAEL 393 (501)
T ss_pred EEEEEEEEC-CCCCCCCCCHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888899823-8864555541044405742998565552777743454555112561767899999877879999989999
Q ss_pred HHHHHHHHHH--------HCCCCHHHHHHH
Q ss_conf 8999999984--------028998999986
Q gi|254780810|r 397 DAIEFLIDKL--------KQTKDNKDFFYS 418 (423)
Q Consensus 397 e~~~~l~~~~--------~~~~~n~e~l~~ 418 (423)
+++..+...| .+.+.-.|+|+|
T Consensus 394 ~~f~~f~~~ld~~t~~~l~rg~r~~e~lkQ 423 (501)
T CHL00059 394 EAFAQFASDLDKATQNQLARGQRLRELLKQ 423 (501)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999986233599999999989999998678
No 23
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=596.87 Aligned_cols=325 Identities=22% Similarity=0.253 Sum_probs=303.7
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
......+|.+..+++....+|+.|+.|..++++..++++..+||||.+..|+|+|+.+.......++...++|.+..|.+
T Consensus 56 EVVgf~~~~v~l~p~~~~~GI~~G~~V~~~g~~~~vpvg~~lLGRV~d~lG~PiDg~~~~~~~~~~~i~~~~pnp~~R~~ 135 (435)
T PRK07721 56 EVVGFKDENILLMPYLEAANIAPGSLVEATGEPLRVKVGSGLIGQVVDAFGEPLDGSALPKGLAPVSTDQSPPNPMKRPP 135 (435)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99987698899998768889999999995899766772753224510456543589888887653525589978501479
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
+.+|++||+|+||+|+|||||||.+|||++|+|||+|+.||+++..++ ++|+++||||+|||.||.+..
T Consensus 136 i~e~l~TGIraID~l~tigkGQRigIf~gsGvGKs~Ll~~iar~~~ad----v~V~~liGeR~rEv~efie~~l~~~~l~ 211 (435)
T PRK07721 136 IREKMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARQTSAD----LNVIALIGERGREVREFIERDLGEEGLK 211 (435)
T ss_pred CCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC----EEEEEEECCCHHHHHHHHHHHHCCCCCC
T ss_conf 886303785652264760357541002689987899999998874488----2589993320289999999752215553
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf 342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~ 305 (423)
+++||++|+|+||.+|++++++|+++||||+++|+|||++|||+||||+||||++...||+|+ .||+|++++...++++
T Consensus 212 rsvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~E 291 (435)
T PRK07721 212 RSIVVVATSDQPALMRIKGAYTATAIAEYFRDKGQNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLE 291 (435)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 23999943889999999999998889999996799789951638899999999998548999866778459988788888
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 25777777850012112012676554138898852266078980878847999740533542210155199999999999
Q gi|254780810|r 306 AARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFM 385 (423)
Q Consensus 306 ~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~ 385 (423)
+|++.+ +||||+||||++| |||++|||+|++++++||||||||+||++||||||||++|.||++..+++++|++.+..
T Consensus 292 Rag~~~-~GSIT~i~~V~~~-gdD~~dPi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~i~~~~h~~~a~~ 369 (435)
T PRK07721 292 RTGTNE-SGTITAFYTVLVD-GDDMNEPIADTVRGILDGHFVLDRALANKGQFPAVNVLKSISRVMSNIATKEHKEAANR 369 (435)
T ss_pred HHCCCC-CCCEEEEEEEECC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
T ss_conf 513799-9745777545047-98666771687877716179986889866999980886166543222302999999999
Q ss_pred HHHHHHCCCCHHHHHHHHH
Q ss_conf 9999612693789999999
Q gi|254780810|r 386 LRRIVSSMNSSDAIEFLID 404 (423)
Q Consensus 386 ~r~~l~~~~~~e~~~~l~~ 404 (423)
+|+.|+.|.+.|.+..+..
T Consensus 370 ~r~~la~y~e~~~li~~g~ 388 (435)
T PRK07721 370 FRELLSTYQNSEDLINIGA 388 (435)
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 9999998899999999748
No 24
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=587.25 Aligned_cols=326 Identities=23% Similarity=0.225 Sum_probs=304.5
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
......+|.++.+++....+|+.|+.|..++++.+.+++..+||||.+..|+|+|+.++....+.++...+++.+..|.+
T Consensus 37 EVVgf~~~~v~l~~~~~~~Gi~~G~~V~~tg~~~~v~vg~~lLGRVid~lG~PlDg~~~~~~~~~~pi~~~~p~p~~R~~ 116 (411)
T TIGR03496 37 EVVGFSGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAP 116 (411)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCHHHCCCEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHCCC
T ss_conf 99997299799998668878888999997899666763876537885788876577788887845650079968143178
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
+.+|++||+|+||+|+|||+|||.+|||++|+|||+||.||+++.+++ +++++|||||+|||.||.+..
T Consensus 117 i~epl~TGIraID~l~pig~GQR~gIf~g~GvGKs~Ll~~ia~~~~ad----v~VialIGeR~rev~efie~~~~~~~~~ 192 (411)
T TIGR03496 117 IDEPLDVGVRAINGLLTVGRGQRIGIFAGSGVGKSVLLGMMARYTEAD----VVVVGLIGERGREVKEFIEEILGEEGLA 192 (411)
T ss_pred CCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCC----EEEEECCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 776211583466344661468631322799986779999997534898----8999532530589999999862225652
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf 342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~ 305 (423)
++++|++|+|+||.+|+++|++|+++||||+++|+|||++|||+||||+||||++...||+|+ .||+|+.++...++++
T Consensus 193 ~tvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~vf~~l~~l~E 272 (411)
T TIGR03496 193 RSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPRLVE 272 (411)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 16999943889989999999999999999996699469997468899999989998737999866788538888778887
Q ss_pred CCCCCC-CCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHH
Q ss_conf 257777-7785001211201267655413889885226607898087884799974053354221015519999999999
Q gi|254780810|r 306 AARNIK-EGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVF 384 (423)
Q Consensus 306 ~ar~~~-~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~ 384 (423)
+|++.. ++||||+||||++| |+|++|||++++++++||||||||+||++|||||||+++|.||++..+++++|++.+.
T Consensus 273 Rag~~~~~~GSIT~~~~V~~~-~dD~~dpi~d~~~~ilDG~ivLsr~la~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a~ 351 (411)
T TIGR03496 273 RAGNGEEGKGSITAFYTVLVE-GDDQQDPIADAARAILDGHIVLSRELAEQGHYPAIDILASISRVMPDVVSPEHLQLAR 351 (411)
T ss_pred HCCCCCCCCEEEEEEEEEECC-CCCCCCCHHHHHHHHEEEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHH
T ss_conf 436899989868773589757-9875664577656514048999398996799997186405644233216899999999
Q ss_pred HHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999612693789999999
Q gi|254780810|r 385 MLRRIVSSMNSSDAIEFLID 404 (423)
Q Consensus 385 ~~r~~l~~~~~~e~~~~l~~ 404 (423)
.+|++|+.|+++|.+..+..
T Consensus 352 ~~r~~la~y~e~~~li~~g~ 371 (411)
T TIGR03496 352 RFKQLLSRYQENRDLISIGA 371 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999899999999747
No 25
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=596.00 Aligned_cols=372 Identities=19% Similarity=0.192 Sum_probs=313.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCE-EEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEE---
Q ss_conf 8857666789999999875205874899999854047702-675045486666556046010000122125987999---
Q gi|254780810|r 27 ENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFG-FLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEG--- 102 (423)
Q Consensus 27 e~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyG-FLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g--- 102 (423)
+++..++..+-|.++.....+..|+-..-|-+|.+....| -+.........+.++....+++....++..|+.|..
T Consensus 20 ~~~~~~~~~GrV~~v~G~~iea~G~~a~iG~~C~I~~~~g~~~~~v~AEVVGF~~~~~~Lmp~~~~~Gi~~G~~V~~~~~ 99 (455)
T PRK07960 20 AQLPAVRRYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNI 99 (455)
T ss_pred HCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC
T ss_conf 36997614668999973599996778897998999707998777167999987699589964797665799999972467
Q ss_pred ----EEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf ----8862468887630002222556887885124430002000112234324778653213688899886551023122
Q gi|254780810|r 103 ----SIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSL 178 (423)
Q Consensus 103 ----~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~ 178 (423)
..+...+|++..+||||.+..|+|+|++++....+..+...+++.+..|.++.+|++||+|+||+|+|||||||.+
T Consensus 100 ~~~~~~~~~~vpVg~~lLGRVvd~lG~PlDg~~~~~~~~~~pi~~~~pnp~~R~~i~epL~TGIraID~llpigrGQRig 179 (455)
T PRK07960 100 SAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTTETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMG 179 (455)
T ss_pred CCCCCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEEE
T ss_conf 65557888872038463063518999826899999987615355899782211787872326844440336714787763
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 204877878999999999986118864699995087878999999840-------3427823667888899999999999
Q gi|254780810|r 179 IVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIA 251 (423)
Q Consensus 179 i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~ 251 (423)
|||++|+|||+|+.|||++..++ +++++|||||+|||.||.+.. +++||++|+|+||.+|+++|++|++
T Consensus 180 IfagsGvGKs~Ll~~iar~~~ad----v~Vi~lIGERgrEv~efi~~~l~~~~~~rsvvv~atsd~~p~~r~~aa~~a~a 255 (455)
T PRK07960 180 LFAGSGVGKSVLLGMMARYTRAD----VIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATR 255 (455)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCC----EEEEEEECEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 24899884999999998860898----58997204062899999999751477421279984266684888878999999
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCC-CCCCCCEEEEEEEECCCCC
Q ss_conf 99999977992899981638987762001366777677-752024665046875225777-7778500121120126765
Q gi|254780810|r 252 KAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNI-KEGGSLTIIGTALVDTGSR 329 (423)
Q Consensus 252 ~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~-~~~Gs~T~~~t~lvetg~~ 329 (423)
+||||+|+|+|||++|||+||||+||||++.+.||+|+ .||+|++++..+++.+++++. .++||||++|||++| |||
T Consensus 256 iAEyFrd~Gk~VLl~~DslTr~A~A~REi~l~~gepP~~~GYppsvf~~l~~L~ERaG~~~~~~GSITa~~tVl~~-gdD 334 (455)
T PRK07960 256 IAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTE-GDD 334 (455)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECC-CCC
T ss_conf 9999985587379997364788888888887637998655778306777378998504789998113788899636-888
Q ss_pred CCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 54138898852266078980878847999740533542210155199999999999999961269378999999
Q gi|254780810|r 330 MDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 330 ~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~ 403 (423)
++|||+|++++++||||||||+||++||||||||+.|.||++..+++++|++.+..+|++|+.|++.|.|..+.
T Consensus 335 ~~dPi~d~~~silDGhivLsr~la~~g~yPAIDvl~S~SR~m~~i~~~~h~~~a~~~r~~la~y~~~~dli~iG 408 (455)
T PRK07960 335 QQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRTFKQLLSSFQRNRDLVSVG 408 (455)
T ss_pred CCCCCHHHHHHHEEEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67871676454212599982899967999970865047550400079999999999999999999999999861
No 26
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=584.26 Aligned_cols=325 Identities=23% Similarity=0.219 Sum_probs=300.8
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHH-CCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000-20001122343247
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDN-LTPLYPDKRFNMEL 152 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~-l~p~~p~~~i~le~ 152 (423)
......+|.+..+.+....+|+.|+.|..++++.+.+++..+||||.+..|+|+|++++....+. .+...+++.+..|.
T Consensus 39 EVvg~~~~~v~l~~~~~t~Gi~~G~~V~~tg~~~~v~vg~~lLGRVid~~G~PlDg~g~~~~~~~~~~i~~~~p~p~~R~ 118 (418)
T TIGR03498 39 EVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRK 118 (418)
T ss_pred EEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCHHHCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHCC
T ss_conf 99998199899999079889899999996899748881742205175446763578999877756876516899822106
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------
Q ss_conf 78653213688899886551023122204877878999999999986118864699995087878999999840------
Q gi|254780810|r 153 NNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------ 226 (423)
Q Consensus 153 ~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------ 226 (423)
++.+|++||+|+||+|+|||+|||.+|||++|+|||+|+.||+++..++ ++|+++||||+|||.||.+..
T Consensus 119 ~i~e~l~TGIraID~l~pig~GQRigIfgg~GvGKt~Ll~~i~~~~~ad----v~V~aliGeRgrEv~efi~~~~~~~~l 194 (418)
T TIGR03498 119 RVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDAD----VVVIALVGERGREVREFLEDDLGEEGL 194 (418)
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC----EEEEEEEEEEHHHHHHHHHHHHHCCCC
T ss_conf 8887431576021201550257664113789998889999998750798----689988302689999999986531564
Q ss_pred -CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHH
Q ss_conf -342782366788889999999999999999977992899981638987762001366777677-752024665046875
Q gi|254780810|r 227 -QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFF 304 (423)
Q Consensus 227 -~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~ 304 (423)
++++|++|+|+||.+|++++++|+++||||+++|+|||++|||+||||+||||+++..||+|+ .||+|+.++...+++
T Consensus 195 ~~tvvv~atsd~p~~~R~~a~~~a~aiAEyFrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ 274 (418)
T TIGR03498 195 KRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLL 274 (418)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 42699994488987888888878778999998679838999557258899999999865899986778841777726878
Q ss_pred HCCC-CCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf 2257-777778500121120126765541388988522660789808788479997405335422101551999999999
Q gi|254780810|r 305 GAAR-NIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKV 383 (423)
Q Consensus 305 ~~ar-~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~ 383 (423)
++|+ ...++||||++||++++ |||++|||++++++++||||||||+||++||||||||++|.||++..+++++|++.+
T Consensus 275 ERag~~~~~~GSIT~~~~v~~~-~dD~~dpi~d~~~~i~Dg~ivLsr~la~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a 353 (418)
T TIGR03498 275 ERAGPGAEGKGSITGIFTVLVD-GDDHNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWSPEERKLV 353 (418)
T ss_pred HHHCCCCCCCEEEEEEEEEECC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHH
T ss_conf 6513689998569999999633-888677617777676263899848898679999708852664448543569999999
Q ss_pred HHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999961269378999999
Q gi|254780810|r 384 FMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 384 ~~~r~~l~~~~~~e~~~~l~ 403 (423)
..+|+.|+.|+++|.+..+.
T Consensus 354 ~~~r~~la~y~e~~dli~~g 373 (418)
T TIGR03498 354 RRLRALLARYEETEDLIRLG 373 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999889999999974
No 27
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=0 Score=584.36 Aligned_cols=397 Identities=18% Similarity=0.147 Sum_probs=344.8
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCC----CCCCCCCCEEECC
Q ss_conf 998999999998389885766678999999987520587489999985404770267504548----6666556046010
Q gi|254780810|r 12 KSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDAN----YLAGPDDIYVSPS 87 (423)
Q Consensus 12 ~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~----yl~~~~DiyVs~s 87 (423)
.+..|+..+.++ .|+++..-.+ +.+++++....+|++.++|+-.+. +|.+..+.++ .++.++|.+....
T Consensus 3 ~~~~ei~~~i~~-~i~~~~~~~~---~~~~G~V~~v~dgia~v~GL~~~~---~~elv~f~~g~~g~~~nle~d~vg~v~ 75 (502)
T PRK09281 3 INPDEISSIIKQ-QIENFDAEAE---VREVGTVLSVGDGIARVYGLDNVM---AGELLEFPGGVYGIALNLEEDSVGAVI 75 (502)
T ss_pred CCHHHHHHHHHH-HHHHCCCCCC---CEEEEEEEEECCCEEEEECCCCCC---CCCEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 888999999999-9982488774---124469999817389995775356---488699689987999824788279999
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 00012212598799988624688876300022225568878851244300020001122343247786532136888998
Q gi|254780810|r 88 QIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDL 167 (423)
Q Consensus 88 lir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~ 167 (423)
++...+|++||.|+.|+++.++|++..+||||+++.|+|+|+++++...+.++...++|.+..|.++++|++||+|+||+
T Consensus 76 lg~~~~i~~G~~V~~TG~~~~VPVG~~lLGRVvd~lG~PiDGkgpi~~~~~~pie~~aP~i~~R~~V~epL~TGIkaID~ 155 (502)
T PRK09281 76 LGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPINATETRPVERKAPGVIDRKSVHEPLQTGIKAIDA 155 (502)
T ss_pred ECCCCCCCCCCEEEECCCCEEEECCHHHHCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 46855568999898579825775675230332067745268999888860313558896851357767523311355541
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHH
Q ss_conf 86551023122204877878999999999986118864699995087878999999840-------34278236678888
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAA 240 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~ 240 (423)
|+|||||||.+|||++|+|||+++.+.+ +++...+++|||++||||++||.+|.+.+ ++.||++|+|+||.
T Consensus 156 l~PiGrGQR~lIiGd~gtGKT~iaidtI--inqk~~~vicVyvaIGer~seV~~~v~~L~~~gal~~TvvV~ata~dpa~ 233 (502)
T PRK09281 156 MIPIGRGQRELIIGDRQTGKTAIAIDTI--INQKGKDVICIYVAIGQKASTVANVVRKLEEHGAMEYTIVVAATASDPAP 233 (502)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHH--HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH
T ss_conf 2565687566752478733889999999--85325883699998512217899999987544864113799717999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCC-CC--CCCCC
Q ss_conf 9999999999999999977992899981638987762001366777677-75202466504687522577-77--77850
Q gi|254780810|r 241 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARN-IK--EGGSL 316 (423)
Q Consensus 241 ~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~-~~--~~Gs~ 316 (423)
+|+.+|+.++++|||||++|+|||++||||||||+|||++++..||+|+ .|||+.+||.-+++.++|.+ .+ ++|||
T Consensus 234 lr~~Apyaa~aIAEyFrd~G~dVLlv~DdLtr~A~A~REisLll~rPPgreaYPgdVFylhsrLlERa~~l~~~~ggGSi 313 (502)
T PRK09281 234 LQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSL 313 (502)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99999999999999999679948999855689999998889862799876678940777867998876514788998406
Q ss_pred EEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 01211201267655413889885226607898087884799974053354221015519999999999999996126937
Q gi|254780810|r 317 TIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSS 396 (423)
Q Consensus 317 T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~ 396 (423)
|++++++++ ++|+++||++++++++||||+|||+||++|+|||||++.|+||+....+.+.+.+.+..+|..|++|+|+
T Consensus 314 Talpivet~-a~DvsayIptnvisItDGqI~L~~~L~~~G~~PAIdvg~SVSRVG~~aQ~k~~k~vag~lrl~laqy~el 392 (502)
T PRK09281 314 TALPIIETQ-AGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGISVSRVGGAAQIKAMKKVAGTLRLDLAQYREL 392 (502)
T ss_pred EEEEEEEEC-CCCCCCCCCCCCEEEECCEEEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 767666604-8865565440202341446998642766898750144553334675024499999999999999999999
Q ss_pred HHHHHHHH--------HHHCCCCHHHHHHH
Q ss_conf 89999999--------84028998999986
Q gi|254780810|r 397 DAIEFLID--------KLKQTKDNKDFFYS 418 (423)
Q Consensus 397 e~~~~l~~--------~~~~~~~n~e~l~~ 418 (423)
+++..+-. .+.+.+...|+|+|
T Consensus 393 ~~fa~fgsdld~~t~~~l~rg~r~~e~LkQ 422 (502)
T PRK09281 393 EAFAQFGSDLDEATRAQLERGQRLVELLKQ 422 (502)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999975356699999999999999998678
No 28
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=0 Score=592.71 Aligned_cols=322 Identities=23% Similarity=0.228 Sum_probs=300.4
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
.....+.|....+.+....+|+.|+.|..+++++.++++..+||||.+..|+|+|+.+. ..-+..+...++|.+..|.+
T Consensus 64 eVv~~~~~~v~l~~~~~~~Gi~~G~~V~~tG~~l~V~VG~~lLGRVvD~lG~PiDgg~~-~~~~~~pi~~~~p~p~~R~~ 142 (445)
T PRK06820 64 EVVSIEQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPP-LTGQWRELDCPPPSPLTRQP 142 (445)
T ss_pred EEEEEECCEEEEEECCCCCCCCCCCEEEECCCCEEEECCCCCCCCEECCCCCCCCCCCC-CCCCEEECCCCCCCCHHCCC
T ss_conf 99998789799998878878899999997999608872824027870688753189988-77743203589968320268
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
+.+|++||+|+||+|+|||+|||.+|||++|+|||+|+.+|+++..++ ++|+++||||++||.||.+..
T Consensus 143 i~~pL~TGIraID~l~pigrGQR~gIfgg~GvGKT~Ll~~i~~~~~ad----v~V~~~IGeRgrEv~efie~~~~~~~~~ 218 (445)
T PRK06820 143 VEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAAD----VMVLALIGERGREVREFLEQVLTPEARA 218 (445)
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCC----EEEEEEEEEECHHHHHHHHHHHCCCCCC
T ss_conf 785112685466256774478742110689998122344565306788----7999987441289999999864237611
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf 342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~ 305 (423)
++++|++|+|+||..|++++++|+++||||+++|+|||++|||+||||+||||++...||+|+ .||+|++++...+|.+
T Consensus 219 rtvvV~atsd~p~~~R~~a~~~a~aiAEyfrd~Gk~VLli~DslTr~A~A~REisl~~gepP~~~gYp~~vf~~l~~L~E 298 (445)
T PRK06820 219 RTVVVVATSDRPALERLKGLSTATTVAEYFRERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLE 298 (445)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 06999416768989999998761148899986798489984465788889989998647999767778549988888887
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 25777777850012112012676554138898852266078980878847999740533542210155199999999999
Q gi|254780810|r 306 AARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFM 385 (423)
Q Consensus 306 ~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~ 385 (423)
+|++.+ .||||++|||+++ |+|++|||++++++++||||||||+||++|||||||++.|.||++..+++++|++.+..
T Consensus 299 Rag~~~-~GSITal~~V~~~-~dD~tdpi~d~~~silDG~ivLsr~La~~g~yPAIDvl~SvSRv~~~~~~~~h~~~a~~ 376 (445)
T PRK06820 299 RTGNSD-RGSITAFYTVLVE-GDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK 376 (445)
T ss_pred HHCCCC-CCCEEEEEEEEEC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHH
T ss_conf 304788-9756778889705-88767771676756515389984879866999981874056454622202999999999
Q ss_pred HHHHHHCCCCHHHHHHH
Q ss_conf 99996126937899999
Q gi|254780810|r 386 LRRIVSSMNSSDAIEFL 402 (423)
Q Consensus 386 ~r~~l~~~~~~e~~~~l 402 (423)
+|+.|+.|+++|.|..+
T Consensus 377 ~r~~la~y~e~e~li~~ 393 (445)
T PRK06820 377 LRRMLACYQEIELLVQI 393 (445)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999984
No 29
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=580.26 Aligned_cols=354 Identities=20% Similarity=0.198 Sum_probs=311.8
Q ss_pred HHHHHHHHCCCEEEEEEE---------EEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 999875205874899999---------85404770267504548666655604601000012212598799988624688
Q gi|254780810|r 40 SILKVLSGRDVEIIGEGV---------IEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREG 110 (423)
Q Consensus 40 ~Il~~~~~~~g~~~~eGv---------LEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~ 110 (423)
..++.....++.+.++|+ +++..+| +.+. ......++|....+++....+++.||.|..++ +...+
T Consensus 26 ~~G~V~~V~g~i~~v~GL~~~~~~Ge~~~i~~~~-~~~~---aeVv~~~~~~v~l~p~g~~~gi~~G~~V~~tg-~l~v~ 100 (450)
T PRK06002 26 IGGTVSEVTPSHYRVRGLSRFVRLGDRVAIRSDG-GTQL---GEVVRVDEDGVLVKPFEPRIPAGLGAAVFRKG-PLRIR 100 (450)
T ss_pred EEEEEEEEECCEEEEEECCCCCCCCCEEEEECCC-CCEE---EEEEEEECCCEEEEECCCCCCCCCCCEEEECC-CEEEC
T ss_conf 5689999938189999886667779889992799-7179---99998637818999876866688999898479-80444
Q ss_pred CCCCCCEEECCCCCCCHHHHHCCCCH-HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Q ss_conf 87630002222556887885124430-00200011223432477865321368889988655102312220487787899
Q gi|254780810|r 111 ERYFALLKVNAINFDVPERVRNKIHF-DNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTI 189 (423)
Q Consensus 111 ~~~~~L~rV~~vnG~~~d~~~~~~~f-~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ 189 (423)
.+..+||||.+..|+|+|++++.... +.++...++|.+..|.++.+|++||+|+||+|+|||||||.+|||++|+|||+
T Consensus 101 vg~~lLGRVvD~lG~PlDgkgpl~~~~~~~pi~~~~p~~~~R~~i~epL~TGIkaID~l~pigrGQR~gIfgg~GvGKTt 180 (450)
T PRK06002 101 PDPSWKGRVINALGEPIDGKGPLAPGTRPMSIDATAPPAMRRARVDTPLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKST 180 (450)
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCHHH
T ss_conf 68000478737888657899998877613515689968121278887663103133421460148777742689998759
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 9999999986118864699995087878999999840------3427823667888899999999999999999779928
Q gi|254780810|r 190 LLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDV 263 (423)
Q Consensus 190 ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dV 263 (423)
|+.||+++...+ .+++++||||++||.||.+.. +++||++|+|+||.+|+++++.++++||||+++|+||
T Consensus 181 Ll~~i~~~~~~d----~vV~~lIGeRgrEv~ef~e~~l~~~l~~svvV~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~V 256 (450)
T PRK06002 181 LLAMLARADAFD----TVVVALVGERGREVREFLEDTLADHLSKAVAVVATGDESPMMRRLAPKTATAIAEYFRDRGENV 256 (450)
T ss_pred HHHHHHHHCCCC----EEEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 999998625898----7999986474899999999876422000599970588982887655655443799999679967
Q ss_pred EEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCC-CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHC
Q ss_conf 99981638987762001366777677-75202466504687522577-77778500121120126765541388988522
Q gi|254780810|r 264 VILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARN-IKEGGSLTIIGTALVDTGSRMDEVIFEEFKGT 341 (423)
Q Consensus 264 ll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~-~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~ 341 (423)
|++|||+||||+||||+++..||+|+ .||+|+.|+..+++.+++++ .+++||||+++|++++ ++|++|||+++++++
T Consensus 257 Lli~DslTr~A~A~REisl~~gepP~r~gYp~~vf~~l~~LlERag~~~~~~GSITal~~V~~~-~dD~~~pI~d~~~si 335 (450)
T PRK06002 257 LLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVD-GDDHNDPVADSIRGT 335 (450)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEC-CCCCCCCHHHHHHHH
T ss_conf 9998261788889999998758999756778327766068887622577787306888888713-887677578878677
Q ss_pred CCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 66078980878847999740533542210155199999999999999961269378999999
Q gi|254780810|r 342 GNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 342 ~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~ 403 (423)
+||||||||+||++|||||||++.|+||++..+++++|++.+..+|+.|++|.+.|.|..+-
T Consensus 336 lDGhIvLsr~la~~G~~PAIDv~~SvSRv~~~~~~~~~~~~a~~~r~~la~y~e~~dli~~g 397 (450)
T PRK06002 336 LDGHIVLDRAIAEQGRYPAVDPLASISRLAKHVWTPEQRKLVRRLKSMIARFEETRDLRLMG 397 (450)
T ss_pred CCEEEEECHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35499984889867999972887342017712242999999999999999777789999975
No 30
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=0 Score=587.53 Aligned_cols=396 Identities=16% Similarity=0.128 Sum_probs=342.4
Q ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCC----CCCCCCCCEEECCC
Q ss_conf 98999999998389885766678999999987520587489999985404770267504548----66665560460100
Q gi|254780810|r 13 SPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDAN----YLAGPDDIYVSPSQ 88 (423)
Q Consensus 13 ~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~----yl~~~~DiyVs~sl 88 (423)
+..|+.++.++ .|+++..-.+ +.+++++....+|++.++|+-++. +|.|..+..+ .++.++|.+..+.+
T Consensus 4 ~~~~~~~~~~~-~i~~~~~~~~---~~~~G~V~~v~dgi~~v~GL~~~~---~gel~~f~~~~~g~v~~l~~d~v~~v~l 76 (502)
T PRK13343 4 NSDSWLARIRQ-RIARYELAPD---AQEIGRVESVGDGIAFVSGLPDAA---LDELLRFDGGSRGFAFNLEEELVGAVLL 76 (502)
T ss_pred CHHHHHHHHHH-HHHCCCCCCC---EEEEEEEEEECCCEEEEECCCCCC---CCCEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf 98999999999-9962688772---367679999828679992674142---3888997899779999414983999995
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 00122125987999886246888763000222255688788512443000200011223432477865321368889988
Q gi|254780810|r 89 IKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLI 168 (423)
Q Consensus 89 ir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~ 168 (423)
+...+|++||.|..|+++.++|++..+||||.++.|+|+|+++++...+.++...++|.+..|.++.+|++||+|+||+|
T Consensus 77 g~~~~i~~G~~V~~TG~~l~VpVG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epL~TGIkaID~l 156 (502)
T PRK13343 77 DDTADLRAGTEVKRTGRVLEVPVGDALLGRVIDPLGRPLDGGGPLEATATRPIERPAPAIIERDSVTEPLQTGLKVIDAL 156 (502)
T ss_pred CCCCCCCCCCEEEECCCCEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEECC
T ss_conf 59878899999996899548875731025873788344389999887643214688978332166675431260674055
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHH
Q ss_conf 6551023122204877878999999999986118864699995087878999999840-------342782366788889
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAAR 241 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~ 241 (423)
+|||||||.+|||++|+|||+|+.+++ +++...+++|||++||||++||.+|.+.. +++||++|+|+||.+
T Consensus 157 ~pigrGQR~gIfg~~GvGKT~L~~~~I--~nq~~~~vi~Vyv~IGer~~ev~~~v~~l~~~gal~~tvvV~ata~~p~~~ 234 (502)
T PRK13343 157 IPIGRGQRELIIGDRQTGKTAIAIDAI--INQKDKDVICVYVAIGQKASTVARVIDTLREHGALEYTTVVVAEASDPPGL 234 (502)
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHHHH--HHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHCCCCHHHEEEECCCCCCHHH
T ss_conf 664678577513678888048999999--972578874999996045165989999987648513122452377898688
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCC---CCCCCCE
Q ss_conf 999999999999999977992899981638987762001366777677-752024665046875225777---7778500
Q gi|254780810|r 242 HVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNI---KEGGSLT 317 (423)
Q Consensus 242 ~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~---~~~Gs~T 317 (423)
|++++++|+++|||||++|+|||++||||||||+||||++...||+|+ .|||+..++..+++.+++.+. .++||||
T Consensus 235 r~~ap~~a~aiAEyFrd~GkdVLlv~Ddltr~A~A~REislllgrpPgr~gYPg~vf~~~srLlERa~~~~~~~ggGSIT 314 (502)
T PRK13343 235 QYLAPFAGCAIAEYFRDRGRDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERATKLSPELGGGSLT 314 (502)
T ss_pred HHHHHHHHCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 75556652025799996699679999566899999989999748998766769458877268998887526889984664
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 12112012676554138898852266078980878847999740533542210155199999999999999961269378
Q gi|254780810|r 318 IIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSD 397 (423)
Q Consensus 318 ~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e 397 (423)
++++++++ ++|+++||++++++++||||||||+||++|||||||++.|+||.+...+.+.+++.+..+|..|++|+|+|
T Consensus 315 alp~V~~~-~dDis~pIp~~v~sItDGqIvLsr~La~~G~~PAIdv~~SvSRVg~~aq~~~~k~va~~lr~~laqy~el~ 393 (502)
T PRK13343 315 ALPIIETQ-AGDLAAYIPTNLISITDGQIFLDSDLFASGQRPAVDVGKSVSRVGGKAQHPAIRKESGRLRLDYAQFLELE 393 (502)
T ss_pred EEEEEECC-CCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 51699724-88756634565652226169972453226837851787761356857788999999999999999899999
Q ss_pred HHHHHHHH--------HHCCCCHHHHHHH
Q ss_conf 99999998--------4028998999986
Q gi|254780810|r 398 AIEFLIDK--------LKQTKDNKDFFYS 418 (423)
Q Consensus 398 ~~~~l~~~--------~~~~~~n~e~l~~ 418 (423)
++..+-.. +.+.+.-.|||+|
T Consensus 394 ~f~~fg~~ld~~~~~~l~rg~r~~~~lkQ 422 (502)
T PRK13343 394 AFTRFGARLDAGTRKQITRGRRLRELLKQ 422 (502)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99987435899999999999999998578
No 31
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=0 Score=580.80 Aligned_cols=323 Identities=20% Similarity=0.202 Sum_probs=297.2
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCC---HHHCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443---000200011223432
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIH---FDNLTPLYPDKRFNM 150 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~---f~~l~p~~p~~~i~l 150 (423)
......+|..+.+++....+|+.|+.|..++++.+++++..+||||.++.|+|+|+...... -+..+...+++.+..
T Consensus 47 EVvgf~~~~~~l~~~~~t~Gi~~g~~V~~tg~~~~V~VG~~lLGRV~d~lG~piD~l~~~~~~~~~~~~~i~~~pp~p~~ 126 (427)
T PRK08149 47 QVVGFQRERTILSLIGNAQGLSRQVVLYPTGRALSIWVGPALLGAVLDPTGKIVERFAPPTVAPISELRPIDVAPPSYAE 126 (427)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 89731497799997879888899999997899518870751207977778888668898777765320304589968256
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH----
Q ss_conf 4778653213688899886551023122204877878999999999986118864699995087878999999840----
Q gi|254780810|r 151 ELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---- 226 (423)
Q Consensus 151 e~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---- 226 (423)
|.++.+|++||+|+||+|+|+|||||.+|||++|+|||+|+.||+++..++ ++++++||||+|||.||++..
T Consensus 127 R~~i~e~l~TGIraID~l~pigkGQR~gIf~gsGvGKs~Ll~~i~~~~~ad----v~Via~IGeRgrEv~efi~~~~~~~ 202 (427)
T PRK08149 127 RRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMNMLIEHTEAD----VFVIGLIGERGREVTEFVEMLRASH 202 (427)
T ss_pred CCCCCCCEECCCEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC----EEEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 078885000386431044532467540002789986779999888635899----8999970233789999999750368
Q ss_pred ---CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHH
Q ss_conf ---342782366788889999999999999999977992899981638987762001366777677-7520246650468
Q gi|254780810|r 227 ---QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKR 302 (423)
Q Consensus 227 ---~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~ 302 (423)
++++|++|+|+||.+|++++++|+++||||+++|+|||++|||+||||+|+||++.+.||+|+ .||+|+.++...+
T Consensus 203 ~l~rsvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~GYp~svf~~l~~ 282 (427)
T PRK08149 203 KKEKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPR 282 (427)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 52036899715889989999999887789999986798379961757888889989998647999876878529988789
Q ss_pred HHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHH
Q ss_conf 75225777777850012112012676554138898852266078980878847999740533542210155199999999
Q gi|254780810|r 303 FFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQK 382 (423)
Q Consensus 303 ~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~ 382 (423)
++++|++.. +||||++||++++ |+|++|||+|++++++||||||||+||++|||||||+++|.||++..+++++|++.
T Consensus 283 l~ERag~~~-~GSIT~~~tV~~~-~dD~tdPi~d~~~~ilDGhivLsr~la~~g~yPAIDvl~S~SR~~~~i~~~~h~~~ 360 (427)
T PRK08149 283 LLERPGATS-AGSITAFYTVLLE-SEEEADPIGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDPKHREL 360 (427)
T ss_pred HHHHCCCCC-CCCEEEEEEEEEC-CCCCCCCHHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHH
T ss_conf 876234678-9855467568724-88878764665555006369996768865999981875155436444425999999
Q ss_pred HHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999996126937899999
Q gi|254780810|r 383 VFMLRRIVSSMNSSDAIEFL 402 (423)
Q Consensus 383 ~~~~r~~l~~~~~~e~~~~l 402 (423)
+..+|+.|+.|++++.+..+
T Consensus 361 a~~~r~~la~y~e~~~li~i 380 (427)
T PRK08149 361 AAAFRKLLTRLEELQLFIDL 380 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999984
No 32
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=586.33 Aligned_cols=324 Identities=23% Similarity=0.211 Sum_probs=301.5
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
......+|....+++....+|+.|+.|..+++++.++++..+||||.+..|+|+|+.++......+....|+..+..|.+
T Consensus 55 EVVgf~~~~~~L~p~~~~~Gi~~G~~V~~~g~~~~v~vg~~lLGRVvD~~G~PlDg~g~~~~~~~~~~~~~~~nPl~R~~ 134 (434)
T PRK07196 55 QVVGFDRDITYLMPFKHPGGVLGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRA 134 (434)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCHHHCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 99998199699998888778899999998899876776862247577678862689988888846556689998301378
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
+.+|++||+|+||+|+|||+|||.+|||++|+|||+|+.||+++..++ ++|+++||||+|||.||.+..
T Consensus 135 i~e~l~TGIraID~l~pigrGQRigIfggsGvGKs~Ll~~I~r~~~ad----vvVi~lIGeRgrEv~efi~~~~~~~~l~ 210 (434)
T PRK07196 135 VDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD----VVVVGLIGERGREVKEFIEHSLQAAGMA 210 (434)
T ss_pred CCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC----EEEEEECCEEHHHHHHHHHHHHHCCCCC
T ss_conf 887212686244155770245242101478997899999998973799----8999742223499999999874246743
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf 342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~ 305 (423)
++++|++|+|+||..+++++++|+++||||+++|+|||++|||+||||+|+||++...||+|+ .||+|++++...++.+
T Consensus 211 ~svvv~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~svf~~l~~l~E 290 (434)
T PRK07196 211 KSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAE 290 (434)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 26999845889878888999889989999986798569995474688999999997568999867758438888589998
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 25777777850012112012676554138898852266078980878847999740533542210155199999999999
Q gi|254780810|r 306 AARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFM 385 (423)
Q Consensus 306 ~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~ 385 (423)
+|++.+++||||++||++++ |+|++|||++++++++||||||||+||++|||||||+++|.||++..+++++|++.+.+
T Consensus 291 RaG~~~~~GSITa~~tv~~~-~dD~~dpi~d~~~silDGhivLsr~la~~G~yPaIdvl~S~SR~m~~i~~~~~~~~a~~ 369 (434)
T PRK07196 291 SAGNSSGNGTMTAIYTVLAE-GDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASL 369 (434)
T ss_pred HHCCCCCCEEEEEEEEEECC-CCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHH
T ss_conf 52157886248888888626-88878870666575507549984768866999973886264225510166999999999
Q ss_pred HHHHHHCCCCHHHHHHH
Q ss_conf 99996126937899999
Q gi|254780810|r 386 LRRIVSSMNSSDAIEFL 402 (423)
Q Consensus 386 ~r~~l~~~~~~e~~~~l 402 (423)
+|++|+.|+++|.|..+
T Consensus 370 ~r~~la~y~e~e~li~~ 386 (434)
T PRK07196 370 LKQCYADYMAIKPLIPL 386 (434)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999985
No 33
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=575.49 Aligned_cols=325 Identities=23% Similarity=0.227 Sum_probs=304.4
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
......+|..+.+++....+|+.|+.|..++++..++++..+||||.++.|+|+|+.+.....+..+...+++.+..|.+
T Consensus 37 EVv~~~~~~~~l~~~~~t~Gi~~G~~V~~tg~~~~vpvg~~lLGRV~d~~G~PlDg~~~~~~~~~~~i~~~~p~p~~R~~ 116 (413)
T TIGR03497 37 EVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPR 116 (413)
T ss_pred EEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf 99998299799999369878899999998999747886843056887767665589867777611444468996344067
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
+.+|++||+|+||+|+|||||||.+|||++|+|||+|+.||+++..++ ++++++||||+|||.||.+..
T Consensus 117 i~e~l~TGIraID~l~pigrGQRigIfag~GvGKt~Ll~~ia~~~~ad----v~Vi~liGERgrEv~ef~~~~l~~~~l~ 192 (413)
T TIGR03497 117 IRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNAKAD----INVIALIGERGREVRDFIEKDLGEEGLK 192 (413)
T ss_pred CCCEEECCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC----CCEEEEEEEECHHHHHHHHHHHCCCCCC
T ss_conf 883420386542165761137544210589987769999999874378----5238886332289999999863125642
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf 342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~ 305 (423)
+++||++|+|+||.+|++++++|+++||||+++|||||++|||+||||+||||++.+.||+|+ .||+|+.++...+|.+
T Consensus 193 rtvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~~s~l~~l~E 272 (413)
T TIGR03497 193 RSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLE 272 (413)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 15999845878879998877463278999986799689997371298899999998658999887868549988789888
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 25777777850012112012676554138898852266078980878847999740533542210155199999999999
Q gi|254780810|r 306 AARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFM 385 (423)
Q Consensus 306 ~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~ 385 (423)
+|++. ++||||+++|++++ |||++|||+|++++++||||||||+||++|||||||++.|.||++..+++++|++.+..
T Consensus 273 Rag~~-~~GSIT~~~~v~~~-~dD~tdPi~d~~~si~DG~ivLsr~la~~g~yPaIdvl~S~SR~~~~~~~~~h~~~a~~ 350 (413)
T TIGR03497 273 RSGNS-QKGSITGFYTVLVD-GDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVMNEIVSEEHKELAGK 350 (413)
T ss_pred HHCCC-CCCCEEEEEEEEEC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHH
T ss_conf 61389-99854667789712-88767771666757506189986889866999981864246553431156999999999
Q ss_pred HHHHHHCCCCHHHHHHHHH
Q ss_conf 9999612693789999999
Q gi|254780810|r 386 LRRIVSSMNSSDAIEFLID 404 (423)
Q Consensus 386 ~r~~l~~~~~~e~~~~l~~ 404 (423)
+|++++.|.++|.+..+..
T Consensus 351 ~r~~~a~y~e~~~li~~g~ 369 (413)
T TIGR03497 351 LRELLAVYKEAEDLINIGA 369 (413)
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 9999998899999999628
No 34
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=0 Score=569.88 Aligned_cols=321 Identities=19% Similarity=0.223 Sum_probs=299.1
Q ss_pred CCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56046010000122125987999886246888763000222255688788512443000200011223432477865321
Q gi|254780810|r 80 DDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKD 159 (423)
Q Consensus 80 ~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~ 159 (423)
++.+....+....+|+.|+.|..++++.++|++..+||||.++.|+|+|+++++...+.++...++|.+..|.++.+|++
T Consensus 51 ~~~v~~i~l~~t~Gl~~G~~V~~tg~~l~VpVG~~lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~~p~~~~r~~~~e~l~ 130 (466)
T PRK09280 51 DGVVRTIAMGSTDGLVRGMEVKDTGAPISVPVGKATLGRIFNVLGEPIDEAGPIGAEERWPIHRKAPSFEELSTKTEILE 130 (466)
T ss_pred CCEEEEEECCCCCCCCCCCEEEECCCCEEEEECHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98699997468678789999995899549870864427886877752678998767654565678986323567786300
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEE
Q ss_conf 3688899886551023122204877878999999999986118864699995087878999999840-------342782
Q gi|254780810|r 160 ISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVIS 232 (423)
Q Consensus 160 ~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~ 232 (423)
||+|+||+|+|||||||.+|||++|+|||+|+.++++++.++|.+ ++++++||||+||+.||++.. ++++|+
T Consensus 131 TGIkaID~l~pigkGqrigIfggaGvGKTvLl~eli~n~a~~~~~-v~V~a~IGER~rE~~e~~~e~~~~g~l~~tvlV~ 209 (466)
T PRK09280 131 TGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKEHGG-YSVFAGVGERTREGNDLYHEMKESGVLDKTALVF 209 (466)
T ss_pred CCCHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 181322231671377479855799998008999999999986599-0999971423688999999766428763489999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCC
Q ss_conf 36678888999999999999999997-7992899981638987762001366777677-752024665046875225777
Q gi|254780810|r 233 STFDESAARHVQVAEMVIAKAKCLVE-YGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNI 310 (423)
Q Consensus 233 st~d~~~~~~~~~a~~a~~~a~~~~e-~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~ 310 (423)
+|+|+||..|++++++|+++|||||+ +|+|||++|||+||||+||||++...||+|+ .||+|+.++...++.+++.+.
T Consensus 210 ~~~depp~~R~~~~~~a~tiAEyFRD~~g~dVLl~~D~ltRfa~A~rEvslllge~Ps~~GYppsl~~~l~~L~ER~~~~ 289 (466)
T PRK09280 210 GQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITST 289 (466)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 65889968999999999999999886179828999726689999999999862799987788942898989999852468
Q ss_pred CCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHH-HCCCHHHHHHHHHHHHH
Q ss_conf 77785001211201267655413889885226607898087884799974053354221015-51999999999999999
Q gi|254780810|r 311 KEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKED-LLVERQDLQKVFMLRRI 389 (423)
Q Consensus 311 ~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~-~l~~~~~~~~~~~~r~~ 389 (423)
. +||||+++||+++ +||++|||++++++++||||||||+||++|||||||++.|.||.++ .+++++|++.+..+|+.
T Consensus 290 ~-~GSIT~i~~V~vp-~DD~tdPi~~~~~silDg~ivLsR~La~~G~yPAID~l~S~SRvm~p~ivg~~H~~~a~~vr~~ 367 (466)
T PRK09280 290 K-KGSITSVQAVYVP-ADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLVVGEEHYDVAREVQQI 367 (466)
T ss_pred C-CCCEEEEEEEEEC-CCCCCCCCHHHHHHHCCEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9-9861378999954-8877787177652313407997265876799998686654012578321899999999999999
Q ss_pred HHCCCCHHHHHHHH
Q ss_conf 61269378999999
Q gi|254780810|r 390 VSSMNSSDAIEFLI 403 (423)
Q Consensus 390 l~~~~~~e~~~~l~ 403 (423)
|+.|+++|++..++
T Consensus 368 L~~Y~elediIail 381 (466)
T PRK09280 368 LQRYKELQDIIAIL 381 (466)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99888899999974
No 35
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=0 Score=568.05 Aligned_cols=291 Identities=25% Similarity=0.252 Sum_probs=275.3
Q ss_pred ECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 24688876300022225568878851244300020001122343247786532136888998865510231222048778
Q gi|254780810|r 106 APREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRT 185 (423)
Q Consensus 106 ~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~ 185 (423)
|.++|++..+||||.++.|+|+|+.+++...+.++...+++.+..|.++.+|++||+|+||+|+|||||||.+|||++|+
T Consensus 1 Pl~vpVg~~lLGRVid~~G~PiDg~~~i~~~~~~pi~~~ap~~~~R~~v~e~l~TGI~~ID~l~pigrGQR~~Ifg~~g~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHCCCCCCCCCCEEEEECCCCC
T ss_conf 96535576651747678834157999999986152568995803307888751157704200266247987874369999
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999986118864699995087878999999840-------34278236678888999999999999999997
Q gi|254780810|r 186 GKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLVE 258 (423)
Q Consensus 186 gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e 258 (423)
|||+|+.+|+++..++ ++|+++||||++||+||.+.. +++||++|+|+||.+|++++++|+++||||+|
T Consensus 81 GKt~Ll~~i~~~~~~~----v~V~~~IGer~rev~e~~~~~~~~~~l~~tvvv~atad~~~~~r~~a~~~a~~~AEyfrd 156 (326)
T cd01136 81 GKSTLLGMIARGTTAD----VNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRD 156 (326)
T ss_pred CCCHHHHHHHHCCCCC----EEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8466787686414677----599996053388999999986245653222899606889989999988877777889997
Q ss_pred CCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHH
Q ss_conf 7992899981638987762001366777677-752024665046875225777777850012112012676554138898
Q gi|254780810|r 259 YGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEE 337 (423)
Q Consensus 259 ~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~ 337 (423)
+|+|||++||||||||+||||+++..||+|+ +||++..++..++++++|++.+ +||||+++|++++ |+||+|||+++
T Consensus 157 ~G~dVL~~~Dsltr~A~A~rEisl~~g~~P~~~gyp~~~f~~~~~l~ERag~~~-~GSIT~i~~v~~~-~dd~tdpi~~~ 234 (326)
T cd01136 157 QGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSD-KGSITAFYTVLVE-GDDLNEPIADA 234 (326)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECC-CCCCCCCCHHH
T ss_conf 587337875246899999999888648998756677668888789888641799-9852444578705-98878862788
Q ss_pred HHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 85226607898087884799974053354221015519999999999999996126937899999
Q gi|254780810|r 338 FKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFL 402 (423)
Q Consensus 338 ~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l 402 (423)
+++++||||+|||+||++|||||||+++|+||++..+++++|++.++.+|+.|++|+++|.+..+
T Consensus 235 ~~~i~Dg~ivLsr~La~~g~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~ 299 (326)
T cd01136 235 VRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTPEHKEAARKLRELLSAYQEVEDLIRI 299 (326)
T ss_pred HHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98754738998588996799997488627533660006799999999999999989999999985
No 36
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=0 Score=566.37 Aligned_cols=321 Identities=18% Similarity=0.202 Sum_probs=298.4
Q ss_pred CCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55604601000012212598799988624688876300022225568878851244300020001122343247786532
Q gi|254780810|r 79 PDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENK 158 (423)
Q Consensus 79 ~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~ 158 (423)
.++.+..+++....+|+.|+.|..++++.++|++..+||||.++.|+|+|+.++....+.++...+++.+..|.++.+|+
T Consensus 46 ~~~~v~~i~l~~t~Gl~~G~~V~~tg~~l~VpVG~~lLGRV~d~lG~PiDg~~~i~~~~~~pi~~~~p~~~~r~~~~e~l 125 (459)
T PRK12597 46 DETTVRAIALGSTAGLARGDEVRNTGAPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTELL 125 (459)
T ss_pred CCCEEEEEECCCCCCCCCCCEEEECCCCEEEEECHHHCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 79879999813877888999999689945987086333687678886268888888774555467899843357778720
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEE
Q ss_conf 13688899886551023122204877878999999999986118864699995087878999999840-------34278
Q gi|254780810|r 159 DISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVI 231 (423)
Q Consensus 159 ~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv 231 (423)
+||+|+||+|+|||||||.+|||++|+|||+|+.++++++.+++.. ++++++||||+||+.||++.. ++++|
T Consensus 126 ~TGIkaID~l~pigrGqrigIfggaGvGKTvL~~~ii~n~~~~~~~-v~V~~~iGER~rEv~e~~~el~~~g~l~~tvvV 204 (459)
T PRK12597 126 ETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNISKRHQG-SSVFAGVGERSREGHELYLEMKESGVLDKTVMV 204 (459)
T ss_pred CCCHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC-CEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 0380555412663578777743689998215789999987755178-368886245468899999998636875248999
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCC
Q ss_conf 236678888999999999999999997-7992899981638987762001366777677-75202466504687522577
Q gi|254780810|r 232 SSTFDESAARHVQVAEMVIAKAKCLVE-YGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARN 309 (423)
Q Consensus 232 ~st~d~~~~~~~~~a~~a~~~a~~~~e-~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~ 309 (423)
++|+|+||.+|++++++|+++|||||+ +|+|||++|||+||||+||||++...||+|+ .||+|+.+....++.+++.+
T Consensus 205 ~~~~depp~~R~~~~~~a~tiAEyFrD~~g~dVLl~~D~ltR~A~A~rEisl~lge~P~~~GY~psl~~~l~~l~ER~~~ 284 (459)
T PRK12597 205 YGQMNEPPGARMRVVLTGLTAAEYFRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAALQERIAS 284 (459)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 80688999999877778889999998637997899955768999999999986379998667695178889999987516
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCH-HHCCCHHHHHHHHHHHH
Q ss_conf 77778500121120126765541388988522660789808788479997405335422101-55199999999999999
Q gi|254780810|r 310 IKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKE-DLLVERQDLQKVFMLRR 388 (423)
Q Consensus 310 ~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~-~~l~~~~~~~~~~~~r~ 388 (423)
.. +||||+++|++++ +||++|||++++++++||||||||+||++|||||||++.|.||.+ +.+++++|++.+..+|+
T Consensus 285 ~~-~GSIT~~~~V~v~-~dD~tdPi~~~~~silDg~ivLsr~la~~g~yPAID~l~S~SR~m~~~ivg~~H~~~a~~~~~ 362 (459)
T PRK12597 285 TK-NGSITSIQAVYVP-ADDLTDPAAVAIFSHLDSSVVLSRDQAAKGIYPAIDPLASSSRLLDPLVVGERHYDAAIEVKR 362 (459)
T ss_pred CC-CCCEEEEEEEEEC-CCCCCCCCHHHHEEECCEEEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 89-9751267899814-888677525543110342899825587779997667666532247876699999999999999
Q ss_pred HHHCCCCHHHHHHH
Q ss_conf 96126937899999
Q gi|254780810|r 389 IVSSMNSSDAIEFL 402 (423)
Q Consensus 389 ~l~~~~~~e~~~~l 402 (423)
.|++|+++|++..+
T Consensus 363 ~l~~y~eledii~i 376 (459)
T PRK12597 363 ILQRYKELEDVIAI 376 (459)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99998899999997
No 37
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=0 Score=560.51 Aligned_cols=321 Identities=16% Similarity=0.166 Sum_probs=298.7
Q ss_pred CCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56046010000122125987999886246888763000222255688788512443000200011223432477865321
Q gi|254780810|r 80 DDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKD 159 (423)
Q Consensus 80 ~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~ 159 (423)
++.+...++....+|++|+.|..++++.++|++..+||||.++.|+|+|+++++...+.+++..++|.+..+.++.++++
T Consensus 61 ~~~Vr~i~l~~t~GL~~G~~V~~tg~~l~VPVG~~lLGRV~d~lG~PiDg~gpi~~~~~~pi~~~aP~~~~r~~~~e~le 140 (480)
T CHL00060 61 NNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFE 140 (480)
T ss_pred CCEEEEEECCCCCCCCCCCEEEECCCCEEEEECHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99799996568778899899995899549872853316878888883578899876650325678998555567786110
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------------
Q ss_conf 3688899886551023122204877878999999999986118864699995087878999999840-------------
Q gi|254780810|r 160 ISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------------- 226 (423)
Q Consensus 160 ~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------------- 226 (423)
||+|+||+|+|||||||.+|||++|+|||+|+.++++++++.|.+ ++++++||||+||+.||++..
T Consensus 141 TGIkaID~l~pigkGQRigIfggaGvGKTvLl~eli~niak~~~~-v~V~a~IGER~RE~~e~~~e~~e~gvl~~~~~~~ 219 (480)
T CHL00060 141 TGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGG-VSVFGGVGERTREGNDLYMEMKESGVINEQNIAE 219 (480)
T ss_pred CCHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC-EEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 270444312540036688765689988789999999612003798-8999996677367999999998718553355443
Q ss_pred -CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHH
Q ss_conf -3427823667888899999999999999999779-92899981638987762001366777677-75202466504687
Q gi|254780810|r 227 -QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYG-LDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRF 303 (423)
Q Consensus 227 -~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G-~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~ 303 (423)
+..+|++++|+||..|+++|++|+++|||||++| +|||++|||+||||+||||++...||+|+ .||+|+.++...++
T Consensus 220 s~~vlV~~~~depp~~R~~~~~~a~tiAEyFRd~~~~dVLl~~D~ltR~A~A~REIslllge~P~~~GYppslf~~l~~L 299 (480)
T CHL00060 220 SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSL 299 (480)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 04899973567876889999999888999998748970899954628999888789986279998667896488887788
Q ss_pred HHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHH-HCCCHHHHHH
Q ss_conf 522577777785001211201267655413889885226607898087884799974053354221015-5199999999
Q gi|254780810|r 304 FGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKED-LLVERQDLQK 382 (423)
Q Consensus 304 ~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~-~l~~~~~~~~ 382 (423)
.+++.+.. +||||+++|++++ +||++|||++++++++||||||||+||++|||||||++.|.||.++ .+++++|++.
T Consensus 300 ~ER~~~~~-~GSITa~~~V~v~-~DD~tdPip~~~~silDg~ivLsr~La~~g~yPAID~l~S~Sr~m~p~iv~~~H~~~ 377 (480)
T CHL00060 300 QERITSTK-EGSITSIQAVYVP-ADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYET 377 (480)
T ss_pred HHHHCCCC-CCCEEEEEEEEEC-CCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHCCCCCCCCCHHHHHH
T ss_conf 88632788-8741567789703-776667614555221251499836588789989737520100047976489999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999999961269378999999
Q gi|254780810|r 383 VFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 383 ~~~~r~~l~~~~~~e~~~~l~ 403 (423)
+.++|+.|++|+++|++..++
T Consensus 378 a~~v~~~L~~Y~el~diIail 398 (480)
T CHL00060 378 AQRVKQTLQRYKELQDIIAIL 398 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999989999999975
No 38
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=563.15 Aligned_cols=324 Identities=16% Similarity=0.178 Sum_probs=303.6
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCC
Q ss_conf 66655604601000012212598799988624688876300022225568878851244300020001122343247786
Q gi|254780810|r 76 LAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNP 155 (423)
Q Consensus 76 l~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~ 155 (423)
....++.+...++....+|+.|+.|..++++.++|++..+||||.++.|+|+|++++....+.++...++|.+..|.++.
T Consensus 40 ~~l~~~~V~~i~l~~t~Gl~~G~~V~~tg~~l~VpVG~~lLGRV~d~lG~PiDg~g~i~~~~~~~i~~~~p~~~~R~~~~ 119 (449)
T TIGR03305 40 SQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKS 119 (449)
T ss_pred EEECCCEEEEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 12279889999904877888999999289954887172106788805665467899988764132357899855567778
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CC
Q ss_conf 53213688899886551023122204877878999999999986118864699995087878999999840-------34
Q gi|254780810|r 156 ENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QG 228 (423)
Q Consensus 156 ~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~ 228 (423)
+|++||+|+||+|+|||||||.+|||++|+|||+|+.++++++.+++.+ ++++++||||+||+.||++.. ++
T Consensus 120 e~l~TGIkaID~l~pigrGqr~gIfggaGvGKT~Ll~e~i~n~~~~~~~-v~V~~~IGER~rE~~e~~~el~~~g~l~~t 198 (449)
T TIGR03305 120 EVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQG-VSIFCGIGERCREGEELYREMKEAGVLDNT 198 (449)
T ss_pred CCEECCCEEHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCC-EEEEEEEEEEHHHHHHHHHHHHHCCCCCEE
T ss_conf 6400284402302452457565665279998410189999865641488-689999745216799999998753665426
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHC
Q ss_conf 27823667888899999999999999999-77992899981638987762001366777677-75202466504687522
Q gi|254780810|r 229 EVISSTFDESAARHVQVAEMVIAKAKCLV-EYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGA 306 (423)
Q Consensus 229 ~vv~st~d~~~~~~~~~a~~a~~~a~~~~-e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ 306 (423)
++|++|+|+||..|++++++|+++||||| ++|+|||++|||+||||+||||++...||+|+ .||+|+.++...++.++
T Consensus 199 v~V~a~~depp~~R~~~~~~a~tiAEyfrd~~g~dVLl~~D~ltr~a~A~rEvsl~lg~~P~~~GYpp~vf~~l~~L~ER 278 (449)
T TIGR03305 199 VMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEER 278 (449)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99983698987999999998776999988617980899996768999999899986389998778797199998999985
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHH-HCCCHHHHHHHHH
Q ss_conf 577777785001211201267655413889885226607898087884799974053354221015-5199999999999
Q gi|254780810|r 307 ARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKED-LLVERQDLQKVFM 385 (423)
Q Consensus 307 ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~-~l~~~~~~~~~~~ 385 (423)
+.+.. +||+|+++|++++ ++|++|||++++++++||||||||+||++|||||||++.|.||++. .+++++|++.+..
T Consensus 279 ~~~~~-~GSITa~~~V~~~-~dD~tdPi~~~~~silDg~ivLsr~la~~G~yPAId~l~S~SRv~~~~iv~~~H~~va~~ 356 (449)
T TIGR03305 279 IATTS-DGAITSIQAVYVP-ADDFTDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVGERHYDLARE 356 (449)
T ss_pred HCCCC-CCCEEEEEEEECC-CCCCCCCHHHHHEEECCCEEEEEHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHH
T ss_conf 24899-9866788789713-887667555543101270278707689679999717763355348810067999999999
Q ss_pred HHHHHHCCCCHHHHHHH
Q ss_conf 99996126937899999
Q gi|254780810|r 386 LRRIVSSMNSSDAIEFL 402 (423)
Q Consensus 386 ~r~~l~~~~~~e~~~~l 402 (423)
+|+.|++|++++++..+
T Consensus 357 ~~~~la~y~el~diiai 373 (449)
T TIGR03305 357 VRQTLAQYEELKDIIAM 373 (449)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999988999999987
No 39
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=0 Score=560.45 Aligned_cols=352 Identities=19% Similarity=0.148 Sum_probs=310.1
Q ss_pred HHHHHHHCCCEEEEEEE------EE-EECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 99875205874899999------85-404770267504548666655604601000012212598799988624688876
Q gi|254780810|r 41 ILKVLSGRDVEIIGEGV------IE-VLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERY 113 (423)
Q Consensus 41 Il~~~~~~~g~~~~eGv------LE-Il~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~ 113 (423)
++++....+..+.++|. +| |...+.+-+. .......+|..+.+++....+|+.|+.|..+++++.++++.
T Consensus 20 ~GrV~~V~G~~ie~~g~~~~iGelc~I~~~~~~~i~---aeVvgf~~~~~~l~p~~~~~Gi~~G~~V~~~g~~~~v~vg~ 96 (434)
T PRK05922 20 CGLLSRVSGNLLEAQGLSACLGELCQISLPKSPPIL---AEVIGFHNQTTLLMSLSPIHYVALGAEVLPLRRPPSLHLSD 96 (434)
T ss_pred EEEEEEEECEEEEEEECCCCCCCEEEEEECCCCEEE---EEEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCEEECCC
T ss_conf 679999966499998068787985999818998789---99998729979999777766789999999899987677680
Q ss_pred CCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
Q ss_conf 30002222556887885124430002000112234324778653213688899886551023122204877878999999
Q gi|254780810|r 114 FALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQN 193 (423)
Q Consensus 114 ~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ 193 (423)
.+||||.+..|+|+|+.++....+..+...+++.+..|.++.+|++||+|+||+|+|||||||.+|||++|+|||+|+.+
T Consensus 97 ~lLGRVld~~G~PiDg~~~~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIraID~l~pigrGQR~gIf~g~GvGKt~Ll~~ 176 (434)
T PRK05922 97 HLLGRVLDGFGNPLDGKEQLPKTHLKPLFSPPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLST 176 (434)
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 61465726884644899999987605245899482221688875547855673567724676777307999978999986
Q ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 999986118864699995087878999999840-------3427823667888899999999999999999779928999
Q gi|254780810|r 194 IAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVIL 266 (423)
Q Consensus 194 ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~ 266 (423)
|+++.. ..++++++||||+|||.||.+.. ++++|++|+|+||..|+++|++|+++||||+++|+|||++
T Consensus 177 ia~~~~----~~v~V~alIGeR~rEv~efie~~~~~~~~~~tvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~ 252 (434)
T PRK05922 177 IAKGSK----STINVIALIGERGREVREYIEQHKEGLKAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFI 252 (434)
T ss_pred HHHCCC----CCEEEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 765367----8759998455138999999998661345210378750377887888999988767999999779967999
Q ss_pred EECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCE
Q ss_conf 81638987762001366777677-75202466504687522577777785001211201267655413889885226607
Q gi|254780810|r 267 LDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSE 345 (423)
Q Consensus 267 ~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~ 345 (423)
||||||||+||||++...||+|+ .||+|+.++...++.++|++. ++||||++||||++ ++ .+|||+|++++++|||
T Consensus 253 ~Dsltr~A~A~REisl~~gepP~~~gYp~svf~~l~~L~ERag~~-~~GSITa~~tVl~~-~~-~~dpi~d~~~silDGh 329 (434)
T PRK05922 253 MDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNN-DKGSITALYAILHY-PN-HPDIFTDYLKSLLDGH 329 (434)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC-CCCCCCEEEEEEEC-CC-CCCCCCCCCHHHEEEE
T ss_conf 547889999998999864899987688944999878888604379-99655649899853-89-8765677333022224
Q ss_pred EEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 8980878847999740533542210155199999999999999961269378999999
Q gi|254780810|r 346 IVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 346 i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~ 403 (423)
|||||+ +.+++||||||++|.||.+..+++++|++.+..+|++|+.|.++|.+..+.
T Consensus 330 IvLsr~-~~~~~~PAIDvl~S~SR~~~~~~~~~h~~~a~~~r~~la~y~e~~dli~~G 386 (434)
T PRK05922 330 FFLTPQ-GKALASPPIDILTSLSRSARQLALPHHYAAAEELRSLLKAYHEALDIIQLG 386 (434)
T ss_pred EEECHH-HHHCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 675354-661578975656676451423356999999999999999999999999852
No 40
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=0 Score=517.28 Aligned_cols=329 Identities=16% Similarity=0.108 Sum_probs=300.9
Q ss_pred CCCCCCCCCEEECCCCCCCCCCC-CCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125-98799988624688876300022225568878851244300020001122343247
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKT-GDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMEL 152 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~-GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~ 152 (423)
.......|..+.+.+....+|+. |..|..++++++++++..+||||.+..|+|+|+.++....+..+...+++.+..|.
T Consensus 42 eVi~~~~d~~~iqv~e~t~Gl~~~g~~V~~tG~plsV~vG~~lLGRV~DglGrPlDg~~~i~~~~~~~i~g~~~np~~R~ 121 (460)
T PRK04196 42 QVLEVSGDKAVVQVFEGTTGLNLKGTKVRFTGETLELPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVARE 121 (460)
T ss_pred EEEEEECCEEEEEECCCCCCCCCCCCEEEECCCCEEEEECHHHHCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHHC
T ss_conf 99998699799999159888785997899479952887187772798477886368899888773412588998925526
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC--CCCCEEEEEECCCCHHHHHHHHHHH----
Q ss_conf 7865321368889988655102312220487787899999999998611--8864699995087878999999840----
Q gi|254780810|r 153 NNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN--HPECYLIVLLIDERPEEVTDMQRSV---- 226 (423)
Q Consensus 153 ~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~--~~~v~~i~~ligEr~~ev~e~~~~~---- 226 (423)
++.+|++||+|+||+|+|+|||||.+||+++|+|||+|+.+|+++...+ ..+..|||++||||++|+++|.+..
T Consensus 122 ~~~e~l~TGI~~ID~l~pl~rGQr~~If~gsGvgks~l~~~i~~qa~~~~~~~~~~vV~~~iGeR~~E~~e~~~~~~~~g 201 (460)
T PRK04196 122 YPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQIARQAKVLGSEEKFAVVFAAMGITFEEANFFMDEFEETG 201 (460)
T ss_pred CCCCEECCCCEEEECCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCEECHHHHHHHHHHHHCC
T ss_conf 88846137967961643322475765533899881169999999877505788815999732076068999999887448
Q ss_pred ---CCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCH
Q ss_conf ---3427823667888899999999999999999-77992899981638987762001366777677-752024665046
Q gi|254780810|r 227 ---QGEVISSTFDESAARHVQVAEMVIAKAKCLV-EYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPK 301 (423)
Q Consensus 227 ---~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~-e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~ 301 (423)
++.+|++|+|+||.+|.+++++++++||||+ |+|+|||++|||+||||+|+||++...||+|+ .|||+..++...
T Consensus 202 ~m~rtvlv~~ts~~p~~~R~~~~~~a~tiAEyfr~d~G~~VL~~~dd~tr~A~A~REis~~lge~P~~~GYP~~l~s~la 281 (460)
T PRK04196 202 ALERSVLFLNLADDPAIERILTPRMALTTAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLA 281 (460)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 63200475135889889988887666578999998569957999758078888766888754799987776862688868
Q ss_pred HHHHCCCCCC-CCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCC----
Q ss_conf 8752257777-77850012112012676554138898852266078980878847999740533542210155199----
Q gi|254780810|r 302 RFFGAARNIK-EGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVE---- 376 (423)
Q Consensus 302 ~~~~~ar~~~-~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~---- 376 (423)
+|+++|+.+. ..||+|++++|+++ |+|++|||++++++++||||+|||+||++|||||||++.|.||++...+.
T Consensus 282 ~l~ERAG~~~~~~GSIT~i~~V~~p-gdD~t~Pi~~~t~~i~dg~i~L~r~La~~g~yPaId~l~S~SR~~~~~ig~~~~ 360 (460)
T PRK04196 282 TLYERAGRIKGKKGSITQIPILTMP-EDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGKT 360 (460)
T ss_pred HHHHHCCCCCCCCCCEEEEEEEECC-CCCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCC
T ss_conf 8887235557898326999999767-987666467767644043899838999679988788765501102033565521
Q ss_pred -HHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf -999999999999961269378999999
Q gi|254780810|r 377 -RQDLQKVFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 377 -~~~~~~~~~~r~~l~~~~~~e~~~~l~ 403 (423)
++|.+.+..++..|++|++++++..++
T Consensus 361 ~~~h~~va~~~~~~la~~~el~~i~~lv 388 (460)
T PRK04196 361 REDHADVSNQLYAAYARGKDLRELAAIV 388 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6689999999999999788899999984
No 41
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=0 Score=510.22 Aligned_cols=264 Identities=20% Similarity=0.233 Sum_probs=245.6
Q ss_pred ECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 24688876300022225568878851244300020001122343247786532136888998865510231222048778
Q gi|254780810|r 106 APREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRT 185 (423)
Q Consensus 106 ~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~ 185 (423)
|+++|++..+||||.+..|+|+|+.++....+.++...+++.+..|.++.+|++||+|+||+|+|||||||.+|||++|+
T Consensus 1 Pl~ipVg~~lLGRVvd~~G~PiDg~~~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIr~ID~l~pigkGQR~~I~~~~g~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCC
T ss_conf 96577680421656368965248999999986042568996845607878731158666644466147857787579999
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999986118864699995087878999999840-------34278236678888999999999999999997
Q gi|254780810|r 186 GKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLVE 258 (423)
Q Consensus 186 gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e 258 (423)
|||+|+.++++++.++|.+ +||+++||||+|||+||++.. ++++|++|+|+||.+|++++++++++||||++
T Consensus 81 GKt~ll~~ii~~~~~~~~~-v~V~~~IGer~~ev~~~~~~~~~~~~l~~tvvv~~tad~~~~~r~~~~~~a~aiAE~frd 159 (274)
T cd01133 81 GKTVLIMELINNIAKAHGG-YSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRD 159 (274)
T ss_pred CCCHHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8236899999999850898-799998425548899999972035665337999834555405789999999999999997
Q ss_pred -CCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHH
Q ss_conf -7992899981638987762001366777677-75202466504687522577777785001211201267655413889
Q gi|254780810|r 259 -YGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFE 336 (423)
Q Consensus 259 -~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~ 336 (423)
+|+|||++||||||||+||||+++..||+|+ +||+++.++...+|.+++... ++||+|+++|++++ ++|+.|||++
T Consensus 160 ~~G~dVLll~DslTr~A~A~reis~~~g~~P~~~gyp~~l~~~~~~l~ER~~~~-~~GSiT~i~tv~~~-~dD~~dpi~~ 237 (274)
T cd01133 160 EEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITST-KKGSITSVQAVYVP-ADDLTDPAPA 237 (274)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCEEEEEEEECC-CCCCCCCHHH
T ss_conf 289859999718689999999888862899986666830788999999974488-89874688899745-8887661778
Q ss_pred HHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 885226607898087884799974053354221015
Q gi|254780810|r 337 EFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKED 372 (423)
Q Consensus 337 ~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~ 372 (423)
++++++||||+|||+||++|+|||||+++|+||+|+
T Consensus 238 ~~~~i~dG~ivLsr~la~~g~yPAIdv~~S~SR~m~ 273 (274)
T cd01133 238 TTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILD 273 (274)
T ss_pred HHHHHHCEEEEECHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 887740729998588996799996377653101258
No 42
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=0 Score=508.92 Aligned_cols=263 Identities=14% Similarity=0.143 Sum_probs=246.0
Q ss_pred CCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 46888763000222255688788512443000200011223432477865321368889988655102312220487787
Q gi|254780810|r 107 PREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTG 186 (423)
Q Consensus 107 ~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~g 186 (423)
.++|++..+||||.++.|+|+|++++....+..+...+++.+..|.++.+|++||+|+||+|+|||||||.+|||++|+|
T Consensus 2 l~VpVG~~lLGRVvd~lG~PiDg~~~i~~~~~~~i~~~ap~p~~R~~v~e~l~TGIkaID~l~pig~GQR~gIfgg~GvG 81 (276)
T cd01135 2 LKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGLP 81 (276)
T ss_pred EEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCC
T ss_conf 69874777337474588331279999999864024589978044067786322585354054672367663320578863
Q ss_pred HHHHHHHHHHHHH--HCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999986--118864699995087878999999840-------3427823667888899999999999999999
Q gi|254780810|r 187 KTILLQNIAHSIK--KNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLV 257 (423)
Q Consensus 187 kt~ll~~ia~~~~--~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~ 257 (423)
||+|+.||+++.. +....++||+++||||++||.+|++.. +++||++|+|+||.+|++++++|+++||||+
T Consensus 82 Ks~L~~~i~~~~~~~~~~~~~v~V~~~IGer~rev~e~~~~l~~~~~l~~tvvv~ata~~~p~~r~~a~~~a~aiAEyFr 161 (276)
T cd01135 82 HNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAEYLA 161 (276)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEECCEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 67899999998775136887359996155532579999999871665121014663488976888788888778999988
Q ss_pred -HCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCC-CCCCEEEEEEEECCCCCCCCHH
Q ss_conf -77992899981638987762001366777677-75202466504687522577777-7850012112012676554138
Q gi|254780810|r 258 -EYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKE-GGSLTIIGTALVDTGSRMDEVI 334 (423)
Q Consensus 258 -e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~-~Gs~T~~~t~lvetg~~~d~~i 334 (423)
++|||||++||||||||+||||++...||+|+ .||+|..++...++.++|++.++ +||||++++++++ ++|++|||
T Consensus 162 ~~~Gk~VLl~~D~ltr~A~A~REisl~~g~~P~~~gYp~~vf~~l~~l~ERag~~~~~~GSITa~~~v~~~-~dD~~~pi 240 (276)
T cd01135 162 YEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMP-NDDITHPI 240 (276)
T ss_pred HHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECC-CCCCCCCH
T ss_conf 73699779994568899999999998648999878888509988678887224679998018999899447-98867766
Q ss_pred HHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 898852266078980878847999740533542210
Q gi|254780810|r 335 FEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRK 370 (423)
Q Consensus 335 ~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~ 370 (423)
++++++++||||+|||+||++|||||||++.|.||+
T Consensus 241 ~~~~~si~DG~i~Lsr~la~~G~~PAId~~~S~SRv 276 (276)
T cd01135 241 PDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSRL 276 (276)
T ss_pred HHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCCC
T ss_conf 777765604599997999967999970875576679
No 43
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=0 Score=508.28 Aligned_cols=262 Identities=18% Similarity=0.201 Sum_probs=241.9
Q ss_pred CCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 46888763000222255688788512443000200011223432477865321368889988655102312220487787
Q gi|254780810|r 107 PREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTG 186 (423)
Q Consensus 107 ~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~g 186 (423)
.++|++..+||||.+..|+|+|+.++....+.++...+++.+..|..+.+|++||+|+||+|+|||||||.+|||++|+|
T Consensus 2 ~~VpVg~~lLGRVid~~G~PiDg~~~~~~~~~~pi~~~~p~p~~R~~i~e~l~TGI~aID~l~pig~GQr~~If~~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred EEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCCC
T ss_conf 68674746367375688330279999999850202588958521268786110383454134662478675155888755
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC-------CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999999861188646999950878789999998403-------42782366788889999999999999999977
Q gi|254780810|r 187 KTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQ-------GEVISSTFDESAARHVQVAEMVIAKAKCLVEY 259 (423)
Q Consensus 187 kt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~-------~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~ 259 (423)
||+|+.+++ ++++..+++||+++||||++||+||.+..+ +++|++|+|+||.+|++++++|+++||||+|+
T Consensus 82 Kt~l~~~~i--~~~~~~~~~~V~~~IGer~rEv~ef~~~~~~~~~l~~tv~v~~t~~~p~~~r~~a~~~a~~iAEyfrd~ 159 (274)
T cd01132 82 KTAIAIDTI--INQKGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDN 159 (274)
T ss_pred HHHHHHHHH--HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHC
T ss_conf 788999999--974136965999973245226999999876057620114774047787587776544122267899877
Q ss_pred CCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCC---CCCCCEEEEEEEECCCCCCCCHHH
Q ss_conf 992899981638987762001366777677-7520246650468752257777---778500121120126765541388
Q gi|254780810|r 260 GLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIK---EGGSLTIIGTALVDTGSRMDEVIF 335 (423)
Q Consensus 260 G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~---~~Gs~T~~~t~lvetg~~~d~~i~ 335 (423)
|||||++||||||||+||||++...||+|+ .||+++.++..++++++|++.. ++||+|++++++++ |+|++|||+
T Consensus 160 Gk~VLll~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~~~~l~ERag~~~~~~~~GSiT~~~~v~~~-~dD~t~pi~ 238 (274)
T cd01132 160 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQ-AGDVSAYIP 238 (274)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECC-CCCCCCCHH
T ss_conf 9947999978899999999999972799977777962787768999863215699988142177899735-877788516
Q ss_pred HHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 988522660789808788479997405335422101
Q gi|254780810|r 336 EEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKE 371 (423)
Q Consensus 336 ~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~ 371 (423)
+++++++||||+|||+||++|||||||+++|.||+.
T Consensus 239 d~~~~i~dg~ivLsr~la~~g~yPAIdvl~S~SRvg 274 (274)
T cd01132 239 TNVISITDGQIFLETDLFNKGIRPAINVGLSVSRVG 274 (274)
T ss_pred HHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 667222045999979999679999808775767789
No 44
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=499.47 Aligned_cols=395 Identities=20% Similarity=0.169 Sum_probs=341.9
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCC----CCCCCCCCEEECC
Q ss_conf 998999999998389885766678999999987520587489999985404770267504548----6666556046010
Q gi|254780810|r 12 KSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDAN----YLAGPDDIYVSPS 87 (423)
Q Consensus 12 ~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~----yl~~~~DiyVs~s 87 (423)
.+..|+.++.++ .|+++.... -+.+.++..+..+|++.+.|+-+++. |.+..+.++ .++.++|-+....
T Consensus 3 ~~~~ei~~~i~~-~i~~~~~~~---~~~~~g~V~sv~DgIa~v~Gl~~~~~---~E~~ef~~~v~G~alnle~d~VG~vi 75 (504)
T COG0056 3 LNPTEISSLIKQ-QIENFDVEA---EVKEVGTVISVGDGIARVSGLENVMA---GELVEFPGGVKGMALNLEEDSVGAVI 75 (504)
T ss_pred CCHHHHHHHHHH-HHHHCCHHH---HHHCCCEEEEEECCEEEEECCCHHHC---CCEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 867889999999-997125344---32116449997254699944743532---84599169937999850324246999
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 00012212598799988624688876300022225568878851244300020001122343247786532136888998
Q gi|254780810|r 88 QIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDL 167 (423)
Q Consensus 88 lir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~ 167 (423)
++...+|++||.|++|++...+|++..++|||++++|+|+|+++++......+.+.++|.++.|.++++|++||+++||+
T Consensus 76 ~g~~~~i~eG~~v~~Tg~i~~Vpvg~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDa 155 (504)
T COG0056 76 LGDYSDIKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDA 155 (504)
T ss_pred ECCCCCCCCCCEEEEECCEEEEECCHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHH
T ss_conf 66976645786788507568876356651405668898268989754233573302078503044238334420577764
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHH
Q ss_conf 86551023122204877878999999999986118864699995087878999999840-------34278236678888
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAA 240 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~ 240 (423)
|.|||||||.+|+|++++|||.++.+.+ +++.+.+++|||+.||++...|...++.+ ++.||++++++|+.
T Consensus 156 miPIGRGQRELIIGDRQTGKTaIAidtI--iNQk~~~v~CIYVAIGQK~stva~vv~tL~e~gAm~yTiVV~AsASd~a~ 233 (504)
T COG0056 156 LIPIGRGQRELIIGDRQTGKTAIAIDTI--INQKGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAP 233 (504)
T ss_pred HCCCCCCCEEEEECCCCCCCCHHHHHHH--HHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH
T ss_conf 0565788337875157678311027889--83556894799998154377899999999975975133999814776235
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCC-----CCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCC
Q ss_conf 99999999999999999779928999816389877620013-----6677767775202466504687522577777785
Q gi|254780810|r 241 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLM-----PSSGKILTGGVDANALQRPKRFFGAARNIKEGGS 315 (423)
Q Consensus 241 ~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~-----~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs 315 (423)
+++.+||.++++||||+++|+|||+++|+||++|.|||+++ ||+.|.++|++|.. +++.+++||+..++.|+
T Consensus 234 lqYLaPy~g~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYl---HSrLLERAakl~~e~g~ 310 (504)
T COG0056 234 LQYLAPYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYL---HSRLLERAAKLSDELGG 310 (504)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEH---HHHHHHHHHHHCCCCCC
T ss_conf 555302255588999986597489996074188999999999836999865788864001---17999998862024588
Q ss_pred CEEEEEEEECCCC-CCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 0012112012676-554138898852266078980878847999740533542210155199999999999999961269
Q gi|254780810|r 316 LTIIGTALVDTGS-RMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMN 394 (423)
Q Consensus 316 ~T~~~t~lvetg~-~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~ 394 (423)
.++.+.+++||.. |++.+|+.++.|+.||+|+|+.+|+++|+.||||+..|+||.....+.+...+.+..+|..|++|+
T Consensus 311 GSiTALPIIETqagDvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ~kamkkvag~lrl~laqYr 390 (504)
T COG0056 311 GSITALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQIKAMKKVAGSLRLILAQYR 390 (504)
T ss_pred CCEEEEEEEEECCCCEEEECCCCEEEECCCCEEEEHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 72475116886168662340354588407707850646646888532578426516518899999999878999999999
Q ss_pred CHHHHHHHH--------HHHHCCCCHHHHHHH
Q ss_conf 378999999--------984028998999986
Q gi|254780810|r 395 SSDAIEFLI--------DKLKQTKDNKDFFYS 418 (423)
Q Consensus 395 ~~e~~~~l~--------~~~~~~~~n~e~l~~ 418 (423)
+++++..+. +.|++.+.-.|+|+|
T Consensus 391 el~afsqf~sdLd~~T~~~l~~G~r~~ellkQ 422 (504)
T COG0056 391 ELEAFSQFGSDLDKATRKQLERGKRLTELLKQ 422 (504)
T ss_pred HHHHHHHHHHHHCHHHHHHHHCCHHHHHHHCC
T ss_conf 89998754002179899999713799999667
No 45
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=0 Score=495.59 Aligned_cols=368 Identities=17% Similarity=0.185 Sum_probs=315.2
Q ss_pred HHHHHCCCEEEEEEEEEEECCCCEEEEECCC------CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 8752058748999998540477026750454------8666655604601000012212598799988624688876300
Q gi|254780810|r 43 KVLSGRDVEIIGEGVIEVLQDGFGFLRSPDA------NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFAL 116 (423)
Q Consensus 43 ~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~------~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L 116 (423)
+..+..+|++.++|+-++.. |.+..+.+ -.++.++|.+....++...++++||.|..+++...+|++..+|
T Consensus 4 kV~sV~DgIa~V~GL~n~~~---~El~~f~~~~~v~g~~lnleed~vg~vi~g~~~~i~eGd~V~~Tg~i~~VpVG~~lL 80 (507)
T PRK07165 4 KIKSIFDYIVEVKGEFDYQQ---QQVFTLKNNPNVKLFVISATEDTAYLLINNEKAKIKIGDEIIELNNENKVLTSKEYF 80 (507)
T ss_pred EEEEEECEEEEEECCHHHCC---CCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCEEEEECCCCCC
T ss_conf 08998144899967702244---866996489962899972553617999987987704899998459857887576644
Q ss_pred EEECCCCCCCHHHHH-----CCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf 022225568878851-----244300020001122343247786532136888998865510231222048778789999
Q gi|254780810|r 117 LKVNAINFDVPERVR-----NKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILL 191 (423)
Q Consensus 117 ~rV~~vnG~~~d~~~-----~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll 191 (423)
|||++++|+|+|..+ ........+++.++|.++.|.++++|++||+++||+|.|||||||.+|+|++++|||+++
T Consensus 81 GRVVD~LG~pidp~~~~~~~~~~~~~~~pie~~Apgi~~R~~V~ePLqTGIkaID~miPIGRGQRELIiGDrqTGKTaIA 160 (507)
T PRK07165 81 GKIIDIDGNIIYPKAANPLKSEKAYQTSSAFNLAHGLMTVQTLNEQLYTGIVAIDLLIPIGKGQRELIIGDRQTGKTHIA 160 (507)
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 63688999867898988877654333477455799852367678613434678761355567616777357887788999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC-------CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999999861188646999950878789999998403-------4278236678888999999999999999997799289
Q gi|254780810|r 192 QNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQ-------GEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVV 264 (423)
Q Consensus 192 ~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~-------~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVl 264 (423)
.+.+ +++...+++|||+.||||.++|.++.+..+ +.||++++|.|+ .|+.+|+.++++|||| .+|+|||
T Consensus 161 ldtI--iNQk~~~V~cIYVAIGQK~s~Va~iv~~L~~~gAm~yTiVV~A~sd~p~-~qylAPy~g~aiAEyf-~~~~dvL 236 (507)
T PRK07165 161 LNTI--INQKNRNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPSTSSY-EQYLAPYVAMAHAENI-SYNDDVL 236 (507)
T ss_pred HHHH--HHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHEEEEECCCCCCH-HHHHHHHHHHHHHHHH-HCCCCEE
T ss_conf 9999--8454689589999831017799999999987797565257631577827-7777888888788988-6468569
Q ss_pred EEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCC
Q ss_conf 9981638987762001366777677-752024665046875225777777850012112012676554138898852266
Q gi|254780810|r 265 ILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGN 343 (423)
Q Consensus 265 l~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d 343 (423)
++||||||+|+|||++++..+|+|. .+||...||.-+++.++|....++||+|++..+-.. +.|++.+|++++.|++|
T Consensus 237 iiyDDLTkhA~AyReisLll~rPPGReayPgdvFy~hsrLLERa~kl~g~gSiTaLPIieT~-~gDisayIpTNviSITD 315 (507)
T PRK07165 237 IVFDDLTKHANIYREIALLTNKPVGKEAFPGDIFFAHSKLLERAGKFKNRKSITALPILQTV-DNDITSLISSNIISITD 315 (507)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC-CCCCCCCCCCCEEEECC
T ss_conf 99647689999999889872799997789960576616888887612699615760178702-78622435664477417
Q ss_pred CEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH--------HHHHHCCCCHHHH
Q ss_conf 07898087884799974053354221015519999999999999996126937899999--------9984028998999
Q gi|254780810|r 344 SEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFL--------IDKLKQTKDNKDF 415 (423)
Q Consensus 344 ~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l--------~~~~~~~~~n~e~ 415 (423)
|||+||++|+++|++||||+..|+||.....+.+...+.+..+|..+++|.+++++..+ .+.|.+.+.-.|+
T Consensus 316 GQI~l~~~Lf~~G~rPAInvglSVSRvG~~aQ~k~~k~vag~l~l~~aqy~el~~fa~f~sdld~~t~~~l~rG~r~~el 395 (507)
T PRK07165 316 GQIVTSSELFAQGKLPAIDIDLSVSRTGSSVQSKNIAKIAKEISKIYRAYKRQLKLSSLDYDLNKETSDLLSKGKMIEKL 395 (507)
T ss_pred CEEEECHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 62885176774698865235700651576888999999863656789999999999865454189999999732899998
Q ss_pred HHH
Q ss_conf 986
Q gi|254780810|r 416 FYS 418 (423)
Q Consensus 416 l~~ 418 (423)
|+|
T Consensus 396 lkQ 398 (507)
T PRK07165 396 FIQ 398 (507)
T ss_pred HCC
T ss_conf 667
No 46
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=0 Score=473.70 Aligned_cols=318 Identities=16% Similarity=0.100 Sum_probs=289.0
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
.......|.++.+.+....+|+.|+.|..++++++.+++..+||||.+..|+|+|+.+.... +.++...|+..+..|..
T Consensus 41 EVI~~~~d~v~iqvfe~T~Gi~~G~~V~~tG~~l~V~vg~~lLGRV~DglGrPiDggp~~~~-~~~~i~~~~inP~~R~~ 119 (432)
T PRK02118 41 SVLKLDGDKVTLQVFGGTSGISTGDEVVFLGRPMQVTFSDNLLGRRFNGTGKPIDGGPELEG-EPIEIGGPSVNPVKRIV 119 (432)
T ss_pred EEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCEEEECHHHCCCEECCCCCCCCCCCCCCC-CEEECCCCCCCCHHHCC
T ss_conf 99998199899998469878999999996899767882865437864476761589987889-88613699989642068
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
+.++++||+++||+|+|||+|||.+|||++|+|||+|+.+||++..++ ++++++||||.+|+.+|.+..
T Consensus 120 p~e~l~TGI~aID~l~~l~rGQKi~IFsgsG~gks~L~~~Ia~~a~~d----vvV~~~iGer~~e~~~f~~~~~~~~~l~ 195 (432)
T PRK02118 120 PREMIRTGIPMIDVFNTLVKSQKIPIFSSSGEPYNALLARIALQAEAD----IIILGGMGLTFDDYLFFKDEFEKAGALD 195 (432)
T ss_pred CCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC----EEEEECCEEECHHHHHHHHHHHHCCCCC
T ss_conf 876778896785423674058569874479997639999998853899----8964033244125899999875068777
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHH
Q ss_conf 3427823667888899999999999999999-77992899981638987762001366777677-752024665046875
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLV-EYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFF 304 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~-e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~ 304 (423)
++++|++|+|+||.+|++++++|+++||||+ |+|+|||+++||+||||+|+||++.+.||+|+ .|||+..+....+++
T Consensus 196 rtvlv~~ts~~p~~~R~~~~~~altiAEyfr~d~G~~VLli~DdlTr~A~A~REIs~~~ge~P~r~GYP~~l~s~La~l~ 275 (432)
T PRK02118 196 RTVMFVHTAVDPPVECLLVPDMALAVAEKFAVEEGKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLAKRY 275 (432)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 07998347778989987788888889999987459729999766788777887898754899987786953999999999
Q ss_pred HCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCC----HHHH
Q ss_conf 225777777850012112012676554138898852266078980878847999740533542210155199----9999
Q gi|254780810|r 305 GAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVE----RQDL 380 (423)
Q Consensus 305 ~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~----~~~~ 380 (423)
++|++..++||||++++++++ |||+.+||+|++++++||||||||+ +||++.|.||++....+ ++|.
T Consensus 276 ERAg~~~~~GSIT~i~~v~~p-~dD~t~Pi~d~t~~ItdGqIvLsr~--------~id~l~SlSRl~~~~ig~~tr~dh~ 346 (432)
T PRK02118 276 EKAVDFADGGSITIIAVTTMP-GDDITHPVPDNTGYITEGQFYLKRG--------RIDPFGSLSRLKQLVIGKKTREDHG 346 (432)
T ss_pred HHCCCCCCCEEEEEEEEEECC-CCCCCCCHHHHHHHHHCCEEEEECC--------CCCCCCCHHHHHHCCCCCCCHHHHH
T ss_conf 834689998026899999757-8777775688999985776885068--------7576443777765656542499999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999996126937899999998
Q gi|254780810|r 381 QKVFMLRRIVSSMNSSDAIEFLIDK 405 (423)
Q Consensus 381 ~~~~~~r~~l~~~~~~e~~~~l~~~ 405 (423)
..+..+.+.++.|.+.+++..+...
T Consensus 347 ~~~~~l~~~ya~~~~~~~~~~~~~~ 371 (432)
T PRK02118 347 DLMNAMIRLYADSRKAKEKMAMGFK 371 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999865579999999764
No 47
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=0 Score=466.00 Aligned_cols=273 Identities=19% Similarity=0.218 Sum_probs=233.0
Q ss_pred CCCCCCEEE-------EEEEECCCCCCCCCCEEECCCCC---------CCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 212598799-------98862468887630002222556---------88788512443000200011223432477865
Q gi|254780810|r 93 SLKTGDTVE-------GSIRAPREGERYFALLKVNAINF---------DVPERVRNKIHFDNLTPLYPDKRFNMELNNPE 156 (423)
Q Consensus 93 ~Lr~GD~V~-------g~~r~~~~~~~~~~L~rV~~vnG---------~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~ 156 (423)
.++.||.+. .+++++..|.....+.+|..... .+.++...-....+.||+..+..+..|.++++
T Consensus 60 ~V~~GDi~G~V~E~~~i~HkImvpp~~~G~v~~i~~~g~y~v~~~~~~~~~~g~~~~~~m~q~WPVr~prPv~er~~~~~ 139 (369)
T cd01134 60 HVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYIAPAGDYTVDDVILEVEFDGKKEEITMVQKWPVRQPRPVKEKLPPNE 139 (369)
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 96278679998557836777864898737999991589852465699970689846877887077566775111389998
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH-----------
Q ss_conf 321368889988655102312220487787899999999998611886469999508787899999984-----------
Q gi|254780810|r 157 NKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRS----------- 225 (423)
Q Consensus 157 p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~----------- 225 (423)
|++||+|+||.|+|||||||.+|||++|+|||+|+++|+++.+++ +|||++||||++||+||.+.
T Consensus 140 PL~TGir~ID~l~Pig~Gqr~~I~g~~g~GKT~l~~~i~k~~~~d----v~Vyv~iGeRg~ev~e~l~~f~el~~~~~g~ 215 (369)
T cd01134 140 PLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSNSD----IVIYVGCGERGNEMTEVLEEFPELTDPVTGE 215 (369)
T ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCC----EEEEEEEECCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 626535688742532147646776687768999999998537998----8999997114189999999867741333466
Q ss_pred ---HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCH
Q ss_conf ---0342782366788889999999999999999977992899981638987762001366777677-752024665046
Q gi|254780810|r 226 ---VQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPK 301 (423)
Q Consensus 226 ---~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~ 301 (423)
-++.+|++|+|+|+..|..++++++++|||||++|+||||++||+||||+||||+++..||+|+ .||++..+....
T Consensus 216 ~~~~rtvvVa~ts~~p~~~r~~s~y~g~tiAEyfRd~G~~Vll~~DslsR~A~A~REisl~l~e~P~~egYP~~l~s~l~ 295 (369)
T cd01134 216 PLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLA 295 (369)
T ss_pred CHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 41020368742777998899888989999999999689887998075899999988998863899876571931998888
Q ss_pred HHHHCCCCC------CCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 875225777------777850012112012676554138898852266078980878847999740533542210
Q gi|254780810|r 302 RFFGAARNI------KEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRK 370 (423)
Q Consensus 302 ~~~~~ar~~------~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~ 370 (423)
+|+++|+.+ ...||+|++++|+.+ |+|++|||++++++++|+||+|||+||++|||||||++.|.||.
T Consensus 296 ~l~ERag~~~~~~~~~~~GSiT~~~~V~~~-ggD~s~pI~~~~~si~d~~i~L~~~La~~g~~PAId~~~S~Sry 369 (369)
T cd01134 296 SFYERAGRVKCLGSPGREGSVTIVGAVSPP-GGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred HHHHHCCCCCCCCCCCCCCEEEEEEEEECC-CCCCCCCHHHHHHHHHCEEEEECHHHHHCCCCCCCCCCCCCCCC
T ss_conf 998721443236899998117789899756-98867757888876621588985889867999971874366588
No 48
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=100.00 E-value=0 Score=451.67 Aligned_cols=205 Identities=33% Similarity=0.464 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC-------CEEEE
Q ss_conf 36888998865510231222048778789999999999861188646999950878789999998403-------42782
Q gi|254780810|r 160 ISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQ-------GEVIS 232 (423)
Q Consensus 160 ~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~-------~~vv~ 232 (423)
||+|+||+|+|||||||.+|||++|+|||+|+.+|++++.+ +++||+++||||++||+||.+..+ ++||+
T Consensus 1 TGi~~ID~l~pig~GQr~~I~g~~g~GKt~l~~~i~~~~~~---~~~~V~~~iGer~~ev~~~~~~~~~~~~~~~t~vv~ 77 (213)
T pfam00006 1 TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAKA---DVVEVYVLIGERGREVAEFIEELLGEGALKRTVVVA 77 (213)
T ss_pred CCCCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---CCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 98400020166457888778789999889999999985661---893599813777799999999752137665069998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCC
Q ss_conf 366788889999999999999999977992899981638987762001366777677-7520246650468752257777
Q gi|254780810|r 233 STFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIK 311 (423)
Q Consensus 233 st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~ 311 (423)
+|+|+||.+|++++++++++||||+++|+|||+++||+||||+||||++...||+|+ +||++.+++.+++|+++|++++
T Consensus 78 ~~~d~~~~~r~~~~~~a~~~AEyf~~~G~dVlvi~Dsltr~A~A~reis~~~g~~p~~~gyp~~~~~~~~~l~ERag~~~ 157 (213)
T pfam00006 78 ATSDEPPAERYLAPYTALTIAEYFRDQGKDVLLLLDSLTRFARALREISLLLGEPPGREGYPGSLFSDLARLLERAGKVE 157 (213)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 46889878999999999999999997699689983780599999876500147998545639178888799998753468
Q ss_pred CCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCC
Q ss_conf 778500121120126765541388988522660789808788479997405335422
Q gi|254780810|r 312 EGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGT 368 (423)
Q Consensus 312 ~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~s 368 (423)
++||+|+++|+++++ +|++|||++++++++||||+|||+||++|+|||||+++|.|
T Consensus 158 ~~GSiT~l~tv~~~~-~d~~dpi~~~~~~~~dg~ivLsr~la~~g~~PAId~~~S~S 213 (213)
T pfam00006 158 GGGSITALPTVLVPG-GDITDPIPDNTISITDGQIVLSRELAERGIYPAIDILLSVS 213 (213)
T ss_pred CCCCEEEEEEEEECC-CCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCC
T ss_conf 886347888998048-88675156765211355999968999679999728755789
No 49
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=0 Score=433.24 Aligned_cols=322 Identities=17% Similarity=0.076 Sum_probs=280.1
Q ss_pred CCCCCCCC-EEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHH------HCCCCHHH-CCCCCCCC
Q ss_conf 66665560-460100001221259879998862468887630002222556887885------12443000-20001122
Q gi|254780810|r 75 YLAGPDDI-YVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERV------RNKIHFDN-LTPLYPDK 146 (423)
Q Consensus 75 yl~~~~Di-yVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~------~~~~~f~~-l~p~~p~~ 146 (423)
.+|.+.|- +....++...++.+||.|++|++...+|++..+||||++++|+|+|.. +.+..... .+.+.++|
T Consensus 82 alNLe~D~~VGvVllg~~~~I~eG~~V~rTG~il~vPVG~~~LGRVVdpLG~Pi~~~~~~~~r~~i~~~~~~~~iE~~AP 161 (574)
T PTZ00185 82 VFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAP 161 (574)
T ss_pred EECCCCCCCEEEEEECCCCCCCCCCEEEEECCEEEEECCCHHHCCEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 24135678134999668453247888875154788752700203222567897777643344443200110353236799
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH------CCCCCEEEEEECCCCHHHHH
Q ss_conf 343247786532136888998865510231222048778789999999999861------18864699995087878999
Q gi|254780810|r 147 RFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKK------NHPECYLIVLLIDERPEEVT 220 (423)
Q Consensus 147 ~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~------~~~~v~~i~~ligEr~~ev~ 220 (423)
.++.|.|+++|++||+++||.|.|||||||.+|++++++|||++..+.+.+... ...+++|||+.||++...|.
T Consensus 162 gI~~R~pV~ePl~TGikaIDamIPIGRGQRELIIGDRQTGKTaIAiDTIINQk~~n~~~~k~~~V~CIYVAIGQK~StVA 241 (574)
T PTZ00185 162 NIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVA 241 (574)
T ss_pred CCEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHH
T ss_conf 60105767845565567886436667885203555776556899999998376434465778966999998541289999
Q ss_pred HHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCC-----CCCCCCC
Q ss_conf 999840-------3427823667888899999999999999999779928999816389877620013-----6677767
Q gi|254780810|r 221 DMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLM-----PSSGKIL 288 (423)
Q Consensus 221 e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~-----~~~g~~~ 288 (423)
...+.+ .+.||++++++||..|+.+++.++++||||+++|+|||+++|+||++|.|||+.+ ||++|.+
T Consensus 242 ~iv~~L~e~gAm~yTiIVaAtAsd~a~lQYLAPYaG~AmaEyFm~~G~dvLIVyDDLSKhA~AYRqmSLLLRRPPGREAY 321 (574)
T PTZ00185 242 RIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAY 321 (574)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999997697203089992477751442321101257778988569847999658078899999987206899998798
Q ss_pred CCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCC-CCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCC
Q ss_conf 7752024665046875225777777850012112012676-554138898852266078980878847999740533542
Q gi|254780810|r 289 TGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGS-RMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSG 367 (423)
Q Consensus 289 ~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~-~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~ 367 (423)
+|++|.. +++.++++|+..++.|+.++.+.+++||.. |++.+|+.++.|+.||+|+|+.+|+++|++||||+..|+
T Consensus 322 PGDVFYl---HSRLLERAaKls~~~GgGSiTALPIIETqaGDvSAYIPTNVISITDGQIfLes~LF~~GiRPAInVGlSV 398 (574)
T PTZ00185 322 PGDVFYL---HSRLLERAAMLSPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSV 398 (574)
T ss_pred CCCEEEE---CHHHHHHHHHCCCCCCCEEEEECEEEEECCCCEEEEEECCEEEECCCEEEECHHHHHCCCCCCCCCCCCE
T ss_conf 8766111---0178888875244569800464206996078551010012587027718851767737988541468535
Q ss_pred CCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 21015519999999999999996126937899
Q gi|254780810|r 368 TRKEDLLVERQDLQKVFMLRRIVSSMNSSDAI 399 (423)
Q Consensus 368 sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~ 399 (423)
||.....+.+.+.+.+..+|..|++|+|+.+-
T Consensus 399 SRVGsaAQ~KAmK~VAG~Lkl~LAQYRElAA~ 430 (574)
T PTZ00185 399 SRVGSSAQNVAMKAVAGKLKGILAEYRKLAAD 430 (574)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 41676889999999741445889999998633
No 50
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=0 Score=434.04 Aligned_cols=324 Identities=19% Similarity=0.161 Sum_probs=278.4
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCC-----------CH-------
Q ss_conf 666655604601000012212598799988624688876300022225568878851244-----------30-------
Q gi|254780810|r 75 YLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKI-----------HF------- 136 (423)
Q Consensus 75 yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~-----------~f------- 136 (423)
......|..+.+.+....||+.||.|..++++++++.+..+|+||.|..|+|+|+..+.. +.
T Consensus 40 VI~i~gd~a~iQVyE~T~Gl~~G~~V~~TG~pLsV~LGpgLLGrIfDGiqrPLd~i~~~~g~fi~rG~~~~~Ldr~~~w~ 119 (585)
T PRK04192 40 IIRVRGDEASIQVYEETSGIKPGEPVEFTGEPLSVELGPGLLGSIYDGIQRPLDELAEKSGDFLKRGVYVPALDREKKWH 119 (585)
T ss_pred EEEEECCEEEEEECCCCCCCCCCCEEEECCCCEEEEECHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99994998999966688899998988847994498867625526247577863345543266544788788877444453
Q ss_pred ----------------------------------------------------------------------HHCCCCCCCC
Q ss_conf ----------------------------------------------------------------------0020001122
Q gi|254780810|r 137 ----------------------------------------------------------------------DNLTPLYPDK 146 (423)
Q Consensus 137 ----------------------------------------------------------------------~~l~p~~p~~ 146 (423)
-+.||++-+.
T Consensus 120 f~P~~~~Gd~v~~Gdilg~V~Et~~i~H~imvPp~~~g~v~~i~~~G~ytv~d~ia~v~~~~G~~~~~~m~q~WPVR~pr 199 (585)
T PRK04192 120 FKPTVKVGDKVVAGDVLGTVQETGSIEHKIMVPPGVSGTIKEIASEGDYTVDDTIAVVEDEDGKGKELTMMQKWPVRRPR 199 (585)
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 11113558741578657885046653341106988873389970588504301699986267874343311027666889
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH-
Q ss_conf 3432477865321368889988655102312220487787899999999998611886469999508787899999984-
Q gi|254780810|r 147 RFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRS- 225 (423)
Q Consensus 147 ~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~- 225 (423)
.+..|.++.+|+.||+|+||.|+||+|||+.+|+||+|+|||+++++||++.+++ ++|++++|||++|++||.+.
T Consensus 200 P~~~r~~p~~PL~TG~RvID~lfpi~rGgt~~IpGgfG~GKTvl~~~lak~s~aD----ivVyvgcGERgnEm~evl~eF 275 (585)
T PRK04192 200 PYKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQHQLAKWADAD----IVIYVGCGERGNEMTEVLEEF 275 (585)
T ss_pred CHHHCCCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCC----EEEEEEECCCHHHHHHHHHHH
T ss_conf 6233058665410373330023320268623212666666466799997426899----899997325408699999987
Q ss_pred -------------HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf -------------0342782366788889999999999999999977992899981638987762001366777677752
Q gi|254780810|r 226 -------------VQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGV 292 (423)
Q Consensus 226 -------------~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~ 292 (423)
-++++|++|+|+|+..|...+++++++||||||+|+||++++||+||||+|+||++...+|.|+...
T Consensus 276 pel~Dp~tG~~lm~RTVliaNTSnmPvaaReaSiytgiTiAEYfRDmG~~VllmaDStSRwAeAlREIS~rleE~Pg~eG 355 (585)
T PRK04192 276 PELKDPKTGRPLMERTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEG 355 (585)
T ss_pred HHHCCCCCCCHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 76037546701203089999999985788765156788899999976970899975668999998898786436985346
Q ss_pred CHHHH-HHCHHHHHCCCCCC----CCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCC
Q ss_conf 02466-50468752257777----77850012112012676554138898852266078980878847999740533542
Q gi|254780810|r 293 DANAL-QRPKRFFGAARNIK----EGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSG 367 (423)
Q Consensus 293 ~~~~l-~~~~~~~~~ar~~~----~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~ 367 (423)
+|++| .....|+++|+.++ ..||+|++.+|--+ |.|++||+.++.+.+...++.||++||++|||||||++.|.
T Consensus 356 YPaYL~SrLA~fYERAGrV~~~~~~~GSvT~igaVSpp-GgDfsePVT~~Tl~~v~~fw~Ld~~lA~~rhfPainwl~Sy 434 (585)
T PRK04192 356 YPAYLASRLAEFYERAGRVKTLGGSEGSVTIIGAVSPP-GGDFSEPVTQNTLRIVKVFWALDADLAYRRHYPAINWLTSY 434 (585)
T ss_pred CCCHHHHHHHHHHHHCCEEECCCCCCCCEEEEEEECCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 78238989999987424555058997627998886589-98867735788898887887513767755668866702436
Q ss_pred CCCHHHC-------CCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 2101551-------99999999999999961269378999999
Q gi|254780810|r 368 TRKEDLL-------VERQDLQKVFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 368 sR~~~~l-------~~~~~~~~~~~~r~~l~~~~~~e~~~~l~ 403 (423)
|+..+.+ ++++..+....++.+|...++++.+-.|+
T Consensus 435 S~y~~~~~~~~~~~~~~~~~~~r~~~~~iL~~e~~l~eiv~lv 477 (585)
T PRK04192 435 SLYLDDVADWWEENVSPDWRELRDEAMSLLQREAELQEIVRLV 477 (585)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7788889999987418159999999999987268999999864
No 51
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=398.61 Aligned_cols=321 Identities=18% Similarity=0.214 Sum_probs=289.0
Q ss_pred CCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCC--HHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6046010000122125987999886246888763000222255688788512443--00020001122343247786532
Q gi|254780810|r 81 DIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIH--FDNLTPLYPDKRFNMELNNPENK 158 (423)
Q Consensus 81 DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~--f~~l~p~~p~~~i~le~~~~~p~ 158 (423)
+.+=...+....+|..|+.|.-++.+-.+|++...|+||.+|.|.|+|+.++... +.++++..++|.+....+..+-+
T Consensus 52 ~~VR~Iam~~t~gl~rg~~v~dtg~pi~VPVG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIl 131 (468)
T COG0055 52 NVVRTIAMGSTDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEIL 131 (468)
T ss_pred CEEEEEEECCCCCCCCCCEEECCCCCEEEECCHHHCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCHHH
T ss_conf 83899996375671037477507996687526322123102047734666888755550201257998355407730443
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEE
Q ss_conf 13688899886551023122204877878999999999986118864699995087878999999840-------34278
Q gi|254780810|r 159 DISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVI 231 (423)
Q Consensus 159 ~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv 231 (423)
.||+++||+++|+-||.+.++|+++|+|||++++++++++++.|....++. -+|||.||-.|++... ++.+|
T Consensus 132 eTGIKVIDll~P~~kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFa-GvGERtREGndLy~Em~es~vl~ktalv 210 (468)
T COG0055 132 ETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFA-GVGERTREGNDLYHEMKESGVLDKTALV 210 (468)
T ss_pred HHCCEEEEEECCCCCCCEEEEECCCCCCCEEEHHHHHHHHHHHCCCEEEEE-ECCCCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf 307368998411146864444236775620109999999999749868997-1353211157789999863887732699
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCC
Q ss_conf 2366788889999999999999999977-992899981638987762001366777677-75202466504687522577
Q gi|254780810|r 232 SSTFDESAARHVQVAEMVIAKAKCLVEY-GLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARN 309 (423)
Q Consensus 232 ~st~d~~~~~~~~~a~~a~~~a~~~~e~-G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~ 309 (423)
.+.++|||..|.++|..++++||||||. |+|||+++|.|.||.+|..|++...||.|| .||.|..-.....+.++- .
T Consensus 211 ~gQMNEpPGaR~RValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERI-t 289 (468)
T COG0055 211 FGQMNEPPGARMRVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERI-T 289 (468)
T ss_pred EEECCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-H
T ss_conf 960579986414551123319998640038758998425567762313899984569641456740677888899997-5
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCC-CHHHCCCHHHHHHHHHHHH
Q ss_conf 777785001211201267655413889885226607898087884799974053354221-0155199999999999999
Q gi|254780810|r 310 IKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTR-KEDLLVERQDLQKVFMLRR 388 (423)
Q Consensus 310 ~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR-~~~~l~~~~~~~~~~~~r~ 388 (423)
+.+.||||.+.++.|+. ||..||-+-...+++|..++|||++|+.|||||||++.|.|| +.+.+++++|++.+..+++
T Consensus 290 stk~GSITSiQavyvPa-DDlTDPapattFaHLDat~vLsR~iaa~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~ 368 (468)
T COG0055 290 STKKGSITSVQAVYVPA-DDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQS 368 (468)
T ss_pred CCCCCCEEEEEEEEECC-CCCCCCCHHHHHHHCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 37888668899998613-23789525556551344135637678668876658443422015864145899999999999
Q ss_pred HHHCCCCHHHHHHHHH
Q ss_conf 9612693789999999
Q gi|254780810|r 389 IVSSMNSSDAIEFLID 404 (423)
Q Consensus 389 ~l~~~~~~e~~~~l~~ 404 (423)
.|.+|++++++..++.
T Consensus 369 iLqrYkeLqDIIaILG 384 (468)
T COG0055 369 ILQRYKELQDIIAILG 384 (468)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999899999999838
No 52
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit; InterPro: IPR005726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents the alpha subunit from the A1 complex of A-ATPases. The A1 complex contains three copies each of subunits alpha (or A) and beta (or B) (IPR005724 from INTERPRO), both of which form the headpiece that participates in nucleotide binding. However, only the alpha subunit is catalytic, the beta subunit being regulatory in function . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane, 0016469 proton-transporting two-sector ATPase complex.
Probab=100.00 E-value=1.4e-45 Score=318.29 Aligned_cols=354 Identities=20% Similarity=0.246 Sum_probs=278.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEE----EEEEE---EEEECCCCE--EE-EECCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 88576667899999998752058748----99999---854047702--67-5045486666556046010000122125
Q gi|254780810|r 27 ENANVMRKQELMFSILKVLSGRDVEI----IGEGV---IEVLQDGFG--FL-RSPDANYLAGPDDIYVSPSQIKSFSLKT 96 (423)
Q Consensus 27 e~~~~l~K~eLI~~Il~~~~~~~g~~----~~eGv---LEIl~dGyG--FL-R~~~~~yl~~~~DiyVs~slir~f~Lr~ 96 (423)
|.+++++..|-|...+..++..-|+- .-.|+ |+++.+..+ |+ |.....-++......-.|..-+-.....
T Consensus 52 E~T~G~~Pge~v~~tG~pLsveLGPGll~~iyDG~QRPL~~l~~~~~~~Fi~RGv~~p~l~~~~~w~F~P~v~~Gd~V~~ 131 (584)
T TIGR01043 52 EETSGIKPGEPVERTGAPLSVELGPGLLGSIYDGVQRPLDVLKEKTGSDFIERGVDAPGLDRDKKWEFKPTVKEGDKVEG 131 (584)
T ss_pred ECCCCCCCCCCHHCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCCEECCEECCCCEECC
T ss_conf 32688898740002897027743500476640122463689998620137665851688875345002221226864347
Q ss_pred CCEEE-------EEEEECCCCCCCC-CCEEE--------CCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 98799-------9886246888763-00022--------22556887885124430002000112234324778653213
Q gi|254780810|r 97 GDTVE-------GSIRAPREGERYF-ALLKV--------NAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDI 160 (423)
Q Consensus 97 GD~V~-------g~~r~~~~~~~~~-~L~rV--------~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~ 160 (423)
||.|- -.++++..|.-.. .+..| +.+--...+|...-....+.||++..+.......+..|+-+
T Consensus 132 Gd~~G~V~ET~~i~h~ilvPp~~~gg~~~~~~~G~ftV~d~i~~~~~~G~~~~~~m~~~WPVR~~RP~~~K~~P~~PL~t 211 (584)
T TIGR01043 132 GDIIGVVQETSLIEHKILVPPNVEGGEIVEIAEGDFTVEDTIAVVEKDGEEEEIKMYQKWPVRKPRPYKEKLEPEEPLVT 211 (584)
T ss_pred CCEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 61587763765033477735745787577872673146556899822788110246440778888874357888986121
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH--------------
Q ss_conf 688899886551023122204877878999999999986118864699995087878999999840--------------
Q gi|254780810|r 161 SSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------------- 226 (423)
Q Consensus 161 ~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------------- 226 (423)
|.|++|.|+|+.||..+.|.||.|+|||+.++++|++.+++ ++||+-+||||.|.||..+.-
T Consensus 212 G~R~~Dt~F~~AKGGTAAiPGPFGsGKTVT~~~LAkws~a~----ivvYiGCGERGNEMt~vl~~FP~l~dp~TG~pLm~ 287 (584)
T TIGR01043 212 GQRILDTLFPIAKGGTAAIPGPFGSGKTVTQQQLAKWSDAD----IVVYIGCGERGNEMTEVLEEFPELEDPKTGKPLME 287 (584)
T ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----EEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 50341010242467754578788885046777775430473----79996168875258999984878688635315654
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHCHHHHH
Q ss_conf 34278236678888999999999999999997799289998163898776200136677767775202466-50468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANAL-QRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l-~~~~~~~~ 305 (423)
+++.||+|++.|...|-...|.++++||||||+|.||+|+.||.+|||-|.|+++....|.|....+|++| .+...|++
T Consensus 288 RT~LiANTSNMPVAAREas~Y~GiTiAEYfRD~GYdv~L~ADSTSRWAEA~ReisgRlEEMPgEEGyPaYLasrLaefYE 367 (584)
T TIGR01043 288 RTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYE 367 (584)
T ss_pred CCEEEECCCCCCHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 20533526787534401123211025334411685168872475217899987520210277878862468888877665
Q ss_pred CCCCCC------CCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCC--H
Q ss_conf 257777------77850012112012676554138898852266078980878847999740533542210155199--9
Q gi|254780810|r 306 AARNIK------EGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVE--R 377 (423)
Q Consensus 306 ~ar~~~------~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~--~ 377 (423)
+|+.+. ..||+|++..|==+ |.|++||+.++..-+...++-||.+||++|||||||++.|-|-..+.+.. .
T Consensus 368 RAG~~~~l~~~~~~gsv~v~gAVSPP-GGDfsEPVt~~TlR~vkvFWaLD~~La~~RHfPaInW~~sySlY~d~~~~W~~ 446 (584)
T TIGR01043 368 RAGRVKTLGGEEREGSVTVVGAVSPP-GGDFSEPVTQNTLRIVKVFWALDAKLAQRRHFPAINWLQSYSLYVDSVQDWWA 446 (584)
T ss_pred HCCEEEECCCCCCEEEEEEEECCCCC-CCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 14602231688744789999614775-57878862227447898730011788743789730201145776888999987
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780810|r 378 QDLQKVFM 385 (423)
Q Consensus 378 ~~~~~~~~ 385 (423)
++...-|.
T Consensus 447 ~Nv~~~w~ 454 (584)
T TIGR01043 447 ENVDPDWR 454 (584)
T ss_pred HHHHHHHH
T ss_conf 40027799
No 53
>KOG1350 consensus
Probab=100.00 E-value=0 Score=322.09 Aligned_cols=319 Identities=18% Similarity=0.177 Sum_probs=276.6
Q ss_pred CEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 04601000012212598799988624688876300022225568878851244300020001122343247786532136
Q gi|254780810|r 82 IYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDIS 161 (423)
Q Consensus 82 iyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~ 161 (423)
.+-...+...-+|++|..|.-++-|.+.|++...||||.+|.|.|+|+.+++.....-++...+|.+..-....+-+.||
T Consensus 99 ~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipVG~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TG 178 (521)
T KOG1350 99 TVRTIAMDGTEGLVRGQKVLDTGYPISIPVGPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTG 178 (521)
T ss_pred EEEEEEECCCHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHC
T ss_conf 27899843731122385202479963563178887668874178554458855333564224770676514317887624
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------------CC
Q ss_conf 88899886551023122204877878999999999986118864699995087878999999840-------------34
Q gi|254780810|r 162 SRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------------QG 228 (423)
Q Consensus 162 ~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------------~~ 228 (423)
++++|+++|..||.+.++|+++|+|||+++..+++++.+.|-...++. -+|||.||-.|.++.. +.
T Consensus 179 IKVvDLLAPYakGGKIGLFGGAGVGKTVlImELINNiAKaHGGySVF~-GvGERTREGNDLY~EM~E~gVI~l~~~~SKv 257 (521)
T KOG1350 179 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFA-GVGERTREGNDLYHEMIESGVINLEGETSKV 257 (521)
T ss_pred CEEEEEECCCCCCCEEEEECCCCCCCEEEHHHHHHHHHHHCCCEEEEE-CCCCCCCCCCHHHHHHHHCCEEECCCCCCEE
T ss_conf 343442132024873444225776613329999878888628867863-1453334430789999863812125776337
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHCHHHHHC
Q ss_conf 278236678888999999999999999997-79928999816389877620013667776777-5202466504687522
Q gi|254780810|r 229 EVISSTFDESAARHVQVAEMVIAKAKCLVE-YGLDVVILLDSITRLCRAYNVLMPSSGKILTG-GVDANALQRPKRFFGA 306 (423)
Q Consensus 229 ~vv~st~d~~~~~~~~~a~~a~~~a~~~~e-~G~dVll~~DslTR~ArA~~~~~~~~g~~~~g-g~~~~~l~~~~~~~~~ 306 (423)
..|...+++||..|.+++..+++.|||||| .|+|||+++|.|.||.+|..|++.-.||.||. ||.|..-.-.-...++
T Consensus 258 aLV~GQMNePPGARaRV~LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQER 337 (521)
T KOG1350 258 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQER 337 (521)
T ss_pred EEEEECCCCCCCCEEEEEEECCCHHHHHHCCCCCEEEEEEHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 89862157998730145431115999863446666898612346663152489998635841025676320111356676
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCC-CHHHCCCHHHHHHHHH
Q ss_conf 577777785001211201267655413889885226607898087884799974053354221-0155199999999999
Q gi|254780810|r 307 ARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTR-KEDLLVERQDLQKVFM 385 (423)
Q Consensus 307 ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR-~~~~l~~~~~~~~~~~ 385 (423)
- ...+.||+|.+..+.|+. ||..||-+....+++|..-||||.+|+.|||||+|++-|.|| .+..++.++|+..++.
T Consensus 338 I-TtTkkGSiTSvQAvYVPA-DDLtDPaPattFaHLDAttVLSR~iaelgIYPAVDPLDStSrimdp~ivG~eHY~vA~~ 415 (521)
T KOG1350 338 I-TTTKKGSITSVQAVYVPA-DDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVGEEHYNVARG 415 (521)
T ss_pred H-HCCCCCCEEEEEEEEEEH-HCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 3-004567556788998510-10589875420000332345433367607766658766534236844145677789999
Q ss_pred HHHHHHCCCCHHHHHHHH
Q ss_conf 999961269378999999
Q gi|254780810|r 386 LRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 386 ~r~~l~~~~~~e~~~~l~ 403 (423)
+.+.|..|+.+++...++
T Consensus 416 Vqk~LQ~YKsLQDIIAIL 433 (521)
T KOG1350 416 VQKTLQDYKSLQDIIAIL 433 (521)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999888898899995
No 54
>TIGR01039 atpD ATP synthase F1, beta subunit; InterPro: IPR005722 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the beta subunit found in the F1 complex of F-ATPases. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself is driven by the movement of protons through the F0 complex C subunit , . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0008553 hydrogen-exporting ATPase activity phosphorylative mechanism, 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0006754 ATP biosynthetic process, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane.
Probab=100.00 E-value=1.3e-42 Score=299.49 Aligned_cols=321 Identities=19% Similarity=0.216 Sum_probs=288.5
Q ss_pred CCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 60460100001221259879998862468887630002222556887885124430002000112234324778653213
Q gi|254780810|r 81 DIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDI 160 (423)
Q Consensus 81 DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~ 160 (423)
+.+-...+....+|.+|..|.-...+..+|++...+|||.++.|.++|...........+....+|.+.......+-+.+
T Consensus 48 ~~vr~ia~~~~~Gl~r~~~~~~~~~~i~vPvG~~~~G~~~nv~G~~~d~~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~t 127 (460)
T TIGR01039 48 DTVRAIALDSTDGLVRGLEVVDTGKPIEVPVGKEVLGRIFNVLGEPIDEKGEVKKKEKLPIHRKAPSFEEQSTKVEILET 127 (460)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 60567873143330221355543872551147404557876621000341110023420122068513443346789873
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC--------CEEEE
Q ss_conf 6888998865510231222048778789999999999861188646999950878789999998403--------42782
Q gi|254780810|r 161 SSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQ--------GEVIS 232 (423)
Q Consensus 161 ~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~--------~~vv~ 232 (423)
|+++||+++|.-+|.+.++|+++|+|||+++.+++++++.+|....++. -+|||.||-.|++.... ..++.
T Consensus 128 G~kv~dll~P~~~GGk~glfGGaGvGktv~~~eli~~~a~~~~G~sv~~-GvGertreGndly~e~~~~~v~~~~~~lv~ 206 (460)
T TIGR01039 128 GIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGLSVFA-GVGERTREGNDLYLEMKESGVINSKVALVY 206 (460)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEE-ECCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 3688877515432880677317662245668999999998628807985-066533325689999873241012326887
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHCHHHHHCCCCC
Q ss_conf 36678888999999999999999997-79928999816389877620013667776777-52024665046875225777
Q gi|254780810|r 233 STFDESAARHVQVAEMVIAKAKCLVE-YGLDVVILLDSITRLCRAYNVLMPSSGKILTG-GVDANALQRPKRFFGAARNI 310 (423)
Q Consensus 233 st~d~~~~~~~~~a~~a~~~a~~~~e-~G~dVll~~DslTR~ArA~~~~~~~~g~~~~g-g~~~~~l~~~~~~~~~ar~~ 310 (423)
..+++||..|.++|..+++.||+|+| +++|||+++|++.||.+|..+++.-.||.||. ||.|..-...-.+.++-- .
T Consensus 207 Gqm~ePPG~r~rva~~~lt~ae~frd~~~~dvl~f~dnifrf~~aG~e~s~llGr~PsavGyqPtl~~~~G~lqeri~-s 285 (460)
T TIGR01039 207 GQMNEPPGARLRVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRLPSAVGYQPTLATEMGELQERIT-S 285 (460)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHH-H
T ss_conf 213689874110345677888875112466378851446777631047898861011000566303566767877765-2
Q ss_pred CCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCC-CHHHCCCHHHHHHHHHHHHH
Q ss_conf 77785001211201267655413889885226607898087884799974053354221-01551999999999999999
Q gi|254780810|r 311 KEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTR-KEDLLVERQDLQKVFMLRRI 389 (423)
Q Consensus 311 ~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR-~~~~l~~~~~~~~~~~~r~~ 389 (423)
.+.||+|.+..+.++. ||+.||-+.....++|...+|+|.+++.|+|||||++.|.|| +...+++++|++.+..++..
T Consensus 286 t~~~s~ts~qa~yvPa-dd~tdPaP~~~fahlda~~~l~r~~~~~GiyPav~Pl~s~s~~l~~~~vG~~hy~~a~~v~~~ 364 (460)
T TIGR01039 286 TKKGSITSVQAVYVPA-DDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPEVVGEEHYEVAREVQSI 364 (460)
T ss_pred CCCCCEEEEEEEEECC-CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1355325676786332-025788630344440002454566875177655465101344430565216789999999999
Q ss_pred HHCCCCHHHHHHHHH
Q ss_conf 612693789999999
Q gi|254780810|r 390 VSSMNSSDAIEFLID 404 (423)
Q Consensus 390 l~~~~~~e~~~~l~~ 404 (423)
|..|++++....++.
T Consensus 365 lq~y~~l~diiailG 379 (460)
T TIGR01039 365 LQRYKELQDIIAILG 379 (460)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 998887888988843
No 55
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=4.9e-43 Score=302.32 Aligned_cols=262 Identities=19% Similarity=0.227 Sum_probs=223.1
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 43000200011223432477865321368889988655102312220487787899999999998611886469999508
Q gi|254780810|r 134 IHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLID 213 (423)
Q Consensus 134 ~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~lig 213 (423)
..-.+.||++.+.......++.+|+.||.|+||.|+|+.||....|.+|.|+|||++.+++|++.++| +++|+.+|
T Consensus 184 ~~m~~~WPVR~~rp~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsGKTV~qh~laK~sdad----iVVyigCG 259 (588)
T COG1155 184 VQMMTTWPVRKARPVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKTVSQHTLSKLADGD----IVIYVGCG 259 (588)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCC----EEEEEECC
T ss_conf 88887266467764102489877521254231010211157651266888898375243565640688----89998157
Q ss_pred CCHHHHHHHHHHH--------------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHC
Q ss_conf 7878999999840--------------34278236678888999999999999999997799289998163898776200
Q gi|254780810|r 214 ERPEEVTDMQRSV--------------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNV 279 (423)
Q Consensus 214 Er~~ev~e~~~~~--------------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~ 279 (423)
||+.|+||....- ++..+++|+++|...|...-|+++++||||||+|.||+++-||.+|||.|.|+
T Consensus 260 ERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAEAlRE 339 (588)
T COG1155 260 ERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALRE 339 (588)
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 76523899998686666899997120003676257666188866435322319998876302567750138999999998
Q ss_pred CCCCCCCCCCCCCCHHHH-HHCHHHHHCCCCCCC--C----CCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHH
Q ss_conf 136677767775202466-504687522577777--7----850012112012676554138898852266078980878
Q gi|254780810|r 280 LMPSSGKILTGGVDANAL-QRPKRFFGAARNIKE--G----GSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKI 352 (423)
Q Consensus 280 ~~~~~g~~~~gg~~~~~l-~~~~~~~~~ar~~~~--~----Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~l 352 (423)
++...+|.|...++|++| .....|+++|+.+.. + ||+|++..| .+-|.|++||+.++.+.+....+-||++|
T Consensus 340 isgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~gaV-SPpGGdfSEPVtq~Tlriv~vFw~Ld~~l 418 (588)
T COG1155 340 ISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAV-SPPGGDFSEPVTQNTLRVVRVFWALDAAL 418 (588)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEECCC-CCCCCCCCCCCCHHEEEEEEEECCCCHHH
T ss_conf 73350028864444167899999999854723422788625899982577-89999847652110035566420014445
Q ss_pred HHCCCCCCCCCCCCCCCCHHHC-------CCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 8479997405335422101551-------99999999999999961269378999
Q gi|254780810|r 353 ADKRIFPAMDIIKSGTRKEDLL-------VERQDLQKVFMLRRIVSSMNSSDAIE 400 (423)
Q Consensus 353 a~~~~~PAId~~~S~sR~~~~l-------~~~~~~~~~~~~r~~l~~~~~~e~~~ 400 (423)
|++|||||||++.|.|.+-+.+ ++++-.++...+++.|..-.+++-+-
T Consensus 419 a~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqeiv 473 (588)
T COG1155 419 ANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQEIV 473 (588)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3232376567377799989888877640258238999999999988779999999
No 56
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=1.9e-38 Score=272.18 Aligned_cols=336 Identities=16% Similarity=0.101 Sum_probs=280.2
Q ss_pred CEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCE-EEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCC
Q ss_conf 02675045486666556046010000122125987-99988624688876300022225568878851244300020001
Q gi|254780810|r 65 FGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDT-VEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLY 143 (423)
Q Consensus 65 yGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~-V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~ 143 (423)
.|-.|. ...+....|..+.+.+....+|..++. |..++++++.+++..+||||.+..|.|+|+.+.+.+.+.+.+.-
T Consensus 38 ~G~~r~--gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~vs~dllGRifnG~G~PiDggp~i~~e~~~dI~g 115 (463)
T COG1156 38 DGEVRR--GQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPVSEDLLGRIFNGSGKPIDGGPEIVPEDRLDING 115 (463)
T ss_pred CCCEEE--EEEEECCCCEEEEEEEECCCCCCCCCCEEEEECCEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 987643--457531586489999504457788885589948637876328766544057888478998678775533578
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-CC-EEEEEECCCCHHHHHH
Q ss_conf 122343247786532136888998865510231222048778789999999999861188-64-6999950878789999
Q gi|254780810|r 144 PDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHP-EC-YLIVLLIDERPEEVTD 221 (423)
Q Consensus 144 p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~-~v-~~i~~ligEr~~ev~e 221 (423)
++-.+..|.-+.++.+||+.+||.|.++.+||+..||+++|..+..|+-+||+....... +- -++....|-.-+|..-
T Consensus 116 ~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~LaaqIarQA~v~~~~e~favVfaamGit~eea~f 195 (463)
T COG1156 116 APINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQATVDGEEEEFAVVFAAMGITHEEALF 195 (463)
T ss_pred CCCCCHHHHCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHH
T ss_conf 87891565472667652960876434653365466012799843799999997536678754305887404731899999
Q ss_pred HHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99840-------3427823667888899999999999999999-779928999816389877620013667776777520
Q gi|254780810|r 222 MQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLV-EYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVD 293 (423)
Q Consensus 222 ~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~-e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~ 293 (423)
|.+.- +++++.+.+|+|+..++..+.+|++.||||. |+++|||+++.++|-||-|.|+++.+..+.|..-..
T Consensus 196 F~~~fe~tGal~r~vlflnlA~dp~vEri~tPr~aLt~AEylA~e~~~hVLVilTDMTnyceALREIsaareeVPgrRGY 275 (463)
T COG1156 196 FMDEFEETGALDRAVLFLNLADDPAVERIITPRMALTVAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGY 275 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99888762246666765423678743476131689999999852578669999701467899999987641437776788
Q ss_pred HHHHHH-CHHHHHCCCCCCC-CCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 246650-4687522577777-78500121120126765541388988522660789808788479997405335422101
Q gi|254780810|r 294 ANALQR-PKRFFGAARNIKE-GGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKE 371 (423)
Q Consensus 294 ~~~l~~-~~~~~~~ar~~~~-~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~ 371 (423)
|.++|. ...++++|+++++ +||+|-+.-.-.+ +||...||+|..-=+.-|+|||+|++-.+||||.||++-|.||++
T Consensus 276 PGymYTdLatiYErAg~i~g~~GSiTqipIlTMP-~DDITHPIPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~ 354 (463)
T COG1156 276 PGYMYTDLATIYERAGRIRGRKGSITQIPILTMP-GDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLM 354 (463)
T ss_pred CCHHHHHHHHHHHHHCEECCCCCCEEEEEEEECC-CCCCCCCCCCCCCEECCCEEEEEHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 6166778899987650330578726987765269-987678777655533165599971002488679723361277776
Q ss_pred HHCCC-----HHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 55199-----999999999999961269378999999
Q gi|254780810|r 372 DLLVE-----RQDLQKVFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 372 ~~l~~-----~~~~~~~~~~r~~l~~~~~~e~~~~l~ 403 (423)
....+ ++|...+.++-+..+...++..+-...
T Consensus 355 ~~giG~g~TReDH~~~snql~a~YA~g~d~r~l~avv 391 (463)
T COG1156 355 KDGIGEGKTREDHGDVSNQLYAAYAEGRDLRELVAVV 391 (463)
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 5144788664410788999999985024089999875
No 57
>KOG1352 consensus
Probab=100.00 E-value=2.6e-34 Score=244.92 Aligned_cols=274 Identities=17% Similarity=0.210 Sum_probs=223.3
Q ss_pred CCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 88788512443000200011223432477865321368889988655102312220487787899999999998611886
Q gi|254780810|r 125 DVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPE 204 (423)
Q Consensus 125 ~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~ 204 (423)
...++.+.--..-+-||++.++.+....+.+.|+-+|.|++|.++|+..|....|.+..|+|||++-+.+.++.+.+
T Consensus 196 ~Ef~g~k~~~tmlq~WPVR~pRPv~ekl~an~PLltGQRvLDalfPcVqGGTtaIPGAFGCGKTVISQsLSKYSNSD--- 272 (618)
T KOG1352 196 LEFDGEKTKFTMLQTWPVRQPRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSD--- 272 (618)
T ss_pred EEECCCCEEEEEEEECCCCCCCCHHHCCCCCCCCCCCCHHHHHHCCHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCC---
T ss_conf 87368411577898614577764111167899641330688754421238861167645655477777775405787---
Q ss_pred CEEEEEECCCCHHHHHHHHHHH----------------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 4699995087878999999840----------------342782366788889999999999999999977992899981
Q gi|254780810|r 205 CYLIVLLIDERPEEVTDMQRSV----------------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLD 268 (423)
Q Consensus 205 v~~i~~ligEr~~ev~e~~~~~----------------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~D 268 (423)
.+||+-.|||+.|..|..+.- ++..|++|++.|...|-...+.+++.+|||||+|+||-.+.|
T Consensus 273 -~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPVAAREASIYTGITlsEYfRDmG~nVsMmAD 351 (618)
T KOG1352 273 -AIIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMAD 351 (618)
T ss_pred -EEEEECCCCCCHHHHHHHHHCHHHEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCEEHHHHHHHCCCCEEEEEC
T ss_conf -6999736665215899987371228634884214554412210478885044320233150699999862764455415
Q ss_pred CHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHCHHHHHCCCCC------CCCCCCEEEEEEEECCCCCCCCHHHHHHHHC
Q ss_conf 6389877620013667776777-52024665046875225777------7778500121120126765541388988522
Q gi|254780810|r 269 SITRLCRAYNVLMPSSGKILTG-GVDANALQRPKRFFGAARNI------KEGGSLTIIGTALVDTGSRMDEVIFEEFKGT 341 (423)
Q Consensus 269 slTR~ArA~~~~~~~~g~~~~g-g~~~~~l~~~~~~~~~ar~~------~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~ 341 (423)
|.+|||.|.||++...+|.|.- |||+-.-.+...|+++|+.. +..||.|+...|--+ |.|++||+.....|+
T Consensus 352 StSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGsP~ReGsVsIVgAVSPp-GGDFsDPVTsATLgI 430 (618)
T KOG1352 352 STSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPDREGSVSIVGAVSPP-GGDFSDPVTSATLGI 430 (618)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEEECCC-CCCCCCCCHHHHHHE
T ss_conf 4468999999863056418676797278888999999864702543798767606999862699-988677300211200
Q ss_pred CCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCC------HHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 66078980878847999740533542210155199------999999999999961269378999999
Q gi|254780810|r 342 GNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVE------RQDLQKVFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 342 ~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~------~~~~~~~~~~r~~l~~~~~~e~~~~l~ 403 (423)
..-.+-||.+||++-|||.||++.|-|..+..|-+ ++-...-.+.|..|+.-+++...-.|.
T Consensus 431 vQVFWGLDKKLAQRKHFPSiNwliSYSkY~~aL~~~Ye~~~peF~~lRtk~keilq~eedl~eivQLV 498 (618)
T KOG1352 431 VQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDPFYEKNYPEFVVLRTKAKEILQEEEDLSEIVQLV 498 (618)
T ss_pred EEEHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10001024777753038862034518999987777787428876406889999975355699999985
No 58
>KOG1353 consensus
Probab=99.97 E-value=1.1e-32 Score=234.16 Aligned_cols=271 Identities=18% Similarity=0.139 Sum_probs=236.1
Q ss_pred HHHHHHHHHHCCCEEEEEEEEEEECCCC-EEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 9999987520587489999985404770-267504548666655604601000012212598799988624688876300
Q gi|254780810|r 38 MFSILKVLSGRDVEIIGEGVIEVLQDGF-GFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFAL 116 (423)
Q Consensus 38 I~~Il~~~~~~~g~~~~eGvLEIl~dGy-GFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L 116 (423)
+.+.+++.+..+|+.++.|+-+|..+.. -|--....-.++.+.|.++...+++..-+|+|+.|++++....+|...++|
T Consensus 18 leEtg~VLsIGdGIArV~GL~nvQAeE~vEFssGlKgmalnle~~~vg~v~~g~d~~ikeg~~VkrTgaIvDVpvg~~Ll 97 (340)
T KOG1353 18 LEETGRVLSIGDGIARVYGLTNVQAEEMVEFSSGLKGMALNLEGENVGVVVFGEDSLIKEGDTVKRTAAISDVPPLKALL 97 (340)
T ss_pred HHHCCCEEEECCCEEEEECCCCCCHHHHHHHHCCCCCHHCCCCCCCEEEEEECCCCEECCCCEEEEEEEEECCCCHHHHH
T ss_conf 44436367874734022153300367788563243210025667715899975740221475589666651267167775
Q ss_pred EEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 02222556887885124430002000112234324778653213688899886551023122204877878999999999
Q gi|254780810|r 117 LKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 117 ~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
+||.+..|+|+|+++++...++. +.-|..+.+|+++|.+++|.+.|||||||.+|+++..+|||.|..+.+.
T Consensus 98 grvvdAlGn~idgkG~i~~~~~~--------ii~r~sv~epmqtg~KAvdslVpigRgqrELiIgdRqTGkTsla~dTI~ 169 (340)
T KOG1353 98 GRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTSLAIDTIL 169 (340)
T ss_pred HHHHHHHCCEECCCCCCCCCCCC--------CCCCEEEECHHHHHHHHHHCEEEECCCCEEEEECCCCCCCEEEEEHHHH
T ss_conf 22045306743588875632123--------2453124052366666866021033585678731566685454104444
Q ss_pred HHHHCCC------CCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 9861188------64699995087878999999840-------3427823667888899999999999999999779928
Q gi|254780810|r 197 SIKKNHP------ECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDV 263 (423)
Q Consensus 197 ~~~~~~~------~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dV 263 (423)
++..-|. ..+|+|+.||++...|......+ ++.||++|++
T Consensus 170 nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~a~~y~ivv~atas--------------------------- 222 (340)
T KOG1353 170 NQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEEADAMEYSIVVAATAS--------------------------- 222 (340)
T ss_pred HHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEECC---------------------------
T ss_conf 54641234343350799999606104089999988875587227999985013---------------------------
Q ss_pred EEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCC
Q ss_conf 99981638987762001366777677752024665046875225777777850012112012676554138898852266
Q gi|254780810|r 264 VILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGN 343 (423)
Q Consensus 264 ll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d 343 (423)
. +.|.+.+|+.++.++ |
T Consensus 223 -------------------------------------------------------------q-~gdvsayiptnvisi-d 239 (340)
T KOG1353 223 -------------------------------------------------------------Q-AGDVSAYIPTNVISI-D 239 (340)
T ss_pred -------------------------------------------------------------C-CCCEEEECCCCEEEE-C
T ss_conf -------------------------------------------------------------5-666246625432455-3
Q ss_pred CEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 078980878847999740533542210155199999999999999961269378999999984
Q gi|254780810|r 344 SEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKL 406 (423)
Q Consensus 344 ~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~ 406 (423)
|+|.|+.+|+++|+.||||+..|+||+..+...+.+.+.+..++..|++|.|++++-.+-..|
T Consensus 240 gqi~l~t~lfy~girpainvg~svsrvgsaaq~kamkqvag~~klelaq~revaafaqfgsdl 302 (340)
T KOG1353 240 GQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSLKLELAQYREVAAFAQFGSDL 302 (340)
T ss_pred CHHHHHHHHHHHCCCHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 256777888771563342420574411546778899987304223787788899998743530
No 59
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit; InterPro: IPR005724 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents the beta subunit from the A1 complex of A-ATPases. The A1 complex contains three copies each of subunits alpha (or A) (IPR005726 from INTERPRO), and beta (or B), both of which form the headpiece that participates in nucleotide binding. However, only the alpha subunit is catalytic, the beta subunit being regulatory in function . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane, 0016469 proton-transporting two-sector ATPase complex.
Probab=99.97 E-value=2.5e-30 Score=218.69 Aligned_cols=336 Identities=15% Similarity=0.115 Sum_probs=283.2
Q ss_pred EEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCE-EEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCC
Q ss_conf 2675045486666556046010000122125987-999886246888763000222255688788512443000200011
Q gi|254780810|r 66 GFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDT-VEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYP 144 (423)
Q Consensus 66 GFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~-V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p 144 (423)
|..|. ...+....+..+...+....++..-.. |...++..+.+....+||||.+..|.|.|+.+.+...+.....-.
T Consensus 34 G~~~~--G~vl~~~~~~~~~~~~~g~~~~~~~~~~v~~~G~~~~~~~~~~~lGr~~~g~G~~~d~GP~~~~~~~~~~~G~ 111 (458)
T TIGR01041 34 GEKRR--GQVLDSSEGLAVVQVFEGTTGLDKEATKVRFLGETLKLPVSEDLLGRILNGSGEPIDGGPEIVPDERRDINGA 111 (458)
T ss_pred CCCCC--CCEEECCCCEEEEEEECCHHCCCCCCCEEEEECCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCC
T ss_conf 87423--4035303765798852111011223417898413024201078888885026775567765243200023565
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC--CCCEEEEEECCCCHHHHHHH
Q ss_conf 2234324778653213688899886551023122204877878999999999986118--86469999508787899999
Q gi|254780810|r 145 DKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNH--PECYLIVLLIDERPEEVTDM 222 (423)
Q Consensus 145 ~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~--~~v~~i~~ligEr~~ev~e~ 222 (423)
+-.+..|..+.+-.++|+.+||.+.++-|||+..||+++|..+..|..+||+...... .+--+++..+|-+.+|...|
T Consensus 112 ~~nP~~r~~P~~fiqtG~s~idG~n~l~rG~kl~~fs~sGlP~~~la~qia~qa~v~~~~~~favvf~a~G~~~~~~~~f 191 (458)
T TIGR01041 112 ALNPAAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQAKVRGEESEFAVVFAAMGITYEEANFF 191 (458)
T ss_pred CCCCHHHCCCHHHHHHCHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCHHHHHHH
T ss_conf 45843220415787511024321245432542110003688777899998863101235532143301022436889999
Q ss_pred HHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 9840-------3427823667888899999999999999999-7799289998163898776200136677767775202
Q gi|254780810|r 223 QRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLV-EYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDA 294 (423)
Q Consensus 223 ~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~-e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~ 294 (423)
...- +..++.+.+|+|+..++..+.+|++.|||+. |+..|||+++-++|.|+.|.|+++.+-.+.|....+|
T Consensus 192 ~~~f~~tGal~r~~~~~~la~~P~~~~~~tP~~alt~aeyla~~~d~hvl~il~d~tny~ealr~~~aar~evPGr~GyP 271 (458)
T TIGR01041 192 MKDFERTGALERAVVFLNLADDPAVERIVTPRMALTLAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYP 271 (458)
T ss_pred HHHHHHCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99886404321100233202673112331036788899987630676466405557789999987643444078888987
Q ss_pred HHHHH-CHHHHHCCCCCC-CCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 46650-468752257777-7785001211201267655413889885226607898087884799974053354221015
Q gi|254780810|r 295 NALQR-PKRFFGAARNIK-EGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKED 372 (423)
Q Consensus 295 ~~l~~-~~~~~~~ar~~~-~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~ 372 (423)
.++|. ...++++|+.+. ..||+|-+--.-.+ +||...||+|-.--+..|+|+|+|+|..+|+||.||++.|.||++.
T Consensus 272 Gy~y~dla~~yeraG~~~G~~G~~tq~Pil~mP-~dd~thPiPdl~GyiteGqi~~~r~l~~~Gi~PP~~~l~slsrl~~ 350 (458)
T TIGR01041 272 GYMYTDLATLYERAGRVKGKKGSITQIPILTMP-GDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMK 350 (458)
T ss_pred CHHHHHHHHHHHHHCEEECCCCCEEEEEEEECC-CCCCCCCCCCCCCEEECCEEEEEEHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 237888999987506021476534530034258-8776577764333011353467302651789881678889999974
Q ss_pred HCCC-----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 5199-----9999999999999612693789999999840
Q gi|254780810|r 373 LLVE-----RQDLQKVFMLRRIVSSMNSSDAIEFLIDKLK 407 (423)
Q Consensus 373 ~l~~-----~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~ 407 (423)
.=.+ ++|.+....+ .+.|.+-..+..|....+
T Consensus 351 ~G~G~G~tr~dh~~~~~q~---ya~ya~~~~~r~l~~~vG 387 (458)
T TIGR01041 351 DGIGEGKTREDHKDVSDQL---YAAYAEGRDLRDLVAIVG 387 (458)
T ss_pred CCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_conf 3678887424589999888---876752456888999860
No 60
>TIGR01042 V-ATPase_V1_A V-type ATPase, A subunit; InterPro: IPR005725 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release . V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c, c d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins . This entry represents subunit A from the V1 complex of V-ATPases. There are three copies each of subunits A and B (IPR005723 from INTERPRO), both of which participate in nucleotide binding. However, only subunit A is catalytic, functioning in ATP hydrolysis to drive the rotation of the D and F subunits of V1, as well as the V0 complex c-ring rotor subunit for proton translocation , . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex.
Probab=99.97 E-value=8.7e-31 Score=221.71 Aligned_cols=281 Identities=18% Similarity=0.231 Sum_probs=236.9
Q ss_pred CCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 22556887885124430002000112234324778653213688899886551023122204877878999999999986
Q gi|254780810|r 120 NAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 120 ~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
+.+.....++....-...+.||++.++........+.|+-+|.|++|.+.|...|....|.+..|+|||++-+.+.++.+
T Consensus 173 ~~~le~ef~G~~~~~~~~~~WPvr~~rP~~~~~~a~~Pll~Gqrvld~lfP~v~GGt~~ipGafGCGktvisq~lskysn 252 (596)
T TIGR01042 173 EKVLEVEFDGKKKKYSMLQVWPVRSPRPVAEKLAANTPLLTGQRVLDALFPSVQGGTTAIPGAFGCGKTVISQSLSKYSN 252 (596)
T ss_pred EEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCCCEEHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 03576542473000245443266665640343135786110146777543332677412035656532576655553214
Q ss_pred HCCCCCEEEEEECCCCHHHHHHHHHHH-----------------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 118864699995087878999999840-----------------342782366788889999999999999999977992
Q gi|254780810|r 200 KNHPECYLIVLLIDERPEEVTDMQRSV-----------------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLD 262 (423)
Q Consensus 200 ~~~~~v~~i~~ligEr~~ev~e~~~~~-----------------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~d 262 (423)
.+ .++|+-.|||+.|+.|....- ++.+|++|++.|...|-...+.+++.||||+|+|.+
T Consensus 253 sd----~i~yvGCGerGnem~evl~~fP~l~~~~~~G~~~~imkrt~lvantsnmPvaareasiytGitl~eyfrd~G~~ 328 (596)
T TIGR01042 253 SD----VIVYVGCGERGNEMAEVLRDFPELTIEVPDGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYN 328 (596)
T ss_pred CC----EEEEEECCCCCHHHHHHHHHCHHHEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 76----17996068751268999863203057404787420233332210024675022111233002576777632872
Q ss_pred EEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHCHHHHHCCCCCC------CCCCCEEEEEEEECCCCCCCCHHH
Q ss_conf 89998163898776200136677767775202466-50468752257777------778500121120126765541388
Q gi|254780810|r 263 VVILLDSITRLCRAYNVLMPSSGKILTGGVDANAL-QRPKRFFGAARNIK------EGGSLTIIGTALVDTGSRMDEVIF 335 (423)
Q Consensus 263 Vll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l-~~~~~~~~~ar~~~------~~Gs~T~~~t~lvetg~~~d~~i~ 335 (423)
|-++.||-+|||.|.|+++...++.|.-..+|++| .....|+++++.+. ..||+|++..+ .+.|.|++||+.
T Consensus 329 ~~m~ads~srWaealreisGrl~emPad~GyPayl~a~lasfye~~G~~~~~G~P~r~G~v~iv~av-sP~GGdfsdPvt 407 (596)
T TIGR01042 329 VSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAV-SPPGGDFSDPVT 407 (596)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEEE-CCCCCCCCCCHH
T ss_conf 6775344036899998763133216667785067887888776305714540488865106899730-689887565212
Q ss_pred HHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCC------HHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 98852266078980878847999740533542210155199------99999999999996126937899999998
Q gi|254780810|r 336 EEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVE------RQDLQKVFMLRRIVSSMNSSDAIEFLIDK 405 (423)
Q Consensus 336 ~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~------~~~~~~~~~~r~~l~~~~~~e~~~~l~~~ 405 (423)
....++....+-||++||.+.|||.||.+.|-|.....|-. ++-...-.++|..|+.-++++..-.|+.+
T Consensus 408 ~atl~i~qvfWGldkklaqrkh~Ps~n~~~sys~y~~~l~~~y~~~~~~f~~lr~~~~~~l~~~~~l~~~vqlvGk 483 (596)
T TIGR01042 408 SATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLRALEEFYEKNYPEFVSLRTKIKEILQEEEELEEIVQLVGK 483 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4454443543312356664215760445332789999999875310303799999999997403458999998411
No 61
>KOG1351 consensus
Probab=99.97 E-value=4.3e-29 Score=210.56 Aligned_cols=324 Identities=14% Similarity=0.152 Sum_probs=257.2
Q ss_pred CCCCCCCEEECCCCCCCCCCC-CCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCC----CCCCCCCCCC
Q ss_conf 666556046010000122125-98799988624688876300022225568878851244300020----0011223432
Q gi|254780810|r 76 LAGPDDIYVSPSQIKSFSLKT-GDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLT----PLYPDKRFNM 150 (423)
Q Consensus 76 l~~~~DiyVs~slir~f~Lr~-GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~----p~~p~~~i~l 150 (423)
+-...+-.|.+.+....++.. -..++.++..++.|++...||||.+..|.|+|..++..+.+.|. |++|-.|+.-
T Consensus 64 lev~g~kavvqvfegtsgid~k~t~~eftg~~lr~pvsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp~~riyp 143 (489)
T KOG1351 64 LEVSGEKAVVQVFEGTSGIDAKKTTVEFTGEILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYP 143 (489)
T ss_pred EEECCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCH
T ss_conf 99608735899950666655442268874341036556877654426899826889975717761147980894000186
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH--HH--------CCCCCEEEE-EECCCCHHHH
Q ss_conf 477865321368889988655102312220487787899999999998--61--------188646999-9508787899
Q gi|254780810|r 151 ELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI--KK--------NHPECYLIV-LLIDERPEEV 219 (423)
Q Consensus 151 e~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~--~~--------~~~~v~~i~-~ligEr~~ev 219 (423)
| +-.+||+.+||.|..|.|||+..||+.+|..+..++.+|++.. .+ .|.|-..|+ +..|---|..
T Consensus 144 e----emiqtgis~idvmnsiargqkipifsaaglphneiaaqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmeta 219 (489)
T KOG1351 144 E----EMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETA 219 (489)
T ss_pred H----HHHHHCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHCCCHHHH
T ss_conf 9----998727327765667742674532333789805899999885371116886644466765477600315658888
Q ss_pred HHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9999840-------3427823667888899999999999999999-7799289998163898776200136677767775
Q gi|254780810|r 220 TDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLV-EYGLDVVILLDSITRLCRAYNVLMPSSGKILTGG 291 (423)
Q Consensus 220 ~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~-e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg 291 (423)
+=|++.- +.-.+...+++|...|+..+.+|++.|||+. +++||||+++.+++.||.|.||++.+-.|.|..-
T Consensus 220 rffk~dfeengsm~~v~lflnlandptieriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrr 299 (489)
T KOG1351 220 RFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRR 299 (489)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99886687558700057787417897443202403566689999876347389998330778999999777664278867
Q ss_pred CCHHHHHH-CHHHHHCCCCCC-CCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCC
Q ss_conf 20246650-468752257777-7785001211201267655413889885226607898087884799974053354221
Q gi|254780810|r 292 VDANALQR-PKRFFGAARNIK-EGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTR 369 (423)
Q Consensus 292 ~~~~~l~~-~~~~~~~ar~~~-~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR 369 (423)
.+|.++|. ...++++|+-+| .+||||-|--.-.+ .||...||+|-.--+..|+|+.||.|-++.|||.||++-|.||
T Consensus 300 g~pgymytdlatiyeragrvegr~gsitqipiltmp-nddithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsr 378 (489)
T KOG1351 300 GYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMP-NDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSR 378 (489)
T ss_pred CCCCEEHHHHHHHHHHHCCCCCCCCCEEEEEEEECC-CCCCCCCCCCCCCEEECCEEEEEHHHHCCCCCCCCCCCHHHHH
T ss_conf 888610024799998733333678854641367248-8766787876455231345887232332567897011666899
Q ss_pred CHHHCCC-----HHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 0155199-----9999999999999612693789999999
Q gi|254780810|r 370 KEDLLVE-----RQDLQKVFMLRRIVSSMNSSDAIEFLID 404 (423)
Q Consensus 370 ~~~~l~~-----~~~~~~~~~~r~~l~~~~~~e~~~~l~~ 404 (423)
+|....+ ++|-.....|-...+--+++++|.....
T Consensus 379 lmksaigegmtr~dh~dvsnqlya~yaigkdvqamkavvg 418 (489)
T KOG1351 379 LMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG 418 (489)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 9998765786435321467788999884311899998744
No 62
>TIGR01040 V-ATPase_V1_B V-type ATPase, B subunit; InterPro: IPR005723 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release . V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c, c d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins . This entry represents subunit B from the V1 complex of V-ATPases. There are three copies each of subunits A (IPR005725 from INTERPRO) and B, both of which participate in nucleotide binding. However, only subunit A is catalytic for ATP hydrolysis, subunit B being noncatalytic , . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0008553 hydrogen-exporting ATPase activity phosphorylative mechanism, 0015988 energy coupled proton transport against electrochemical gradient, 0005737 cytoplasm.
Probab=99.94 E-value=1.5e-25 Score=187.33 Aligned_cols=333 Identities=13% Similarity=0.110 Sum_probs=270.1
Q ss_pred CCCCCCCCEEECCCCCCCCCCCC-CEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 66665560460100001221259-87999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 75 YLAGPDDIYVSPSQIKSFSLKTG-DTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 75 yl~~~~DiyVs~slir~f~Lr~G-D~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
.+....+-.+.+.+....|+..- ..+..++...+.++...+||||.+..|.|+|..+.....+.+...-.+-.+..|.-
T Consensus 41 vle~~~~~a~vqvfeGt~G~d~~~~~~~~~G~~l~~~~s~~mlGr~f~GsG~~id~gP~~l~~~y~d~~G~~inP~~r~y 120 (464)
T TIGR01040 41 VLEVSGEKAVVQVFEGTSGIDAKKTTVEFTGDILRLPVSEDMLGRVFNGSGKPIDKGPKVLAEDYLDINGQPINPQARIY 120 (464)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf 57760772089982476441222314554210231122045310110367752235653103544114786458621147
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH-------HHCCCCCEEEE-EECCCCHHHHHHHHHH
Q ss_conf 865321368889988655102312220487787899999999998-------61188646999-9508787899999984
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI-------KKNHPECYLIV-LLIDERPEEVTDMQRS 225 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~-------~~~~~~v~~i~-~ligEr~~ev~e~~~~ 225 (423)
+.+-.++|+..||.+..|.|||+..||+.+|..+..+..+|++.. ..++.+-.+++ ...|-.-+..+=|...
T Consensus 121 P~em~~tG~s~id~~~si~rGqkiP~fsa~GlPhne~aaqi~rq~~lv~~~~~~~~~~~f~~vf~amGvn~e~a~ff~~d 200 (464)
T TIGR01040 121 PEEMIQTGISAIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKKDVKDGHEDNFAIVFAAMGVNLETARFFKQD 200 (464)
T ss_pred HHHHHHHCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCHHHHHHHHHHH
T ss_conf 38898502025665666543653312304788635678888887788888764022343156520010105788999886
Q ss_pred H-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 0-------3427823667888899999999999999999-7799289998163898776200136677767775202466
Q gi|254780810|r 226 V-------QGEVISSTFDESAARHVQVAEMVIAKAKCLV-EYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANAL 297 (423)
Q Consensus 226 ~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~-e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l 297 (423)
- +..++.+.+++|...|+..+.+|++.|||+. +.++|||+++.+++.||.|.|+++.+-.+.|..-.+|.++
T Consensus 201 f~~~G~~~~~~lflnlandPt~eri~tPr~al~~ae~lay~~~~hvl~iltd~ssya~alrevsaareevPgrrG~PGym 280 (464)
T TIGR01040 201 FEENGSMERVTLFLNLANDPTIERIITPRLALTTAEYLAYECEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYM 280 (464)
T ss_pred HHHCCCHHHEEEEEEECCCCCCHHHHCHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 75347710135665414785301220003677778777652476079985033579999987765554067778887325
Q ss_pred HH-CHHHHHCCCCC-CCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 50-46875225777-77785001211201267655413889885226607898087884799974053354221015519
Q gi|254780810|r 298 QR-PKRFFGAARNI-KEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLV 375 (423)
Q Consensus 298 ~~-~~~~~~~ar~~-~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~ 375 (423)
|. ...++++|+.+ -..||+|-+--.-.+ .+|...||+|-.--+..++|++||.|.++.+||.||++-|.||++...+
T Consensus 281 y~dl~~iyeraGrv~Gr~Gsitq~PiltmP-nddithPiPdltGyitegqiy~dr~l~~~~iyPPi~vlPslsrlmk~ai 359 (464)
T TIGR01040 281 YTDLATIYERAGRVEGRNGSITQIPILTMP-NDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAI 359 (464)
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEEECC-CCCCCCCCCCCCCEEECCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 777899876304211676642420024257-6445677653211022242455101430557883235566899988752
Q ss_pred C-----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 9-----99999999999996126937899999998402
Q gi|254780810|r 376 E-----RQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQ 408 (423)
Q Consensus 376 ~-----~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~ 408 (423)
+ .+|-.....+-...+--+++.+|...+..-.-
T Consensus 360 G~gmtr~dh~~vs~qly~~~~~~~d~~amkavvG~eal 397 (464)
T TIGR01040 360 GEGMTRKDHSDVSNQLYAKYAIGKDVAAMKAVVGEEAL 397 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 35310124788999999888888789999887402221
No 63
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.89 E-value=1.2e-21 Score=161.58 Aligned_cols=153 Identities=28% Similarity=0.339 Sum_probs=130.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 22204877878999999999986118864699995087878999999840-------34278236678888999999999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMV 249 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a 249 (423)
.+|+||||+|||+|+.++|.++.. ++..++|+.++|+.+|+.++.... +..++.+++++++..++.
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~--~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 74 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL----- 74 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH-----
T ss_conf 899989999899999999999876--3997999986664489999999862246713079993599976999999-----
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 99999999779928999816389877620013667776777520246650468752257777778500121120126765
Q gi|254780810|r 250 IAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSR 329 (423)
Q Consensus 250 ~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~ 329 (423)
++++++++++++||+++||+|++++|+++.. +|+++...+...+|.+.|+ .+++|.+.+..+.. ++
T Consensus 75 -~~~~~~~~~~~~vliiiDSit~~~~a~~e~~--------~g~~~~v~~~~~~L~~~Ak----~~~itvi~i~~v~~-d~ 140 (165)
T cd01120 75 -SKAERLRERGGDDLIILDELTRLVRALREIR--------EGYPGELDEELRELLERAR----KGGVTVIFTLQVPS-GD 140 (165)
T ss_pred -HHHHHHHHCCCCEEEEEECHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHH----CCCCEEEEEEEEEC-CC
T ss_conf -9999999869977999928899887740015--------8867899999999999997----79828999998433-77
Q ss_pred CCCH----HHHHHHHCCCCEEEEEH
Q ss_conf 5413----88988522660789808
Q gi|254780810|r 330 MDEV----IFEEFKGTGNSEIVLER 350 (423)
Q Consensus 330 ~d~~----i~~~~~~~~d~~i~L~r 350 (423)
..+| ++++++.+.|++|+|+|
T Consensus 141 ~~~~~~~~g~~~l~~~~d~~i~L~r 165 (165)
T cd01120 141 KGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred CCCCCCCCHHHHHHHHCCEEEEEEC
T ss_conf 8997725388888364266999839
No 64
>pfam07497 Rho_RNA_bind Rho termination factor, RNA-binding domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers.
Probab=99.84 E-value=1.6e-21 Score=160.79 Aligned_cols=78 Identities=76% Similarity=1.300 Sum_probs=75.5
Q ss_pred EEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHH
Q ss_conf 899999854047702675045486666556046010000122125987999886246888763000222255688788
Q gi|254780810|r 52 IIGEGVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPER 129 (423)
Q Consensus 52 ~~~eGvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~ 129 (423)
++++|+|||++|||||||++++||+++++|+|||++|||+|+||+||.|.|++|+|+.+++|++|.+|++|||.+||+
T Consensus 1 i~~eGiLei~~dGyGFLR~~~~~y~~~~~DvyVs~~~Irrf~LR~GD~V~G~vR~p~~~ek~~aL~~V~~VNG~~PEe 78 (78)
T pfam07497 1 IFGEGVLEILPDGFGFLRSPDANYLPGPDDIYVSPSQIRRFNLRTGDTIEGKIRPPKEGERYFALLKVETINGEPPEK 78 (78)
T ss_pred CCEEEEEEECCCCCEEEECCCCCCCCCCCCEEECHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 914799998589837947786587999888788999998719988889999987999898752106897588908797
No 65
>cd04459 Rho_CSD Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Probab=99.75 E-value=1.5e-18 Score=141.10 Aligned_cols=68 Identities=75% Similarity=1.269 Sum_probs=65.9
Q ss_pred EEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECC
Q ss_conf 99998540477026750454866665560460100001221259879998862468887630002222
Q gi|254780810|r 54 GEGVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNA 121 (423)
Q Consensus 54 ~eGvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~ 121 (423)
++|+|||++|||||||++.+||+++++|+|||++|||+|+||+||.|.|++|+|+.+++|++|.+|++
T Consensus 1 ~~GiLei~~dGyGFLR~~~~ny~~~~~DvyVs~~~Irrf~LR~GD~V~G~vR~p~~~Eky~al~~ves 68 (68)
T cd04459 1 GSGVLEILPDGFGFLRSSGYNYLPGPDDIYVSPSQIRRFNLRTGDTVVGQIRPPKEGERYFALLKVEA 68 (68)
T ss_pred CCEEEEECCCCCEEEECCCCCCCCCCCCEEECHHHHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEC
T ss_conf 96689974898289678987788998887899999977399889999997779998886410088619
No 66
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.60 E-value=1.6e-06 Score=61.97 Aligned_cols=250 Identities=14% Similarity=0.158 Sum_probs=145.5
Q ss_pred EEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEE---CCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4601000012212598799988624688876300022---2255688788512443000200011223432477865321
Q gi|254780810|r 83 YVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKV---NAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKD 159 (423)
Q Consensus 83 yVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV---~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~ 159 (423)
|++...|.......|....+..++.|-.-..+..+.- .+-+|.. -|. +++. .+.. ....+...
T Consensus 184 ~vaDGVI~L~~~~~~~~~~R~L~V~KmRGs~~~~g~h~f~It~~Gi~--------V~P-~~~~----~~~~-~~~~~rv~ 249 (501)
T PRK09302 184 FVSDCVVILRNVLEGEKRTRTLEILKYRGTTHGKGEYPFTITEDGIS--------VLP-LTAM----RLTQ-RSSNERIS 249 (501)
T ss_pred HHCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCEE--------EEE-CCHH----HCCC-CCCCCCCC
T ss_conf 20130788765414885258999998358866687233798799889--------980-3624----3356-66520004
Q ss_pred HHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---------CC
Q ss_conf 36888998865--51023122204877878999999999986118864699995087878999999840---------34
Q gi|254780810|r 160 ISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---------QG 228 (423)
Q Consensus 160 ~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---------~~ 228 (423)
+|+.-+|.|+- +-+|--.+|.+|||+|||++..+.+.+-.++. =.|+|+.-.|.++.+..-.+.+ .+
T Consensus 250 tGi~~LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~G--E~~l~~~FeE~~~~l~~~a~~~G~dl~~~~~~G 327 (501)
T PRK09302 250 SGVPDLDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACRRG--ERCLLFAFEESRAQLVRNATSWGIDLEEMERKG 327 (501)
T ss_pred CCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEEEECCHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 797327887259975894699988999888999999999998659--908999996799999999997399848887489
Q ss_pred E--E-EECCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHH
Q ss_conf 2--7-8236678888999999999999999997-7992899981638987762001366777677752024665046875
Q gi|254780810|r 229 E--V-ISSTFDESAARHVQVAEMVIAKAKCLVE-YGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFF 304 (423)
Q Consensus 229 ~--v-v~st~d~~~~~~~~~a~~a~~~a~~~~e-~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~ 304 (423)
. + .......++..|... -...++ .+-+ .+++||++-|..|..+. .+ -..+. +|
T Consensus 328 ~l~i~~~~p~~~~~~e~~~~-------i~~~v~~~~~~-rVvIDsls~~~~~~~~~----------~~-r~~l~---~L- 384 (501)
T PRK09302 328 LLKIICARPESTGLEDHLQI-------IKREIEEFKPS-RVAVDPLSALARGGSLN----------EF-RQFVI---RL- 384 (501)
T ss_pred CEEEEEECCCCCCHHHHHHH-------HHHHHHHCCCC-EEEECCHHHHHHHCCHH----------HH-HHHHH---HH-
T ss_conf 47999837000598999999-------99999972998-99995806876526859----------99-99999---99-
Q ss_pred HCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCC-CCCCHHHC
Q ss_conf 22577777785001211201267655413889885226607898087884799974053354-22101551
Q gi|254780810|r 305 GAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKS-GTRKEDLL 374 (423)
Q Consensus 305 ~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S-~sR~~~~l 374 (423)
.....+ -++|.+.|.+.+....-..+-...+-...|.-|.|..--.+-.+.=||-|+|+ +|..+..+
T Consensus 385 --~~~Lk~-~gvT~l~t~~~~~~~g~~~~t~~~iS~l~D~ii~Lry~E~~g~l~R~i~VlK~R~s~h~~~i 452 (501)
T PRK09302 385 --TDYLKQ-EEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVEINGEMNRALNVLKMRGSWHSKQI 452 (501)
T ss_pred --HHHHHH-CCCEEEEEEECCCCCCCCCCCCCCHHHHCCEEEEEEEEEECCEEEEEEEEEEECCCCCCCCE
T ss_conf --999976-89789997612355676644766600111247899987138999898999993689657753
No 67
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.35 E-value=3.7e-06 Score=59.67 Aligned_cols=185 Identities=19% Similarity=0.216 Sum_probs=108.1
Q ss_pred CCCCHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 532136888998865--51023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 156 ENKDISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 156 ~p~~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
+...||+.-+|-+.- +-+|.-.+|.|+||+|||++..+.+.+..++ ...|+|+...|-++....-.++.
T Consensus 12 e~i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~--g~~~~~~~~ee~~~~~~~~~~~~g~dl~~~ 89 (241)
T PRK06067 12 EIISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQ--GKRGLAITTENTSKSYLKQMESLKLDISDF 89 (241)
T ss_pred CCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEECCCHHHHHHHHHHCCCCHHHH
T ss_conf 525668755786506997799089998079988799999999999867--982999994289999999999839985999
Q ss_pred --CCE--EE---ECCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf --342--78---236678888999999999999999997-7992899981638987762001366777677752024665
Q gi|254780810|r 227 --QGE--VI---SSTFDESAARHVQVAEMVIAKAKCLVE-YGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQ 298 (423)
Q Consensus 227 --~~~--vv---~st~d~~~~~~~~~a~~a~~~a~~~~e-~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~ 298 (423)
.+. +. .+.++..+. .++..+..-...++ .+.+| +++||+|=++...++.. + -..++
T Consensus 90 ~~~G~L~i~~~~~~~~~~~~~----~~~~ll~~l~~~v~~~~~~~-vVIDSls~l~~~~~~~~----------~-~~~l~ 153 (241)
T PRK06067 90 FIWGYLRIFPLNTEGFEWNSE----LAEKLLDLIIEFIKRRREEV-IIIDSLTIFATYASEDD----------V-LNFFT 153 (241)
T ss_pred HHCCCCEEEECCCCCCCCCHH----HHHHHHHHHHHHHHHHCCCE-EEECCHHHHHCCCCHHH----------H-HHHHH
T ss_conf 866970578324111342155----68999999999999719989-99928017541388899----------9-99999
Q ss_pred HCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCC-CCC
Q ss_conf 04687522577777785001211201267655413889885226607898087884799974053354-221
Q gi|254780810|r 299 RPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKS-GTR 369 (423)
Q Consensus 299 ~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S-~sR 369 (423)
..+.+. ..| .|++.|.- + .-+++.....+..+.|+-|.|+..-.+-...=.+.|.|. +|+
T Consensus 154 ~l~~l~-------~~g-~tvllt~~-~--~~~~~~~~~~i~~vaD~vI~Lr~~~~~g~~~R~L~V~K~RGs~ 214 (241)
T PRK06067 154 ECKNLC-------DNG-KTILITLH-P--YAFSEDTLVRIRSICDVHLKLRKEQVGDRYVKVLEVVKLRGAR 214 (241)
T ss_pred HHHHHH-------HCC-CEEEEEEC-C--CCCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEEEEEECCCC
T ss_conf 999999-------689-88999905-6--7647664312489989999958784399999999999915998
No 68
>pfam07498 Rho_N Rho termination factor, N-terminal domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).
Probab=98.35 E-value=4.6e-07 Score=65.63 Aligned_cols=43 Identities=44% Similarity=0.581 Sum_probs=40.3
Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9970998999999998389885766678999999987520587
Q gi|254780810|r 8 ELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDV 50 (423)
Q Consensus 8 eL~~~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g 50 (423)
||+++++.||.++|+++||+++++|+|+||||+|++.+++.+|
T Consensus 1 eL~~~~~~eL~~iA~elgI~~~s~~rKqeLIf~Ilk~qa~~~g 43 (43)
T pfam07498 1 ELKEKTLAELREIAKELGIENYSRLRKQELIFAILKAQAEKGG 43 (43)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9331889999999999499870014599999999999977278
No 69
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=98.24 E-value=1.8e-05 Score=55.10 Aligned_cols=186 Identities=22% Similarity=0.223 Sum_probs=107.8
Q ss_pred CCCHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH--------
Q ss_conf 32136888998865--51023122204877878999999999986118864699995087878999999840--------
Q gi|254780810|r 157 NKDISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------- 226 (423)
Q Consensus 157 p~~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------- 226 (423)
...||+.-+|-+.- +-+|.-.+|.|+||+|||++..+.+...... .-.|+++...|-++++.+..++.
T Consensus 4 ~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~ 81 (260)
T COG0467 4 RIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEELLENARSFGWDLEVYI 81 (260)
T ss_pred CCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC--CCEEEEEEEECCHHHHHHHHHHCCCCHHHHH
T ss_conf 56899741888836898899789999389986899999999977626--9858999920698999999988099778975
Q ss_pred -CCE--EEECCCCCCHHH------HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf -342--782366788889------99999999999999997799289998163898776200136677767775202466
Q gi|254780810|r 227 -QGE--VISSTFDESAAR------HVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANAL 297 (423)
Q Consensus 227 -~~~--vv~st~d~~~~~------~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l 297 (423)
.+. ++.+.....+.. -.....+.-.+-+...+.+ ...+++||+|.+....+.-. +
T Consensus 82 ~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~~~---------------~ 145 (260)
T COG0467 82 EKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLNDPA---------------L 145 (260)
T ss_pred HCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHCCCHH---------------H
T ss_conf 4440687631211125420104665228999999999998628-98899966307766527825---------------7
Q ss_pred HHCHHHHHC-CCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCC-CCCCCCC
Q ss_conf 504687522-57777778500121120126765541388988522660789808788479997-4053354
Q gi|254780810|r 298 QRPKRFFGA-ARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFP-AMDIIKS 366 (423)
Q Consensus 298 ~~~~~~~~~-ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~P-AId~~~S 366 (423)
. +++... .+..++.+ .|.+.+.-...+.+... .......||.|.|+....+-+.+- .+.+.+=
T Consensus 146 ~--r~~~~~l~~~~~~~~-~t~~~~~~~~~~~~~~~---~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~k~ 210 (260)
T COG0467 146 V--RRILLLLKRFLKKLG-VTSLLTTEAPVEERGES---GVEEYIVDGVIRLDLKEIEGGGDRRYLRILKM 210 (260)
T ss_pred H--HHHHHHHHHHHHHCC-EEEEEEECCCCCCCCCC---CCEEEEEEEEEEEEEEECCCCEEEEEEEEEEC
T ss_conf 8--999999998765068-48999974433466656---61421689999997772257248889999834
No 70
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.15 E-value=6e-06 Score=58.25 Aligned_cols=96 Identities=26% Similarity=0.227 Sum_probs=68.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 02312220487787899999999998611886469999508787899999984034278236678888999999999999
Q gi|254780810|r 173 KGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 173 ~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~ 252 (423)
+++..+|+||||+|||+++..+|..+...+ ..++.+..+...+...+... ......+.....+...++...+.
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~---~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 73 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLL----LIIVGGKKASGSGELRLRLALAL 73 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCC---CCEEEEEHHHHHHHHHHHHH----HHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 997899999997029999999998726689---96899875998988898765----30001122105199999999999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHC
Q ss_conf 999997799289998163898776200
Q gi|254780810|r 253 AKCLVEYGLDVVILLDSITRLCRAYNV 279 (423)
Q Consensus 253 a~~~~e~G~dVll~~DslTR~ArA~~~ 279 (423)
|++.. ..++++|++.++......
T Consensus 74 ~~~~~----~~viiiDei~~~~~~~~~ 96 (148)
T smart00382 74 ARKLK----PDVLILDEITSLLDAEQE 96 (148)
T ss_pred HHHCC----CCEEEEECCHHHCCCCCH
T ss_conf 98449----989998275021476207
No 71
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=98.14 E-value=3.4e-05 Score=53.29 Aligned_cols=186 Identities=22% Similarity=0.220 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---------C
Q ss_conf 136888998865--51023122204877878999999999986118864699995087878999999840---------3
Q gi|254780810|r 159 DISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---------Q 227 (423)
Q Consensus 159 ~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---------~ 227 (423)
.||+.-+|-+.. +-+|.-.+|.|+||+|||+++.+.+..-..++.+ .|+|+...|.++++..-.+.. .
T Consensus 2 ~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge-~~lYis~ee~~~~l~~~~~~~g~~~~~~~~~ 80 (231)
T pfam06745 2 KTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGE-PGVYVTLEEPPEDLRENAKSFGWDLEKLEEE 80 (231)
T ss_pred CCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEEEECCCHHHHHHHHHHCCCCHHHHHHC
T ss_conf 889556886316998299699998589725999999999999986589-6899981379999999999829985898646
Q ss_pred C--EEEECCCCCCH----HHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCH
Q ss_conf 4--27823667888----89999999999999999977992899981638987762001366777677752024665046
Q gi|254780810|r 228 G--EVISSTFDESA----ARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPK 301 (423)
Q Consensus 228 ~--~vv~st~d~~~----~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~ 301 (423)
+ .++-.+.+... ......-.+.....+...+.+-+ .+++||+|-+...+.. ..+.....
T Consensus 81 g~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~vVIDsit~l~~~~~~--------------~~~r~~l~ 145 (231)
T pfam06745 81 GKLAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAK-RVVIDSITTLFYLLKP--------------AMAREILR 145 (231)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-EEEEECCHHHHHCCCH--------------HHHHHHHH
T ss_conf 96789862544222100112279999999999999971998-8999764164005889--------------99999999
Q ss_pred HHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHH-HCCCCEEEEEHHHHHCCCCCCCCCCCC
Q ss_conf 87522577777785001211201267655413889885-226607898087884799974053354
Q gi|254780810|r 302 RFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFK-GTGNSEIVLERKIADKRIFPAMDIIKS 366 (423)
Q Consensus 302 ~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~-~~~d~~i~L~r~la~~~~~PAId~~~S 366 (423)
.++... .+ -..|.+.|.-...++. ......+. .+.|+-|.|+..-.+.+..=++-|.|.
T Consensus 146 ~l~~~l---k~-~g~t~l~t~e~~~~~~--~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I~K~ 205 (231)
T pfam06745 146 RLKRVL---KK-LGVTAIFTSEKPSGEG--GIGGYGVEEFVVDGVIRLDLKEIEGELVRTIEIVKM 205 (231)
T ss_pred HHHHHH---HH-CCCEEEEEEEECCCCC--CCCCCCHHHHEEEEEEEEEEECCCCEEEEEEEEEEC
T ss_conf 999999---97-6991999982125777--656763011100369999988249989999999986
No 72
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.06 E-value=3.7e-05 Score=53.04 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=86.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---------CCE--EEE-CCCCCCHHHHHH
Q ss_conf 22204877878999999999986118864699995087878999999840---------342--782-366788889999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---------QGE--VIS-STFDESAARHVQ 244 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---------~~~--vv~-st~d~~~~~~~~ 244 (423)
.+|.|+||+|||++..+++.+-.++. -.|+|+...|.++.+.+-.+.. .+. ++- .+....+.....
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~g--e~~lyis~eE~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~~ 79 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG--EPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHHH
T ss_conf 15876899999999999999998769--9789999507999999999983998589864585689962620022033323
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEE
Q ss_conf 99999999999997799289998163898776200136677767775202466504687522577777785001211201
Q gi|254780810|r 245 VAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALV 324 (423)
Q Consensus 245 ~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lv 324 (423)
...+.-.+.+...+.+-++ +++||+|-+..... .........++.. ..+ -..|.+.|+-.
T Consensus 80 ~~~l~~~i~~~i~~~~~~~-vVIDSi~~l~~~~~---------------~~~~~~~~~l~~~---l~~-~~~t~ll~~e~ 139 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKR-VVIDSVSGLLLMEQ---------------STARLEIRRLLFA---LKR-FGVTTLLTSEQ 139 (187)
T ss_pred HHHHHHHHHHHHHHHCCCE-EEECCHHHHHHCCH---------------HHHHHHHHHHHHH---HHH-CCCCEEEEEEE
T ss_conf 6789999999999849989-99948688752566---------------6689999999999---997-69968999974
Q ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCC
Q ss_conf 267655413889885226607898087884799974053354
Q gi|254780810|r 325 DTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKS 366 (423)
Q Consensus 325 etg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S 366 (423)
... ..+...+....-..||-|.|...--+.+..-.|-|.|-
T Consensus 140 ~~~-~~~~~~~~~~~~l~DgiI~L~~~~~~~~~~R~l~I~Km 180 (187)
T cd01124 140 SGL-EGTGFGGGDVEYLVDGVIRLRLDEEGGRLRRSLSVVKM 180 (187)
T ss_pred CCC-CCCCCCCCCEEEEEEEEEEEEEEECCCEEEEEEEEEEC
T ss_conf 256-67667888477997899999788049979999999985
No 73
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.03 E-value=0.00017 Score=48.71 Aligned_cols=157 Identities=20% Similarity=0.189 Sum_probs=95.3
Q ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---------CCE-EEECC---CCC
Q ss_conf 51023122204877878999999999986118864699995087878999999840---------342-78236---678
Q gi|254780810|r 171 IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---------QGE-VISST---FDE 237 (423)
Q Consensus 171 ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---------~~~-vv~st---~d~ 237 (423)
|-+|.-.+|.|+||+|||++.++++.+..+|. ..|.|+-.-|-.++.-+..++. .+. ++..- +..
T Consensus 21 ip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g--~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l~~i~~~~~~~~ 98 (230)
T PRK08533 21 IPFGSIILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSG 98 (230)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCCCCC
T ss_conf 88984899986899878999999999998789--8699999438999999999986998179975796799961343354
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCE
Q ss_conf 88899999999999999999779928999816389877620013667776777520246650468752257777778500
Q gi|254780810|r 238 SAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLT 317 (423)
Q Consensus 238 ~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T 317 (423)
+....-....+..+ .+-..+|| +++||+|-+.... .-+..++.. +.-.|++-..| -|
T Consensus 99 ~~~~~~~L~~ll~~----~~~~~~dv-IIIDSlS~l~~~~-------------~~~~~~~~~----~~~lk~l~s~g-kt 155 (230)
T PRK08533 99 NSEKRDFLDKLMNT----RRFYEKDV-VIIDSLSSLVSRD-------------ASEVQIRDL----MAFFKRISSLN-KV 155 (230)
T ss_pred HHHHHHHHHHHHHH----HHHCCCCE-EEEECCHHHHHCC-------------CCHHHHHHH----HHHHHHHHHCC-CE
T ss_conf 04578999999732----66437989-9990531885167-------------778999999----99999998589-88
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHC
Q ss_conf 12112012676554138898852266078980878847
Q gi|254780810|r 318 IIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADK 355 (423)
Q Consensus 318 ~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~ 355 (423)
++.|+= .+.+++-...-+++..|++|.|+.+...-
T Consensus 156 IilTv~---p~~~~e~~l~~lrs~aDv~i~L~~~~vGg 190 (230)
T PRK08533 156 IILTAN---PKELPESVLLILRTASTILIRLEVKVFGG 190 (230)
T ss_pred EEEEEC---CCCCCHHHHHHHHEEEEEEEEEEEEECCC
T ss_conf 999956---33136245442041048999987361098
No 74
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=98.03 E-value=3.8e-06 Score=59.57 Aligned_cols=130 Identities=22% Similarity=0.350 Sum_probs=80.4
Q ss_pred ECCCCCCCCCCCCEEECCCCCCC-------CCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCC
Q ss_conf 04548666655604601000012-------21259879998862468887630002222556887885124430002000
Q gi|254780810|r 70 SPDANYLAGPDDIYVSPSQIKSF-------SLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPL 142 (423)
Q Consensus 70 ~~~~~yl~~~~DiyVs~slir~f-------~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~ 142 (423)
.++..|....+|.--...++..+ .||.|=. |.+ -|.+-.+.||++.=|+ .+-..+.+..|.
T Consensus 31 ~~~~~y~~~~eD~~~~~~~~S~ySlYA~EeElk~GYI---Ti~---GGHRVGlaG~~V~E~~-~vk~ik~v~S~N----- 98 (282)
T TIGR02858 31 ESDSDYIPTVEDVEAILQLISQYSLYAFEEELKQGYI---TIE---GGHRVGLAGRCVLENG-KVKTIKNVASLN----- 98 (282)
T ss_pred CCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCEE---EEE---CCEEEEEECEEEEECC-CEEEEECCCCCC-----
T ss_conf 5887713028889999998763124565576507607---854---6726753037995078-464510546421-----
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHCCCCEEEECCCCCCHHHHHHHHHHHHHH-----CCCCCEEEEEECCCCH
Q ss_conf 112234324778653213688899886-5510231222048778789999999999861-----1886469999508787
Q gi|254780810|r 143 YPDKRFNMELNNPENKDISSRVIDLIA-PIGKGQRSLIVAPPRTGKTILLQNIAHSIKK-----NHPECYLIVLLIDERP 216 (423)
Q Consensus 143 ~p~~~i~le~~~~~p~~~~~~~id~~~-pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~-----~~~~v~~i~~ligEr~ 216 (423)
=|+-. |..-.+-.+++-+. -=++=+-.||++||++||||||.+|||.+.. +.+-+.+ +.||||.
T Consensus 99 ---iRIaR-----E~~G~A~~~~~yL~d~~~~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KV--givDERS 168 (282)
T TIGR02858 99 ---IRIAR-----EVLGAADKILPYLVDRNGRVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKV--GIVDERS 168 (282)
T ss_pred ---EEEEE-----ECCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCE--EEEECCH
T ss_conf ---33020-----0057756668877305894467888868898851048889888607854246899746--9984324
Q ss_pred HHHHHH
Q ss_conf 899999
Q gi|254780810|r 217 EEVTDM 222 (423)
Q Consensus 217 ~ev~e~ 222 (423)
| +.=-
T Consensus 169 E-IAgC 173 (282)
T TIGR02858 169 E-IAGC 173 (282)
T ss_pred H-HHHH
T ss_conf 6-5654
No 75
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.93 E-value=0.00013 Score=49.40 Aligned_cols=113 Identities=23% Similarity=0.265 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC--CHHHHHHHHHH-----
Q ss_conf 6532136888998865--51023122204877878999999999986118864699995087--87899999984-----
Q gi|254780810|r 155 PENKDISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE--RPEEVTDMQRS----- 225 (423)
Q Consensus 155 ~~p~~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE--r~~ev~e~~~~----- 225 (423)
.|...||+..+|-+.- |-+|+=..|.|+||+|||+|+.++|.+...+.. .|+|+ -+| .++...++...
T Consensus 2 ~erisTG~~~lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~g~--~vlYi-dtE~~~~er~~qi~~~~~~~~ 78 (224)
T PRK09361 2 EELLPTGCKSLDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEAARQGK--KVIYI-DTEGLSPERFKQIAGEDFEEL 78 (224)
T ss_pred CCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC--CEEEE-CCCCCCHHHHHHHHCCCHHHH
T ss_conf 853037978999862699888879999899998599999999999997499--09996-787678899999856573454
Q ss_pred HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 0342782366788889999999999999999977992899981638987762
Q gi|254780810|r 226 VQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAY 277 (423)
Q Consensus 226 ~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~ 277 (423)
.....+....+-.. ...++..++.+..++ --++++||+|-+-++.
T Consensus 79 ~~~i~~~~~~~~~~------~~~~i~~~~~~~~~~-~~lvVIDSi~~~~~~e 123 (224)
T PRK09361 79 LSNIIIFEPSSFEE------QREAIQKAEKIAKEN-VGLIVLDSATSLYRLE 123 (224)
T ss_pred HHCCEEECCCCHHH------HHHHHHHHHHHHHCC-CCEEEEECCHHHEEHH
T ss_conf 20614724798899------999999999875058-7389996230100000
No 76
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.79 E-value=0.00067 Score=44.78 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 32136888998865--5102312220487787899999999998611886469999508787899999984
Q gi|254780810|r 157 NKDISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRS 225 (423)
Q Consensus 157 p~~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~ 225 (423)
...||+.-+|-+.- +-+|.-.+|-|+||+|||++..+...+-.+++.+ .|+|+...|.++++.+..++
T Consensus 5 Ri~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE-~~lyitl~E~~~~l~~~~~~ 74 (501)
T PRK09302 5 KLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGE-PGVFVTFEESPEDIIRNVAS 74 (501)
T ss_pred CCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHH
T ss_conf 21448711577854898899779998389999999999999999885599-78999857999999999998
No 77
>PRK04328 hypothetical protein; Provisional
Probab=97.78 E-value=0.00025 Score=47.59 Aligned_cols=188 Identities=22% Similarity=0.253 Sum_probs=103.9
Q ss_pred CCCHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH--------
Q ss_conf 32136888998865--51023122204877878999999999986118864699995087878999999840--------
Q gi|254780810|r 157 NKDISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------- 226 (423)
Q Consensus 157 p~~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------- 226 (423)
...||+.-+|-++. +-+|.-.+|.|+||+|||++..+.+..-.++. -.|+|+...|.|+.+.+-.+..
T Consensus 5 Rv~TGI~gLD~lL~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~g~~~G--E~~lyis~eE~~~~l~~~~~~~G~d~~~~~ 82 (250)
T PRK04328 5 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMG--EPGIYVALEEHPVQVRRNMAQFGWDVRKYE 82 (250)
T ss_pred EECCCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC--CCEEEEEEECCHHHHHHHHHHCCCCHHHHH
T ss_conf 103585667875159987996999982899998999999999998769--977999972799999999998099868986
Q ss_pred -CCE--EEEC-C--CCCCHHHHH-------HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf -342--7823-6--678888999-------99999999999999779928999816389877620013667776777520
Q gi|254780810|r 227 -QGE--VISS-T--FDESAARHV-------QVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVD 293 (423)
Q Consensus 227 -~~~--vv~s-t--~d~~~~~~~-------~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~ 293 (423)
.+. ++-+ + ..+.+...- -.-++.-...+...+.+-+ .+++||+|-+..+ .+. ..
T Consensus 83 ~~g~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-rvVIDSit~l~~~----~~~--------~~ 149 (250)
T PRK04328 83 EEGKFAIVDAFTGGIGEAAEREKYVVKDPDDVRELIDVLRQAIRDIGAK-RVVIDSVSTLYLT----KPA--------VA 149 (250)
T ss_pred HCCCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC-EEEEECCHHHHHC----CHH--------HH
T ss_conf 5697799851233334200000101368535999999999999851898-8999370787745----858--------89
Q ss_pred HHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCC-CCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCC-CCC
Q ss_conf 246650468752257777778500121120126765-5413889885226607898087884799974053354-221
Q gi|254780810|r 294 ANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSR-MDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKS-GTR 369 (423)
Q Consensus 294 ~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~-~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S-~sR 369 (423)
-..+....+++. + -..|.+.|.-+..+++ +..+-.+ -..|+-|.|...-.+....-+|-|.|- +|.
T Consensus 150 r~~l~~l~~~l~------~-~g~Ttll~~e~~~~~~~~~~~~ve---~~~DgvI~L~~~~~~~~~~R~l~I~KmRgs~ 217 (250)
T PRK04328 150 RSIVMQLKRVLA------G-LGCTSIFVSQVSVGERGFGGPGVE---HAVDGIIRLDLDEIDGELKRSLIVWKMRGTK 217 (250)
T ss_pred HHHHHHHHHHHH------H-CCCEEEEEECCCCCCCCCCCCCEE---EEEEEEEEEEEECCCCEEEEEEEEEECCCCC
T ss_conf 999999999998------6-898699997100365666778658---9998999988871399799999999886996
No 78
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.68 E-value=0.00054 Score=45.42 Aligned_cols=206 Identities=20% Similarity=0.267 Sum_probs=108.0
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHHCCEEEECCCCCCHHH
Q ss_conf 889988655102312220487787899999999998611886469999-5087878999999840342782366788889
Q gi|254780810|r 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSVQGEVISSTFDESAAR 241 (423)
Q Consensus 163 ~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~~~~vv~st~d~~~~~ 241 (423)
+.+--++--++=.-..++||||+|||||+.-||+.....+ +.+ .+.-- |.|.+
T Consensus 41 ~~Lrr~i~~~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F-----~~lsAv~sg---vkdlr------------------ 94 (726)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHF-----SSLNAVLAG---VKDLR------------------ 94 (726)
T ss_pred CHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-----EEEECCCCC---HHHHH------------------
T ss_conf 2899999769998278889799999999999988748867-----998562037---79999------------------
Q ss_pred HHHHHHHHHHHHHH-HHHCCCCEEEEEECHHHHHHHHHCC------------CCCCCCCCCCCCCHHHHHHCHHH-----
Q ss_conf 99999999999999-9977992899981638987762001------------36677767775202466504687-----
Q gi|254780810|r 242 HVQVAEMVIAKAKC-LVEYGLDVVILLDSITRLCRAYNVL------------MPSSGKILTGGVDANALQRPKRF----- 303 (423)
Q Consensus 242 ~~~~a~~a~~~a~~-~~e~G~dVll~~DslTR~ArA~~~~------------~~~~g~~~~gg~~~~~l~~~~~~----- 303 (423)
-+++.|+. +...|+..+|++|-|-||-.++... ..++.|-|+=.+-++.+.+...|
T Consensus 95 ------~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~G~i~LIGATTENP~F~vn~ALlSR~~vf~L~~L 168 (726)
T PRK13341 95 ------AEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTVTLIGATTENPYFEVNKALVSRSRLFRLKSL 168 (726)
T ss_pred ------HHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEECHHHHHHCEEEEECCC
T ss_conf ------99999999987459965999862542588789987888606838999704789743642988832346674389
Q ss_pred --------HHCCCCCCCCCC----CEEEE---EEEEC--CCC-CC----CCHHHHHHHHCCCCEEEEEHHHHHCCCCCCC
Q ss_conf --------522577777785----00121---12012--676-55----4138898852266078980878847999740
Q gi|254780810|r 304 --------FGAARNIKEGGS----LTIIG---TALVD--TGS-RM----DEVIFEEFKGTGNSEIVLERKIADKRIFPAM 361 (423)
Q Consensus 304 --------~~~ar~~~~~Gs----~T~~~---t~lve--tg~-~~----d~~i~~~~~~~~d~~i~L~r~la~~~~~PAI 361 (423)
+.+|-+-.+.|- +++-- ..|+. .|| +. =|...+......++.+..+.+.++.
T Consensus 169 ~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~~~~~~i~~~~~~~------ 242 (726)
T PRK13341 169 EDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGVIHINLAIAEE------ 242 (726)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHH------
T ss_conf 99999999999987674325667877598999999997597399999999999970745768834435999999------
Q ss_pred CCCCCCCCCHHHCC---CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 53354221015519---999999999999996126937899999998402899
Q gi|254780810|r 362 DIIKSGTRKEDLLV---ERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKD 411 (423)
Q Consensus 362 d~~~S~sR~~~~l~---~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~~ 411 (423)
|..++ -..+ +++|+..+..+-|-+-.-++-.++-+|...++...+
T Consensus 243 ----~~~~~-~~~YDk~GD~HYd~iSAfiKSiRGSDpDAALywLARMLeaGED 290 (726)
T PRK13341 243 ----SIQQR-AVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGED 290 (726)
T ss_pred ----HHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf ----98566-6056877517889999999986548967899999999975998
No 79
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.66 E-value=0.0012 Score=43.16 Aligned_cols=173 Identities=17% Similarity=0.165 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC--CHHHHHHHHHHH-----CCE
Q ss_conf 136888998865--51023122204877878999999999986118864699995087--878999999840-----342
Q gi|254780810|r 159 DISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE--RPEEVTDMQRSV-----QGE 229 (423)
Q Consensus 159 ~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE--r~~ev~e~~~~~-----~~~ 229 (423)
.||+..+|-+.= |-+|.=.+|.|+||+|||+|+.++|.+....+. .++|+ -+| -++.+.++.... ...
T Consensus 2 sTG~~~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~--~v~Yi-dtE~~~~er~~qi~~~~~~~~~~~i 78 (218)
T cd01394 2 PTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGK--KVAYI-DTEGLSSERFRQIAGDRPERAASSI 78 (218)
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC--EEEEE-ECCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98807899985699878879999899998499999999999863698--69999-6655676999999875366653051
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHCHHHHHCCC
Q ss_conf 78236678888999999999999999997799289998163898776200136677767775202466-50468752257
Q gi|254780810|r 230 VISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANAL-QRPKRFFGAAR 308 (423)
Q Consensus 230 vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l-~~~~~~~~~ar 308 (423)
.+....|-.. ...++...+.+.+.. --|+++||++-+-++.-.-.+.+.. ....+ .....+..-|+
T Consensus 79 ~v~~~~~~~~------~~~~i~~~~~~~~~~-~~lvViDSi~tl~~~e~~~~~~~~~------~~r~l~~~~~~L~~~Ak 145 (218)
T cd01394 79 IVFEPMDFNE------QGRAIQETETFADEK-VDLVVVDSATALYRLELGDDDTTIK------NYRELAKQLTFLLWLAR 145 (218)
T ss_pred EEECCCCHHH------HHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHCCCCCCHHH------HHHHHHHHHHHHHHHHH
T ss_conf 4626787688------999999999764147-7299991404554554068964799------99999999999999987
Q ss_pred CCCCCCCCEEEEEEEE--CCCCCCCCHHH-HHHHHCCCCEEEEEHH
Q ss_conf 7777785001211201--26765541388-9885226607898087
Q gi|254780810|r 309 NIKEGGSLTIIGTALV--DTGSRMDEVIF-EEFKGTGNSEIVLERK 351 (423)
Q Consensus 309 ~~~~~Gs~T~~~t~lv--etg~~~d~~i~-~~~~~~~d~~i~L~r~ 351 (423)
. -.++.+.|-=| +++...-.|+. ..+.-..|.-|+|++.
T Consensus 146 ~----~~~~vil~nqVt~~~~~~~~~p~GG~~LeH~vd~vl~~e~~ 187 (218)
T cd01394 146 K----HDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVILRLEKL 187 (218)
T ss_pred H----CCCEEEEEEEEEEECCCCCCCCCCCHHHHHHCCEEEEEECC
T ss_conf 6----69889999215884577756556720414110289999848
No 80
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.00052 Score=45.51 Aligned_cols=109 Identities=20% Similarity=0.251 Sum_probs=71.2
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHH
Q ss_conf 89988655102312220487787899999999998611886469999508787899999984034278236678888999
Q gi|254780810|r 164 VIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHV 243 (423)
Q Consensus 164 ~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~ 243 (423)
.|.-+.--|.=.-+-..||||+|||||..-||.....+ +. -+.++++--...
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~------f~--------------------~~sAv~~gvkdl-- 89 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA------FE--------------------ALSAVTSGVKDL-- 89 (436)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC------EE--------------------EECCCCCCHHHH--
T ss_conf 38999964998605777899988889999998761776------69--------------------951523467999--
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCC------------CCCCCCCCCCCCCHHHHHHCHHH
Q ss_conf 9999999999999977992899981638987762001------------36677767775202466504687
Q gi|254780810|r 244 QVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVL------------MPSSGKILTGGVDANALQRPKRF 303 (423)
Q Consensus 244 ~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~------------~~~~g~~~~gg~~~~~l~~~~~~ 303 (423)
.-+++.|+.++..|+.++|++|-+-||-.++... ..++.|-|+=.+-++.+.+...|
T Consensus 90 ---r~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf 158 (436)
T COG2256 90 ---REIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVF 158 (436)
T ss_pred ---HHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHEE
T ss_conf ---999999999872588349987225333744565510332488689996267898714038886110415
No 81
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.50 E-value=0.0015 Score=42.54 Aligned_cols=207 Identities=17% Similarity=0.249 Sum_probs=104.6
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHH
Q ss_conf 88998865510231222048778789999999999861188646999950878789999998403427823667888899
Q gi|254780810|r 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARH 242 (423)
Q Consensus 163 ~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~ 242 (423)
+.+.-++--++=.-..++||||+||||++.-||+..... .+. + .++.+--..
T Consensus 26 ~~L~~~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~-----f~~-l--------------------nA~~~gv~d-- 77 (417)
T PRK13342 26 KPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAE-----FEA-L--------------------SAVTSGVKD-- 77 (417)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----EEE-E--------------------ECCCCCHHH--
T ss_conf 199999976999759988969998999999999986898-----899-6--------------------141038899--
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCC------------CCCCCCCCCCCCHHHHHHCHHH-------
Q ss_conf 999999999999999779928999816389877620013------------6677767775202466504687-------
Q gi|254780810|r 243 VQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLM------------PSSGKILTGGVDANALQRPKRF------- 303 (423)
Q Consensus 243 ~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~------------~~~g~~~~gg~~~~~l~~~~~~------- 303 (423)
+ .-.++.|++. ..|+..++++|-+-||-.++...- .++.|-|+=.+.++.+.+...|
T Consensus 78 i---r~ii~~a~~~-~~~~~tilfiDEIHRfnK~QQD~LLp~vE~g~iiLIgATTENP~f~in~aLlSRc~vf~l~~L~~ 153 (417)
T PRK13342 78 L---REVIEEAKQS-RLGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSE 153 (417)
T ss_pred H---HHHHHHHHHH-HCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCHHHHHHHHHEECCCCCH
T ss_conf 9---9999998863-14896599997820058899999987511265699974157922534898985657002058999
Q ss_pred ------HHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEE--E---EEHH--HHHCCCCCCCCCCCCCCCC
Q ss_conf ------5225777777850012112012676554138898852266078--9---8087--8847999740533542210
Q gi|254780810|r 304 ------FGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEI--V---LERK--IADKRIFPAMDIIKSGTRK 370 (423)
Q Consensus 304 ------~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i--~---L~r~--la~~~~~PAId~~~S~sR~ 370 (423)
..++...+.+-.. .-.++|-..+.+-...||.. . |+-. .++....=-.+.++.....
T Consensus 154 ~di~~iL~ral~~e~~~~~----------~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~~~i~~~~~~~~~~~ 223 (417)
T PRK13342 154 EDLEQLLKRALEDERGLGR----------KLELDDEALDALARLADGDARRALNLLELAAAAAAGGEVITLELLEEALQR 223 (417)
T ss_pred HHHHHHHHHHHHHHHCCCC----------CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999999987743378----------877699999999981498599999999999852589973489999999844
Q ss_pred HHHCC---CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 15519---999999999999996126937899999998402899
Q gi|254780810|r 371 EDLLV---ERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKD 411 (423)
Q Consensus 371 ~~~l~---~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~~ 411 (423)
-...+ +++|+..+..+-+-+-.-++-.++=+|...++...+
T Consensus 224 ~~~~yDk~gd~HYd~iSAf~KSiRGSDpdAAlyyLarml~~GED 267 (417)
T PRK13342 224 RAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGED 267 (417)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 10357778634789999999985169954899999999975999
No 82
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=97.47 E-value=0.0012 Score=43.21 Aligned_cols=106 Identities=24% Similarity=0.231 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHH---HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---CCEE
Q ss_conf 321368889988655---1023122204877878999999999986118864699995087878999999840---3427
Q gi|254780810|r 157 NKDISSRVIDLIAPI---GKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---QGEV 230 (423)
Q Consensus 157 p~~~~~~~id~~~pi---g~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---~~~v 230 (423)
...||.-.+|...-+ -+|.=.-|+|++.+|||+++..++...++. ...|+ .||-...-=.+|.+.. ...+
T Consensus 32 ~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~--gg~~~--~iD~E~a~d~~~a~~lGVD~~~l 107 (322)
T pfam00154 32 VISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAA--FIDAEHALDPVYAKKLGVDIDNL 107 (322)
T ss_pred EEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEE--EEEHHHHCCHHHHHHCCCCHHHE
T ss_conf 461580899998758997787089998898777899999999999734--99389--98536605988999809880253
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 82366788889999999999999999977992899981638987
Q gi|254780810|r 231 ISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC 274 (423)
Q Consensus 231 v~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~A 274 (423)
+.+..| ..|-++++++.++..|.-.++++||+.-+.
T Consensus 108 ~~~qpd--------~~Eqal~i~~~li~~~~~~liViDSvaal~ 143 (322)
T pfam00154 108 LVSQPD--------TGEQALEIADMLVRSGAVDLIVVDSVAALV 143 (322)
T ss_pred EEECCC--------HHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 897788--------399999999998537997659982534567
No 83
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.40 E-value=0.0014 Score=42.68 Aligned_cols=107 Identities=24% Similarity=0.243 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHHHH---HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---CCE
Q ss_conf 5321368889988655---1023122204877878999999999986118864699995087878999999840---342
Q gi|254780810|r 156 ENKDISSRVIDLIAPI---GKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---QGE 229 (423)
Q Consensus 156 ~p~~~~~~~id~~~pi---g~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---~~~ 229 (423)
+...||.-.+|...-+ -+|.=.-|+|++.+|||++...++...++.. ..| +.||-...--.+|.+.. ...
T Consensus 34 ~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk~g--g~~--~~iDaE~a~d~~~a~~lGVD~~~ 109 (325)
T cd00983 34 EVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLG--GTV--AFIDAEHALDPVYAKKLGVDLDN 109 (325)
T ss_pred CEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CEE--EEEEHHHCCCHHHHHHCCCCHHH
T ss_conf 34626819999997589966880899988987779999999999987359--839--99962542598999980998467
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 782366788889999999999999999977992899981638987
Q gi|254780810|r 230 VISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC 274 (423)
Q Consensus 230 vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~A 274 (423)
++.+..| ..|-++++++.++..|.--++++||+.-+.
T Consensus 110 l~~~qp~--------~~Eq~l~i~~~li~s~~~dliViDSvaal~ 146 (325)
T cd00983 110 LLISQPD--------TGEQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred EEEECCC--------HHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 5896663--------899999999997515887679981511236
No 84
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.36 E-value=0.0023 Score=41.30 Aligned_cols=123 Identities=21% Similarity=0.311 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE---C
Q ss_conf 20001122343247786532136888998865510231---22204877878999999999986118864699995---0
Q gi|254780810|r 139 LTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQR---SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLL---I 212 (423)
Q Consensus 139 l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr---~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~l---i 212 (423)
+-+-|-++++.-|-. + =-.+-..+.|+-+|++ ..|.|+||+|||+..+.+.+......+++..+++= .
T Consensus 23 L~~~yvP~~l~~Re~--E----i~~l~~~l~~~l~g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~ 96 (394)
T PRK00411 23 LEPDYVPENLPHREE--Q----IEELAFALRPALRGSRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQID 96 (394)
T ss_pred CCCCCCCCCCCCHHH--H----HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 799888998988599--9----9999999999975999984799889999899999999999997468965999969668
Q ss_pred CCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 87878999999840342782366788889999999999999999977992899981638987
Q gi|254780810|r 213 DERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC 274 (423)
Q Consensus 213 gEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~A 274 (423)
...-.=+.++.+.+.+. ..|..-.-..++.-..-+++.+.++.+++++|-+-.+.
T Consensus 97 ~t~~~i~~~i~~~L~~~-------~~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~ 151 (394)
T PRK00411 97 RTRYAILSEIARSLFGH-------PPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLV 151 (394)
T ss_pred CCHHHHHHHHHHHHCCC-------CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 98999999999995699-------89877878999999999986166975899996554020
No 85
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.34 E-value=0.0022 Score=41.34 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHC----CCCCEEEEEECCCC---HHHHHHHHHHH---
Q ss_conf 136888998865--5102312220487787899999999998611----88646999950878---78999999840---
Q gi|254780810|r 159 DISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKN----HPECYLIVLLIDER---PEEVTDMQRSV--- 226 (423)
Q Consensus 159 ~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~----~~~v~~i~~ligEr---~~ev~e~~~~~--- 226 (423)
.||...+|.+.- |-.|+=..|+|+||+|||.+..++|.++... ..+-.++|+ -.|. ++-+.++.+.-
T Consensus 2 sTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyI-dtE~~f~~~Rl~qia~~~~~~ 80 (235)
T cd01123 2 TTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYI-DTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred CCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCCCHHHHHHHHHHHCCC
T ss_conf 8885789965079964787999999999849999999999984247536789629999-536775889999999971347
Q ss_pred -----CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf -----342782366788889999999999999999977992899981638987762
Q gi|254780810|r 227 -----QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAY 277 (423)
Q Consensus 227 -----~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~ 277 (423)
....+....| ..... .........+.++..--|+++||++-+-|..
T Consensus 81 ~~~~l~~i~~~~~~~--~~~l~---~~l~~l~~~l~~~~~v~LvVIDSia~l~r~e 131 (235)
T cd01123 81 PEEVLDNIYVARAYN--SDHQL---QLLEELEAILIESSRIKLVIVDSVTALFRAE 131 (235)
T ss_pred HHHHHCCEEEECCCC--HHHHH---HHHHHHHHHHHCCCCCEEEEEEECHHHHHHH
T ss_conf 245422547963799--99999---9999999987303772399996104555666
No 86
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.29 E-value=0.0021 Score=41.51 Aligned_cols=116 Identities=17% Similarity=0.239 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
Q ss_conf 1122343247786532136888998865-510231-22204877878999999999986118864699995087878999
Q gi|254780810|r 143 YPDKRFNMELNNPENKDISSRVIDLIAP-IGKGQR-SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVT 220 (423)
Q Consensus 143 ~p~~~i~le~~~~~p~~~~~~~id~~~p-ig~gqr-~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~ 220 (423)
.|+|.+....+. --.++..+.- +-.++. +.|.|++|+|||+++..+++....+ -+.++.+.+-. =+..
T Consensus 16 ~pd~~~~y~s~~------h~~al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~---~~~~~~i~~~~-l~~~ 85 (269)
T TIGR03015 16 LPDPDFFYPSKG------HKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE---RVVAAKLVNTR-VDAE 85 (269)
T ss_pred CCCHHHCCCCHH------HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC---CEEEEEECCCC-CCHH
T ss_conf 998454147866------9999999999996489659997299898899999999845934---54899976999-9999
Q ss_pred HHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf 999840342782366788889999999999999999977992899981638
Q gi|254780810|r 221 DMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSIT 271 (423)
Q Consensus 221 e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslT 271 (423)
|+.+.+-...-....+.+.....+. -...-.....+|+.+++++|.--
T Consensus 86 ~ll~~i~~~lg~~~~~~~~~~~~~~---l~~~L~~~~~~g~~~vliIDEAq 133 (269)
T TIGR03015 86 DLLRMVAADFGLETEGRDKAALLRE---LEDFLIEQFAAGKRALLVVDEAQ 133 (269)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHH---HHHHHHHHHHCCCCEEEEEECHH
T ss_conf 9999999985989889899999999---99999999966994699972422
No 87
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=97.25 E-value=0.0014 Score=42.72 Aligned_cols=72 Identities=29% Similarity=0.335 Sum_probs=45.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 22204877878999999999986118864699995087878999999840342782366788889999999999999999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCL 256 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~ 256 (423)
.+++||||+|||||+.-||+.+..+ + ..+-|. . .+-+...+..+
T Consensus 53 ~lf~GPPG~GKTTlAriiAk~~~~~-----~-~~~s~~------------------------~------i~~~~di~~~l 96 (234)
T pfam05496 53 VLLYGPPGLGKTTLANIIANEMGVN-----I-RITSGP------------------------A------LEKPGDLAAIL 96 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-----E-EEECCH------------------------H------HHHHHHHHHHH
T ss_conf 7887899998889999999840875-----3-761426------------------------6------64389999999
Q ss_pred HHCCCCEEEEEECHHHHHHHHHCCCCCC
Q ss_conf 9779928999816389877620013667
Q gi|254780810|r 257 VEYGLDVVILLDSITRLCRAYNVLMPSS 284 (423)
Q Consensus 257 ~e~G~dVll~~DslTR~ArA~~~~~~~~ 284 (423)
...++.-++++|-+-||-.++-++-.|.
T Consensus 97 ~~~~~~~ILFIDEIHr~nK~qqd~Llp~ 124 (234)
T pfam05496 97 TNLEPGDVLFIDEIHRLNRAVEEILYPA 124 (234)
T ss_pred HHCCCCCEEEEECHHHCCHHHHHHCCCC
T ss_conf 8458998899966543587688744553
No 88
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.17 E-value=0.0068 Score=38.18 Aligned_cols=134 Identities=22% Similarity=0.257 Sum_probs=67.6
Q ss_pred EEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEEC----CCCCCCCCCEEECCCCCCCH
Q ss_conf 89999985404770267504548666655604601000012212598799988624----68887630002222556887
Q gi|254780810|r 52 IIGEGVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAP----REGERYFALLKVNAINFDVP 127 (423)
Q Consensus 52 ~~~eGvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~----~~~~~~~~L~rV~~vnG~~~ 127 (423)
..+.-+++++.++...+++. .++.-++-..+.+.+..|+.|+.|.-..... ..|..+..+.+.-.+.-.|-
T Consensus 54 ~~vg~~~~~~~~~~~iv~~~-----~g~~~~v~~~~~~~~~~l~pg~~V~l~~~~~~i~~~l~~~~d~~v~~m~v~e~P~ 128 (390)
T PRK03992 54 LIVATVLEVLDDGRVVVKSS-----TGPQFVVTVSSFVDRDKLKPGARVALNQQTLAIVEVLPSEKDPRVRAMEVIESPD 128 (390)
T ss_pred CEEEEEEEEECCCEEEEEEC-----CCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 48999999837974999978-----9987999657876888879999899853530305646888786211042147999
Q ss_pred HHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88512443000200011223432477865321368889988655102--312220487787899999999998611
Q gi|254780810|r 128 ERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKG--QRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 128 d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~g--qr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
-.|..+...+..- .-. .+-...-..-=++|.-+|-- --.+.+||||+|||.+++.+|..+..+
T Consensus 129 v~~~dIGGl~~~k------~el-----~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~ 193 (390)
T PRK03992 129 VTYEDIGGLDEQI------REV-----REAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 193 (390)
T ss_pred CCHHHHCCHHHHH------HHH-----HHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9846614989999------999-----9999998659899997699999727868989997899999999874888
No 89
>PRK09354 recA recombinase A; Provisional
Probab=97.16 E-value=0.0043 Score=39.45 Aligned_cols=107 Identities=25% Similarity=0.290 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---CCE
Q ss_conf 53213688899886551---023122204877878999999999986118864699995087878999999840---342
Q gi|254780810|r 156 ENKDISSRVIDLIAPIG---KGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---QGE 229 (423)
Q Consensus 156 ~p~~~~~~~id~~~pig---~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---~~~ 229 (423)
+...+|.-.+|...-+| +|.=.-|++|+.+|||+|..+++...++... .| +.||-...--.+|.+.+ ...
T Consensus 39 ~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~Gg--~~--a~iDaE~ald~~~a~~lGVd~d~ 114 (350)
T PRK09354 39 ETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKAGG--TA--AFIDAEHALDPVYAKKLGVDIDN 114 (350)
T ss_pred CEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC--CE--EEEEECCCCCHHHHHHCCCCHHH
T ss_conf 654477178999875899678708999889877799999999999997599--47--99960002798899984977157
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 782366788889999999999999999977992899981638987
Q gi|254780810|r 230 VISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC 274 (423)
Q Consensus 230 vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~A 274 (423)
++.+..| ..|-++++++.++..|.--++++||+--+.
T Consensus 115 llv~qpd--------~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~ 151 (350)
T PRK09354 115 LLVSQPD--------TGEQALEIADALVRSGAVDLIVVDSVAALV 151 (350)
T ss_pred EEEECCC--------HHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 1785686--------799999999999854884189982533457
No 90
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0079 Score=37.72 Aligned_cols=107 Identities=16% Similarity=0.288 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHCCCC---EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHHHCCEEEECCC
Q ss_conf 888998865510231---2220487787899999999998611886469999---5087878999999840342782366
Q gi|254780810|r 162 SRVIDLIAPIGKGQR---SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL---LIDERPEEVTDMQRSVQGEVISSTF 235 (423)
Q Consensus 162 ~~~id~~~pig~gqr---~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~---ligEr~~ev~e~~~~~~~~vv~st~ 235 (423)
-+....+.|+-+|-+ ..|.|++|+|||+.++.+++-.....+.+.++++ -...+-+=.....+.+.
T Consensus 27 ~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~-------- 98 (366)
T COG1474 27 NQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG-------- 98 (366)
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHC--------
T ss_conf 999999999855899860799889998732899999999973315675799951307878799999999826--------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 788889999999999999999977992899981638987762
Q gi|254780810|r 236 DESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAY 277 (423)
Q Consensus 236 d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~ 277 (423)
+.|..+....+.--..-+++..+++.+++++|-+-.+-...
T Consensus 99 -~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~ 139 (366)
T COG1474 99 -KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD 139 (366)
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCC
T ss_conf -89976763268999999977741875999976476541546
No 91
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.10 E-value=0.024 Score=34.51 Aligned_cols=111 Identities=18% Similarity=0.284 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC----CCCEEEEEECCC---CHHHHHHHHHH----
Q ss_conf 136888998865--51023122204877878999999999986118----864699995087---87899999984----
Q gi|254780810|r 159 DISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNH----PECYLIVLLIDE---RPEEVTDMQRS---- 225 (423)
Q Consensus 159 ~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~----~~v~~i~~ligE---r~~ev~e~~~~---- 225 (423)
.||...+|.+.- |-.|+=.-|+|+||+|||.+..++|.+...+. .+-.++|+ =-| .++-+.++...
T Consensus 2 sTG~~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyI-DtE~~f~~~rl~~i~~~~~~~ 80 (226)
T cd01393 2 STGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYI-DTEGAFRPERLVQLAVRFGLD 80 (226)
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEE-ECCCCCCHHHHHHHHHHHCCC
T ss_conf 8874789988579988883999999999989999999999985422116999619999-557753199999998760326
Q ss_pred ----HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf ----034278236678888999999999999999997799289998163898776
Q gi|254780810|r 226 ----VQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRA 276 (423)
Q Consensus 226 ----~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA 276 (423)
.....+....+ .... ...+...+.+.++++=-|+++||++-+-|.
T Consensus 81 ~~~~l~~i~~~~~~~--~e~~----~~~~~~l~~~~~~~~v~liViDSi~al~r~ 129 (226)
T cd01393 81 PEEVLDNIYVARPYN--GEQQ----LEIVEELERIMSSGRVDLVVVDSVAALFRK 129 (226)
T ss_pred HHHHHHHEEEECCCC--HHHH----HHHHHHHHHHHHCCCCEEEEEECCCEECCH
T ss_conf 677643336843799--9999----999999998752478428999322001114
No 92
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=97.08 E-value=0.0068 Score=38.18 Aligned_cols=86 Identities=19% Similarity=0.278 Sum_probs=54.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 02312220487787899999999998611886469999508787899999984034278236678888999999999999
Q gi|254780810|r 173 KGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 173 ~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~ 252 (423)
+.-.++|.|.+|+|||+++..++.++...|..-.+-+.+||=++-+..+|.... ++.....+++....-...++.-+.
T Consensus 37 ~~pH~Lv~G~tGsGKS~~l~~li~sl~~~~~p~~v~l~liD~K~~~~~~~~~~~--h~~~~~~~d~e~~~~~l~~l~~em 114 (202)
T pfam01580 37 KMPHLLIAGATGSGKSTFLNTLILSLAARHSPEEVRLYLIDPKGGELAALEDLP--HLLSAVATDPEDALSALRALVAEM 114 (202)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 688689965899980099999999998737962069999748961267676356--544337689999999999999999
Q ss_pred HHH---HHHCC
Q ss_conf 999---99779
Q gi|254780810|r 253 AKC---LVEYG 260 (423)
Q Consensus 253 a~~---~~e~G 260 (423)
-+| |.+.|
T Consensus 115 ~rR~~ll~~~g 125 (202)
T pfam01580 115 ERRYALLKQLG 125 (202)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999838
No 93
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.03 E-value=0.0053 Score=38.86 Aligned_cols=87 Identities=21% Similarity=0.179 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC-CCHHHHHHHHHHHCCEEEECCCCCCHHHH
Q ss_conf 89988655102312220487787899999999998611886469999508-78789999998403427823667888899
Q gi|254780810|r 164 VIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLID-ERPEEVTDMQRSVQGEVISSTFDESAARH 242 (423)
Q Consensus 164 ~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~lig-Er~~ev~e~~~~~~~~vv~st~d~~~~~~ 242 (423)
.+-.......+.-.++.||||+|||+++..||+.+... ...++++-.+ ......-+......
T Consensus 9 ~l~~~~~~~~~~~ill~GppGtGKT~la~~ia~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 71 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF--------------- 71 (151)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC--CCCEEEEEHHHCCHHHHHHHHHHHH---------------
T ss_conf 99999818799808998999988659999999971213--7982785477704677775760577---------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
Q ss_conf 9999999999999997799289998163898
Q gi|254780810|r 243 VQVAEMVIAKAKCLVEYGLDVVILLDSITRL 273 (423)
Q Consensus 243 ~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ 273 (423)
.........+..+..+|++|.+-++
T Consensus 72 ------~~~~~~~~~~~~~~~vl~iDEi~~l 96 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred ------HHHHHHHHHHHCCCCEEEEECHHHC
T ss_conf ------8898999999769986982016655
No 94
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.95 E-value=0.0041 Score=39.60 Aligned_cols=150 Identities=19% Similarity=0.234 Sum_probs=80.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-----ECCCCHHHHHH-----HHHHHCCEEE--ECCCCCCHHHHHH
Q ss_conf 2220487787899999999998611886469999-----50878789999-----9984034278--2366788889999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-----LIDERPEEVTD-----MQRSVQGEVI--SSTFDESAARHVQ 244 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-----ligEr~~ev~e-----~~~~~~~~vv--~st~d~~~~~~~~ 244 (423)
.=|+||||+|||++.-+.|.+.....+ .++|+ |-.||=+-+.+ |.+-.....| +..|+|-.
T Consensus 15 TQiYGp~G~GKTn~c~~~a~~a~~~Gk--~v~YiDTEGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~----- 87 (223)
T TIGR02237 15 TQIYGPPGSGKTNICLILAVNAARQGK--KVVYIDTEGGLSPERFKQIAEDRALDPERVLSNVIVFEVFDFDEQE----- 87 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHH-----
T ss_conf 898758998678999999999986189--5899962898328999998630588988884153552353567899-----
Q ss_pred HHHHHHHHHHHHHHCC--CCEEEEEECHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEE--
Q ss_conf 9999999999999779--9289998163898776200136-6777677752024665046875225777777850012--
Q gi|254780810|r 245 VAEMVIAKAKCLVEYG--LDVVILLDSITRLCRAYNVLMP-SSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTII-- 319 (423)
Q Consensus 245 ~a~~a~~~a~~~~e~G--~dVll~~DslTR~ArA~~~~~~-~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~-- 319 (423)
-|+..++-|.+.- +-=|+++||+|-|=|+-+.-.- -.. ..-.-.-.-.+.|..-||... +-.+
T Consensus 88 ---~ai~~~~~~~~~~G~~~~LvVvDs~t~~YRle~~~d~nk~~-----~~~~~l~~Ql~~Ll~lArk~~----~AVviT 155 (223)
T TIGR02237 88 ---VAIQKTSKLIDRDGDKADLVVVDSFTALYRLERSDDRNKQI-----SLNRELARQLTLLLSLARKKD----LAVVIT 155 (223)
T ss_pred ---HHHHHHHHHHHCCCCEEEEEEEECCHHHHHHCCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHCC----CCEEEE
T ss_conf ---99999999986068833148881533454202578602567-----999999999999999987649----978997
Q ss_pred ---EEEEECCCCCCCCHHHHHHHHCCCCE
Q ss_conf ---11201267655413889885226607
Q gi|254780810|r 320 ---GTALVDTGSRMDEVIFEEFKGTGNSE 345 (423)
Q Consensus 320 ---~t~lvetg~~~d~~i~~~~~~~~d~~ 345 (423)
|+..-..|++...|+...+..+.-.-
T Consensus 156 NQvy~d~~~gG~~~~~P~GG~~L~h~~K~ 184 (223)
T TIGR02237 156 NQVYTDVNNGGSETLRPLGGHLLEHWSKV 184 (223)
T ss_pred EEEEEEECCCCCCEEEECCCHHHHHHHCE
T ss_conf 11588637797320100331134311021
No 95
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0033 Score=40.23 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
Q ss_conf 32136888998865--5102312220487787899999999998611886469999508787
Q gi|254780810|r 157 NKDISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERP 216 (423)
Q Consensus 157 p~~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~ 216 (423)
...+++--+|-+.- +.+|+=.||=++||.||||||.+++..+.++. .+.|+ -||..
T Consensus 74 Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYV-sGEES 131 (456)
T COG1066 74 RISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYV-SGEES 131 (456)
T ss_pred CCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC---CEEEE-ECCCC
T ss_conf 235781888765367723661799736898779899999999987059---57999-67767
No 96
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=96.89 E-value=0.0015 Score=42.46 Aligned_cols=135 Identities=21% Similarity=0.366 Sum_probs=78.0
Q ss_pred HHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 51244300020001122343247786532136888998865510231222048778789999999999861188646999
Q gi|254780810|r 130 VRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIV 209 (423)
Q Consensus 130 ~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~ 209 (423)
.+-...||+..=.||.+ |.....+-|| ..|--|-+.-+|||||+|||||++.+=|.-+ |.-=+|-
T Consensus 334 ~~Gei~F~~V~F~YP~R----------Pd~~aL~~~~--L~v~PGEtvAlVGPSGAGKSTlf~LLLRFYD---P~~G~il 398 (576)
T TIGR02204 334 VRGEIEFEQVNFAYPAR----------PDQPALDGLN--LTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRIL 398 (576)
T ss_pred CCEEEEECCCCCCCCCC----------CCCHHHCCCC--CEECCCCEEEEECCCCCHHHHHHHHHHHCCC---CCCCEEE
T ss_conf 64027761223258798----------8804232577--2562776588766887627999999986048---8876577
Q ss_pred E----ECCCCHHHHHHHHHHH--CCEEEECCC---------CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 9----5087878999999840--342782366---------788889999999999999999977992899981638987
Q gi|254780810|r 210 L----LIDERPEEVTDMQRSV--QGEVISSTF---------DESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC 274 (423)
Q Consensus 210 ~----ligEr~~ev~e~~~~~--~~~vv~st~---------d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~A 274 (423)
+ +..=.|+|++.-..-| ...+++.+. |.+...=..+|..|. ..| | |++|-
T Consensus 399 LDGvd~r~~dP~~lR~~~ALVpQdp~lFa~Sv~eNIRyGrpDAs~~~V~~AA~aA~-A~E-F-------------I~~LP 463 (576)
T TIGR02204 399 LDGVDIRDLDPADLRARIALVPQDPALFAASVLENIRYGRPDASDEEVEAAARAAH-AHE-F-------------ISALP 463 (576)
T ss_pred ECCCCHHHCCCHHHHHHCCCCCCCCCCCHHCCHHHHCCCCCCCCHHHHHHHHHHHH-HHH-H-------------HHHCC
T ss_conf 46641401680878834440258864102030442135996666689999998754-101-5-------------65188
Q ss_pred HHHHCCCCCCCCCCCCCCCH
Q ss_conf 76200136677767775202
Q gi|254780810|r 275 RAYNVLMPSSGKILTGGVDA 294 (423)
Q Consensus 275 rA~~~~~~~~g~~~~gg~~~ 294 (423)
+-|..--+=-|-.+|||=-.
T Consensus 464 ~GY~T~LGERGv~LSGGQrQ 483 (576)
T TIGR02204 464 EGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred CCCCCCCCCCCCCCCCHHHH
T ss_conf 75467655443026742468
No 97
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.85 E-value=0.0037 Score=39.94 Aligned_cols=108 Identities=23% Similarity=0.388 Sum_probs=66.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 312220487787899999999998611886469999-5087878999999840342782366788889999999999999
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKA 253 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a 253 (423)
.-.+.+||.|+|||-|++.+|+-+..-+.-+.+-.+ =.|=-|+.|-.+...+ +-++.+| +++|
T Consensus 110 sNILliGPTG~GKTlla~tLAk~l~vPF~iaDAT~lTEaGYVGeDVE~ii~~L---lq~Ad~d-------------ve~A 173 (411)
T PRK05342 110 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKL---LQAADYD-------------VEKA 173 (411)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECEECCCCCCCCCHHHHHHHH---HHHCCCC-------------HHHH
T ss_conf 53899899997788999999998699989986120012674560799999999---9982888-------------9988
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHCHHHHHCCCCC
Q ss_conf 9999779928999816389877620013667776777-52024665046875225777
Q gi|254780810|r 254 KCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTG-GVDANALQRPKRFFGAARNI 310 (423)
Q Consensus 254 ~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~g-g~~~~~l~~~~~~~~~ar~~ 310 (423)
+ .=.+++|-+-+.||... .++.+|-.|| |+..+.| |.+.|.--++
T Consensus 174 e-------~GIV~IDEIDKIarks~--~~s~trDVSgEGVQqaLL---kiiEGt~v~v 219 (411)
T PRK05342 174 Q-------RGIVYIDEIDKIARKSE--NPSITRDVSGEGVQQALL---KILEGTVASV 219 (411)
T ss_pred H-------CCEEEEEEHHHHHHCCC--CCCCCCCCCCHHHHHHHH---HHHCCCEECC
T ss_conf 3-------68288850234542478--888877765124899999---9875871411
No 98
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.018 Score=35.39 Aligned_cols=114 Identities=20% Similarity=0.223 Sum_probs=70.1
Q ss_pred CCCCCHHHHHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECC-CCHHHHHHHHHHHCCEE
Q ss_conf 65321368889988655--102312220487787899999999998611886469999-508-78789999998403427
Q gi|254780810|r 155 PENKDISSRVIDLIAPI--GKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LID-ERPEEVTDMQRSVQGEV 230 (423)
Q Consensus 155 ~~p~~~~~~~id~~~pi--g~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-lig-Er~~ev~e~~~~~~~~v 230 (423)
.+...||...+|....= -+|.=.-||+|+++|||++..+++-+.+.... .+++. .-+ =+|+....+.......+
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~--~a~fIDtE~~l~p~r~~~l~~~~~d~l 116 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGG--KAAFIDTEHALDPERAKQLGVDLLDNL 116 (279)
T ss_pred CCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf 660165505578774688655358998468876546689999888653798--089995899989999999887542153
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCEEEEEECHHHHHHHHH
Q ss_conf 823667888899999999999999999779--928999816389877620
Q gi|254780810|r 231 ISSTFDESAARHVQVAEMVIAKAKCLVEYG--LDVVILLDSITRLCRAYN 278 (423)
Q Consensus 231 v~st~d~~~~~~~~~a~~a~~~a~~~~e~G--~dVll~~DslTR~ArA~~ 278 (423)
+.+..+.. ..+.. +++.+...+ .==|+++||+|-+-|+.-
T Consensus 117 ~v~~~~~~-e~q~~-------i~~~~~~~~~~~i~LvVVDSvaa~~r~~~ 158 (279)
T COG0468 117 LVSQPDTG-EQQLE-------IAEKLARSGAEKIDLLVVDSVAALVRAEE 158 (279)
T ss_pred EEECCCCH-HHHHH-------HHHHHHHHCCCCCCEEEEECCCCCCHHHH
T ss_conf 68668977-99999-------99999875468878899825743463655
No 99
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.042 Score=32.98 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=80.7
Q ss_pred EEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEE----CCCCCCCCCCEEECCCCCCC
Q ss_conf 48999998540477026750454866665560460100001221259879998862----46888763000222255688
Q gi|254780810|r 51 EIIGEGVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRA----PREGERYFALLKVNAINFDV 126 (423)
Q Consensus 51 ~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~----~~~~~~~~~L~rV~~vnG~~ 126 (423)
+..+.-++|++.++.+.+.+ ..++.=++-..+.+.+..|++|+.|.-.... ...|.....+..+-.+.-.|
T Consensus 72 pl~vg~v~e~id~~~~iVks-----~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~P 146 (406)
T COG1222 72 PLIVGTVLEVLDDGRAIVKS-----STGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKP 146 (406)
T ss_pred CCEEEEEEEECCCCEEEEEE-----CCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEECCCCCCCHHHEEEECCCC
T ss_conf 95689999981786189970-----7997188734687698786998889985776145661787557620200112589
Q ss_pred HHHHHCCCCHHHC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 7885124430002-0001122343247786532136888998865510231--222048778789999999999861188
Q gi|254780810|r 127 PERVRNKIHFDNL-TPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQR--SLIVAPPRTGKTILLQNIAHSIKKNHP 203 (423)
Q Consensus 127 ~d~~~~~~~f~~l-~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr--~~i~~~~~~gkt~ll~~ia~~~~~~~~ 203 (423)
-.....+...+.. .=++ +.-.+-..-=++|--+|--+- ++..||||+|||.|++..|+..++++
T Consensus 147 dvtY~dIGGL~~Qi~Eir------------E~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF- 213 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIR------------EVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF- 213 (406)
T ss_pred CCCHHHCCCHHHHHHHHH------------HHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEE-
T ss_conf 878653358899999999------------9840336688899974999997127668999758899999872058669-
Q ss_pred CCEEEEE------ECCCCHHHHHHHHHH
Q ss_conf 6469999------508787899999984
Q gi|254780810|r 204 ECYLIVL------LIDERPEEVTDMQRS 225 (423)
Q Consensus 204 ~v~~i~~------ligEr~~ev~e~~~~ 225 (423)
.-++. -|||-+|=|+|+-+.
T Consensus 214 --IrvvgSElVqKYiGEGaRlVRelF~l 239 (406)
T COG1222 214 --IRVVGSELVQKYIGEGARLVRELFEL 239 (406)
T ss_pred --EEECCHHHHHHHHCCCHHHHHHHHHH
T ss_conf --99421999999834116999999998
No 100
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.83 E-value=0.0074 Score=37.91 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=33.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 2220487787899999999998611886469999508
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLID 213 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~lig 213 (423)
..|.|++|.|||.||+.|++.+.+++|+..++|+-..
T Consensus 148 LfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae 184 (447)
T PRK00149 148 LFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSE 184 (447)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHH
T ss_conf 5897799887889999999999985899728995499
No 101
>pfam00931 NB-ARC NB-ARC domain.
Probab=96.83 E-value=0.0054 Score=38.84 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=53.3
Q ss_pred HHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHHHHH-HCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHH
Q ss_conf 8998865510231-22204877878999999999986-118864699995087878999999840342782366788889
Q gi|254780810|r 164 VIDLIAPIGKGQR-SLIVAPPRTGKTILLQNIAHSIK-KNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAAR 241 (423)
Q Consensus 164 ~id~~~pig~gqr-~~i~~~~~~gkt~ll~~ia~~~~-~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~ 241 (423)
++..+.---...+ .+|+|.+|+|||||++.+.+... +++-+.++++. +++.. ...+..+.+...+-....+.....
T Consensus 8 i~~~L~~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~-vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~ 85 (285)
T pfam00931 8 LIEKLLEMSENLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVV-VSKTY-TEFRLQKDILQELGLDDSDWVEKN 85 (285)
T ss_pred HHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEE-ECCCC-CHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999864898953999889995639999999971655650598389999-79766-689999999998566654555578
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
Q ss_conf 9999999999999999779928999816389
Q gi|254780810|r 242 HVQVAEMVIAKAKCLVEYGLDVVILLDSITR 272 (423)
Q Consensus 242 ~~~~a~~a~~~a~~~~e~G~dVll~~DslTR 272 (423)
...++....+++ +++..||++|++-.
T Consensus 86 ---~~~l~~~l~~~L--~~kr~LiVLDDVw~ 111 (285)
T pfam00931 86 ---ESELAVKIKEAL--LRKRFLLVLDDVWE 111 (285)
T ss_pred ---HHHHHHHHHHHH--CCCCEEEEECCCCC
T ss_conf ---999999999997--27966999638887
No 102
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.78 E-value=0.001 Score=43.58 Aligned_cols=214 Identities=18% Similarity=0.286 Sum_probs=103.5
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 24430002000112234324778653213688899886551023122204877878999999999986118864699995
Q gi|254780810|r 132 NKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLL 211 (423)
Q Consensus 132 ~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~l 211 (423)
....|++.+--||..+..++ |.=..|-+|++..|+|++|+|||||++-+.+-..-.. =. ++
T Consensus 333 g~I~~~~VsF~Y~~~~~vL~--------------~isl~i~~Ge~vaiVG~SGsGKSTL~~LL~gly~p~~---G~--I~ 393 (585)
T PRK13657 333 GLVEFDDVSFSYDNSRQAVE--------------DVSFEAKPGQTVAIVGPTGAGKSTLINLLHRVFDPQS---GR--IR 393 (585)
T ss_pred CEEEEEEEEEECCCCCCCCC--------------CCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCC---CC--EE
T ss_conf 72999987986799987536--------------7038975998899988989869999999860157887---96--75
Q ss_pred CCCCH-HH--HHHHHHHH--------------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 08787-89--99999840--------------342782366788889999999999999999977992899981638987
Q gi|254780810|r 212 IDERP-EE--VTDMQRSV--------------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC 274 (423)
Q Consensus 212 igEr~-~e--v~e~~~~~--------------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~A 274 (423)
+|..+ ++ ..++.+.+ +..+....-|.+...-..++..+. +.|-+.++-
T Consensus 394 idg~di~~i~~~~lR~~i~~V~Q~~~LF~gTI~eNI~~g~~~~sd~ei~~a~~~a~---------------~~~~I~~lp 458 (585)
T PRK13657 394 IDGTDIRTVTRASLRRNIGVVFQEAGLFNRSIEDNLRVGRPDATDEEMRAAAERAQ---------------ALDFIERKE 458 (585)
T ss_pred ECCEECHHCCHHHHHHHCCEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC---------------CHHHHHHCC
T ss_conf 89896101689999852522166763547659988752799998688999999843---------------279997175
Q ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEE--EEEEECCCCCCCCHHHHHHHHCCC--CEEEEEH
Q ss_conf 762001366777677752024665046875225777777850012--112012676554138898852266--0789808
Q gi|254780810|r 275 RAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTII--GTALVDTGSRMDEVIFEEFKGTGN--SEIVLER 350 (423)
Q Consensus 275 rA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~--~t~lvetg~~~d~~i~~~~~~~~d--~~i~L~r 350 (423)
..|+......|..+|||--.. +.. ||..=..-.+-++ +|.=+|+ .-..-|.++++.... .-|+-+.
T Consensus 459 ~G~dT~vge~G~~LSGGQrQR-ial-------ARAll~~p~IliLDEaTSaLD~--~tE~~i~~~l~~~~~~~T~iiIaH 528 (585)
T PRK13657 459 DGYDTVVGERGRQLSGGERQR-LAI-------ARALLKDPPILILDEATSALDA--ETEAKVKAALDEVMKGRTTFIIAH 528 (585)
T ss_pred CCCCCCCCCCCCCCCHHHHHH-HHH-------HHHHHCCCCEEEEECCCCCCCH--HHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 666680137888689999999-999-------9999469898998688768999--999999999999848998999606
Q ss_pred HHHHCCCCCCCCCCCCCCC-----CHHHCCCHHHHHHHHHHHHH
Q ss_conf 7884799974053354221-----01551999999999999999
Q gi|254780810|r 351 KIADKRIFPAMDIIKSGTR-----KEDLLVERQDLQKVFMLRRI 389 (423)
Q Consensus 351 ~la~~~~~PAId~~~S~sR-----~~~~l~~~~~~~~~~~~r~~ 389 (423)
.|+--...--|=++.-|-- .+|++-....+...|+....
T Consensus 529 Rlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~L~~~Q~~ 572 (585)
T PRK13657 529 RLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALARAQFM 572 (585)
T ss_pred CHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHHH
T ss_conf 88889969999999898899972799998689979999999711
No 103
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=96.77 E-value=0.015 Score=35.95 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=52.6
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE--ECCCCHHHHHHHHHHHC-----CEEEECCCCCCHHHHHH
Q ss_conf 102312220487787899999999998611886469999--50878789999998403-----42782366788889999
Q gi|254780810|r 172 GKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL--LIDERPEEVTDMQRSVQ-----GEVISSTFDESAARHVQ 244 (423)
Q Consensus 172 g~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~--ligEr~~ev~e~~~~~~-----~~vv~st~d~~~~~~~~ 244 (423)
|..+=..|.|+.++|||+|++..++.....+ ..+++. +-......+.+|..... ...+-......+. .
T Consensus 18 ~~~~~ivi~G~RR~GKTsLi~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~ 92 (223)
T pfam01637 18 GTYPIIVVYGPRRCGKTALLREFLEELRELG--YRVIYYDPLRREFEEKLDRFEEAKRLAEALGDALPKIGIAKSK---L 92 (223)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCC--CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---C
T ss_conf 9971899986887879999999998633468--5289995144437999998888899999987651233222112---0
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 999999999999977992899981638987
Q gi|254780810|r 245 VAEMVIAKAKCLVEYGLDVVILLDSITRLC 274 (423)
Q Consensus 245 ~a~~a~~~a~~~~e~G~dVll~~DslTR~A 274 (423)
......+..+++.+.|++++|++|-...++
T Consensus 93 ~~~~l~~~~~~l~~~~~~~iiviDEfq~l~ 122 (223)
T pfam01637 93 AFLSLTLLFELLKRKGKKIAIIIDEVQYAI 122 (223)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 788999999999855996599970167764
No 104
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.74 E-value=0.028 Score=34.14 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=68.7
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 02312220487787899999999998611886469999508787899999984034278236678888999999999999
Q gi|254780810|r 173 KGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 173 ~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~ 252 (423)
+|.-.-+.|-||+|||||...+.+.+..... .+++|=|. ++++.. +..+-+...|...+.-....
T Consensus 6 kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~---~~~~LDGD---~lR~~~---------~~~gfs~~~R~~n~~r~~~l 70 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYS---NVIYLDGD---ELREIF---------GHSGYDKESRIEMALKRAKL 70 (176)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCC---CEEEECCH---HHHHHH---------CCCCCCHHHHHHHHHHHHHH
T ss_conf 8679997899999899999999999997599---77998868---999873---------65898999999999999999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHC
Q ss_conf 999997799289998163898776200
Q gi|254780810|r 253 AKCLVEYGLDVVILLDSITRLCRAYNV 279 (423)
Q Consensus 253 a~~~~e~G~dVll~~DslTR~ArA~~~ 279 (423)
|+.+.++|-.|++=.=|..+-.|+++-
T Consensus 71 ak~l~~~g~~vIvs~isp~~~~R~~~R 97 (176)
T PRK05541 71 AAFLADQGMIVIVTTISMFNEIYAYNR 97 (176)
T ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHH
T ss_conf 999864698036752279899999999
No 105
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.0018 Score=41.91 Aligned_cols=48 Identities=38% Similarity=0.511 Sum_probs=33.5
Q ss_pred HCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCC-CEEEEEECCCCHHHH
Q ss_conf 10231-2220487787899999999998611886-469999508787899
Q gi|254780810|r 172 GKGQR-SLIVAPPRTGKTILLQNIAHSIKKNHPE-CYLIVLLIDERPEEV 219 (423)
Q Consensus 172 g~gqr-~~i~~~~~~gkt~ll~~ia~~~~~~~~~-v~~i~~ligEr~~ev 219 (423)
+.|-- .+|++||++||||+|.+||+.+...... -..-++.||||.|=.
T Consensus 134 ~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIa 183 (308)
T COG3854 134 QNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA 183 (308)
T ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHH
T ss_conf 43722469965998870779999999863151126773289971500430
No 106
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.71 E-value=0.025 Score=34.41 Aligned_cols=219 Identities=17% Similarity=0.255 Sum_probs=96.1
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCH--------------------HHHHHHHHHH
Q ss_conf 88655102312220487787899999999998611886469999508787--------------------8999999840
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERP--------------------EEVTDMQRSV 226 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~--------------------~ev~e~~~~~ 226 (423)
.-..|-+|...+|+|+.|+|||||++.|..-+.-. ...+ .+...++.. ..+.++.+.+
T Consensus 26 vsl~I~~GE~v~IiG~nGsGKSTL~k~l~Gll~P~-~G~V-~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~v 103 (304)
T PRK13651 26 VSTEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD-TGTI-EWIYFDEKNKEKKKVVEDPVIKLKFRKKLKKIKEIRRRV 103 (304)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCEE-EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCE
T ss_conf 05798599899998799985999999996699988-7169-994245434554311343022134566666689877337
Q ss_pred CCEEEECCC----CCCHHHHHHH--------HHHHHHHHHHHHH-CCCCEEEEEEC----HH-----HHHHHHHCCCCC-
Q ss_conf 342782366----7888899999--------9999999999997-79928999816----38-----987762001366-
Q gi|254780810|r 227 QGEVISSTF----DESAARHVQV--------AEMVIAKAKCLVE-YGLDVVILLDS----IT-----RLCRAYNVLMPS- 283 (423)
Q Consensus 227 ~~~vv~st~----d~~~~~~~~~--------a~~a~~~a~~~~e-~G~dVll~~Ds----lT-----R~ArA~~~~~~~- 283 (423)
+.|+-..- ......-+.- ..-+-++++...+ -|-+- =+.|. |+ |.|-|--.+.-|
T Consensus 104 -G~vfQ~p~~ql~~~tV~e~i~fg~~~~g~~~~e~~~rv~~~l~~vgL~~-~~~~~~p~~LSGGqkqRVaIA~~La~~P~ 181 (304)
T PRK13651 104 -GVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLPE-EFLQKSPFELSGGQKRRVALAGILAMEPD 181 (304)
T ss_pred -EEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH-HHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf -9995178545565059999999999849999999999999999869985-67518954289999999999998845999
Q ss_pred ---CCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCH--HHHHHHHCCCCEEEEEHHHHHCCCC
Q ss_conf ---77767775202466504687522577777785001211201267655413--8898852266078980878847999
Q gi|254780810|r 284 ---SGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEV--IFEEFKGTGNSEIVLERKIADKRIF 358 (423)
Q Consensus 284 ---~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~--i~~~~~~~~d~~i~L~r~la~~~~~ 358 (423)
.-| |+.|.||..-...-.++..- .+.|- |+ ++-| -||++. ++|-+.=.-+|.|+.+-.-
T Consensus 182 iLlLDE-PTagLDp~~~~~i~~~l~~L---~~~G~-TV----I~vT-Hdm~~v~~~adRvivl~~G~Iv~~G~p------ 245 (304)
T PRK13651 182 FLVFDE-PTAGLDPQGVKEILEIFDTL---NKKGK-TI----ILVT-HDLDNVLEWTKRTIFFKDGKIIKDGDT------ 245 (304)
T ss_pred EEEECC-CCCCCCHHHHHHHHHHHHHH---HHCCC-EE----EEEC-CCHHHHHHHCCEEEEEECCEEEEECCH------
T ss_conf 999729-86658989999999999999---97799-99----9986-789999997999999989989998688------
Q ss_pred CCCCCCCCCCCCHH-HCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 74053354221015-51999999999999999612693789999999840
Q gi|254780810|r 359 PAMDIIKSGTRKED-LLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLK 407 (423)
Q Consensus 359 PAId~~~S~sR~~~-~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~ 407 (423)
-++......+.. .|-.|.-.+.+..|++.=-..+.....+.+.+.+.
T Consensus 246 --~evf~~~~~l~~~~l~~P~~~~l~~~L~~~g~~~~~~~t~~e~~~~~~ 293 (304)
T PRK13651 246 --YEILNDEKFLIENKMLPPKLLNFVNKLIKKGIPISKVTSIDELASEIN 293 (304)
T ss_pred --HHHHCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf --998679889987799998199999999976999998688999999999
No 107
>KOG0057 consensus
Probab=96.67 E-value=0.0032 Score=40.35 Aligned_cols=142 Identities=26% Similarity=0.335 Sum_probs=92.0
Q ss_pred CCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 88788512443000200011223432477865321368889988655102312220487787899999999998611886
Q gi|254780810|r 125 DVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPE 204 (423)
Q Consensus 125 ~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~ 204 (423)
.|++..+.-+.|++....|++.+..++. + -..|.+|-+.+|+|++|+||||++..+-+--. +..
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~~k~~iL~g-v-------------sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG 406 (591)
T KOG0057 343 LPIELFGGSIEFDDVHFSYGPKRKVLKG-V-------------SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSG 406 (591)
T ss_pred CCCCCCCCCEEEEEEEEEECCCCCEECC-E-------------EEEECCCCEEEEECCCCCCHHHHHHHHHHHHC--CCC
T ss_conf 7864689827998657874797740036-0-------------58864897898978999878899999999744--688
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCE---EE--ECCCCCCHHHHHH------HHHHHHHHHHHHHHCCCCEEEEEECHHHH
Q ss_conf 4699995087878999999840342---78--2366788889999------99999999999997799289998163898
Q gi|254780810|r 205 CYLIVLLIDERPEEVTDMQRSVQGE---VI--SSTFDESAARHVQ------VAEMVIAKAKCLVEYGLDVVILLDSITRL 273 (423)
Q Consensus 205 v~~i~~ligEr~~ev~e~~~~~~~~---vv--~st~d~~~~~~~~------~a~~a~~~a~~~~e~G~dVll~~DslTR~ 273 (423)
-++ .=|+.=.+++ .++++.. |- ..-||++-..-++ .-+-+.+.||++ | +-|+++||
T Consensus 407 ~I~---IdG~dik~~~--~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a---~-----~hd~i~~l 473 (591)
T KOG0057 407 SIL---IDGQDIKEVS--LESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRA---G-----LHDVISRL 473 (591)
T ss_pred CEE---ECCEEHHHHC--HHHHHHHEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHC---C-----CHHHHHHC
T ss_conf 599---9873376507--577652216767766430065998863289876889999999972---8-----37888736
Q ss_pred HHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 7762001366777677752024
Q gi|254780810|r 274 CRAYNVLMPSSGKILTGGVDAN 295 (423)
Q Consensus 274 ArA~~~~~~~~g~~~~gg~~~~ 295 (423)
-.-|-.....-|..+|||--..
T Consensus 474 ~~GY~T~VGerG~~LSGGekQr 495 (591)
T KOG0057 474 PDGYQTLVGERGLMLSGGEKQR 495 (591)
T ss_pred CCCCHHHHHHCCCCCCCCHHHH
T ss_conf 6630326753444256406789
No 108
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.59 E-value=0.023 Score=34.63 Aligned_cols=126 Identities=28% Similarity=0.300 Sum_probs=79.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC-CHHH---HHHHHHHHCCEEEE-CCCCCCHHHHHHHHHH
Q ss_conf 23122204877878999999999986118864699995087-8789---99999840342782-3667888899999999
Q gi|254780810|r 174 GQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE-RPEE---VTDMQRSVQGEVIS-STFDESAARHVQVAEM 248 (423)
Q Consensus 174 gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE-r~~e---v~e~~~~~~~~vv~-st~d~~~~~~~~~a~~ 248 (423)
---.+++|--|+||||-+..+|+...+++..|.+ +.-|- |.-- ...|.+.+...||. ....+|+. +++-
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll--aA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAa----VafD 212 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL--AAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAA----VAFD 212 (340)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE--EECCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHH----HHHH
T ss_conf 6799999348886371799999999978986999--823347899999999999995992782599998089----9999
Q ss_pred HHHHHHHHHHCCCCEEEE------------EECHHHHHHHHHCCCC-CCCCCC-C--CCCCHHHHHHCHHHHHCCC
Q ss_conf 999999999779928999------------8163898776200136-677767-7--7520246650468752257
Q gi|254780810|r 249 VIAKAKCLVEYGLDVVIL------------LDSITRLCRAYNVLMP-SSGKIL-T--GGVDANALQRPKRFFGAAR 308 (423)
Q Consensus 249 a~~~a~~~~e~G~dVll~------------~DslTR~ArA~~~~~~-~~g~~~-~--gg~~~~~l~~~~~~~~~ar 308 (423)
|++.|+ .+|.||||+ ||.|.+..|.-.-..+ +..|.+ . .-.-.+++...+.|-++..
T Consensus 213 Ai~~Ak---ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~ 285 (340)
T COG0552 213 AIQAAK---ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG 285 (340)
T ss_pred HHHHHH---HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 999999---7699999996755445736689999999998464568998428999775647568999999987528
No 109
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.56 E-value=0.015 Score=35.92 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=36.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE--CCCCHHHHHHHHHHH
Q ss_conf 6551023122204877878999999999986118864699995--087878999999840
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLL--IDERPEEVTDMQRSV 226 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~l--igEr~~ev~e~~~~~ 226 (423)
+.|-+|+..+|+|++|+|||||++.++.-+.-..-.+.+--.. -+.+...+.++.+.+
T Consensus 15 l~i~~Ge~vaiiG~sGsGKSTLl~~l~GLl~P~~G~i~~~g~~i~~~~~~~~~~~lr~~v 74 (276)
T PRK13634 15 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLLKPTKGTVTIGERVITAGKKNKKLKPLRKKV 74 (276)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCHHHHHHHHHCE
T ss_conf 799899899999999969999999997499988749999999886888666689987326
No 110
>smart00357 CSP Cold shock protein domain. RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.
Probab=96.53 E-value=0.0063 Score=38.40 Aligned_cols=55 Identities=45% Similarity=0.789 Sum_probs=41.6
Q ss_pred EEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCC--CCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 998540477026750454866665560460100001--221259879998862468887630
Q gi|254780810|r 56 GVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKS--FSLKTGDTVEGSIRAPREGERYFA 115 (423)
Q Consensus 56 GvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~--f~Lr~GD~V~g~~r~~~~~~~~~~ 115 (423)
|++...++||||++..+ +..|+|+..+.+.. ..|++||.|+........+.+..+
T Consensus 2 G~Vk~f~kGfGFI~~~~-----g~~DvFvH~s~i~~~~~~l~~Gd~V~f~v~~~~~~~~~~A 58 (64)
T smart00357 2 GVVKWFNKGFGFIRPDD-----GGKDVFVHPSQIQGGLKSLREGDEVEFKVVSPRGGGKPEA 58 (64)
T ss_pred CEEEEEECCEEEEEECC-----CCCCEEEEHHHHCCCCCCCCCCCEEEEEEEECCCCCCCEE
T ss_conf 47969828448886189-----9940999869954677744758789999998899998441
No 111
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.52 E-value=0.0021 Score=41.52 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=45.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCC--CCC-EEEEEECCCCH--H--HHHHHHHHHCCEEEECCCCCCHHHHHHHHH
Q ss_conf 3122204877878999999999986118--864-69999508787--8--999999840342782366788889999999
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKNH--PEC-YLIVLLIDERP--E--EVTDMQRSVQGEVISSTFDESAARHVQVAE 247 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~--~~v-~~i~~ligEr~--~--ev~e~~~~~~~~vv~st~d~~~~~~~~~a~ 247 (423)
||.+|.|+||+||||+++.+|....... ++. .++++-.-+.. . -+.|+....... . ..+.
T Consensus 1 r~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~ll~~~~~~----~-~~~~-------- 67 (165)
T pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWPE----P-AAPV-------- 67 (165)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCCC----C-CCCH--------
T ss_conf 98999827989899999999999986984369728999995670777668999999987677----4-5763--------
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 999999999977992899981638987
Q gi|254780810|r 248 MVIAKAKCLVEYGLDVVILLDSITRLC 274 (423)
Q Consensus 248 ~a~~~a~~~~e~G~dVll~~DslTR~A 274 (423)
.+.-.+...+-..||+++|.+--++
T Consensus 68 --~~~~~~~~~~~~k~L~ilDGlDE~~ 92 (165)
T pfam05729 68 --SEVWAVILELPERVLLILDGLDELA 92 (165)
T ss_pred --HHHHHHHHHCCCCEEEEECCHHHHC
T ss_conf --7899999839772899964845514
No 112
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.44 E-value=0.019 Score=35.24 Aligned_cols=204 Identities=20% Similarity=0.264 Sum_probs=89.7
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC--CHHHHHHHHHHHCCEEEECC----CCCCHH
Q ss_conf 886551023122204877878999999999986118864699995087--87899999984034278236----678888
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE--RPEEVTDMQRSVQGEVISST----FDESAA 240 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE--r~~ev~e~~~~~~~~vv~st----~d~~~~ 240 (423)
.-+.|-+|...+|+|+.|+|||||++.|+--+....-.+.+--..++. +..++.++.+.+ +.|+-.. |..+..
T Consensus 25 Isl~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~p~~G~V~~~~~~i~~~~~~~~~~~~~~~v-G~VfQ~p~~ql~~~tV~ 103 (288)
T PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKV-GVVFQFPESQLFEETVL 103 (288)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHHHCE-EEEEECCCCCCCHHHHH
T ss_conf 36798599899999999947999999997488888856999999856877354479877517-99997773202433699
Q ss_pred HHHHHHH--HH--HHHHHHHHHCCCCEEEEEECH-------------HHHHHHHHCCCCC----CCCCCCCCCCHHHHHH
Q ss_conf 9999999--99--999999997799289998163-------------8987762001366----7776777520246650
Q gi|254780810|r 241 RHVQVAE--MV--IAKAKCLVEYGLDVVILLDSI-------------TRLCRAYNVLMPS----SGKILTGGVDANALQR 299 (423)
Q Consensus 241 ~~~~~a~--~a--~~~a~~~~e~G~dVll~~Dsl-------------TR~ArA~~~~~~~----~g~~~~gg~~~~~l~~ 299 (423)
.-+.-.. .. -+.++..++.--+.+=+.|.+ -|.|-|--.+.-| .-| |+.|.||..-..
T Consensus 104 e~vafg~~n~g~~~~e~~~~v~~~l~~vgl~d~~~~r~p~~LSGGqkqRvaiA~aLa~~P~vLlLDE-PTs~LDp~~~~~ 182 (288)
T PRK13643 104 KDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE-PTAGLDPKARIE 182 (288)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHH
T ss_conf 9999899986999899999999999975993667527976399999999999999974999999958-855589999999
Q ss_pred CHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCH--HHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHH-CCC
Q ss_conf 4687522577777785001211201267655413--8898852266078980878847999740533542210155-199
Q gi|254780810|r 300 PKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEV--IFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDL-LVE 376 (423)
Q Consensus 300 ~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~--i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~-l~~ 376 (423)
...++..- .+.| .|+ ++-| -||++. ++|.+.=.-+|+|+.+-.-.+ +|--.+. +... +-.
T Consensus 183 i~~ll~~l---~~~G-~Ti----I~vt-Hd~~~v~~~adrvivl~~G~Iv~~Gtp~e--vf~~~~~------l~~~~l~~ 245 (288)
T PRK13643 183 MMQLFESI---HQSG-QTV----VLVT-HLMDDVADYADYVYLLEKGHIISCGTPSD--VFQEVDF------LKAHELGV 245 (288)
T ss_pred HHHHHHHH---HHCC-CEE----EEEC-CCHHHHHHHCCEEEEEECCEEEEECCHHH--HHCCHHH------HHHCCCCC
T ss_conf 99999999---9539-999----9986-08999999799999998999999878899--8669999------99769999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780810|r 377 RQDLQKVFMLRRI 389 (423)
Q Consensus 377 ~~~~~~~~~~r~~ 389 (423)
|.-.+.++.|++.
T Consensus 246 P~~~~l~~~L~~~ 258 (288)
T PRK13643 246 PKATHFADQLQKT 258 (288)
T ss_pred CHHHHHHHHHHHC
T ss_conf 8499999999976
No 113
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.41 E-value=0.0093 Score=37.26 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=28.0
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 886551023122204877878999999999986
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
.-+.|-+|+..+|+|++|+|||||++.|+.-..
T Consensus 23 vsl~i~~GE~vaivG~nGsGKSTL~~~l~Gll~ 55 (276)
T PRK13650 23 VSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE 55 (276)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 587998998999999999879999999973889
No 114
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=96.39 E-value=0.049 Score=32.53 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=77.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 02312220487787899999999998611886469999508787899999984034278236678888999999999999
Q gi|254780810|r 173 KGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 173 ~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~ 252 (423)
||--.-|.|-||+|||||...+...+...... +++|=|. ++++ .+....+-+...|...+......
T Consensus 1 kG~viW~TGLsGsGKTTlA~~l~~~L~~~~~~---~~~LDGD---~~R~--------~l~~dlgys~~~R~~n~~r~~~l 66 (157)
T pfam01583 1 RGCTVWFTGLSGSGKSTIANALERKLFAQGIS---VYVLDGD---NVRH--------GLNKDLGFSEEDRTENIRRIAEV 66 (157)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC---EEEECCH---HHHC--------CCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98899988989999999999999999975997---7997688---7750--------12577798989999999999999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCH--HHH--HHCHHHHHCCCCCC
Q ss_conf 9999977992899981638987762001366777677-75202--466--50468752257777
Q gi|254780810|r 253 AKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDA--NAL--QRPKRFFGAARNIK 311 (423)
Q Consensus 253 a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~--~~l--~~~~~~~~~ar~~~ 311 (423)
|+.+.+||..|++=.=|..+-.|.++-...+.++ +- =.+.. ..+ .-|+.++..|+..+
T Consensus 67 ak~l~~~g~~VIvs~isp~~~~R~~~r~~~~~~~-y~EIyv~~~le~~~~RD~KglY~ka~~g~ 129 (157)
T pfam01583 67 AKLFADAGLIVITSFISPYRADRDMARELHEDGK-FIEVFVDTPLEVCEQRDPKGLYKKARAGE 129 (157)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHCCCHHHHHHHHCCC
T ss_conf 9998428965887215789999999998647885-79999638678877516210677876387
No 115
>KOG2028 consensus
Probab=96.37 E-value=0.041 Score=33.05 Aligned_cols=203 Identities=16% Similarity=0.200 Sum_probs=99.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 31222048778789999999999861188646999950878789999998403427823667888899999999999999
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAK 254 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~ 254 (423)
--+.+.||||+|||+|+.-|+..... +. +-++- ..+|.......| -+.+.|+
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~-~S--yrfve--------------------lSAt~a~t~dvR-----~ife~aq 214 (554)
T KOG2028 163 PSMILWGPPGTGKTTLARLIASTSKK-HS--YRFVE--------------------LSATNAKTNDVR-----DIFEQAQ 214 (554)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCC-CC--EEEEE--------------------EECCCCCHHHHH-----HHHHHHH
T ss_conf 70588669987658899999860577-74--27999--------------------741456618899-----9999988
Q ss_pred H-HHHCCCCEEEEEECHHHHHHHHHCCCC------------CCCCCCCCCCCHHHHHHCHHH-------------HHCCC
Q ss_conf 9-997799289998163898776200136------------677767775202466504687-------------52257
Q gi|254780810|r 255 C-LVEYGLDVVILLDSITRLCRAYNVLMP------------SSGKILTGGVDANALQRPKRF-------------FGAAR 308 (423)
Q Consensus 255 ~-~~e~G~dVll~~DslTR~ArA~~~~~~------------~~g~~~~gg~~~~~l~~~~~~-------------~~~ar 308 (423)
. .-..++.-+|++|-+-||-+++..+-+ +..|-||=-+-...+.+-+.| ..+|-
T Consensus 215 ~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028 215 NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred HHHHHHCCEEEEEEHHHHHHHHHHHHCCCCEECCCCEEEEECCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 78765244069873776553232110034213067069985366897601127787316066733688899999999998
Q ss_pred ----CCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCE-------EEEEHHHHHCCCCCCCCCCCCCCCCHHHC---
Q ss_conf ----7777785001211201267655413889885226607-------89808788479997405335422101551---
Q gi|254780810|r 309 ----NIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSE-------IVLERKIADKRIFPAMDIIKSGTRKEDLL--- 374 (423)
Q Consensus 309 ----~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~-------i~L~r~la~~~~~PAId~~~S~sR~~~~l--- 374 (423)
.++..++-.---.+. .++-|.|-+-...||. +-++-..+-.|---+-+++.|.--.-+.|
T Consensus 295 a~l~dser~~~~l~n~s~~------ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028 295 ASLGDSERPTDPLPNSSMF------VEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHCCCCCCCCCCCCCCHH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHC
T ss_conf 7632102568899983124------5688999998704731888877899999988752477656400288899998531
Q ss_pred ------CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf ------9999999999999996126937899999998402899
Q gi|254780810|r 375 ------VERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKD 411 (423)
Q Consensus 375 ------~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~~ 411 (423)
.+++|+..+..+.+-+-.-++..++-+|...|+...+
T Consensus 369 ~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEd 411 (554)
T KOG2028 369 HILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGED 411 (554)
T ss_pred CCEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
T ss_conf 2000455305778999998760177655279999999716887
No 116
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=96.33 E-value=0.0025 Score=41.02 Aligned_cols=267 Identities=22% Similarity=0.241 Sum_probs=150.4
Q ss_pred CHHHHHHHHH--HCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE------------EEEEEECCCCEEEEECCCCCCCC
Q ss_conf 9899999999--838988576667899999998752058748999------------99854047702675045486666
Q gi|254780810|r 13 SPTKLLAFAE--SLEIENANVMRKQELMFSILKVLSGRDVEIIGE------------GVIEVLQDGFGFLRSPDANYLAG 78 (423)
Q Consensus 13 ~l~EL~eiAk--elgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~e------------GvLEIl~dGyGFLR~~~~~yl~~ 78 (423)
.-++|+.|=+ |||++. =.|.+++.++-+.+-........+ ..|+-..-+|+..| ||+
T Consensus 312 L~EQLKaIkkyhELG~~~---d~~~~~~~~~~~kle~~~e~~P~~~~k~~~~El~kL~~l~~~SsE~~v~R----nYL-- 382 (941)
T TIGR00763 312 LREQLKAIKKYHELGIEK---DDKDELIEKLKEKLEELKEFLPEEVKKVIEKELTKLELLEPSSSEFTVTR----NYL-- 382 (941)
T ss_pred HHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH----HHH--
T ss_conf 888999988875258999---86478999999998740574774689999999987505883353046799----999--
Q ss_pred CCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCC--CCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 556046010000122125987999886246888763000222255--688788512443000200011223432477865
Q gi|254780810|r 79 PDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAIN--FDVPERVRNKIHFDNLTPLYPDKRFNMELNNPE 156 (423)
Q Consensus 79 ~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vn--G~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~ 156 (423)
|+-.. .| |. . .+.. -.++..++++-+.|++-...+-+||..--.+.+
T Consensus 383 --Dwl~~-----------------------lP---W~--~-~S~~f~n~Dl~~A~~~LD~DHYGL~~VK~RIlEYlAV~q 431 (941)
T TIGR00763 383 --DWLTD-----------------------LP---WG--K-YSKEFDNLDLKRAKEILDEDHYGLKKVKERILEYLAVQQ 431 (941)
T ss_pred --HHHHH-----------------------CC---CC--C-CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf --99983-----------------------77---22--1-470266521899999831678888773034135888989
Q ss_pred CCCHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCC
Q ss_conf 3213688899886551023-122204877878999999999986118864699995087878999999840342782366
Q gi|254780810|r 157 NKDISSRVIDLIAPIGKGQ-RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTF 235 (423)
Q Consensus 157 p~~~~~~~id~~~pig~gq-r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~ 235 (423)
-+++--+----+..=-+|- =.+++||||||||.|.+.||++++..+ +-| .+|== +-|+|.+-+=|+=|-|
T Consensus 432 llemrrkkkPkL~~~~~GpqIlClvGPPGVGKTSlg~SIA~ALnRkF---vR~--SlGG~-~DeAEIrGHRRTYvGA--- 502 (941)
T TIGR00763 432 LLEMRRKKKPKLRGKMKGPQILCLVGPPGVGKTSLGKSIAKALNRKF---VRF--SLGGV-RDEAEIRGHRRTYVGA--- 502 (941)
T ss_pred HHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEE---EEE--EECCC-EEHHHCCCCCCCCCCC---
T ss_conf 99876403644477888876787207269542227899999968804---999--52672-2031127864320346---
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH--HHHHCCCCCCCCCCCCCCCHHHH-H--------------
Q ss_conf 788889999999999999999977992899981638987--76200136677767775202466-5--------------
Q gi|254780810|r 236 DESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC--RAYNVLMPSSGKILTGGVDANAL-Q-------------- 298 (423)
Q Consensus 236 d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~A--rA~~~~~~~~g~~~~gg~~~~~l-~-------------- 298 (423)
-|+.=+++ +-.| +=+|=|+|+|=|-+++ +-+ .|-|++|| +
T Consensus 503 --MPGriiQ~----lk~~-----~t~NPl~LlDEIDK~~~~~~~------------~GDPaSALLEvLDPEQN~~F~DHY 559 (941)
T TIGR00763 503 --MPGRIIQG----LKKA-----KTKNPLILLDEIDKIGLKSSF------------RGDPASALLEVLDPEQNNAFSDHY 559 (941)
T ss_pred --CHHHHHHH----HHHC-----CCCCCEEEEEEEEEECCCCCC------------CCCHHHHHHHHCCHHHCCCCCCCC
T ss_conf --72578999----8760-----415880686202200167886------------556378886412864360425530
Q ss_pred ------HCHHH--HHCCCCCCCCCCCEEEEEEEECCCCCC-----CCHHHHHHHHCCCCEEEEEHHHHHCCCCCC
Q ss_conf ------04687--522577777785001211201267655-----413889885226607898087884799974
Q gi|254780810|r 299 ------RPKRF--FGAARNIKEGGSLTIIGTALVDTGSRM-----DEVIFEEFKGTGNSEIVLERKIADKRIFPA 360 (423)
Q Consensus 299 ------~~~~~--~~~ar~~~~~Gs~T~~~t~lvetg~~~-----d~~i~~~~~~~~d~~i~L~r~la~~~~~PA 360 (423)
..+.+ |=+.- =++-.|-.+|.| || +-|+++|=..|.-.||+ =+.+.+.|+=|.
T Consensus 560 ldvp~DLS~V~CyFi~TA-----N~~d~IP~PLLD---RMEvI~lsGY~~~EK~~IA~~yLi-P~~~~~~GL~~~ 625 (941)
T TIGR00763 560 LDVPFDLSKVLCYFIATA-----NSIDTIPRPLLD---RMEVIELSGYTEEEKLEIAKKYLI-PKALEDHGLKPD 625 (941)
T ss_pred CCCCCCHHHHHHHEEECC-----CCCCCCCCCCCC---CEEEEECCCCCHHHHHHHHHHCCH-HHHHHHHCCCCC
T ss_conf 023400420021000244-----757677722137---402452388876789999985471-367987088813
No 117
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.32 E-value=0.0076 Score=37.84 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=26.6
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 5510231222048778789999999999861
Q gi|254780810|r 170 PIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 170 pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
-+-+|+..+|+||.|+||||++++|+--...
T Consensus 21 ~v~~GEiv~ilGpNGaGKSTllk~i~G~l~p 51 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 5589989999899999999999999688678
No 118
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.30 E-value=0.031 Score=33.85 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=26.4
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
..|-+|...+|+|+.|+|||||++.|+.-+
T Consensus 23 l~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll 52 (275)
T PRK13639 23 FKAEEGEMIAILGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899899999999964999999997398
No 119
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.27 E-value=0.079 Score=31.15 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=62.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 22048778789999999999861188646999950878789999998403427823667888899999999999999999
Q gi|254780810|r 178 LIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCLV 257 (423)
Q Consensus 178 ~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~ 257 (423)
-|.|-||+|||||...+...+.+....+ ++|=|. ++++. +....+-+...|...+......|+.+.
T Consensus 3 W~tGLsgsGKTTlA~~l~~~L~~~~~~~---~~lDGD---~iR~~--------l~~~lgys~~~R~~n~~r~~~lak~l~ 68 (149)
T cd02027 3 WLTGLSGSGKSTIARALEEKLFQRGRPV---YVLDGD---NVRHG--------LNKDLGFSREDREENIRRIAEVAKLLA 68 (149)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCE---EEECCH---HHHHH--------HCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9879999999999999999999869975---997748---89977--------365559887889999999999999998
Q ss_pred HCCCCEEEEEECHHHHHHHHHC
Q ss_conf 7799289998163898776200
Q gi|254780810|r 258 EYGLDVVILLDSITRLCRAYNV 279 (423)
Q Consensus 258 e~G~dVll~~DslTR~ArA~~~ 279 (423)
+||-.|++=.=|..+-.|.++-
T Consensus 69 ~qg~~VIvs~isp~~~~R~~~r 90 (149)
T cd02027 69 DAGLIVIAAFISPYREDREAAR 90 (149)
T ss_pred HCCCEEEEECCCCCHHHHHHHH
T ss_conf 3798278841678899999999
No 120
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=96.24 E-value=0.098 Score=30.54 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHCCCC---EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 36888998865510231---22204877878999999999986118864699995
Q gi|254780810|r 160 ISSRVIDLIAPIGKGQR---SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLL 211 (423)
Q Consensus 160 ~~~~~id~~~pig~gqr---~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~l 211 (423)
....+.+.++. +.|.. ..|.|++|+|||.|++-+++...+++++..++|+-
T Consensus 18 ~a~~~~~~i~~-~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~ 71 (219)
T pfam00308 18 FAHAAALAVAE-APGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLT 71 (219)
T ss_pred HHHHHHHHHHH-CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99999999996-7587678269988999988899999999999849998288843
No 121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.23 E-value=0.074 Score=31.33 Aligned_cols=60 Identities=23% Similarity=0.278 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf 532136888998865--510231222048778789999999999861188646999950878789
Q gi|254780810|r 156 ENKDISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEE 218 (423)
Q Consensus 156 ~p~~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~e 218 (423)
....+++.-+|-+.- |..|+=.||=|.||.||||||.++|..+.+++. .+.|+ -||..-+
T Consensus 62 ~R~~Tgi~ElDRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~--~vLYv-SGEES~~ 123 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGG--KVLYV-SGEESPE 123 (372)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC--CEEEE-ECHHHHH
T ss_conf 54447836665400577306717998259988688999999999986399--38998-2456789
No 122
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=96.22 E-value=0.015 Score=35.96 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 222048778789999999999861
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
.++.||||+|||+++..+|+....
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~ 24 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGA 24 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 987899999999999999999789
No 123
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.20 E-value=0.041 Score=33.03 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=26.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
+.|-+|+..+|+|+.|+|||||++.++.-+
T Consensus 28 l~I~~Ge~~aiiG~nGsGKSTLl~~l~GLl 57 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 798699899999999981999999997078
No 124
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.16 E-value=0.098 Score=30.54 Aligned_cols=173 Identities=20% Similarity=0.274 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHH--HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-----------
Q ss_conf 53213688899886--55102312220487787899999999998611886469999508787899999-----------
Q gi|254780810|r 156 ENKDISSRVIDLIA--PIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDM----------- 222 (423)
Q Consensus 156 ~p~~~~~~~id~~~--pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~----------- 222 (423)
+...||+.-+|-+. -+..|+=.+|=|.||.||||||.++|..+.++. .+.|+ -||..-+=--+
T Consensus 70 ~R~~Tgi~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la~~~---~vLYv-SGEES~~Qik~RA~RLg~~~~~ 145 (454)
T PRK11823 70 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALAAGG---KVLYV-SGEESLQQIKLRAERLGLPSDN 145 (454)
T ss_pred CCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC---CEEEE-CCCHHHHHHHHHHHHHCCCCCC
T ss_conf 5323785566522158720664899507998889999999999985599---57998-1501578999999975888887
Q ss_pred ---------------HHHHCCE---------EEECCCCCCHHHHHHHHHHHH---HHHH---------------------
Q ss_conf ---------------9840342---------782366788889999999999---9999---------------------
Q gi|254780810|r 223 ---------------QRSVQGE---------VISSTFDESAARHVQVAEMVI---AKAK--------------------- 254 (423)
Q Consensus 223 ---------------~~~~~~~---------vv~st~d~~~~~~~~~a~~a~---~~a~--------------------- 254 (423)
.+..+.. +.....|-+|..-.++-+.+. ..||
T Consensus 146 l~l~~et~l~~Il~~i~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG~iAGP 225 (454)
T PRK11823 146 LYLLAETNLEDILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEGAIAGP 225 (454)
T ss_pred CEEEECCCHHHHHHHHHHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf 37885368999999998609988999431115415667789978999999999999997449828999977267764661
Q ss_pred HHHHCCCCEEEEEEC----HHHHHHHHHCCCCCCCCC----C-CCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEEC
Q ss_conf 999779928999816----389877620013667776----7-7752024665046875225777777850012112012
Q gi|254780810|r 255 CLVEYGLDVVILLDS----ITRLCRAYNVLMPSSGKI----L-TGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVD 325 (423)
Q Consensus 255 ~~~e~G~dVll~~Ds----lTR~ArA~~~~~~~~g~~----~-~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lve 325 (423)
+..|+==|++|.++. -.|+-||.-..=.+..|. + ..|+.+. .-|+.+|-+.|...-.|| ..|+..|
T Consensus 226 kvLEHmVDtVl~fEGd~~~~~RiLR~~KNRFG~t~EiGvFeM~~~GL~~v--~nPS~~Fls~~~~~~~Gs---~i~~~~E 300 (454)
T PRK11823 226 RVLEHMVDTVLYFEGDRHSRFRILRAVKNRFGATNEIGVFEMTEKGLREV--SNPSELFLSERDENVPGS---AVTVTME 300 (454)
T ss_pred HHHHHHHCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEC--CCHHHHHHHCCCCCCCCE---EEEEEEE
T ss_conf 45222010468751576655024563124677666058998616884566--887799862688787750---7998885
Q ss_pred CCCCCCCHHHHHHHHC
Q ss_conf 6765541388988522
Q gi|254780810|r 326 TGSRMDEVIFEEFKGT 341 (423)
Q Consensus 326 tg~~~d~~i~~~~~~~ 341 (423)
|++ |+.-|+.+.
T Consensus 301 -GsR---pllvEvQAL 312 (454)
T PRK11823 301 -GTR---PLLVEIQAL 312 (454)
T ss_pred -ECC---CHHHHHHHH
T ss_conf -064---240103446
No 125
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.14 E-value=0.0082 Score=37.63 Aligned_cols=54 Identities=28% Similarity=0.397 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC--CCCEEEEEECC
Q ss_conf 3688899886551023122204877878999999999986118--86469999508
Q gi|254780810|r 160 ISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNH--PECYLIVLLID 213 (423)
Q Consensus 160 ~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~--~~v~~i~~lig 213 (423)
...+.++.+.+..+..+..|+|.||+||||.++.+|..+..++ +.-+.+.++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~ 263 (824)
T COG5635 208 DDQDALPGLEALEKYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLN 263 (824)
T ss_pred CHHHHHHHCCHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 11234610035866523334468887626799999999741525665677344423
No 126
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.12 E-value=0.063 Score=31.79 Aligned_cols=92 Identities=21% Similarity=0.184 Sum_probs=62.4
Q ss_pred CCCCE---EEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 02312---220487787899999999998611886469999508787899999984034278236678888999999999
Q gi|254780810|r 173 KGQRS---LIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMV 249 (423)
Q Consensus 173 ~gqr~---~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a 249 (423)
.||++ -|.|-||+|||||...+.+.+..... .++ +|=| -++++. +...-+-+...|...+...
T Consensus 20 ~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~~~~--~~~-~LDG---D~lR~~--------l~~dlgfs~~dR~~n~~r~ 85 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGV--HTY-LLDG---DNVRHG--------LCSDLGFSDADRKENIRRV 85 (198)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC--CEE-EECH---HHHHHH--------HCCCCCCCHHHHHHHHHHH
T ss_conf 6899869998799999889999999999997599--759-9777---999874--------3667898999999999999
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHH
Q ss_conf 99999999779928999816389877620
Q gi|254780810|r 250 IAKAKCLVEYGLDVVILLDSITRLCRAYN 278 (423)
Q Consensus 250 ~~~a~~~~e~G~dVll~~DslTR~ArA~~ 278 (423)
...|+.+.++|..|++=.=|..+-.|.+.
T Consensus 86 ~~lak~l~~~G~iVIvs~Isp~~~~R~~~ 114 (198)
T PRK03846 86 GEVAKLMVDAGLVVLTAFISPHRAERQMV 114 (198)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHH
T ss_conf 99999998589836641478879999999
No 127
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.10 E-value=0.093 Score=30.69 Aligned_cols=114 Identities=18% Similarity=0.275 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHHHHHC----CCCCEEEEE-ECC-CCHHHHHHHHHHH--
Q ss_conf 3213688899886551--02312220487787899999999998611----886469999-508-7878999999840--
Q gi|254780810|r 157 NKDISSRVIDLIAPIG--KGQRSLIVAPPRTGKTILLQNIAHSIKKN----HPECYLIVL-LID-ERPEEVTDMQRSV-- 226 (423)
Q Consensus 157 p~~~~~~~id~~~pig--~gqr~~i~~~~~~gkt~ll~~ia~~~~~~----~~~v~~i~~-lig-Er~~ev~e~~~~~-- 226 (423)
...||.+.+|.+.-=| .|.=--|+|++|+|||-+..++|-++... .-+-.++|. -=| =||+-+.++.+..
T Consensus 84 ~isTg~~~lD~lLgGGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgtF~peRi~qia~~~g~ 163 (318)
T PRK04301 84 KITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENTFRPERIEQMAEGLGL 163 (318)
T ss_pred CCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 24788878880547983367078886688787035667767653376777898863799956898697999999998499
Q ss_pred -----C-CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECHHHHHHH
Q ss_conf -----3-42782366788889999999999999999977992-89998163898776
Q gi|254780810|r 227 -----Q-GEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLD-VVILLDSITRLCRA 276 (423)
Q Consensus 227 -----~-~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~d-Vll~~DslTR~ArA 276 (423)
. ...++-.++ ...+. ..++.+..+..++++ -|+++||+|-+-|+
T Consensus 164 d~~~~L~nI~v~r~~~--~~~q~----~~~~~~~~~~~~~~~v~LvVvDSi~alfR~ 214 (318)
T PRK04301 164 DPDEVLDNIHVARAYN--SDHQM----LLAEKAEELIKEGNNIKLVIVDSLTAHFRA 214 (318)
T ss_pred CHHHHHHCEEEEECCC--HHHHH----HHHHHHHHHHHHCCCCEEEEEECCHHHEEE
T ss_conf 9789864026861399--89999----999999999962788049999434232121
No 128
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=96.10 E-value=0.018 Score=35.39 Aligned_cols=44 Identities=18% Similarity=0.460 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 136888998865-51023122204877878999999999986118
Q gi|254780810|r 159 DISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNH 202 (423)
Q Consensus 159 ~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~ 202 (423)
..+.-.++-+.| .|+-|+.||-|.||+||||++..+........
T Consensus 22 ~~a~~ll~~i~p~~GnA~~vG~TG~PGaGKSTl~~~l~~~lrRrG 66 (333)
T TIGR00750 22 ELAKELLERILPKTGNAHVVGITGVPGAGKSTLVEKLIMELRRRG 66 (333)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999999998624327907876646888857779999989997659
No 129
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=96.07 E-value=0.055 Score=32.19 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=61.7
Q ss_pred HHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHHHC----------
Q ss_conf 889988655--102312220487787899999999998611886469999---50878789999998403----------
Q gi|254780810|r 163 RVIDLIAPI--GKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL---LIDERPEEVTDMQRSVQ---------- 227 (423)
Q Consensus 163 ~~id~~~pi--g~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~---ligEr~~ev~e~~~~~~---------- 227 (423)
...|.+.-. ..+=-.+|.|+=|+|||+++.++......++.+.+++.. .-+....-+..|...+.
T Consensus 7 ~la~~i~~~~~~~~~vIgl~G~WGsGKTs~l~~~~~~L~~~~~~~~~v~fn~W~~~~~d~~~~~l~~~l~~~l~~~~~~~ 86 (301)
T pfam07693 7 NLAKLLVEPSLAPGFVIGLYGAWGSGKTSFLNLLEDELKEFPEEFHIVYFDPWLFSGQDDAVASLLAALADALEEEYSAL 86 (301)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999957778999799998989999999999999998613688269998123047967899999999999998750621
Q ss_pred -------------------------C-------EEEE----CCCCCC----HHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf -------------------------4-------2782----366788----88999999999999999997799289998
Q gi|254780810|r 228 -------------------------G-------EVIS----STFDES----AARHVQVAEMVIAKAKCLVEYGLDVVILL 267 (423)
Q Consensus 228 -------------------------~-------~vv~----st~d~~----~~~~~~~a~~a~~~a~~~~e~G~dVll~~ 267 (423)
+ ..+. .+.+.. -..+....+.--+..+.+.+.++.+++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~iVviI 166 (301)
T pfam07693 87 ATKLLIGKKLLALVIGAKIGGNFGVGTALALTGLVASVEGKSLKLLSIEPLKKLQTEIEELRTDIASTLDDLQKRIVVII 166 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 35678766567777667777664455677774100345655410022354420378999999999999973599789997
Q ss_pred ECHHHHH
Q ss_conf 1638987
Q gi|254780810|r 268 DSITRLC 274 (423)
Q Consensus 268 DslTR~A 274 (423)
|+|-|+-
T Consensus 167 DDLDRc~ 173 (301)
T pfam07693 167 DDLDRCE 173 (301)
T ss_pred CCCCCCC
T ss_conf 3655488
No 130
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=96.06 E-value=0.0058 Score=38.62 Aligned_cols=67 Identities=21% Similarity=0.326 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH--HHHHHHH-----CCEEEECC
Q ss_conf 8889988655102312220487787899999999998611886469999508787899--9999840-----34278236
Q gi|254780810|r 162 SRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEV--TDMQRSV-----QGEVISST 234 (423)
Q Consensus 162 ~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev--~e~~~~~-----~~~vv~st 234 (423)
..-|| ..+-.|.|.-|+|++|+|||||++-++.-+.-.+.++ .|=|.-+.++ .|..+.+ +.|+|.+|
T Consensus 377 l~~V~--L~l~~G~r~Ai~G~SG~GKsTLL~~L~G~l~P~~G~v----tl~G~~~~~~~~~evrr~v~~~aQ~aHlF~tt 450 (566)
T TIGR02868 377 LDGVS--LDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEV----TLDGVPVSSLSEDEVRRRVSVFAQDAHLFDTT 450 (566)
T ss_pred HCCCC--CCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCE----EECCCCHHHCCCCHHEHHEEECCCCCCCCCCC
T ss_conf 42786--4113886089866887657899999984028999917----87773243257311000003127886211054
No 131
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.04 E-value=0.036 Score=33.37 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=24.8
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
+.|-+|+..+|+|+.|+|||||+..+..
T Consensus 16 l~i~~Ge~~~iiG~nGsGKSTLl~~~~~ 43 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 7888998999999999989999998887
No 132
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.04 E-value=0.0098 Score=37.11 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=32.0
Q ss_pred HHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
Q ss_conf 88998865510-23122204877878999999999986118864699995087878999
Q gi|254780810|r 163 RVIDLIAPIGK-GQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVT 220 (423)
Q Consensus 163 ~~id~~~pig~-gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~ 220 (423)
..-+++.-+-+ +.-.+|.||.|+||||++..+...+... + ..++ .| |-+.|..
T Consensus 127 ~~~~~L~~~v~~~~~ilIsG~TGSGKTT~l~all~~i~~~--~-~rii-ti-ED~~El~ 180 (283)
T pfam00437 127 DIAEFLRQAVQARGNILVSGGTGSGKTTLLYALLNEINTD--D-ERIV-TI-EDPVEIQ 180 (283)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCC--C-CCEE-EE-CCCCEEC
T ss_conf 9999999999819759998899998899999999840877--7-6278-73-3785231
No 133
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.03 E-value=0.0047 Score=39.19 Aligned_cols=70 Identities=29% Similarity=0.387 Sum_probs=46.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 12220487787899999999998611886469999508787899999984034278236678888999999999999999
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKC 255 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~ 255 (423)
-.+++||||.|||||++=||+=+..+ +++.-.=.=|||.-..-+.-.+
T Consensus 32 H~LL~GPPGLGKTTLA~IiA~Emg~~---l~iTsGP~L~kPgDlaaiLt~L----------------------------- 79 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVN---LKITSGPALEKPGDLAAILTNL----------------------------- 79 (305)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHC-----------------------------
T ss_conf 16631756874678999999983893---2674067554757899999705-----------------------------
Q ss_pred HHHCCCCEEEEEECHHHHHHHHHCCC
Q ss_conf 99779928999816389877620013
Q gi|254780810|r 256 LVEYGLDVVILLDSITRLCRAYNVLM 281 (423)
Q Consensus 256 ~~e~G~dVll~~DslTR~ArA~~~~~ 281 (423)
+-+| +|++|=|-|++++-=|.-
T Consensus 80 ---~~gD-VLFIDEIHRL~p~~EE~L 101 (305)
T TIGR00635 80 ---EEGD-VLFIDEIHRLSPAIEELL 101 (305)
T ss_pred ---CCCC-EEECCHHHHCCHHHHHHC
T ss_conf ---6896-310125650483345310
No 134
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.01 E-value=0.058 Score=32.06 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=28.0
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 886551023122204877878999999999986
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
.-+.|-+|+..+|+|++|+|||||++.++--+.
T Consensus 45 Is~~i~~Ge~vaIIG~nGsGKSTL~~~l~Gll~ 77 (320)
T PRK13631 45 ISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 455885998999994999849999999975888
No 135
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.98 E-value=0.01 Score=37.02 Aligned_cols=58 Identities=19% Similarity=0.382 Sum_probs=40.4
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998611886469999-5087878999999840
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSV 226 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~ 226 (423)
+-|-.|+.+.|+|++|+||||||..|..-+....-+++.--. ..+-++.|.+.+.+.+
T Consensus 25 l~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~i 83 (258)
T COG3638 25 LEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDI 83 (258)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHCCCHHHHHHHHHHC
T ss_conf 77579868999878888689999998666588861599656221025457899999741
No 136
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.98 E-value=0.0057 Score=38.68 Aligned_cols=59 Identities=25% Similarity=0.555 Sum_probs=39.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE---EECCCCHHHHHHHHHHHCCEEE
Q ss_conf 65510231222048778789999999999861188646999---9508787899999984034278
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIV---LLIDERPEEVTDMQRSVQGEVI 231 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~---~ligEr~~ev~e~~~~~~~~vv 231 (423)
..|.+|....|+||+|+||||||..|+- +.. |+.=-|. --|.....+...+.+.+ +.|+
T Consensus 21 l~i~~Ge~~~ivGpSGsGKSTLL~~i~g-L~~--p~~G~i~i~g~~i~~~~~~~~~~rr~i-G~VF 82 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINL-LEE--PDSGTIIIDGLKLTDDKKNINELRQKV-GMVF 82 (213)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC-CCC--CCCEEEEECCEECCCCHHHHHHHHCCC-EEEE
T ss_conf 5988998999999998449999999981-999--986499999999999815699986782-7996
No 137
>KOG4658 consensus
Probab=95.97 E-value=0.1 Score=30.46 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH--HHCCCCCEEEEEECCC--CHHHHHHHHHHHCCEEEECCCCC
Q ss_conf 8889988655102312220487787899999999998--6118864699995087--87899999984034278236678
Q gi|254780810|r 162 SRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI--KKNHPECYLIVLLIDE--RPEEVTDMQRSVQGEVISSTFDE 237 (423)
Q Consensus 162 ~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~--~~~~~~v~~i~~ligE--r~~ev~e~~~~~~~~vv~st~d~ 237 (423)
-++.+.+...+- |-++|+|-.|+|||||+.++-+.- ..++.|++.+++ +.+ ..+.|.+-+-.-.+ ......++
T Consensus 168 ekl~~~L~~d~~-~ivgi~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~-VSk~f~~~~iq~~Il~~l~-~~~~~~~~ 244 (889)
T KOG4658 168 EKLWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV-VSKEFTTRKIQQTILERLG-LLDEEWED 244 (889)
T ss_pred HHHHHHHCCCCC-CEEEEECCCCCCHHHHHHHHHHCCHHHCCCCCEEEEEE-ECCCCCHHHHHHHHHHHHC-CCCCCCCC
T ss_conf 999998404799-68999889703499999998413312235787499999-7763108889999999844-68710001
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf 8889999999999999999977992899981638
Q gi|254780810|r 238 SAARHVQVAEMVIAKAKCLVEYGLDVVILLDSIT 271 (423)
Q Consensus 238 ~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslT 271 (423)
... .+.+..+-+++. ++.-||++|++=
T Consensus 245 ~~~-----~~~~~~i~~~L~--~krfllvLDDIW 271 (889)
T KOG4658 245 KEE-----DELASKLLNLLE--GKRFLLVLDDIW 271 (889)
T ss_pred CCH-----HHHHHHHHHHHC--CCCEEEEEECCC
T ss_conf 028-----899999999855--685599982567
No 138
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.0051 Score=38.98 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=25.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..|.+|+-..|+||||+|||||+..||-
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 5877997999989997889999999968
No 139
>KOG0745 consensus
Probab=95.94 E-value=0.022 Score=34.84 Aligned_cols=112 Identities=23% Similarity=0.381 Sum_probs=59.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 12220487787899999999998611886469999-50878789999998403427823667888899999999999999
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAK 254 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~ 254 (423)
-++.++|.|+|||-|.+.+|+-.+.-+.-+.|--+ --|=-|+.|.-.+.. -+..|+
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~K-----------------------Ll~~A~ 284 (564)
T KOG0745 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQK-----------------------LLQEAE 284 (564)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCCCHHHHHHH-----------------------HHHHCC
T ss_conf 479977888764389999999708876873255220055345429999999-----------------------999725
Q ss_pred HHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHCHHHHHCCCCCCCCCC
Q ss_conf 999779928999816389877620013667776777-5202466504687522577777785
Q gi|254780810|r 255 CLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTG-GVDANALQRPKRFFGAARNIKEGGS 315 (423)
Q Consensus 255 ~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~g-g~~~~~l~~~~~~~~~ar~~~~~Gs 315 (423)
|-+|.-+.=.+++|-+-+.+.+.--+. ..|-.|| |+..+. .|.+.|.--|+.+.|+
T Consensus 285 ~nVekAQqGIVflDEvDKi~~~~~~i~--~~RDVsGEGVQQaL---LKllEGtvVnVpeK~~ 341 (564)
T KOG0745 285 YNVEKAQQGIVFLDEVDKITKKAESIH--TSRDVSGEGVQQAL---LKLLEGTVVNVPEKGS 341 (564)
T ss_pred CCHHHHHCCEEEEEHHHHHCCCCCCCC--CCCCCCCHHHHHHH---HHHHCCCEECCCCCCC
T ss_conf 789988267388760124413676545--44456626699999---9985262770267787
No 140
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=95.89 E-value=0.0054 Score=38.83 Aligned_cols=30 Identities=33% Similarity=0.535 Sum_probs=26.3
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
..+-+|.++-|+||+|+||||||.-||=.+
T Consensus 19 L~V~~Ge~VAi~GpSGAGKSTLLnLiAGF~ 48 (213)
T TIGR01277 19 LSVEDGERVAILGPSGAGKSTLLNLIAGFL 48 (213)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 413017768887589862788987786404
No 141
>PRK09519 recA recombinase A; Reviewed
Probab=95.87 E-value=0.085 Score=30.95 Aligned_cols=10 Identities=40% Similarity=0.687 Sum_probs=5.3
Q ss_pred CCCCCCEEEE
Q ss_conf 2125987999
Q gi|254780810|r 93 SLKTGDTVEG 102 (423)
Q Consensus 93 ~Lr~GD~V~g 102 (423)
.||.|+.+.|
T Consensus 231 ~IK~G~~~iG 240 (790)
T PRK09519 231 TLKDGTNAVG 240 (790)
T ss_pred CCCCCCCCCC
T ss_conf 0026772204
No 142
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=95.87 E-value=0.15 Score=29.40 Aligned_cols=85 Identities=28% Similarity=0.323 Sum_probs=49.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH---HHHHHHCCEEEE-CCCCCCHHHHHHHHHHHHHH
Q ss_conf 22204877878999999999986118864699995087878999---999840342782-36678888999999999999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVT---DMQRSVQGEVIS-STFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~---e~~~~~~~~vv~-st~d~~~~~~~~~a~~a~~~ 252 (423)
..++||.|+||||.+..+|......+.. +.++..=-.|.--+- .|.+...-.++. .+.++|+. +..-+++.
T Consensus 4 i~lvGptGvGKTTTiaKLAa~~~~~~~~-V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~----~~~~~l~~ 78 (196)
T pfam00448 4 ILLVGLQGSGKTTTIAKLAAYLKKQGKK-VLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAA----VAFDAVEK 78 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHH----HHHHHHHH
T ss_conf 9998999998899999999999977992-899975877688999999999863981781487778789----99999999
Q ss_pred HHHHHHCCCCEEEEEECH
Q ss_conf 999997799289998163
Q gi|254780810|r 253 AKCLVEYGLDVVILLDSI 270 (423)
Q Consensus 253 a~~~~e~G~dVll~~Dsl 270 (423)
++ .++.| ++++|.-
T Consensus 79 ~~---~~~~D-~IlIDTa 92 (196)
T pfam00448 79 AK---AENYD-VVLVDTA 92 (196)
T ss_pred HH---HCCCC-EEEEECC
T ss_conf 88---46899-9999899
No 143
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.87 E-value=0.038 Score=33.28 Aligned_cols=118 Identities=20% Similarity=0.250 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCCC-------------CEE-EEEECCC----C
Q ss_conf 532136888998865510231--2220487787899999999998611886-------------469-9995087----8
Q gi|254780810|r 156 ENKDISSRVIDLIAPIGKGQR--SLIVAPPRTGKTILLQNIAHSIKKNHPE-------------CYL-IVLLIDE----R 215 (423)
Q Consensus 156 ~p~~~~~~~id~~~pig~gqr--~~i~~~~~~gkt~ll~~ia~~~~~~~~~-------------v~~-i~~ligE----r 215 (423)
..+.||++.+|-+.==|-=.+ -=+||-.|+|||=|.+++|-+++ .|+ ..- -++-||- |
T Consensus 76 ~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQ--lP~flfydeeave~GGL~gp~av~IDTEnTFR 153 (333)
T TIGR02236 76 GKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQ--LPEFLFYDEEAVEKGGLEGPKAVYIDTENTFR 153 (333)
T ss_pred CEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHC--CCCHHHCCCHHHCCCCCCCCEEEEEECCCCCC
T ss_conf 5044486367656079600005888771007865787667655322--87112101100014776787689985597986
Q ss_pred HHHHHHHHH--HHC--------------CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE-EEEEECHHHHHHH
Q ss_conf 789999998--403--------------427823667888899999999999999999779928-9998163898776
Q gi|254780810|r 216 PEEVTDMQR--SVQ--------------GEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDV-VILLDSITRLCRA 276 (423)
Q Consensus 216 ~~ev~e~~~--~~~--------------~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dV-ll~~DslTR~ArA 276 (423)
||=+.+|.+ ... ..+.++-+ =.+.+|+..++-+-+.++-.-+.|+.| ||++||||-+=||
T Consensus 154 PERI~qmA~GL~~g~l~~~melD~~evL~nI~vARA-yNS~HQmllve~~~~li~e~~~~~~pv~L~~VDSLtsHFRa 230 (333)
T TIGR02236 154 PERIEQMAKGLARGTLQAAMELDPDEVLKNIYVARA-YNSNHQMLLVEKAKELIKELKNEDKPVRLLIVDSLTSHFRA 230 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEE-ECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
T ss_conf 257999998631113666532787777203047785-26314799999999999730157994689998121002236
No 144
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=95.84 E-value=0.021 Score=34.93 Aligned_cols=43 Identities=26% Similarity=0.402 Sum_probs=31.7
Q ss_pred HHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 510231--2220487787899999999998611886469999508
Q gi|254780810|r 171 IGKGQR--SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLID 213 (423)
Q Consensus 171 ig~gqr--~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~lig 213 (423)
...+|| .+|-|+||+||||+...++..++...+...++++-.|
T Consensus 29 ~~~~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmD 73 (230)
T PRK09270 29 AEPQRRTVVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMD 73 (230)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 599971899998999889999999999998623799857997365
No 145
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.81 E-value=0.15 Score=29.24 Aligned_cols=85 Identities=21% Similarity=0.311 Sum_probs=48.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC-CCHHHHHH---HHHHHCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 2220487787899999999998611886469999508-78789999---9984034278236678888999999999999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLID-ERPEEVTD---MQRSVQGEVISSTFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~lig-Er~~ev~e---~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~ 252 (423)
.+++||+|+||||.+..+|.....++.. +.++-.| .|.--+-. |.+...-.+......+.+. .+.+.+
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~~~~k--V~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~---~~~~~~--- 74 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKK--VLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPV---SIAKRA--- 74 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCE--EEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHH---HHHHHH---
T ss_conf 9998999998899999999999976992--89997488757799999999997498599227755879---999999---
Q ss_pred HHHHHHCCCCEEEEEECH
Q ss_conf 999997799289998163
Q gi|254780810|r 253 AKCLVEYGLDVVILLDSI 270 (423)
Q Consensus 253 a~~~~e~G~dVll~~Dsl 270 (423)
-++++.++.|+ +++|.-
T Consensus 75 ~~~~~~~~~D~-IlIDTa 91 (173)
T cd03115 75 IEHAREENFDV-VIVDTA 91 (173)
T ss_pred HHHHHHCCCCE-EEEECC
T ss_conf 99987568998-999788
No 146
>PRK11642 exoribonuclease R; Provisional
Probab=95.81 E-value=0.15 Score=29.24 Aligned_cols=77 Identities=29% Similarity=0.436 Sum_probs=49.5
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEE--------------EEEEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf 999999838988576667899999998752058748--------------999998540477026750454866665560
Q gi|254780810|r 17 LLAFAESLEIENANVMRKQELMFSILKVLSGRDVEI--------------IGEGVIEVLQDGFGFLRSPDANYLAGPDDI 82 (423)
Q Consensus 17 L~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~--------------~~eGvLEIl~dGyGFLR~~~~~yl~~~~Di 82 (423)
..+||+.++|.+.. +.+.....++.+...+.++ .+.|.+...++||||++.. ...+|+
T Consensus 37 ~~el~~~~~l~~~~---~~~~L~~~L~~l~~~g~l~~~r~~~y~~~~~~~lv~G~v~~~~~GfgFv~~e-----~~~eDi 108 (813)
T PRK11642 37 REELAVELNIEGEE---QLEALRRRLRAMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVE-----GRKDDL 108 (813)
T ss_pred HHHHHHHCCCCCHH---HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECC-----CCCCCE
T ss_conf 99999981999889---9999999999999689778748972367776785689999888877788707-----987770
Q ss_pred EEECCCCCCCCCCCCCEEEEE
Q ss_conf 460100001221259879998
Q gi|254780810|r 83 YVSPSQIKSFSLKTGDTVEGS 103 (423)
Q Consensus 83 yVs~slir~f~Lr~GD~V~g~ 103 (423)
|+++.+.+. .-.||.|...
T Consensus 109 fI~~~~l~~--a~~GDrVlvr 127 (813)
T PRK11642 109 YLSSEQMKT--CIHGDQVLAQ 127 (813)
T ss_pred EECHHHHCC--CCCCCEEEEE
T ss_conf 008467432--6799999999
No 147
>PRK06526 transposase; Provisional
Probab=95.79 E-value=0.06 Score=31.96 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 36888998865510231222048778789999999999861188
Q gi|254780810|r 160 ISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHP 203 (423)
Q Consensus 160 ~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~ 203 (423)
..++-+-.+-=|-.||-..|+||||+|||.|+.-++.....+.-
T Consensus 84 ~~i~~La~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~ 127 (254)
T PRK06526 84 DTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGH 127 (254)
T ss_pred HHHHHHHCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999863717765887899899998689999999999998699
No 148
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.78 E-value=0.11 Score=30.24 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=57.0
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC-------EE-----
Q ss_conf 889988655102312220487787899999999998611886469999508787899999984034-------27-----
Q gi|254780810|r 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQG-------EV----- 230 (423)
Q Consensus 163 ~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~-------~v----- 230 (423)
|.++.+..+..+.=.+|.||+|-||||++.+-++ .. . .+++ +-+++.-.+..-|...+-. ..
T Consensus 21 rL~~~L~~~~~~~l~lv~APaG~GKTtl~a~w~~---~~-~-~~~W-lsld~~d~~~~~f~~~l~~al~~~~~~~~~~~~ 94 (903)
T PRK04841 21 RLLAKLSGANNYRLVLVRSPAGYGKTTLASQWAA---GK-N-NVGW-YSLDESDNQPERFASYLIAALQQATNGHCSKSE 94 (903)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH---CC-C-CEEE-EECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 7999998515899799977999889999999983---49-9-8599-858854489999999999999985654331123
Q ss_pred -EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf -82366788889999999999999999977992899981638987
Q gi|254780810|r 231 -ISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC 274 (423)
Q Consensus 231 -v~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~A 274 (423)
.....+. +......+.+ ..-+.+.+..++|++|+.-+..
T Consensus 95 ~~~~~~~~-~~~~~~~~~l----~~~l~~~~~~~~lvlDD~h~i~ 134 (903)
T PRK04841 95 ALAEKRQY-ASLTSLFAQL----FIELSDWHQPLYLVLDDYHLIT 134 (903)
T ss_pred HCCCCCCC-CCHHHHHHHH----HHHHHCCCCCEEEEEECCCCCC
T ss_conf 11355665-5499999999----9997558998699986836488
No 149
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=95.76 E-value=0.16 Score=29.12 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHHHH----HCCCCCEEEEE-ECC-CCHHHHHHHHHHH-
Q ss_conf 53213688899886551--023122204877878999999999986----11886469999-508-7878999999840-
Q gi|254780810|r 156 ENKDISSRVIDLIAPIG--KGQRSLIVAPPRTGKTILLQNIAHSIK----KNHPECYLIVL-LID-ERPEEVTDMQRSV- 226 (423)
Q Consensus 156 ~p~~~~~~~id~~~pig--~gqr~~i~~~~~~gkt~ll~~ia~~~~----~~~~~v~~i~~-lig-Er~~ev~e~~~~~- 226 (423)
....||.+.+|.+.-=| .|+=.-|+|+||+|||.+..++|-+.+ ....+-.++|. -=| =+|+-+.++.+..
T Consensus 23 ~~isTg~~~LD~lLgGGi~~g~ITEi~G~~gsGKTQlc~qlav~~qlp~~~gg~~g~vvyIDTEg~f~~eRl~qia~~~~ 102 (261)
T pfam08423 23 IRITTGSKELDKLLGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRPERIVAIAERFG 102 (261)
T ss_pred CEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 35778987899873798667729999899888789999999999407096569997289993688869899999999829
Q ss_pred ------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf ------34278236678888999999999999999997799289998163898776
Q gi|254780810|r 227 ------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRA 276 (423)
Q Consensus 227 ------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA 276 (423)
...+.++..... ..+..+ +.....+....+--|+++||+|-+-|+
T Consensus 103 ~~~~~~L~~I~v~r~~~~-~~~~~~----l~~~~~~~~~~~v~LvVvDSiaalfR~ 153 (261)
T pfam08423 103 LDPEEVLDNIAYARAYNT-EHQMQL----LLQAAAMMSESRFALLIVDSATALYRT 153 (261)
T ss_pred CCHHHHHHHCEECCCCCH-HHHHHH----HHHHHHHHHCCCCEEEEEECCCEEEEE
T ss_conf 997898753314168998-999999----999999873178349998324002333
No 150
>KOG0056 consensus
Probab=95.75 E-value=0.037 Score=33.30 Aligned_cols=144 Identities=20% Similarity=0.252 Sum_probs=85.3
Q ss_pred ECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 22255688788512443000200011223432477865321368889988655102312220487787899999999998
Q gi|254780810|r 119 VNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 119 V~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
|+.++..|.-..+....|.+.+-.|.+.++.++ |.-..++-||...++||+|+||||+|.-+-+--
T Consensus 523 vd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~--------------disF~v~pGktvAlVG~SGaGKSTimRlLfRff 588 (790)
T KOG0056 523 VDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLS--------------DISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF 588 (790)
T ss_pred HCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEE--------------CCEEEECCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 138999973305770899876786489986123--------------214885699689997789886668999999994
Q ss_pred HHCCCCCEEEEEECCCCHHHHHHH-HHHHCCE------EEEC---------CCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 611886469999508787899999-9840342------7823---------66788889999999999999999977992
Q gi|254780810|r 199 KKNHPECYLIVLLIDERPEEVTDM-QRSVQGE------VISS---------TFDESAARHVQVAEMVIAKAKCLVEYGLD 262 (423)
Q Consensus 199 ~~~~~~v~~i~~ligEr~~ev~e~-~~~~~~~------vv~s---------t~d~~~~~~~~~a~~a~~~a~~~~e~G~d 262 (423)
+.|. -.+..=|+--+.||.- .|+--++ .+-. --+.+-++-+.+|..|-
T Consensus 589 dv~s----GsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~------------ 652 (790)
T KOG0056 589 DVNS----GSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQ------------ 652 (790)
T ss_pred HCCC----CEEEECCCHHHHHHHHHHHHHCCCCCCCCEEECCEEEEHEEECCCCCCHHHHHHHHHHHH------------
T ss_conf 0557----608986701788879989975683567513542100001021688997189999998755------------
Q ss_pred EEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 899981638987762001366777677752024
Q gi|254780810|r 263 VVILLDSITRLCRAYNVLMPSSGKILTGGVDAN 295 (423)
Q Consensus 263 Vll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~ 295 (423)
+-|-|+-|-..||....--|=.+|||--..
T Consensus 653 ---IHdrIl~fPegY~t~VGERGLkLSGGEKQR 682 (790)
T KOG0056 653 ---IHDRILQFPEGYNTRVGERGLKLSGGEKQR 682 (790)
T ss_pred ---HHHHHHCCCHHHHHHHHHCCCCCCCCCHHH
T ss_conf ---789886284255433200243557750356
No 151
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.74 E-value=0.0052 Score=38.91 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=39.6
Q ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 4430002000112234324778653213688899886551023122204877878999999999986
Q gi|254780810|r 133 KIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 133 ~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
...|++.+--||..+..+. - .=..|-+|++..|+|++|+|||||++-+++--.
T Consensus 322 ~I~f~nVsF~Y~~~~~~L~------------~--isl~i~~Ge~vaiVG~SGsGKSTL~~LL~r~y~ 374 (547)
T PRK10522 322 TLELRNVTFHYQDNAFSVG------------P--INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred EEEEEEEEEECCCCCCCCC------------C--EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 1899998998799987207------------8--047985998899989999977999999828966
No 152
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.72 E-value=0.011 Score=36.92 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=41.4
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE----ECCCCHHHHHHHHHHHCCEEE
Q ss_conf 655102312220487787899999999998611886469999----508787899999984034278
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL----LIDERPEEVTDMQRSVQGEVI 231 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~----ligEr~~ev~e~~~~~~~~vv 231 (423)
..|-+|+-..|+||+|+||||||..|+- +.. |+.=.+.+ +..-.+++...|++.--+-|+
T Consensus 19 l~i~~Ge~~~i~GpSGsGKSTLL~~i~g-l~~--p~sG~i~~~g~~~~~~~~~~~~~~rr~~iG~Vf 82 (206)
T TIGR03608 19 LTIEKGKMVAIVGESGSGKSTLLNIIGL-LEK--PDSGQVYLNGQETPPINSKKASKFRREKLGYLF 82 (206)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC-CCC--CCCEEEEECCEECCCCCHHHHHHHHHCCEEEEC
T ss_conf 7986998999987999709999999975-999--897599999999998998899999865889985
No 153
>PRK08118 topology modulation protein; Reviewed
Probab=95.71 E-value=0.014 Score=36.06 Aligned_cols=52 Identities=6% Similarity=0.088 Sum_probs=33.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 3122204877878999999999986118864699995087878999999840
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV 226 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~ 226 (423)
+|.+|+|.||+|||||...++......+-+...++-.=|=.+..-.||.+.+
T Consensus 2 ~rI~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~l~w~~~w~~~~~~e~~~~~ 53 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQRTVQ 53 (167)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCEEECCCCCCCCHHHHHHHH
T ss_conf 6799988999879999999999889697964434766899468889999999
No 154
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=95.69 E-value=0.05 Score=32.48 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=76.0
Q ss_pred CCHHHHHCCCCHH-HCCCCCCCCCCCCCCCCC---------CCCCHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHH
Q ss_conf 8878851244300-020001122343247786---------532136888998865510231-22204877878999999
Q gi|254780810|r 125 DVPERVRNKIHFD-NLTPLYPDKRFNMELNNP---------ENKDISSRVIDLIAPIGKGQR-SLIVAPPRTGKTILLQN 193 (423)
Q Consensus 125 ~~~d~~~~~~~f~-~l~p~~p~~~i~le~~~~---------~p~~~~~~~id~~~pig~gqr-~~i~~~~~~gkt~ll~~ 193 (423)
.|.|-.+. .|+ .+||+-++|-|..|.+-. +-..+|-.-.|.+.---.-.| .+|+||-|+|||||..-
T Consensus 81 LPldflGs--RFeGl~PPVV~~p~F~IRkkA~~vfTLDdYV~~gimtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaNA 158 (315)
T TIGR02782 81 LPLDFLGS--RFEGLLPPVVEAPSFAIRKKAVRVFTLDDYVEAGIMTAAQRDVLREAVAARKNILVVGGTGSGKTTLANA 158 (315)
T ss_pred CCCCHHHC--CCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
T ss_conf 75111201--1004687755655101110224104707776404455789999999997129889981458857999999
Q ss_pred HHHHHHH-CCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCC
Q ss_conf 9999861-18864699995087878999999840342782366788
Q gi|254780810|r 194 IAHSIKK-NHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDES 238 (423)
Q Consensus 194 ia~~~~~-~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~ 238 (423)
+..-|.. +.|+--+|++ |=.+|..=-- +-.|..-|+|.-
T Consensus 159 lla~I~~l~~P~dR~vIi---EDT~ElQC~A---~N~V~lrT~d~~ 198 (315)
T TIGR02782 159 LLAEIAKLNDPDDRVVII---EDTAELQCAA---ENLVALRTSDDV 198 (315)
T ss_pred HHHHHHHCCCCCCEEEEE---ECCHHHHHCC---CCEEEEECCCCC
T ss_conf 999885216999618998---5471320137---870687448986
No 155
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.0072 Score=37.99 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=27.1
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8655102312220487787899999999998
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
-..|-+|+...|+||+|+||||++.+|+.-.
T Consensus 21 sl~i~~Ge~~~ilGpSG~GKSTllr~i~gl~ 51 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 7688699899999999956999999997599
No 156
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.66 E-value=0.18 Score=28.87 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=63.4
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHH-HHCCCCCEEEEEECCC-CHHHHH---HHHHHHCCEEEECCCCCCHHHHHH
Q ss_conf 55102312220487787899999999998-6118864699995087-878999---999840342782366788889999
Q gi|254780810|r 170 PIGKGQRSLIVAPPRTGKTILLQNIAHSI-KKNHPECYLIVLLIDE-RPEEVT---DMQRSVQGEVISSTFDESAARHVQ 244 (423)
Q Consensus 170 pig~gqr~~i~~~~~~gkt~ll~~ia~~~-~~~~~~v~~i~~ligE-r~~ev~---e~~~~~~~~vv~st~d~~~~~~~~ 244 (423)
+...|....++||.|+||||.+-.||... ..+.+.-+.++ -+|- |---|- -|.+-..-.+. ..+.|...+-
T Consensus 206 ~~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lI-T~DtyRigA~eQLk~Ya~ilgvp~~--v~~~~~~l~~- 281 (412)
T PRK05703 206 ILEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALI-TLDTYRIGAVEQLKTYAKIMGIPVK--VAYDPKELAK- 281 (412)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-EECCCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHH-
T ss_conf 54567369998888875676999999999997299817999-8376777799999999997197379--8479999999-
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEE
Q ss_conf 99999999999997799289998163898776200136677767775202466504687522577777785001211201
Q gi|254780810|r 245 VAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALV 324 (423)
Q Consensus 245 ~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lv 324 (423)
++. + -..+| +||+|. .|+.+ .+...+...+.|+......+ .+.||.
T Consensus 282 ----al~---~--~~~~d-lILIDT--------------aG~s~---~d~~~~~eL~~~~~~~~~~~-------~~LVls 327 (412)
T PRK05703 282 ----ALE---Q--LANCD-LILIDT--------------AGRSQ---RDPRLISELKALIENSKPID-------VYLVLS 327 (412)
T ss_pred ----HHH---H--HCCCC-EEEEEC--------------CCCCC---CCHHHHHHHHHHHHHCCCCC-------EEEEEC
T ss_conf ----998---7--15899-799968--------------98897---89999999999986248871-------899975
Q ss_pred CCCC--CCCCHHHHHHHHCCCCEEEEEH
Q ss_conf 2676--5541388988522660789808
Q gi|254780810|r 325 DTGS--RMDEVIFEEFKGTGNSEIVLER 350 (423)
Q Consensus 325 etg~--~~d~~i~~~~~~~~d~~i~L~r 350 (423)
-|.+ ++. -|++.|....--.+++.+
T Consensus 328 at~~~~dl~-~i~~~f~~~~~~~lI~TK 354 (412)
T PRK05703 328 ATTKYRDLK-DIVKHFSRLPLDGLILTK 354 (412)
T ss_pred CCCCHHHHH-HHHHHHCCCCCCEEEEEE
T ss_conf 989989999-999984679998799971
No 157
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.0076 Score=37.84 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=26.1
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
..+.+|+...|+||+|+|||||++.|+.-
T Consensus 19 l~i~~Ge~~~ilGpSGsGKSTLl~li~Gl 47 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89889989999999995599999999769
No 158
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.64 E-value=0.0066 Score=38.25 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=27.8
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 886551023122204877878999999999986
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
.-..|.+|+|.+|+|+.|+|||||++.|+--+.
T Consensus 331 vsl~i~~GeriaIvG~NGsGKSTLlk~L~G~l~ 363 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA 363 (638)
T ss_pred CCCEECCCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 750563784799974787138899999728878
No 159
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.0069 Score=38.12 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999996126
Q gi|254780810|r 381 QKVFMLRRIVSSM 393 (423)
Q Consensus 381 ~~~~~~r~~l~~~ 393 (423)
+..+.+++.+.+.
T Consensus 556 ~~~~~~~~~~~~~ 568 (638)
T PRK10636 556 TQTQPLRKEIARL 568 (638)
T ss_pred HHHHHHHHHHHHH
T ss_conf 7647999999999
No 160
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=95.62 E-value=0.1 Score=30.47 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=87.5
Q ss_pred EEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEE----CCCCCCCCCCEEECCCCCCC
Q ss_conf 48999998540477026750454866665560460100001221259879998862----46888763000222255688
Q gi|254780810|r 51 EIIGEGVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRA----PREGERYFALLKVNAINFDV 126 (423)
Q Consensus 51 ~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~----~~~~~~~~~L~rV~~vnG~~ 126 (423)
+....-++|+++|.--.+.+ ..+|.=++-...++....|++|..|.-..+. -..|..+..+..-..|..+|
T Consensus 43 P~~~~~V~~~~~~~rvvVks-----~tGP~fvv~~~~~i~~~~L~PG~~VaLn~~t~~iV~vLP~~kDp~v~~~EV~E~P 117 (364)
T TIGR01242 43 PLIVGTVVEVLDDDRVVVKS-----STGPKFVVNVSAFIDRKELKPGARVALNQQTLAIVDVLPTSKDPLVKGMEVEERP 117 (364)
T ss_pred CEEEEEEEEEECCCEEEEEC-----CCCCEEEEEHHCCCCHHHCCCCCEEEECCCCEEEEEECCCCCCCEEEEEEEECCC
T ss_conf 82788754321486379963-----7985000000012362026886567423784289984678878657877762178
Q ss_pred HHHHHCCCCHH-HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 78851244300-0200011223432477865321368889988655102--31222048778789999999999861188
Q gi|254780810|r 127 PERVRNKIHFD-NLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKG--QRSLIVAPPRTGKTILLQNIAHSIKKNHP 203 (423)
Q Consensus 127 ~d~~~~~~~f~-~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~g--qr~~i~~~~~~gkt~ll~~ia~~~~~~~~ 203 (423)
--.+..+...+ ++.=++-+=-+.+.. =.+|.-+|-- .=.|++||||+|||-|++.+|...++-+=
T Consensus 118 ~V~y~diGGL~~Q~~E~~E~v~LPlk~------------PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~et~ATFI 185 (364)
T TIGR01242 118 NVSYEDIGGLEKQIREIREAVELPLKK------------PELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI 185 (364)
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCCC------------CHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEE
T ss_conf 233402678789999998887346888------------31677628898986570075797688999986314551268
Q ss_pred CCE---EEEEECCCCHHHHHHHHH
Q ss_conf 646---999950878789999998
Q gi|254780810|r 204 ECY---LIVLLIDERPEEVTDMQR 224 (423)
Q Consensus 204 ~v~---~i~~ligEr~~ev~e~~~ 224 (423)
-|+ ++-=-|||=.+=|.|.-+
T Consensus 186 rvVgSElV~KyIGEGArLV~~~F~ 209 (364)
T TIGR01242 186 RVVGSELVRKYIGEGARLVREVFE 209 (364)
T ss_pred EEEHHHHHHHHHCCHHHHHHHHHH
T ss_conf 860444444441331689999999
No 161
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.60 E-value=0.0073 Score=37.94 Aligned_cols=47 Identities=38% Similarity=0.572 Sum_probs=34.6
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 0002000112234324778653213688899886551023122204877878999999999
Q gi|254780810|r 136 FDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 136 f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
|++++--||+.+..++ |.-..|.+|++.+|+|++|+|||||++.|+.
T Consensus 3 ~~nvsf~y~~~~~il~--------------~isl~i~~Ge~v~i~G~sGsGKSTLl~~l~G 49 (166)
T cd03223 3 LENLSLATPDGRVLLK--------------DLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred EEEEEEECCCCCEEEE--------------EEEEEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 9899998899998894--------------4588988999999995899988999999869
No 162
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.59 E-value=0.19 Score=28.71 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 88899886551023122204877878999999999986118864699995087878999999
Q gi|254780810|r 162 SRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQ 223 (423)
Q Consensus 162 ~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~ 223 (423)
..++-...+---++-.-|.|++|+|||.|++.++....... ..++|+-.++...-..++.
T Consensus 33 ~~al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~--~~~~yl~~~~~~~~~~~~l 92 (235)
T PRK08084 33 LAALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQRG--DAVGYVPLDKRAWFVPEVL 92 (235)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCEEEEEHHHHHHHHHHHH
T ss_conf 99999998578987699989999888999999999997079--8579987798665179999
No 163
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.58 E-value=0.0081 Score=37.67 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=72.4
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC---------------------------------
Q ss_conf 86551023122204877878999999999986118864699995087---------------------------------
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE--------------------------------- 214 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE--------------------------------- 214 (423)
-..|..|+-..|+||+|+||||+|.+||- ... |+.=-|. +=|+
T Consensus 24 ~l~v~~Ge~~~llGpSG~GKtTlLr~iaG-l~~--p~~G~I~-~~g~~v~~~~p~~R~ig~VfQ~~aLfPh~tV~eNiaf 99 (353)
T TIGR03265 24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LER--QTAGTIY-QGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAY 99 (353)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHC-CCC--CCCEEEE-ECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 86998999999999995359999999976-999--9873999-9999999999525885999788854678929999988
Q ss_pred -----------CHHHHHHHHHHHC-----------------------------CEEEECCCCCCHHH--HHHHHHHHHHH
Q ss_conf -----------8789999998403-----------------------------42782366788889--99999999999
Q gi|254780810|r 215 -----------RPEEVTDMQRSVQ-----------------------------GEVISSTFDESAAR--HVQVAEMVIAK 252 (423)
Q Consensus 215 -----------r~~ev~e~~~~~~-----------------------------~~vv~st~d~~~~~--~~~~a~~a~~~ 252 (423)
+.+.|.++.+.+. ..++ -+|||-.. ...-.++-.+.
T Consensus 100 gl~~~~~~~~e~~~rv~~~l~~~~l~~~~~r~p~~LSGGq~QRVAlARAL~~~P~vl--LlDEPlsaLD~~lr~~l~~~l 177 (353)
T TIGR03265 100 GLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLL--LLDEPLSALDARVREHLRTEI 177 (353)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEE--EEECCCCCCCHHHHHHHHHHH
T ss_conf 998769999999999999998769955765696468988879999999985499899--990876535999999999999
Q ss_pred HHHHHHCCCCEEEEEECHHH-HHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHH
Q ss_conf 99999779928999816389-87762001366777677752024665046875
Q gi|254780810|r 253 AKCLVEYGLDVVILLDSITR-LCRAYNVLMPSSGKILTGGVDANALQRPKRFF 304 (423)
Q Consensus 253 a~~~~e~G~dVll~~DslTR-~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~ 304 (423)
.+-..+.|.-++++--+..- ++.|-|.+....|+..--|-+...++.|...|
T Consensus 178 ~~l~~~~~~T~i~VTHD~~EA~~laDri~Vm~~G~i~q~G~p~eiy~~P~~~f 230 (353)
T TIGR03265 178 RQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred HHHHHHHCCEEEEECCCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCHH
T ss_conf 99999869989999989899998699899998999999828899986899869
No 164
>PRK07261 topology modulation protein; Provisional
Probab=95.57 E-value=0.014 Score=36.09 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=34.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 122204877878999999999986118864699995087878999999840
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV 226 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~ 226 (423)
|.+|+|.||+|||||+..++.-..-.+-....++-.=|-..+.-.||.+.+
T Consensus 2 rI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w~p~w~~~~~~e~~~~~ 52 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHFSSNWQERDDDDMIADI 52 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEECCCCEECCHHHHHHHH
T ss_conf 899988999868999999999879797970227888999888899999999
No 165
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.0088 Score=37.41 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=26.1
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
+.|-+|.-..|+||+|+||||+++.|+.-
T Consensus 21 ~~i~~Ge~~~ivGpSG~GKSTllr~i~Gl 49 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 69889989999999998399999999859
No 166
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.56 E-value=0.024 Score=34.55 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=67.2
Q ss_pred CCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 88788512443000200011223432477865321368889988655102312220487787899999999998611886
Q gi|254780810|r 125 DVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPE 204 (423)
Q Consensus 125 ~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~ 204 (423)
.++..+..+-+.+++-.....+|+..- +.++ .+.+-.+|.=.+.+||||+|||.|.+.||++....
T Consensus 311 ~dl~~A~~iLd~dHyGL~~vKeRile~--------lAv~---~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~--- 376 (784)
T PRK10787 311 KDLRQAQEILDTDHYGLERVKDRILEY--------LAVQ---SRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--- 376 (784)
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHH--------HHHH---HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---
T ss_conf 699999998765430657799999999--------9999---86246778779964699877246999999985898---
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH
Q ss_conf 46999950878789999998403427823667888899999999999999999779928999816389877620
Q gi|254780810|r 205 CYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYN 278 (423)
Q Consensus 205 v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~ 278 (423)
++-+-|=|=|-+. |..-.-++-|- .-|.+-+++ +-.| .-+|=|+++|-|-+++.-||
T Consensus 377 -f~rislGGv~Dea--eirGHrrTYvg-----ampGrii~~----l~~a-----~~~nPv~llDEiDK~~~~~~ 433 (784)
T PRK10787 377 -YVRMALGGVRDEA--EIRGHRRTYIG-----SMPGKLIQK----MAKV-----GVKNPLFLLDEIDKMSSDMR 433 (784)
T ss_pred -EEEEECCCCCCHH--HHCCCCCCCCC-----CCCHHHHHH----HHHH-----CCCCCEEEEHHHHHHCCCCC
T ss_conf -6998068878888--82564334344-----368389999----9974-----89885665003555224558
No 167
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.55 E-value=0.0089 Score=37.38 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=25.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..+-+|....|+||+|+|||||+.+|+-
T Consensus 21 l~v~~Ge~~~iiGpSGsGKSTllr~i~G 48 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAG 48 (232)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 4887998999999999839999999977
No 168
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.55 E-value=0.013 Score=36.37 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=28.1
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999861
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
+.|-+|++.+|+|++|+|||||++.|..-...
T Consensus 29 l~i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p 60 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 89869999999999998799999999987288
No 169
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.54 E-value=0.0078 Score=37.75 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=25.5
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..|.+|+-..|+||+|+||||+|.+||-
T Consensus 27 l~i~~Ge~~~llGpSG~GKTTlLr~iaG 54 (351)
T PRK11432 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 4988998999999996499999999976
No 170
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.53 E-value=0.0088 Score=37.42 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=28.1
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 886551023122204877878999999999986
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
.=..|-+|+..+|+||+|+|||||++.|+.-..
T Consensus 24 Isl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~ 56 (228)
T cd03257 24 VSFSIKKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 078986998999999999869999999972898
No 171
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.53 E-value=0.014 Score=36.08 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=48.8
Q ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE-ECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 44300020001122343247786532136888998865510231222-04877878999999999986118864699995
Q gi|254780810|r 133 KIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLI-VAPPRTGKTILLQNIAHSIKKNHPECYLIVLL 211 (423)
Q Consensus 133 ~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i-~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~l 211 (423)
--.|+++-+..+..+ ..+.+..+..+-|. .|..++| .|+||+|||.|+.-||+.+......|..+.
T Consensus 65 ~~~Feny~~~~~~q~--------~al~~a~~y~enf~---~~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t-- 131 (242)
T PRK07952 65 NCSFENYRVECEGQM--------NALSKARQYVEEFD---GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-- 131 (242)
T ss_pred CCEEECEECCCHHHH--------HHHHHHHHHHHHHC---CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE--
T ss_conf 884212015877789--------99999999998654---38871799789999789999999999998799499977--
Q ss_pred CCCCHHHHHHHHHHHCC
Q ss_conf 08787899999984034
Q gi|254780810|r 212 IDERPEEVTDMQRSVQG 228 (423)
Q Consensus 212 igEr~~ev~e~~~~~~~ 228 (423)
+.|+...++.
T Consensus 132 -------~~dLl~~lr~ 141 (242)
T PRK07952 132 -------VADIMSAMKD 141 (242)
T ss_pred -------HHHHHHHHHH
T ss_conf -------9999999999
No 172
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.0087 Score=37.46 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=25.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
+.|-+|+..+|+||+|+|||||++.|+-
T Consensus 25 l~i~~Ge~~~iiGpsGsGKSTLl~~i~G 52 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8987998999999999579999999975
No 173
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.52 E-value=0.2 Score=28.55 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=42.3
Q ss_pred HHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf 36888998865-510231222048778789999999999861188646999950878789999
Q gi|254780810|r 160 ISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTD 221 (423)
Q Consensus 160 ~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e 221 (423)
..-..+|-++- +.+|+=..|.|.|++|||+++.++|.++..++ ...+.+...-+.++++..
T Consensus 15 ~pf~~LD~~~~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~-g~~vl~~SlEm~~~~~~~ 76 (271)
T cd01122 15 WPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEEPVVRTAR 76 (271)
T ss_pred CCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHH
T ss_conf 88166888737999980899996899869999999999999976-990899970499999999
No 174
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.50 E-value=0.0091 Score=37.32 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=25.1
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..|.+|.-..|+||+|+||||||.+||-
T Consensus 26 l~i~~GE~~~llGpSG~GKTTlLr~iaG 53 (362)
T TIGR03258 26 LEIEAGELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 1999998999999997459999999977
No 175
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.0089 Score=37.41 Aligned_cols=63 Identities=22% Similarity=0.322 Sum_probs=40.2
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE---EC-CCCHHHHHHHHHHHCCEEEEC
Q ss_conf 8655102312220487787899999999998611886469999---50-878789999998403427823
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL---LI-DERPEEVTDMQRSVQGEVISS 233 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~---li-gEr~~ev~e~~~~~~~~vv~s 233 (423)
=..|.+|....|+||+|+|||||+..|+.-.. |+.=-|.+ -| +-.+++..++.+.--+.|+-+
T Consensus 44 sl~i~~GE~~~ivG~SGsGKSTLLr~i~GL~~---p~~G~I~~~G~~i~~~~~~~l~~~r~~~igmVFQ~ 110 (269)
T cd03294 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC---CCCEEEEECCEECCCCCHHHHHHHHCCCEEEEEEC
T ss_conf 75888999999998998489999999975999---99759999999999999899988525646999615
No 176
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=95.48 E-value=0.042 Score=32.94 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=38.5
Q ss_pred HHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 36888998865-51023122204877878999999999986118864699995087
Q gi|254780810|r 160 ISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE 214 (423)
Q Consensus 160 ~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE 214 (423)
.....++.+.| -|+..|.+|-++||+|||||+..++........ .+-|+.||-
T Consensus 34 ~~~~ll~~l~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~--~v~vlavDP 87 (325)
T PRK09435 34 LAQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGH--KVAVLAVDP 87 (325)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC--EEEEEEECC
T ss_conf 999999986301798259974279998688999999999996798--589999789
No 177
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.48 E-value=0.2 Score=28.45 Aligned_cols=93 Identities=16% Similarity=0.070 Sum_probs=65.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 02312220487787899999999998611886469999508787899999984034278236678888999999999999
Q gi|254780810|r 173 KGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 173 ~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~ 252 (423)
+|.-.-+.|-||+|||||...+.+.+...... + ++|=| .+++..... .-+-+...|..-.......
T Consensus 3 kg~viWltGlsgSGKTTia~~l~~~L~~~~~~--~-~~LDG---D~lR~~l~~--------~lgfs~~dR~~n~~r~~~l 68 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTISHALAEKLRARGYP--V-EVLDG---DIVRTNLSK--------GLGFSKEDRDTNIRRIGFV 68 (175)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC--E-EEECC---HHHHHHHCC--------CCCCCHHHHHHHHHHHHHH
T ss_conf 88899988989999999999999999986996--7-99776---888875367--------8898989999999999999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHC
Q ss_conf 999997799289998163898776200
Q gi|254780810|r 253 AKCLVEYGLDVVILLDSITRLCRAYNV 279 (423)
Q Consensus 253 a~~~~e~G~dVll~~DslTR~ArA~~~ 279 (423)
|+.+.++|..|++=.=|..+-.|+.+-
T Consensus 69 a~~l~~~g~~vIvs~isp~~~~R~~~r 95 (175)
T PRK00889 69 AHLLTRHGVIVLVSAISPYRETREEVR 95 (175)
T ss_pred HHHHHHCCCEEEEEECCCCHHHHHHHH
T ss_conf 999981898688850479999999999
No 178
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.46 E-value=0.01 Score=36.99 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=25.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..|-+|.-..|+||+|+||||||+.|+-
T Consensus 21 l~v~~Ge~~~i~GpSG~GKSTlLr~iaG 48 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7986998999999998809999999976
No 179
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.45 E-value=0.0093 Score=37.27 Aligned_cols=35 Identities=26% Similarity=0.505 Sum_probs=28.9
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 98865510231222048778789999999999861
Q gi|254780810|r 166 DLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 166 d~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
|.-..|-+|+|.+|+|+.|+|||||++.|+--+..
T Consensus 337 ~vsl~i~~Ge~ialvG~NGsGKSTLlk~l~G~l~p 371 (632)
T PRK11147 337 DFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA 371 (632)
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 53333578877999889884277999986066689
No 180
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.42 E-value=0.011 Score=36.77 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.4
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..|-.|.-.-++||+|+||||+|.+||-
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 8974797999989998888999999968
No 181
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.41 E-value=0.0096 Score=37.18 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=26.5
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 865510231222048778789999999999
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
=+.|-+|+..+|+|++|+|||||++.|+.-
T Consensus 30 sl~i~~GE~v~ivG~sGsGKSTLl~~i~Gl 59 (228)
T PRK10584 30 ELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889999989999999985899999999669
No 182
>KOG0727 consensus
Probab=95.41 E-value=0.066 Score=31.66 Aligned_cols=104 Identities=22% Similarity=0.348 Sum_probs=57.7
Q ss_pred HHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE---EEEECCCCHHHHHHHHHHHC----CEEEECC-
Q ss_conf 998865510--2312220487787899999999998611886469---99950878789999998403----4278236-
Q gi|254780810|r 165 IDLIAPIGK--GQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYL---IVLLIDERPEEVTDMQRSVQ----GEVISST- 234 (423)
Q Consensus 165 id~~~pig~--gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~---i~~ligEr~~ev~e~~~~~~----~~vv~st- 234 (423)
-|+.--||- -+-.+.++|||+|||+|.+..|++..+.+--|+- +---.||-||-|+|.-|.-+ +.++.-.
T Consensus 178 ~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifidei 257 (408)
T KOG0727 178 ADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEI 257 (408)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCHHEEEECCHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEHH
T ss_conf 88999708899862277579997578999998612611144630189999985548389999999876169837986224
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHHH--HHCCCCEEEEEE
Q ss_conf -------6788889999999999999999--977992899981
Q gi|254780810|r 235 -------FDESAARHVQVAEMVIAKAKCL--VEYGLDVVILLD 268 (423)
Q Consensus 235 -------~d~~~~~~~~~a~~a~~~a~~~--~e~G~dVll~~D 268 (423)
||.......-+-..-++.---+ -++.-||-++|-
T Consensus 258 daiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvima 300 (408)
T KOG0727 258 DAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMA 300 (408)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 5676641244446318999999999975147676665589983
No 183
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.41 E-value=0.01 Score=36.95 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=26.7
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9886551023122204877878999999999
Q gi|254780810|r 166 DLIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 166 d~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
|.-+.|-+|.|.+|+|+.|+|||||++.|+-
T Consensus 342 ~vs~~i~~Ge~iaivG~NGsGKSTLlk~l~G 372 (556)
T PRK11819 342 DLSFKLPPGGIVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 6402357882478988987758899999838
No 184
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.41 E-value=0.011 Score=36.84 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=27.3
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 6551023122204877878999999999986
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
+.|-+|+..+|+||+|+|||||++.|+.-..
T Consensus 20 l~i~~GE~v~iiG~nGaGKSTLl~~i~Gll~ 50 (233)
T PRK10771 20 LTVERGEQVAILGPSGAGKSTLLNLIAGFLT 50 (233)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8988998999999999819999999965999
No 185
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.01 Score=37.04 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=23.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..|.+|+...|+||+|+|||||+++|+-
T Consensus 25 l~i~~Ge~~~llGpsG~GKTTllr~iaG 52 (358)
T PRK11650 25 LDVADGEFIVLVGPSGCGKSTLLRMVAG 52 (358)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7988998999999986369999999976
No 186
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.39 E-value=0.019 Score=35.18 Aligned_cols=198 Identities=17% Similarity=0.311 Sum_probs=97.0
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCH-HH--HHHHHHHH---C--CEEEECC-----
Q ss_conf 8655102312220487787899999999998611886469999508787-89--99999840---3--4278236-----
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERP-EE--VTDMQRSV---Q--GEVISST----- 234 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~-~e--v~e~~~~~---~--~~vv~st----- 234 (423)
=..|-+|++.+|+|++|+|||||++-+.+-...+.-.+ +||..+ ++ ..++.+.+ . ...+..|
T Consensus 335 sl~I~~Ge~vaIVG~SGsGKSTLl~LL~g~y~p~~G~I-----~idg~di~~i~~~~lR~~I~~V~Q~~~LF~~TI~eNI 409 (569)
T PRK10789 335 NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-----RFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNI 409 (569)
T ss_pred CCEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCE-----EEECEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 56888997899879999987999999997764267874-----6501013425768886314765887502566299998
Q ss_pred -CCC--CHHHHH-HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCC
Q ss_conf -678--888999-9999999999999977992899981638987762001366777677752024665046875225777
Q gi|254780810|r 235 -FDE--SAARHV-QVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNI 310 (423)
Q Consensus 235 -~d~--~~~~~~-~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~ 310 (423)
+.. .....+ .+++.+. +.|.+.++-..|.......|..+|||--.. . .-||..
T Consensus 410 ~lg~~~~~~eei~~a~~~a~---------------l~~~i~~lp~G~dT~ige~G~~LSGGQrQR------i--alARAl 466 (569)
T PRK10789 410 ALGRPDATQQEIEHVARLAS---------------VHEDILRLPQGYDTEVGERGVMLSGGQKQR------I--SIARAL 466 (569)
T ss_pred HCCCCCCCHHHHHHHHHHHH---------------HHHHHHCCCCCCCCCCCCCCCCCCHHHHHH------H--HHHHHH
T ss_conf 65797765458999999855---------------568764375532371268889969999999------9--999999
Q ss_pred CCCCCCEEE--EEEEECCCCCCCCHHHHHHHHCCC--CEEEEEHHHHHCCCCCCCCCCCCCC-----CCHHHCCCHHHHH
Q ss_conf 777850012--112012676554138898852266--0789808788479997405335422-----1015519999999
Q gi|254780810|r 311 KEGGSLTII--GTALVDTGSRMDEVIFEEFKGTGN--SEIVLERKIADKRIFPAMDIIKSGT-----RKEDLLVERQDLQ 381 (423)
Q Consensus 311 ~~~Gs~T~~--~t~lvetg~~~d~~i~~~~~~~~d--~~i~L~r~la~~~~~PAId~~~S~s-----R~~~~l~~~~~~~ 381 (423)
=..-.+-++ +|.=+|+ .-..-|.+.++.... .-|+-.-.|.--...--|=|+.-|- ..+|++.....+.
T Consensus 467 l~~p~iliLDEaTSaLD~--~tE~~i~~~l~~~~~~~T~i~IaHRlsti~~aD~I~vl~~G~ive~Gth~eLl~~~g~Y~ 544 (569)
T PRK10789 467 LLNAEILILDDALSAVDG--RTEHQILHNLRQWGEGRTVIISAHRLSALTEASEIIVMQHGHIAQRGNHDQLAQQSGWYR 544 (569)
T ss_pred HCCCCEEEECCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
T ss_conf 549998998087666899--999999999999749998999715888898599899998988999727999985899899
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999612693
Q gi|254780810|r 382 KVFMLRRIVSSMNS 395 (423)
Q Consensus 382 ~~~~~r~~l~~~~~ 395 (423)
..|.....=+..++
T Consensus 545 ~l~~~Q~~~~~~~~ 558 (569)
T PRK10789 545 DMYRYQQLEAALDD 558 (569)
T ss_pred HHHHHHHCCCCCCC
T ss_conf 99999851243336
No 187
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.01 Score=36.95 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=27.1
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8865510231222048778789999999999
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
.=..+.+|.-..|+||+|+|||||+++|+--
T Consensus 18 vs~~v~~Ge~~~iiGpSGsGKSTLlr~i~Gl 48 (235)
T cd03299 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 4879889989999999963599999999749
No 188
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=95.38 E-value=0.22 Score=28.24 Aligned_cols=128 Identities=26% Similarity=0.297 Sum_probs=84.2
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC-CHHHH---HHHHHHHCCEEEECC-C-CCCHHHHHHH
Q ss_conf 1023122204877878999999999986118864699995087-87899---999984034278236-6-7888899999
Q gi|254780810|r 172 GKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE-RPEEV---TDMQRSVQGEVISST-F-DESAARHVQV 245 (423)
Q Consensus 172 g~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE-r~~ev---~e~~~~~~~~vv~st-~-d~~~~~~~~~ 245 (423)
.+.-=.++||==|+||||-+..+|+...+.+..|.+ +.-|- |.--+ ..|.+.+-..||..+ . .+|| .+
T Consensus 80 ~kp~Vil~VGVNG~GKTTTIaKLA~~l~~~Gk~V~l--aAgDTFRAAA~EQL~~Wa~R~gv~vi~~~~gn~DPA----aV 153 (284)
T TIGR00064 80 KKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLL--AAGDTFRAAAIEQLEVWAKRLGVDVIKQKEGNADPA----AV 153 (284)
T ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEE--ECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCH----HH
T ss_conf 897799998440886010288999999874990899--827524799999999989883875540788988717----89
Q ss_pred HHHHHHHHHHHHHCCCCEEE------------EEECHHHHHHHHHCCCC---CCCCCCCC--CCCHHHHHHCHHHHHCCC
Q ss_conf 99999999999977992899------------98163898776200136---67776777--520246650468752257
Q gi|254780810|r 246 AEMVIAKAKCLVEYGLDVVI------------LLDSITRLCRAYNVLMP---SSGKILTG--GVDANALQRPKRFFGAAR 308 (423)
Q Consensus 246 a~~a~~~a~~~~e~G~dVll------------~~DslTR~ArA~~~~~~---~~g~~~~g--g~~~~~l~~~~~~~~~ar 308 (423)
+|=|+..|+ .+|.|||| |||=|-+-.|-..-..+ |.-..+-. -.-.+++.-.+.|-++..
T Consensus 154 ~fDAi~~Ak---~~niDvvliDTAGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVlDAt~Gqna~~QA~~F~eav~ 230 (284)
T TIGR00064 154 IFDAIQAAK---ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVLDATTGQNALEQAKVFNEAVG 230 (284)
T ss_pred HHHHHHHHH---HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCC
T ss_conf 999899998---74997899734754546620399999999987321025787557542202220308999999865406
No 189
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=95.38 E-value=0.03 Score=33.94 Aligned_cols=52 Identities=21% Similarity=0.466 Sum_probs=38.4
Q ss_pred HHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 6888998865-51023122204877878999999999986118864699995087
Q gi|254780810|r 161 SSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE 214 (423)
Q Consensus 161 ~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE 214 (423)
....++.+.| -|+..|.+|-++||+|||||+..++........ .+-|+.||-
T Consensus 15 ~~~ll~~~~~~~g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~--~vaVlAvDP 67 (267)
T pfam03308 15 ARELLRRLMPLTGRAHRVGITGVPGAGKSTLIEALGMELRRRGH--RVAVLAVDP 67 (267)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC--EEEEEEECC
T ss_conf 99999998743599559987689988799999999999996898--689999789
No 190
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.34 E-value=0.0086 Score=37.48 Aligned_cols=135 Identities=23% Similarity=0.231 Sum_probs=72.4
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE-------------------------------------EE
Q ss_conf 88655102312220487787899999999998611886469-------------------------------------99
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYL-------------------------------------IV 209 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~-------------------------------------i~ 209 (423)
.=..|.+|--..+.||||+||||+|.+||- ..+ |+.-- -+
T Consensus 24 isl~i~~Gef~tlLGPSGcGKTTlLR~IAG-fe~--p~~G~I~l~g~~i~~lpp~kR~ig~VFQ~YALFPHmtV~~NVaf 100 (352)
T COG3842 24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAG-FEQ--PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAF 100 (352)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCC--CCCCEEEECCEECCCCCHHHCCCCEEECCCCCCCCCCHHHHHHH
T ss_conf 144544886899989988888999999967-778--88865999999988899422652326067666888858997553
Q ss_pred EEC--C-----CCHHHHHHHHHHHCC---------------------------EEEECCCCCCHHH--HHHHHHHHHHHH
Q ss_conf 950--8-----787899999984034---------------------------2782366788889--999999999999
Q gi|254780810|r 210 LLI--D-----ERPEEVTDMQRSVQG---------------------------EVISSTFDESAAR--HVQVAEMVIAKA 253 (423)
Q Consensus 210 ~li--g-----Er~~ev~e~~~~~~~---------------------------~vv~st~d~~~~~--~~~~a~~a~~~a 253 (423)
.|= + |..+.|.++.+.+.- +--+--.|||-.. .-.=-+|-.+.-
T Consensus 101 GLk~~~~~~~~ei~~rV~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk 180 (352)
T COG3842 101 GLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELK 180 (352)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHCHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 33105778778999999999987485444442766648278999999997421835443427400231899999999999
Q ss_pred HHHHHCCCCEEEE-EECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHH
Q ss_conf 9999779928999-81638987762001366777677752024665046875
Q gi|254780810|r 254 KCLVEYGLDVVIL-LDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFF 304 (423)
Q Consensus 254 ~~~~e~G~dVll~-~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~ 304 (423)
+...+.|.-.+.+ =|----++++-|.+.-..|+..--|-+......|...|
T Consensus 181 ~lq~~~giT~i~VTHDqeEAl~msDri~Vm~~G~I~Q~gtP~eiY~~P~~~f 232 (352)
T COG3842 181 ELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRF 232 (352)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHCCCEEECCCCCEEECCCHHHHHHCCCHHH
T ss_conf 9998559729999789899863236227821770432288789752802688
No 191
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.34 E-value=0.011 Score=36.69 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=28.0
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999861
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
..|-+|++..|+||+|+|||||++-+.+-.+-
T Consensus 362 l~i~~Ge~vaiVG~SGsGKSTL~~LL~r~ydp 393 (575)
T PRK11160 362 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP 393 (575)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 89769988999889997599999998623678
No 192
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.33 E-value=0.013 Score=36.25 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=27.8
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999861
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
+.|-+|++.+|+|++|+|||||++.|+.-...
T Consensus 23 l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p 54 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 99869999999999987599999999861766
No 193
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.32 E-value=0.013 Score=36.39 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=27.6
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 88655102312220487787899999999998
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
.-+.|-+|++.+|+|++|+|||||++.|.+-.
T Consensus 22 isl~i~~G~~iaIvG~sGsGKSTLl~ll~gl~ 53 (238)
T cd03249 22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 58997699999999999998999999982386
No 194
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.31 E-value=0.018 Score=35.34 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=34.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 655102312220487787899999999998611886469999508787899999984
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRS 225 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~ 225 (423)
+.|.+|...+|+||+|+|||||++.|+.-...+.-++.+--.-|........++.+.
T Consensus 22 ~~i~~Ge~~~liG~nGsGKSTll~~i~Gl~~~~~G~i~~~G~~i~~~~~~~~~~r~~ 78 (240)
T PRK09493 22 LNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHH
T ss_conf 898799899999999980999999996389999974878999878876658998752
No 195
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.31 E-value=0.012 Score=36.65 Aligned_cols=65 Identities=23% Similarity=0.254 Sum_probs=38.9
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHHCCEEE
Q ss_conf 88655102312220487787899999999998611886469999-508787899999984034278
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSVQGEVI 231 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~~~~vv 231 (423)
.-+.+.+|+..+|+||+|+|||||+++|+.-...+.-.+.+--- +-...+++...+.+.--+.|+
T Consensus 23 isl~i~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~~Ig~v~ 88 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVF 88 (218)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCEEEEC
T ss_conf 289986998999999999869999999966999996499999999887998999998650478986
No 196
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.012 Score=36.52 Aligned_cols=59 Identities=20% Similarity=0.424 Sum_probs=38.0
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE----ECCCCHHHHHHHHHHHCCEEE
Q ss_conf 655102312220487787899999999998611886469999----508787899999984034278
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL----LIDERPEEVTDMQRSVQGEVI 231 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~----ligEr~~ev~e~~~~~~~~vv 231 (423)
..|-+|.-.+|+|++|+|||||++.|+. ... |+.=-|.+ +.+-.+.+..++.+.+ +.|+
T Consensus 21 l~i~~Ge~~~iiG~SGsGKSTll~~i~g-L~~--p~~G~I~~~g~~i~~~~~~~~~~~r~~i-g~vf 83 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVG-LLR--PDSGEVLIDGEDISGLSEAELYRLRRRM-GMLF 83 (235)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC-CCC--CCCCEEEECCEECCCCCHHHHHHHHCCE-EEEE
T ss_conf 4887998999999999729999999975-999--8985899999999989988999975782-9970
No 197
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.31 E-value=0.011 Score=36.68 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=26.2
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
..|.+|.-.+|+||+|+|||||++.|+--
T Consensus 22 l~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl 50 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 79869989999999984699999999759
No 198
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=95.31 E-value=0.13 Score=29.69 Aligned_cols=227 Identities=19% Similarity=0.246 Sum_probs=120.9
Q ss_pred HHCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHC-CCC---EEEECCCCCCHHHHHHHHHHHHHH--CCCCCE-E
Q ss_conf 0020001122--343247786532136888998865510-231---222048778789999999999861--188646-9
Q gi|254780810|r 137 DNLTPLYPDK--RFNMELNNPENKDISSRVIDLIAPIGK-GQR---SLIVAPPRTGKTILLQNIAHSIKK--NHPECY-L 207 (423)
Q Consensus 137 ~~l~p~~p~~--~i~le~~~~~p~~~~~~~id~~~pig~-gqr---~~i~~~~~~gkt~ll~~ia~~~~~--~~~~v~-~ 207 (423)
+-|.|-|-++ +|.-|- + -=-..--.+-|+-+ |++ +.|.|++|||||...+.+.+-+.. .+.++. +
T Consensus 6 ~~L~~dY~Pden~i~hRd---e---qI~~l~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~ 79 (383)
T TIGR02928 6 DLLEPDYVPDENRIVHRD---E---QIEELAKALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDV 79 (383)
T ss_pred CCCCCCCCCCCCCCCCCH---H---HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 237757702742466867---8---9999999988750674898725887888987889999999999998622699715
Q ss_pred EEEECCCC-----HHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHHHHHHHCCC
Q ss_conf 99950878-----789999998403427823667888899999999999999999-779928999816389877620013
Q gi|254780810|r 208 IVLLIDER-----PEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCLV-EYGLDVVILLDSITRLCRAYNVLM 281 (423)
Q Consensus 208 i~~ligEr-----~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~-e~G~dVll~~DslTR~ArA~~~~~ 281 (423)
.++-|.=. -+-+.++.+.+ ==+.+-.++|..=+-..+.--..-+++- +++.-|+|++|-|-+|-+--.. .
T Consensus 80 ~~~~~NC~~~~T~y~~~~~L~~~l---n~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv~~~~d-~ 155 (383)
T TIGR02928 80 STVYINCQILDTSYQVLVELANQL---NRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLVRKDDD-D 155 (383)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCC-C
T ss_conf 899977854684699999999985---157788889887787899999999998320188799986231022158888-8
Q ss_pred CCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEE----------------EEEEECCCCCCCCHHHHHHHHC----
Q ss_conf 66777677752024665046875225777777850012----------------1120126765541388988522----
Q gi|254780810|r 282 PSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTII----------------GTALVDTGSRMDEVIFEEFKGT---- 341 (423)
Q Consensus 282 ~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~----------------~t~lvetg~~~d~~i~~~~~~~---- 341 (423)
| .++..||...|.-. ...+++ ..+.+| -+.|.+..=-|+.+=+++++.|
T Consensus 156 P---------AyS~~LY~L~Ra~~-~~~~~~-~~vgvIgISND~~f~~~Ld~RVkSsL~~eei~FpPYdA~eL~~IL~~R 224 (383)
T TIGR02928 156 P---------AYSKLLYQLSRARE-NGDLEN-AKVGVIGISNDLKFRENLDPRVKSSLCEEEIVFPPYDAEELRDILENR 224 (383)
T ss_pred H---------HHHHHHHHHHHHHH-CCCCCC-CCEEEEEEECCCHHHHHCCCCEECCCCCCCCEECCCCHHHHHHHHHHH
T ss_conf 0---------78788534331000-357788-534899986571436445753013248740040798869999999720
Q ss_pred -----------CCCEEEEEHHHHHCCC---CCCCCCCCC----CCCCHHHCCCHHHHHHHH
Q ss_conf -----------6607898087884799---974053354----221015519999999999
Q gi|254780810|r 342 -----------GNSEIVLERKIADKRI---FPAMDIIKS----GTRKEDLLVERQDLQKVF 384 (423)
Q Consensus 342 -----------~d~~i~L~r~la~~~~---~PAId~~~S----~sR~~~~l~~~~~~~~~~ 384 (423)
.|+-|-|.-++|++-| +=|||+++- .-|.....+.++|.+.|.
T Consensus 225 ~v~~AF~dGvl~d~VI~lcAA~aAq~hGDAR~AiDLLR~AGe~A~~~g~~~Vt~~HV~~A~ 285 (383)
T TIGR02928 225 AVEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEEAQ 285 (383)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 3120336885462279999998620678789999999987687531576310088899999
No 199
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.31 E-value=0.013 Score=36.36 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=25.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
+.|-+|+..+|+|++|+|||||++.|+.
T Consensus 30 ~~i~~Ge~vaiiG~sGsGKSTLl~ll~G 57 (269)
T PRK13648 30 FNIPKGQWTSIVGHNGSGKSTIAKLMIG 57 (269)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 9985998999999999979999999964
No 200
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.025 Score=34.46 Aligned_cols=123 Identities=19% Similarity=0.226 Sum_probs=68.6
Q ss_pred CCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 88788512443000200011223432477865321368889988655102312220487787899999999998611886
Q gi|254780810|r 125 DVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPE 204 (423)
Q Consensus 125 ~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~ 204 (423)
.++..+..+-+.+++-.....+|+..- + ++-.+.+=-+|.=.+.+||||+|||.|.+.||+++...
T Consensus 312 ~Dl~~a~~iLd~dHYGLekVKeRIlEy--------L---AV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--- 377 (782)
T COG0466 312 LDLKKAEKILDKDHYGLEKVKERILEY--------L---AVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--- 377 (782)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHH--------H---HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC---
T ss_conf 229999987443556711689999999--------9---99986146788579997899887011899999995897---
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH
Q ss_conf 46999950878789999998403427823667888899999999999999999779928999816389877620
Q gi|254780810|r 205 CYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYN 278 (423)
Q Consensus 205 v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~ 278 (423)
++=+.|=|=|-| .|.+-.=++-|-+ -|..-++. +.. -.-+|=|+++|-|-+.+..||
T Consensus 378 -fvR~sLGGvrDE--AEIRGHRRTYIGa-----MPGrIiQ~----mkk-----a~~~NPv~LLDEIDKm~ss~r 434 (782)
T COG0466 378 -FVRISLGGVRDE--AEIRGHRRTYIGA-----MPGKIIQG----MKK-----AGVKNPVFLLDEIDKMGSSFR 434 (782)
T ss_pred -EEEEECCCCCCH--HHHCCCCCCCCCC-----CCHHHHHH----HHH-----HCCCCCEEEEECHHHCCCCCC
T ss_conf -799954765427--7753553123356-----87289999----998-----677687478640333167777
No 201
>PRK10744 phosphate transporter subunit; Provisional
Probab=95.29 E-value=0.013 Score=36.36 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=26.3
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
+.|.+|+..+|+|++|+|||||++.|+.-
T Consensus 31 l~i~~Ge~~~liG~nGaGKSTLlk~i~gl 59 (257)
T PRK10744 31 LDIAKNQVTAFIGPSGCGKSTLLRTFNKM 59 (257)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99889989999999998199999999876
No 202
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.29 E-value=0.01 Score=37.03 Aligned_cols=227 Identities=19% Similarity=0.220 Sum_probs=95.6
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEEC----CCCCCHHHH
Q ss_conf 8865510231222048778789999999999861188646999950878789999998403427823----667888899
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISS----TFDESAARH 242 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~s----t~d~~~~~~ 242 (423)
.-+.|.+|+..+|+|++|+|||||++.++.-+....-.+.+--.-|..++....+..+.+ +.|+-. -|..+....
T Consensus 26 isl~i~~GE~v~iiG~nGsGKSTLl~~l~GLl~p~~G~V~i~G~~i~~~~~~~~~~r~~i-G~VfQ~P~~~l~~~tV~e~ 104 (287)
T PRK13637 26 VNIEIEDGEFVALIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKV-GLVFQYPEYQLFEETIEKD 104 (287)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCHHHHHHCE-EEEEECCCCCCCCCCHHHH
T ss_conf 076987998999999999399999999973998887269999999878886778887417-8996175202370309999
Q ss_pred HHHH--------HHHHHHHHHHHH-CCCCEEEEEEC----H-----HHHHHHHHCCCCC----CCCCCCCCCCHHHHHHC
Q ss_conf 9999--------999999999997-79928999816----3-----8987762001366----77767775202466504
Q gi|254780810|r 243 VQVA--------EMVIAKAKCLVE-YGLDVVILLDS----I-----TRLCRAYNVLMPS----SGKILTGGVDANALQRP 300 (423)
Q Consensus 243 ~~~a--------~~a~~~a~~~~e-~G~dVll~~Ds----l-----TR~ArA~~~~~~~----~g~~~~gg~~~~~l~~~ 300 (423)
+... +-..++++...+ -|-+.--+.|. | -|.|-|--.+.-| .-| |+.+.||..-...
T Consensus 105 i~fg~~~~g~~~~e~~~rv~~~l~~vgL~~~~~~~~~p~~LSGGqkQRvaiA~aL~~~P~iLllDE-PTs~LDp~~~~~i 183 (287)
T PRK13637 105 IAFGPINLGLSEEEIENRVKEAMNIVGLDYEVYKDKSPFELSGGQKRRVAIAGVVAMEPKVLILDE-PTAGLDPKGRDDI 183 (287)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHH
T ss_conf 986898869999999999999997669984887068911299889999999999983999999838-8664899999999
Q ss_pred HHHHHCCCCCCCCCCCEEEEEEEECCCCCCCC--HHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHH
Q ss_conf 68752257777778500121120126765541--3889885226607898087884799974053354221015519999
Q gi|254780810|r 301 KRFFGAARNIKEGGSLTIIGTALVDTGSRMDE--VIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQ 378 (423)
Q Consensus 301 ~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~--~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~ 378 (423)
..++. ...+..+.|++ +-| -||++ .++|-+.-.-+|+|+.+-.-.+-=--| +.+. .-.|-.|.
T Consensus 184 ~~~l~---~L~~e~g~Tvi----~vT-Hdl~~v~~~aDRvivl~~G~Iv~~Gtp~evf~~~--~~l~-----~~~l~~P~ 248 (287)
T PRK13637 184 LEKIK---ALHKEYNMTII----LVS-HSMEDVAKIADRIIVMNKGRCELQGTPREVFKEV--DTLE-----SIGLAVPQ 248 (287)
T ss_pred HHHHH---HHHHHCCCEEE----EEC-CCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH--HHHH-----HCCCCCCH
T ss_conf 99999---99985098999----995-7999999969999999899999987889987698--8998-----76999991
Q ss_pred HHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHCCC
Q ss_conf 999999999996126-----93789999999840289
Q gi|254780810|r 379 DLQKVFMLRRIVSSM-----NSSDAIEFLIDKLKQTK 410 (423)
Q Consensus 379 ~~~~~~~~r~~l~~~-----~~~e~~~~l~~~~~~~~ 410 (423)
-.+.++.|++.=-.. ..-|+-+.|.+.+++.|
T Consensus 249 ~~~l~~~L~~~g~~~~~~~~t~~e~~~~l~~~l~~~~ 285 (287)
T PRK13637 249 VTYLVRKLRKKGFNIPDDIFTIEEAKEELLKYLRSAK 285 (287)
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999999997599999886689999999999997675
No 203
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.28 E-value=0.012 Score=36.43 Aligned_cols=203 Identities=17% Similarity=0.163 Sum_probs=91.3
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEE-EECCCCCCHHHHHHHH
Q ss_conf 865510231222048778789999999999861188646999950878789999998403427-8236678888999999
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEV-ISSTFDESAARHVQVA 246 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~v-v~st~d~~~~~~~~~a 246 (423)
-+.|-+||+..|+|++|+|||||++.|..-..-+.-.+ .+-..|+=.+++..=|..+++-.+ ...++|+. ++..+
T Consensus 57 sf~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~~p~~G~I-~~~g~i~~v~Q~~~lf~~TireNI~~g~~~~~~---~~~~~ 132 (282)
T cd03291 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI-KHSGRISFSSQFSWIMPGTIKENIIFGVSYDEY---RYKSV 132 (282)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEEEEECCCCCCCCCCHHHHHHCCCCCCHH---HHHHH
T ss_conf 89984999999999999819999999957872786589-999999986574422671099997516886889---99999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEE--EEEEE
Q ss_conf 9999999999977992899981638987762001366777677752024665046875225777777850012--11201
Q gi|254780810|r 247 EMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTII--GTALV 324 (423)
Q Consensus 247 ~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~--~t~lv 324 (423)
.-++. +.+.+.++...++......|..+|||--.. ..-||.+-....+-++ +|.=+
T Consensus 133 ~~~~~--------------l~~~i~~lp~g~~t~vge~G~~LSGGQkQR--------laiARALl~~p~IliLDEpTS~L 190 (282)
T cd03291 133 VKACQ--------------LEEDITKFPEKDNTVLGEGGITLSGGQRAR--------ISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred HHHHC--------------CHHHHHHCCCCCCCEECCCCCCCCHHHHHH--------HHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99851--------------499998463425523003677589999999--------99999984289989986877668
Q ss_pred CCCCCCCCHHHHHHH-HC--CCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 267655413889885-22--6607898087884799974053354221015519999999999999996126937899
Q gi|254780810|r 325 DTGSRMDEVIFEEFK-GT--GNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAI 399 (423)
Q Consensus 325 etg~~~d~~i~~~~~-~~--~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~ 399 (423)
|.. ...-|++... .. ...-|+-+-.|..-..+--|=++..|.-.+. =..++-+..-...+.++..|++++-+
T Consensus 191 D~~--tE~~I~~~~l~~~~~~kTvI~ItHrL~~i~~aDrIiVL~~G~Ive~-Gth~ELm~~~g~ya~~~~~~~~~~~~ 265 (282)
T cd03291 191 DVF--TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY-GTFSELQSLRPDFSSKLMGYDTFDQF 265 (282)
T ss_pred CHH--HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEE-CCHHHHHHCCCHHHHHHHCCCCCCHH
T ss_conf 987--8999999999998689989999378888986999999989889997-48899863497899998537640011
No 204
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.28 E-value=0.013 Score=36.33 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=27.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 655102312220487787899999999998611
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
..|.+|...+|+|++|+|||||+..+|- .++.
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~G-l~~p 59 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAG-LEKP 59 (252)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC
T ss_conf 9964897899984898988899999956-5678
No 205
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.27 E-value=0.013 Score=36.21 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=26.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
..|-+|+-..|+||+|+||||+++.|+.-.
T Consensus 21 l~i~~Ge~~~iiG~SGsGKSTll~~i~gL~ 50 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 788799899999999981999999997445
No 206
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.27 E-value=0.012 Score=36.64 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=26.6
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 865510231222048778789999999999
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
=+.|-+||+.+|+|++|+|||||++.|..-
T Consensus 21 sl~i~~Ge~v~ivG~sGsGKSTLl~ll~gl 50 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 899869999999999999899999997438
No 207
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.26 E-value=0.012 Score=36.60 Aligned_cols=15 Identities=20% Similarity=0.135 Sum_probs=5.5
Q ss_pred EECCCCHHHHHHHHH
Q ss_conf 950878789999998
Q gi|254780810|r 210 LLIDERPEEVTDMQR 224 (423)
Q Consensus 210 ~ligEr~~ev~e~~~ 224 (423)
++||.-|.-=+-+.+
T Consensus 349 alvG~NGsGKSTLlk 363 (632)
T PRK11147 349 ALIGPNGCGKTTLLK 363 (632)
T ss_pred EEECCCCCCHHHHHH
T ss_conf 998898842779999
No 208
>KOG0735 consensus
Probab=95.25 E-value=0.19 Score=28.63 Aligned_cols=60 Identities=18% Similarity=0.265 Sum_probs=41.9
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE----ECCCCHHHHHHHHHHH
Q ss_conf 988655102312220487787899999999998611886469999----5087878999999840
Q gi|254780810|r 166 DLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL----LIDERPEEVTDMQRSV 226 (423)
Q Consensus 166 d~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~----ligEr~~ev~e~~~~~ 226 (423)
+.+.|+-+-+-.+|-||+|+|||+|++.+++...++ -.+++.++ |-|++-+....+.+.+
T Consensus 423 ~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~-~~~hv~~v~Cs~l~~~~~e~iQk~l~~v 486 (952)
T KOG0735 423 QELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKD-LIAHVEIVSCSTLDGSSLEKIQKFLNNV 486 (952)
T ss_pred HHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEEEECHHCCCHHHHHHHHHHHHH
T ss_conf 304543346618986799877769999999875156-5069999752210420489999999999
No 209
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.24 E-value=0.014 Score=36.01 Aligned_cols=31 Identities=35% Similarity=0.455 Sum_probs=27.8
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8865510231222048778789999999999
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
.=..|.+|++.+|+|++|+|||||++-+.+.
T Consensus 369 is~~i~~Ge~vaIVG~SGsGKSTl~~LL~g~ 399 (588)
T PRK11174 369 LNFTLPAGQRVALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 4699749978999899986499999999872
No 210
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.013 Score=36.40 Aligned_cols=55 Identities=16% Similarity=0.399 Sum_probs=36.3
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE----ECCCCHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998611886469999----5087878999999840
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL----LIDERPEEVTDMQRSV 226 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~----ligEr~~ev~e~~~~~ 226 (423)
+.|-+|+-..|+||+|+|||||++.|+.-.. |+.=.|++ +-.-.+.+...+.+.+
T Consensus 22 l~i~~Ge~~~iiGpsGsGKSTLl~~i~gl~~---p~~G~I~~~g~~i~~~~~~~l~~~R~~i 80 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC---CCCEEEEECCEECCCCCHHHHHHHHCCC
T ss_conf 8999998999999998339999999974999---9855999999998989989999986491
No 211
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.24 E-value=0.036 Score=33.37 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf 136888998865-510231222048778789999999999861188646999950878789999
Q gi|254780810|r 159 DISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTD 221 (423)
Q Consensus 159 ~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e 221 (423)
.||...+|-++- +.+|+=..|.|+||+|||+++.++|.+...++. ..+.+.-.-.-++|+..
T Consensus 3 pTG~~~lD~~~gGl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g-~~Vl~~slEm~~~~~~~ 65 (186)
T pfam03796 3 PTGFTDLDQLTGGLQKGDLIIIAARPSMGKTAFALNIARNAALKQD-KPVLFFSLEMSAEQLAE 65 (186)
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHH
T ss_conf 8880778864269888817999967999879999999999999709-96687547552999999
No 212
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.23 E-value=0.12 Score=29.85 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=27.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 22204877878999999999986118864699995087
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE 214 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE 214 (423)
.+|-+|||+|||+|+..+++....... .+-++.+|-
T Consensus 2 iGitG~pGaGKStLi~~l~~~~~~~g~--~VaVlavDP 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGK--RVAVLAIDP 37 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCC--EEEEEEECC
T ss_conf 762589978789999999999997898--379999688
No 213
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.20 E-value=0.013 Score=36.31 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=24.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..|.+|+-..|+||+|+|||||+.+|+-
T Consensus 38 l~I~~GE~~~llGpSGsGKSTLlr~iaG 65 (378)
T PRK09452 38 LTINNGEFLTLLGPSGCGKTTVLRLIAG 65 (378)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7999998999998999769999999976
No 214
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.20 E-value=0.013 Score=36.36 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=27.1
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8655102312220487787899999999998
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
-+.|-+|+..+|+|++|+|||||++.|+.-.
T Consensus 25 sl~i~~Ge~~~IvG~sGsGKSTLl~~i~G~~ 55 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 8997699899999999985899999981895
No 215
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.19 E-value=0.012 Score=36.45 Aligned_cols=51 Identities=31% Similarity=0.427 Sum_probs=39.4
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 24430002000112234324778653213688899886551023122204877878999999999
Q gi|254780810|r 132 NKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 132 ~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
....|++++...|+-+..++ + +-.-+..|.+.+|.|++|+|||+|+.-||-
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~-----~---------l~~~v~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLS-----E---------LNFEVRPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred CEEEEEEEEEECCCCCEEEC-----C---------CEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 50588543677799874214-----6---------526547998799878999878899999964
No 216
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.19 E-value=0.014 Score=36.14 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=26.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
+.|-+|++.+|+|++|+|||||++.|..-.
T Consensus 23 l~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~ 52 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 998599899999999983999999997677
No 217
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.18 E-value=0.013 Score=36.32 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=27.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 6551023122204877878999999999986
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
..|-+|++.+|+|++|+|||||++-+.+-..
T Consensus 363 l~I~~G~~vaiVG~SGsGKSTL~~LL~gly~ 393 (581)
T PRK11176 363 FKIPAGKTVALVGRSGSGKSTIANLLTRFYD 393 (581)
T ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 3579994431228999867899999985366
No 218
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.16 E-value=0.015 Score=35.89 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=27.1
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8655102312220487787899999999998
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
=+.|.+|+..+|+||+|+|||||++.|+.-.
T Consensus 27 s~~i~~Ge~~~i~G~sGsGKSTLlk~i~gl~ 57 (225)
T PRK10247 27 NFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7998599699999999999999999996466
No 219
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.16 E-value=0.012 Score=36.48 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=28.8
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 9886551023122204877878999999999986
Q gi|254780810|r 166 DLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 166 d~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
|.-+.|-+|++.+|+|++|+|||||++.+..-..
T Consensus 22 ~isf~I~~Ge~vaIvG~sGsGKSTLl~lL~gl~~ 55 (275)
T cd03289 22 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 5079987999999999999979999999960357
No 220
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.14 E-value=0.014 Score=36.16 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=35.8
Q ss_pred HHHHHHCCCCEEEEEECHHH-HHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHC
Q ss_conf 99999779928999816389-8776200136677767775202466504687522
Q gi|254780810|r 253 AKCLVEYGLDVVILLDSITR-LCRAYNVLMPSSGKILTGGVDANALQRPKRFFGA 306 (423)
Q Consensus 253 a~~~~e~G~dVll~~DslTR-~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ 306 (423)
.+-..+.|.-++++--++.- ++.|-|.+....|+...-|-|--.+..|+..|-|
T Consensus 180 ~~L~~e~g~T~i~VTHD~~eA~~laDrI~Vm~~G~I~q~GtP~evy~~P~~~~vA 234 (352)
T PRK10851 180 RQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVL 234 (352)
T ss_pred HHHHHHHCCEEEEECCCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCHHHH
T ss_conf 9999973998999988999999869899999899999993889998789983898
No 221
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.13 E-value=0.26 Score=27.75 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=56.6
Q ss_pred HHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHH
Q ss_conf 8899886551023-122204877878999999999986118864699995087878999999840342782366788889
Q gi|254780810|r 163 RVIDLIAPIGKGQ-RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAAR 241 (423)
Q Consensus 163 ~~id~~~pig~gq-r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~ 241 (423)
-+.++..-|+.|| +..+.|..|+|||++.+-+..+.+ .+-+++ +.|+-.-=-...+.+-+ ++.-.. +|..
T Consensus 39 ~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~---~d~~~~-v~i~~~~~s~~~~~~ai----~~~l~~-~p~~ 109 (269)
T COG3267 39 ALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLN---EDQVAV-VVIDKPTLSDATLLEAI----VADLES-QPKV 109 (269)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC---CCCEEE-EEECCCCHHHHHHHHHH----HHHHCC-CCCC
T ss_conf 99997777751785599974477763699999998557---885179-98357630178899999----998405-8320
Q ss_pred HHHH-HHHHHHHHHHHHHCCCC-EEEEEECHHHHH
Q ss_conf 9999-99999999999977992-899981638987
Q gi|254780810|r 242 HVQV-AEMVIAKAKCLVEYGLD-VVILLDSITRLC 274 (423)
Q Consensus 242 ~~~~-a~~a~~~a~~~~e~G~d-Vll~~DslTR~A 274 (423)
++.+ ++..-..=--+.-+|+. |++++|..--+.
T Consensus 110 ~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~ 144 (269)
T COG3267 110 NVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLN 144 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHC
T ss_conf 06889999999999999817887378501676617
No 222
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.13 E-value=0.014 Score=36.09 Aligned_cols=28 Identities=32% Similarity=0.435 Sum_probs=25.8
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..+-+|+-.+|+||+|+|||||++.|+.
T Consensus 28 ~~i~~Ge~~~ilGpnGsGKSTLl~~i~G 55 (226)
T cd03234 28 LHVESGQVMAILGSSGSGKTTLLDAISG 55 (226)
T ss_pred EEEECCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8991880999998999609999999967
No 223
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.13 E-value=0.015 Score=35.96 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=36.2
Q ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 44300020001122343247786532136888998865510231222048778789999999999
Q gi|254780810|r 133 KIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 133 ~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
...+++++-.|+...-..+ .+.++-|+ +.|.+|+..+|+|++|+|||||++.++.-
T Consensus 5 ~I~~~nls~~Y~~~~~~~~-------~~al~~Is--l~i~~GE~v~iiG~nGsGKSTL~r~l~gl 60 (281)
T PRK13633 5 MIKCKNVVFKYESNEESTE-------KIALDDVN--LEVKKGEFLVILGHNGSGKSTIAKHMNAL 60 (281)
T ss_pred CEEEEEEEEEECCCCCCCC-------CCEEECEE--EEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 7899717999499997767-------72673407--68879989999999998499999999758
No 224
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.12 E-value=0.016 Score=35.78 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=26.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
+.+-+|+..+|+||.|+|||||++.|+.-.
T Consensus 21 l~i~~Gei~~iiG~nGaGKSTLl~~i~Gl~ 50 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 888699899998899998999999995685
No 225
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.12 E-value=0.0058 Score=38.60 Aligned_cols=220 Identities=18% Similarity=0.270 Sum_probs=96.5
Q ss_pred CCCEEECCCCCCCHHHHHCCC--CHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf 300022225568878851244--300020001122343247786532136888998865510231222048778789999
Q gi|254780810|r 114 FALLKVNAINFDVPERVRNKI--HFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILL 191 (423)
Q Consensus 114 ~~L~rV~~vnG~~~d~~~~~~--~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll 191 (423)
..+.|+.++.-.|+|...... +-..+.-..--+.+..+....+|. -.. |.=..|--|++.+|+|.+|+|||||+
T Consensus 441 ~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~--vL~--~isL~I~~Ge~vaIvG~SGsGKSTL~ 516 (709)
T COG2274 441 VALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPP--VLE--DLSLEIPPGEKVAIVGRSGSGKSTLL 516 (709)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCC--HHH--CEEEEECCCCEEEEECCCCCCHHHHH
T ss_conf 99999999963986445666555566657628998789981799844--121--50277679988999879999889999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHH---HHHHHHHHC--------------CEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999861188646999950878789---999998403--------------427823667888899999999999999
Q gi|254780810|r 192 QNIAHSIKKNHPECYLIVLLIDERPEE---VTDMQRSVQ--------------GEVISSTFDESAARHVQVAEMVIAKAK 254 (423)
Q Consensus 192 ~~ia~~~~~~~~~v~~i~~ligEr~~e---v~e~~~~~~--------------~~vv~st~d~~~~~~~~~a~~a~~~a~ 254 (423)
+.+..- ..|..=. .++|...-. ...+++.+- --.--...+.+-+.-+.++.+|-.
T Consensus 517 KLL~gl---y~p~~G~--I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~--- 588 (709)
T COG2274 517 KLLLGL---YKPQQGR--ILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGA--- 588 (709)
T ss_pred HHHHCC---CCCCCCE--EEECCEEHHHCCHHHHHHHEEEECCCCHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHCC---
T ss_conf 998367---8888855--99998727866999998654687466532047398797468999997999999998376---
Q ss_pred HHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEE--EEEEECCCCCCCC
Q ss_conf 99977992899981638987762001366777677752024665046875225777777850012--1120126765541
Q gi|254780810|r 255 CLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTII--GTALVDTGSRMDE 332 (423)
Q Consensus 255 ~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~--~t~lvetg~~~d~ 332 (423)
-|.+.++-+-|...-.-.|-.+|||=-.. ... ||..-..-.+-++ +|.=.|. .-..
T Consensus 589 ------------~~fI~~lP~gy~t~v~E~G~~LSGGQrQr------lal--ARaLl~~P~ILlLDEaTSaLD~--~sE~ 646 (709)
T COG2274 589 ------------HEFIENLPMGYDTPVGEGGANLSGGQRQR------LAL--ARALLSKPKILLLDEATSALDP--ETEA 646 (709)
T ss_pred ------------HHHHHHCCCCCCCCCCCCCCCCCHHHHHH------HHH--HHHHCCCCCEEEEECCCCCCCH--HHHH
T ss_conf ------------89998360545623204898888889999------999--9985469998997074223698--6799
Q ss_pred HHHHHHHHCC--CCEEEEEHHHHHCCCCCCCCCCCCC
Q ss_conf 3889885226--6078980878847999740533542
Q gi|254780810|r 333 VIFEEFKGTG--NSEIVLERKIADKRIFPAMDIIKSG 367 (423)
Q Consensus 333 ~i~~~~~~~~--d~~i~L~r~la~~~~~PAId~~~S~ 367 (423)
-|.++..-.. ..-|+..-.+.--+..-=|=++..|
T Consensus 647 ~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~G 683 (709)
T COG2274 647 IILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQG 683 (709)
T ss_pred HHHHHHHHHHCCCEEEEEECCCHHHHHCCEEEECCCC
T ss_conf 9999999984588699997661686402579981699
No 226
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.12 E-value=0.013 Score=36.37 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=55.3
Q ss_pred EECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 22225568878851244300020001122343247786532136888998865510231222048778789999999999
Q gi|254780810|r 118 KVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 118 rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
.+-.+.|..|+.+-+....- .....+..+++ .++-+-|.=+.|.+|.-..|+|++|+|||||+.+|+.-
T Consensus 9 ~l~kvfg~~~~~a~~~~~~g-----~~k~ei~~~tg------~~vAv~dVsl~I~~GEi~~ivG~SGsGKSTLlr~i~gL 77 (400)
T PRK10070 9 NLYKIFGEHPQRAFKYIEQG-----LSKEQILEKTG------LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred EEEEECCCCHHHHHHHHHCC-----CCHHHHHHHHC------CEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 47993298989999998769-----99899998649------99989740768879999999999984699999999759
Q ss_pred HHHCCCCCEEEEE-ECCCCHHHHHHHHHHHCCEEEEC
Q ss_conf 8611886469999-50878789999998403427823
Q gi|254780810|r 198 IKKNHPECYLIVL-LIDERPEEVTDMQRSVQGEVISS 233 (423)
Q Consensus 198 ~~~~~~~v~~i~~-ligEr~~ev~e~~~~~~~~vv~s 233 (423)
+.-..-.+.+--. +..-.+.+..++.+.--+.|+-.
T Consensus 78 ~~Pt~G~I~i~G~di~~~~~~~l~~~rrr~igmVFQ~ 114 (400)
T PRK10070 78 IEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQS 114 (400)
T ss_pred CCCCCCEEEECCEECCCCCHHHHHHHHCCCEEEEECC
T ss_conf 9989818999999999899789876514655999579
No 227
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.11 E-value=0.016 Score=35.73 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=26.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
+.|..|+..+|+||.|+|||||++.|+--+
T Consensus 32 f~v~~Ge~~~l~GpNGaGKTTLlr~l~Gl~ 61 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 898189899999999987999999997697
No 228
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.11 E-value=0.014 Score=36.05 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=26.0
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 86551023122204877878999999999
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
=+.+-+|.-..|+||+|+|||||+..|+-
T Consensus 22 s~~v~~Ge~~~iiGpSGsGKSTll~~i~G 50 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 86988998999999999779999999976
No 229
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.11 E-value=0.011 Score=36.67 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=31.5
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf 5510231222048778789999999999861188646999950878789
Q gi|254780810|r 170 PIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEE 218 (423)
Q Consensus 170 pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~e 218 (423)
.|-+|...+|+||.|+|||||++.|+.-+.-+.-++..-.--|+..|++
T Consensus 21 ti~~GEiv~liGpNGaGKSTLlk~l~Gll~p~~G~I~~~g~~i~~~pq~ 69 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY 69 (246)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH
T ss_conf 4657989999979997699999999778788860799898205768743
No 230
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.11 E-value=0.22 Score=28.26 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=50.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCC----------CEEEEEECCCCHHH-HHHHHHHH---------CCEEE-E
Q ss_conf 2312220487787899999999998611886----------46999950878789-99999840---------34278-2
Q gi|254780810|r 174 GQRSLIVAPPRTGKTILLQNIAHSIKKNHPE----------CYLIVLLIDERPEE-VTDMQRSV---------QGEVI-S 232 (423)
Q Consensus 174 gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~----------v~~i~~ligEr~~e-v~e~~~~~---------~~~vv-~ 232 (423)
|.=+.|+||+|+|||.|+.++|-++..-.+- ..++| +.+|=+++ +..-.+.. ..-++ .
T Consensus 1 G~v~~l~g~gG~GKS~lal~lAl~vA~G~~~~g~~~~~~~~G~Vly-~~~Ed~~~~l~rRl~a~~~~~~~~~~~~rl~~~ 79 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVY-LSAEDPREEIHRRLEAILQHLEPDDAGDRLFID 79 (239)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE-EECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf 9389998089988899999999999759965689854687761999-978899899999999999863866555416641
Q ss_pred CCCCCCHHHH----HHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 3667888899----99999999999999977992899981638987
Q gi|254780810|r 233 STFDESAARH----VQVAEMVIAKAKCLVEYGLDVVILLDSITRLC 274 (423)
Q Consensus 233 st~d~~~~~~----~~~a~~a~~~a~~~~e~G~dVll~~DslTR~A 274 (423)
+-.++|...- .......-.+.+... ..+=.|+++|.+.|+.
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~i~~~~~-~~~~~LVViDpL~~~~ 124 (239)
T cd01125 80 SGRIQPISIAREGRIIVVPEFERIIEQLL-IRRIDLVVIDPLVSFH 124 (239)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCEEEECCCHHHC
T ss_conf 55666441335772101489999999974-5899899983817748
No 231
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.10 E-value=0.015 Score=35.82 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=27.4
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 6551023122204877878999999999986
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
..|-+|+...|+|++|+|||||++.++.-..
T Consensus 23 l~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~ 53 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 9985999999999999809999999966666
No 232
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.09 E-value=0.001 Score=43.50 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=57.5
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC---CHHHHHHHHHHH---C--CEEEECC----
Q ss_conf 886551023122204877878999999999986118864699995087---878999999840---3--4278236----
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE---RPEEVTDMQRSV---Q--GEVISST---- 234 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE---r~~ev~e~~~~~---~--~~vv~st---- 234 (423)
.-..|-+|++..|+|++|+|||||++.++.-..-.. =. + ++|- +-=...++.+.+ . ...+..|
T Consensus 484 vsl~i~~Ge~vaIvG~sGsGKSTL~kll~Gl~~p~~---G~-i-~idg~~~~~~~~~~~r~~i~~v~Q~~~lf~gTi~eN 558 (694)
T TIGR03375 484 VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GS-V-LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN 558 (694)
T ss_pred HHHEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCC---CE-E-EECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHH
T ss_conf 311887997899980589878899998556758998---87-9-989854254999999730213576771107469999
Q ss_pred ---CCCC-HHHHHH-HHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf ---6788-889999-99999999999997799289998163898776200136677767775202
Q gi|254780810|r 235 ---FDES-AARHVQ-VAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDA 294 (423)
Q Consensus 235 ---~d~~-~~~~~~-~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~ 294 (423)
++.. ...++. ++.. .-+.|.+.++.+.|...-...|..+|||--.
T Consensus 559 i~~~~~~~~~~~i~~a~~~---------------a~l~~~I~~lp~g~~t~i~e~G~~LSgGqrQ 608 (694)
T TIGR03375 559 IALGAPYADDEEILRAAEL---------------AGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred HHCCCCCCCHHHHHHHHHH---------------HCCHHHHHHCCCCCCCEECCCCCCCCHHHHH
T ss_conf 8416999999999999998---------------1979999718566787746899946899999
No 233
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.015 Score=35.81 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=26.5
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
+.|.+|+..+|+|++|+|||||++.+..-.
T Consensus 23 l~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 23 LDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 998799999999899982999999996676
No 234
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.08 E-value=0.025 Score=34.45 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=27.3
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999861
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
+.|-+|+..+|+|++|+|||||++.|+.-...
T Consensus 22 l~i~~Ge~~~IvG~sGsGKSTLl~~l~g~~~~ 53 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT 53 (218)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 99869999999999998099999998555656
No 235
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.08 E-value=0.015 Score=35.96 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=23.2
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..|-+|+-..|+||+|+|||||+++|+-
T Consensus 24 l~i~~Ge~~~llGpsG~GKSTllr~i~G 51 (369)
T PRK11000 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8987998999999997369999999977
No 236
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.07 E-value=0.016 Score=35.75 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=27.0
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
..|.+|...+|+||.|+|||||++.|+.-+
T Consensus 25 l~i~~GE~~~iiGpNGaGKSTLlk~i~Gll 54 (262)
T PRK09984 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 898799899999899960999999997567
No 237
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=95.06 E-value=0.016 Score=35.65 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=28.4
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 8865510231222048778789999999999861
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
.=+.+.+|+-.+|+|++|+|||||++.|+--...
T Consensus 25 Vs~~v~~GEi~~iiG~nGaGKSTLl~~i~G~~~p 58 (258)
T PRK11701 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 2778879979999888998899999998567888
No 238
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.06 E-value=0.014 Score=36.00 Aligned_cols=60 Identities=20% Similarity=0.495 Sum_probs=42.9
Q ss_pred CHHHHHCCCCHHHCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 878851244300020001122--34324778653213688899886551023122204877878999999999986
Q gi|254780810|r 126 VPERVRNKIHFDNLTPLYPDK--RFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 126 ~~d~~~~~~~f~~l~p~~p~~--~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
.|+.......|++..--||.. ...++ |.-+.|-+|++..|+|++|+|||||++.|..-..
T Consensus 4 ~p~~~~G~I~f~nVsf~Y~~~~~~~vL~--------------~is~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 4 APDHLKGIVKFQNVTFAYPTRPDTLVLQ--------------DVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CCCCCEEEEEEEEEEEECCCCCCCEEEE--------------CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6434555999998899889999994374--------------5389982999999999999849999999964546
No 239
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=95.05 E-value=0.017 Score=35.56 Aligned_cols=129 Identities=17% Similarity=0.254 Sum_probs=70.9
Q ss_pred HHHCCCCHHHCCCCC-CCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 851244300020001-1223-43247786532136888998865510231222048778789999999999861188646
Q gi|254780810|r 129 RVRNKIHFDNLTPLY-PDKR-FNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECY 206 (423)
Q Consensus 129 ~~~~~~~f~~l~p~~-p~~~-i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~ 206 (423)
|..+...|++++..| |..+ ..+ .+.+ +.|-=|++..|+|+||+|||||++.+..-..-. ..
T Consensus 345 G~~P~l~~~~v~~~y~~G~~~pa~-----~~~s---------f~~~pG~~vAl~G~SGaGKSTLL~lLLGf~~P~-~G-- 407 (570)
T TIGR02857 345 GADPSLEFEGVSVAYAPGRDEPAL-----RPVS---------FTVEPGERVALVGPSGAGKSTLLNLLLGFVEPT-EG-- 407 (570)
T ss_pred CCCCEEEEEEEEEECCCCCHHHCC-----CCCC---------EEECCCCEEEEEECCCCCHHHHHHHHHCCCCCC-CC--
T ss_conf 998407887516862788801037-----8854---------166387048886279997889999997157644-64--
Q ss_pred EEEEEC----CCCHHHHHHHHHH-HC-------------------CEEEECCCCCCHHHHHHHHHHHH-HHHHHHHHCCC
Q ss_conf 999950----8787899999984-03-------------------42782366788889999999999-99999997799
Q gi|254780810|r 207 LIVLLI----DERPEEVTDMQRS-VQ-------------------GEVISSTFDESAARHVQVAEMVI-AKAKCLVEYGL 261 (423)
Q Consensus 207 ~i~~li----gEr~~ev~e~~~~-~~-------------------~~vv~st~d~~~~~~~~~a~~a~-~~a~~~~e~G~ 261 (423)
. +.| |.-+++.+++.+. .- ..+--+..|.++.+=.++++.|- ...-.-..+|-
T Consensus 408 ~--i~v~~~Gg~~G~~L~~~~~~W~W~~~iaWv~Q~P~l~~gtiaeNi~La~~~A~~~~~~~A~~~agl~~~~~~LP~Gl 485 (570)
T TIGR02857 408 A--IVVERDGGINGVPLAEADADWSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGL 485 (570)
T ss_pred E--EEEECCCCCCCCCCCCCCHHHHHHHCEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6--88744888539764211310225541343056660136479999973489999899999999972899999711131
Q ss_pred CEEEEEECHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 2899981638987762001366777677752
Q gi|254780810|r 262 DVVILLDSITRLCRAYNVLMPSSGKILTGGV 292 (423)
Q Consensus 262 dVll~~DslTR~ArA~~~~~~~~g~~~~gg~ 292 (423)
| ..-...|+-+|||=
T Consensus 486 ~----------------t~~Ge~G~GLSGGq 500 (570)
T TIGR02857 486 D----------------TPIGEGGAGLSGGQ 500 (570)
T ss_pred C----------------CCCCCCCCCCCHHH
T ss_conf 3----------------43588888477999
No 240
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.03 E-value=0.016 Score=35.68 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 886551023122204877878999999999986
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
.=+.|-+|+..+|+|+.|+|||||++.|+--+.
T Consensus 43 Vsf~i~~GEivgllG~NGaGKSTLlk~I~Gl~~ 75 (264)
T PRK13546 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 078885998999998998619999999967988
No 241
>PRK10416 cell division protein FtsY; Provisional
Probab=95.02 E-value=0.28 Score=27.55 Aligned_cols=125 Identities=22% Similarity=0.245 Sum_probs=67.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH---HHHHCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 12220487787899999999998611886469999508787899999---984034278236678888999999999999
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDM---QRSVQGEVISSTFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~---~~~~~~~vv~st~d~~~~~~~~~a~~a~~~ 252 (423)
-.+++|--|+||||.+..+|+...+++..|.++. .=--|+--+-.. .+.+...|+.......|. .+++-++..
T Consensus 297 VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA-~DTfRaAAieQL~~w~~r~~v~vi~~~~g~Dpa---~V~~dai~~ 372 (499)
T PRK10416 297 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA-GDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA---SVIFDAIQA 372 (499)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE-ECCCCHHHHHHHHHHHCCCCCEEEECCCCCCHH---HHHHHHHHH
T ss_conf 9999747878789899999999997799537884-066756899999998424573698368999979---999999999
Q ss_pred HHHHHHCCCCEEEE------------EECHHHHHHHHHCCCC--CCCCCC--CCCCCHHHHHHCHHHHHCC
Q ss_conf 99999779928999------------8163898776200136--677767--7752024665046875225
Q gi|254780810|r 253 AKCLVEYGLDVVIL------------LDSITRLCRAYNVLMP--SSGKIL--TGGVDANALQRPKRFFGAA 307 (423)
Q Consensus 253 a~~~~e~G~dVll~------------~DslTR~ArA~~~~~~--~~g~~~--~gg~~~~~l~~~~~~~~~a 307 (423)
|+ ..|.||||+ |+.|....|..+-..+ |.--.+ -+..-.+++.-.+.|-.+.
T Consensus 373 a~---~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa~tGQna~~qak~F~e~~ 440 (499)
T PRK10416 373 AK---ARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV 440 (499)
T ss_pred HH---HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 99---729998998577643260999999999999997237899974899977876778999999984427
No 242
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.02 E-value=0.017 Score=35.48 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=26.5
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
+.|.+|+..+|+||.|+|||||++.|+.-+
T Consensus 25 ~~i~~Gei~~LiGpNGaGKSTLlk~I~Gl~ 54 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 898799799999899988999999996688
No 243
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.02 E-value=0.016 Score=35.70 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=28.1
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 886551023122204877878999999999986
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
.-+.|.+|+..+|+|++|+|||||++.++.-..
T Consensus 26 isl~i~~GE~vaivG~nGsGKSTL~k~l~Gl~~ 58 (279)
T PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 076887998999999999659999999972888
No 244
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.00 E-value=0.017 Score=35.49 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=25.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
+.|.+|...+|+||+|+|||||++.|+.
T Consensus 22 l~i~~Ge~~aliG~sGsGKSTLl~~l~g 49 (248)
T PRK11264 22 LEVKPGEVVAIIGPSGSGKTTLLRCINL 49 (248)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 7987998999999999809999999975
No 245
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=94.99 E-value=0.04 Score=33.07 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=32.9
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 88655102312220487787899999999998611886469999
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL 210 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ 210 (423)
..-=|.+||-.+++|++|+|||-|+.-|++....+.. .+.+.
T Consensus 40 ~~~~i~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~--~v~f~ 81 (178)
T pfam01695 40 GLDWIEQAENLLLLGPPGVGKTHLACALGHQACRAGY--SVLFT 81 (178)
T ss_pred CCCCHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC--EEEEE
T ss_conf 5974215876899899998789999999999998698--59999
No 246
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=94.98 E-value=0.012 Score=36.62 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=45.8
Q ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECC
Q ss_conf 3000200011223432477865321368889988655102312220487787899999999998611886469999-508
Q gi|254780810|r 135 HFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LID 213 (423)
Q Consensus 135 ~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-lig 213 (423)
.|++.+-.||...-.|. |.=..|-+||=.=+.|+||+||||||++|...-.-.-=.|.+.-- +-.
T Consensus 3 ~f~~V~~~Y~~~~~aL~--------------~v~l~i~kG~F~FLtG~SGAGKttLLKLl~~~~~P~~G~v~~~G~~~~~ 68 (215)
T TIGR02673 3 EFHNVSKSYPGGVEALH--------------DVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRVAGEDVSR 68 (215)
T ss_pred EEEEECEECCCCCHHHC--------------CCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEECCC
T ss_conf 66642100789851132--------------7644752774078872778617899999985269875808888740466
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 7878999999840
Q gi|254780810|r 214 ERPEEVTDMQRSV 226 (423)
Q Consensus 214 Er~~ev~e~~~~~ 226 (423)
=+.+++--++|.+
T Consensus 69 l~~~~~P~LRR~i 81 (215)
T TIGR02673 69 LRGRQLPLLRRRI 81 (215)
T ss_pred CCCCCCHHHHCCC
T ss_conf 7756431221315
No 247
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=94.98 E-value=0.012 Score=36.51 Aligned_cols=151 Identities=22% Similarity=0.261 Sum_probs=79.6
Q ss_pred CCEEECCCCCCCHHHHH--CCC--CHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf 00022225568878851--244--30002000112234324778653213688899886551023122204877878999
Q gi|254780810|r 115 ALLKVNAINFDVPERVR--NKI--HFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTIL 190 (423)
Q Consensus 115 ~L~rV~~vnG~~~d~~~--~~~--~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~l 190 (423)
++.|+=||+..|-|-.. ... +.-+-.+.+.+-+++.+.. .| -=.=|+-.-|--|+=.||+||||+|||||
T Consensus 434 a~~RlGDiLn~P~E~~~d~g~aalP~l~G~i~F~nirFRY~pD--~P----eVL~nl~L~I~~Ge~IGIvGpSGSGKSTL 507 (703)
T TIGR01846 434 AIERLGDILNSPTEPSSDAGLAALPELKGSITFENIRFRYKPD--SP----EVLSNLSLDIKPGEVIGIVGPSGSGKSTL 507 (703)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC--CC----HHHHCCCCCCCCCEEEEEECCCCCCHHHH
T ss_conf 6531210058684889998730354225726787533146888--71----78732687657865799872789867899
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHH-----------------HHHHHCCEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999861188646999950878789999-----------------99840342782366788889999999999999
Q gi|254780810|r 191 LQNIAHSIKKNHPECYLIVLLIDERPEEVTD-----------------MQRSVQGEVISSTFDESAARHVQVAEMVIAKA 253 (423)
Q Consensus 191 l~~ia~~~~~~~~~v~~i~~ligEr~~ev~e-----------------~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a 253 (423)
-+-+=| -+-|+-=- +|||+-==-.+| |.++++-.+-.+.=..|-++=+.+|.+|=+.
T Consensus 508 TKL~QR---LYtP~~Gq--VLVDG~DLA~~DP~wLRRQ~gVVLQEn~LFsrSirdNI~l~~P~~~~E~Vi~AA~LAGA~- 581 (703)
T TIGR01846 508 TKLLQR---LYTPEHGQ--VLVDGVDLAIADPAWLRRQVGVVLQENVLFSRSIRDNIALCNPGASVEHVIAAAKLAGAH- 581 (703)
T ss_pred HHHHHH---HCCCCCCE--EEECCCCCCCCCCCHHHHCCEEEEECCHHHCCCHHHHHHHCCCCCCHHHHHHHHHHCCHH-
T ss_conf 999886---14888874--777030001018520102230234000210122788985177776989999998621858-
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99997799289998163898776200136677767775
Q gi|254780810|r 254 KCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGG 291 (423)
Q Consensus 254 ~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg 291 (423)
|=|.++-+-|+....=-|-.+|||
T Consensus 582 --------------dFI~~Lp~GY~T~vgE~G~~LSGG 605 (703)
T TIGR01846 582 --------------DFISELPQGYNTEVGEKGANLSGG 605 (703)
T ss_pred --------------HHHHHCCCCCCCCCEEECCCCCCH
T ss_conf --------------999736376774001241566733
No 248
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.96 E-value=0.097 Score=30.58 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 1368889988655102312220487787899999999998611886469999
Q gi|254780810|r 159 DISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL 210 (423)
Q Consensus 159 ~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ 210 (423)
..-..++....+---++-..|+||+|+|||.|++-+++....+++ .++|+
T Consensus 23 ~~~~~~l~~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~--~~~yl 72 (226)
T TIGR03420 23 AELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGK--SAIYL 72 (226)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC--CEEEE
T ss_conf 999999998764668886999899999889999999999862699--57995
No 249
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=94.96 E-value=0.015 Score=35.87 Aligned_cols=183 Identities=20% Similarity=0.303 Sum_probs=91.1
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH--CCCC------CEE
Q ss_conf 00020001122343247786532136888998865510231222048778789999999999861--1886------469
Q gi|254780810|r 136 FDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKK--NHPE------CYL 207 (423)
Q Consensus 136 f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~--~~~~------v~~ 207 (423)
+++|.-.||+-. .+.+-|+ +-|.+|-=..|+||||+||||||..|-+=..- -..- -+.
T Consensus 4 V~~L~K~Y~~g~------------~~LK~in--l~i~~GE~~~~IG~SGAGKSTLLR~iNrL~~Gdk~~~Geilidf~i~ 69 (253)
T TIGR02315 4 VENLSKVYPNGK------------QALKNIN--LEINPGEFVAVIGPSGAGKSTLLRCINRLVEGDKPSSGEILIDFSIL 69 (253)
T ss_pred EEECEEEECCCC------------EEEEEEC--CEEECCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEE
T ss_conf 830487717983------------7885311--43416517999737887267999877530268888765089888888
Q ss_pred EEE--ECCCC-HHHHHHHHHHH-----------C-C-------------EEEECCCCCCH----------HHHHHHHHHH
Q ss_conf 999--50878-78999999840-----------3-4-------------27823667888----------8999999999
Q gi|254780810|r 208 IVL--LIDER-PEEVTDMQRSV-----------Q-G-------------EVISSTFDESA----------ARHVQVAEMV 249 (423)
Q Consensus 208 i~~--ligEr-~~ev~e~~~~~-----------~-~-------------~vv~st~d~~~----------~~~~~~a~~a 249 (423)
+-. +-..| +.+.+.+++.. + + ..+-+-|..=+ ..++-.+++|
T Consensus 70 ~~g~~i~~~~~~k~LR~~R~~igMIFQ~yNLi~R~~VL~NVL~GRLg~~~~~~~~~~~F~~~dk~~Al~~L~rVGl~~~A 149 (253)
T TIGR02315 70 LEGTDITKLRRGKKLRKLRRKIGMIFQHYNLIERLTVLENVLHGRLGYKSTWRSLLGRFSEEDKERALSLLERVGLADKA 149 (253)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHCCEEHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 72731876754889999976435011010237830366764214321450345563258998999999876523878898
Q ss_pred HHHHHHHHH-CCCCEEEEEECHHHHHHHHHC--CCCCCCCCCCCCCCHH----HHHHCHHHHHCCCCCCCCCCCEEEEEE
Q ss_conf 999999997-799289998163898776200--1366777677752024----665046875225777777850012112
Q gi|254780810|r 250 IAKAKCLVE-YGLDVVILLDSITRLCRAYNV--LMPSSGKILTGGVDAN----ALQRPKRFFGAARNIKEGGSLTIIGTA 322 (423)
Q Consensus 250 ~~~a~~~~e-~G~dVll~~DslTR~ArA~~~--~~~~~g~~~~gg~~~~----~l~~~~~~~~~ar~~~~~Gs~T~~~t~ 322 (423)
..+|..+-= |-+-|= -|||.-- .--=.-||. ...||. ++...|++ ++ .-+||++..-
T Consensus 150 ~~RaD~LSGGQQQRVa--------IARAL~Q~P~lILADEPi-ASLDP~~s~~VMd~lk~I------n~-e~GIT~i~NL 213 (253)
T TIGR02315 150 YQRADQLSGGQQQRVA--------IARALAQQPKLILADEPI-ASLDPKTSKQVMDYLKRI------NK-EDGITVIVNL 213 (253)
T ss_pred HHHHHHHCCCCHHHHH--------HHHHHCCCCCEEEECCCC-CCCCHHHHHHHHHHHHHH------HH-HCCCEEEEEC
T ss_conf 6521321585116899--------998636899589704884-336756789999999998------87-7697799974
Q ss_pred E-ECCCCCCCCHHHHHHHHCCCCEEEEEHHH
Q ss_conf 0-12676554138898852266078980878
Q gi|254780810|r 323 L-VDTGSRMDEVIFEEFKGTGNSEIVLERKI 352 (423)
Q Consensus 323 l-vetg~~~d~~i~~~~~~~~d~~i~L~r~l 352 (423)
= || .----+|=+.|.=+||||.|-.=
T Consensus 214 H~Vd----lA~~Y~dRivGL~~G~iVFDG~p 240 (253)
T TIGR02315 214 HQVD----LAKKYADRIVGLKAGEIVFDGAP 240 (253)
T ss_pred CCHH----HHHHHHHHHHHHHCCCEEECCCH
T ss_conf 6178----78876337766666721453785
No 250
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.96 E-value=0.019 Score=35.20 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=24.5
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
.| -+|+-.+|+||.|+|||||++.|+--.
T Consensus 22 ip-k~GEi~gLiGpNGaGKSTLlk~i~Gll 50 (255)
T cd03236 22 VP-REGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CC-CCCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89-898099998999970999999996798
No 251
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.95 E-value=0.017 Score=35.48 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=26.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
+.|-+|+..+|+|++|+|||||++.|..-.
T Consensus 25 l~i~~G~~v~ivG~sGsGKSTLl~ll~gl~ 54 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 998799999999999985999999996725
No 252
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.95 E-value=0.13 Score=29.72 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=27.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 122204877878999999999986118864699995
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLL 211 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~l 211 (423)
-.-|.|++|.|||.||+.|++.+.. ++..++|+-
T Consensus 143 PLfIyG~~GlGKTHLL~AIgn~i~~--~~~kV~Yvt 176 (455)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVSALRE--SGGKILYVS 176 (455)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEEEC
T ss_conf 7588789999789999999998537--998699974
No 253
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.95 E-value=0.018 Score=35.45 Aligned_cols=212 Identities=17% Similarity=0.239 Sum_probs=95.7
Q ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 44300020001122343247786532136888998865510231222048778789999999999861188646999950
Q gi|254780810|r 133 KIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLI 212 (423)
Q Consensus 133 ~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~li 212 (423)
...|++.+--|++.+..+ + |.-+.|-+|++.+|+|++|+|||||++-+.+-..-..-.+ +|
T Consensus 340 ~I~f~nVsF~Y~~~~~vL------------~--~is~~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I-----~i 400 (593)
T PRK10790 340 TIDVDNVSFAYRDDNLVL------------K--NINLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGEI-----RL 400 (593)
T ss_pred CEEEEEEEEECCCCCHHH------------H--CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-----CC
T ss_conf 089998898459998014------------2--6010448997899879998868999999998556789941-----65
Q ss_pred CCC---HHHHHHHHHHH---C--CEEEECC-------CCCCHHHHHH-HHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 878---78999999840---3--4278236-------6788889999-99999999999997799289998163898776
Q gi|254780810|r 213 DER---PEEVTDMQRSV---Q--GEVISST-------FDESAARHVQ-VAEMVIAKAKCLVEYGLDVVILLDSITRLCRA 276 (423)
Q Consensus 213 gEr---~~ev~e~~~~~---~--~~vv~st-------~d~~~~~~~~-~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA 276 (423)
|-. -=...++.+.+ . ...+..| ..+.....+. ++..+. +.|-+-++-..
T Consensus 401 dG~di~~i~~~~lR~~i~~V~Q~~~LF~gTI~eNi~~g~~~~~~~i~~a~~~a~---------------l~~~i~~lp~G 465 (593)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQ---------------LAELARSLSDG 465 (593)
T ss_pred CCEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH---------------HHHHHHHCCCH
T ss_conf 993244246888863157516665145652999977600236799999999977---------------89999857420
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEE--EEEEECCCCCCCCHHHHHHHHCC--CCEEEEEHHH
Q ss_conf 2001366777677752024665046875225777777850012--11201267655413889885226--6078980878
Q gi|254780810|r 277 YNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTII--GTALVDTGSRMDEVIFEEFKGTG--NSEIVLERKI 352 (423)
Q Consensus 277 ~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~--~t~lvetg~~~d~~i~~~~~~~~--d~~i~L~r~l 352 (423)
|.......|..+|||=-.. +...+.+. ..-.+-++ +|.=+|. ....-|.+.++... ..-|+-.-.|
T Consensus 466 ~dT~vge~G~~LSgGQrQR-iaiARall-------~~p~iliLDEaTSaLD~--~tE~~i~~~l~~~~~~~T~i~IaHRl 535 (593)
T PRK10790 466 LYTPLGEQGNTLSVGQKQL-LALARVLV-------ETPQILILDEATASIDS--GTEQAIQQALAAIREHTTLVVIAHRL 535 (593)
T ss_pred HCCHHCCCCCCCCHHHHHH-HHHHHHHH-------CCCCEEEEECCCCCCCH--HHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 1044238768879999999-99999995-------59899998387778899--99999999999972899899970789
Q ss_pred HHCCCCCCCCCCCCCCC-----CHHHCCCHHHHHHHHHHHH
Q ss_conf 84799974053354221-----0155199999999999999
Q gi|254780810|r 353 ADKRIFPAMDIIKSGTR-----KEDLLVERQDLQKVFMLRR 388 (423)
Q Consensus 353 a~~~~~PAId~~~S~sR-----~~~~l~~~~~~~~~~~~r~ 388 (423)
+.-...-=|=++..|.- .+|++-....+...|....
T Consensus 536 sti~~aD~I~vl~~G~ive~Gth~eLl~~~g~Y~~l~~~Q~ 576 (593)
T PRK10790 536 STIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQL 576 (593)
T ss_pred HHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHH
T ss_conf 89996999999989999997279999869988999999986
No 254
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.95 E-value=0.016 Score=35.66 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=26.3
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
+.|.+|+..+|+|++|+|||||++.|+.-
T Consensus 28 ~~i~~Ge~~aiiG~sGsGKSTL~~~l~Gl 56 (277)
T PRK13642 28 FSITKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99889989999999996899999999638
No 255
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.92 E-value=0.019 Score=35.19 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=26.6
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 865510231222048778789999999999
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
-+.+..|+..+|+||.|+|||||++.|+--
T Consensus 21 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 50 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 779879989999999998599999999768
No 256
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.91 E-value=0.018 Score=35.31 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=26.4
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 886551023122204877878999999999
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
.=+.|-+|...+|+||+|+|||||++.|+-
T Consensus 28 vs~~i~~GE~v~iiG~sGsGKSTLl~~i~G 57 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 289988998999999999409999999966
No 257
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.91 E-value=0.018 Score=35.41 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=41.6
Q ss_pred EECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 22225568878851244300020001122343247786532136888998865510231222048778789999999999
Q gi|254780810|r 118 KVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 118 rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
.+..+.|..|+..-.....- . -.+.+..+++ ..+-+-|.=+.|-+|.-..|+||+|+|||||+.+|+.-
T Consensus 5 ~l~kiFG~~~~~a~~~~~~g-~----~k~~i~~~tg------~~vAV~dvsl~I~~GEi~~lvGpSGsGKSTLLr~i~GL 73 (382)
T TIGR03415 5 NVDVVFGDQPAEALALLDQG-K----TREEILDETG------LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred EEEEECCCCHHHHHHHHHCC-C----CHHHHHHHHC------CEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 78995289989999999879-9----9899988339------99989651748879989999999973499999999759
No 258
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.89 E-value=0.02 Score=35.07 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=27.2
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 6551023122204877878999999999986
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
+.|-+|++.+|+|++|+|||||++.|+.-..
T Consensus 25 l~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~ 55 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9986998999999999989999999967971
No 259
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.85 E-value=0.015 Score=35.93 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=26.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
+.|.+|+..+|+||.|+||||++++|+--+
T Consensus 25 ~~i~~Ge~~aliG~NGaGKSTLl~~i~Gll 54 (277)
T PRK13652 25 FIAGRKQRIAVIGPNGAGKSTLFKHFNGIL 54 (277)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799899899999999947999999996699
No 260
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.84 E-value=0.25 Score=27.83 Aligned_cols=151 Identities=12% Similarity=0.031 Sum_probs=76.8
Q ss_pred EECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 624688876300022225568878851244300020001122343247---------78653213688899886551023
Q gi|254780810|r 105 RAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMEL---------NNPENKDISSRVIDLIAPIGKGQ 175 (423)
Q Consensus 105 r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~---------~~~~p~~~~~~~id~~~pig~gq 175 (423)
+--+.|-+.+.|-|-.++-|.+|+.+-.+...-+-..........-+. -..+-...-.+--.++.-+- .+
T Consensus 11 ~~~~~PFSrgil~rslt~~gi~~~~A~~ia~ei~~~L~~~~~~~i~~~el~~~v~~~l~~~~~~~~a~rY~~~r~~r-~~ 89 (306)
T PRK04220 11 KKYEMPFSKGILARSLTAAGMKPDLAYEIASEIEEELKKEGITKITKEELRRRVYYKLIEKDYEEIAEKYLLWRRIR-KS 89 (306)
T ss_pred CEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CC
T ss_conf 51136631899999999808988899999999999998657716359999999999999844099999999999985-36
Q ss_pred C----EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC-----CEEEECCCCC---------
Q ss_conf 1----222048778789999999999861188646999950878789999998403-----4278236678---------
Q gi|254780810|r 176 R----SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQ-----GEVISSTFDE--------- 237 (423)
Q Consensus 176 r----~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~-----~~vv~st~d~--------- 237 (423)
| .+|-|.+|+|||||...+|.-..-. .++ -.| -++|+.|... .....||++.
T Consensus 90 ~~pliILigGtsGvGKSTlA~~LA~rLgI~-----~vi-sTD----~IREVmR~~~~~el~P~Lh~SSy~Awk~l~~~~~ 159 (306)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIR-----SVI-GTD----SIREVMRKIISKELLPTLHESSYTAWKSLRRPPW 159 (306)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCC-----EEE-CCH----HHHHHHHHCCCCCCCCHHHCCCHHHHHCCCCCCC
T ss_conf 998799985899887899999999970988-----342-221----6999998524830175132275131002367877
Q ss_pred -CH------HHHHHHHHHHH-HHHHHHHHCCCCEEEE
Q ss_conf -88------89999999999-9999999779928999
Q gi|254780810|r 238 -SA------ARHVQVAEMVI-AKAKCLVEYGLDVVIL 266 (423)
Q Consensus 238 -~~------~~~~~~a~~a~-~~a~~~~e~G~dVll~ 266 (423)
++ ..|+.....++ +.-+|+...|.++++=
T Consensus 160 ~~~~~I~Gf~~Q~~~V~~gI~aiI~Ra~~eg~slIIE 196 (306)
T PRK04220 160 EEPDHILGFERHVEPVLVGVEAVIERALKEGISVIIE 196 (306)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8657999999999999999999999999729968998
No 261
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.83 E-value=0.019 Score=35.16 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=36.6
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 2443000200011223432477865321368889988655102312220487787899999999998
Q gi|254780810|r 132 NKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 132 ~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
....|++++-.||...- ...+-|+ ..|-+|+..+|+|++|+|||||++.++.-.
T Consensus 7 ~~Ie~~nvsf~Y~~~~~-----------~~L~~is--l~i~~Ge~vaivG~nGsGKSTLlk~l~Gll 60 (273)
T PRK13632 7 VAIKFENVSFSYTEEFP-----------NALKNVS--FTINEGEYVAILGHNGSGKSTISKILTGLL 60 (273)
T ss_pred CEEEEEEEEEECCCCCC-----------CEEEEEE--EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 05999868998299985-----------6066428--898499899999999986999999997387
No 262
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.82 E-value=0.021 Score=34.90 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=26.1
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
+.+.+|+..+|+||.|+|||||++.|+--
T Consensus 21 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 49 (201)
T cd03231 21 FTLAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 88879959999999999999999999667
No 263
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.81 E-value=0.045 Score=32.76 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=24.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 22204877878999999999986118864
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPEC 205 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v 205 (423)
.+|-||+|+||||+.+.|+..+.++...+
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~~~~~~ 30 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGP 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 89989897789999999999984648853
No 264
>PRK10867 signal recognition particle protein; Provisional
Probab=94.79 E-value=0.32 Score=27.15 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=51.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH---HHHHCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 312220487787899999999998611886469999508787899999---98403427823667888899999999999
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDM---QRSVQGEVISSTFDESAARHVQVAEMVIA 251 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~---~~~~~~~vv~st~d~~~~~~~~~a~~a~~ 251 (423)
.-.+++|--|+||||....+|++....+.--+++++.==-||--+-.. .+.+.-.|+.+.....|. .+++-+++
T Consensus 101 ~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~---~ia~~a~~ 177 (453)
T PRK10867 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPV---DIVNAALK 177 (453)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHH---HHHHHHHH
T ss_conf 699997468885185899999999973898379855887705899999999985198043678899889---99999999
Q ss_pred HHHHHHHCCCCEEE
Q ss_conf 99999977992899
Q gi|254780810|r 252 KAKCLVEYGLDVVI 265 (423)
Q Consensus 252 ~a~~~~e~G~dVll 265 (423)
.|+ ..+.||+|
T Consensus 178 ~ak---~~~~Dvvi 188 (453)
T PRK10867 178 EAK---LKFYDVLL 188 (453)
T ss_pred HHH---HCCCCEEE
T ss_conf 999---77999999
No 265
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=94.79 E-value=0.019 Score=35.26 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=34.8
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 02000112234324778653213688899886551023122204877878999999999
Q gi|254780810|r 138 NLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 138 ~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
.+||+---..+....+.. ..++ |.=+.|.+|.-..|+||+|+|||||+.+|+.
T Consensus 15 ~mtPliev~nlsk~y~~~----~al~--~vsl~I~~GE~~~llGpsGsGKSTllr~i~G 67 (377)
T PRK11607 15 ALTPLLEIRNLTKSFDGQ----HAVD--DVSLTIYKGEIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred CCCCEEEEEEEEEEECCE----EEEC--CCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 888779998589999999----9990--5187999998999999998489999999976
No 266
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.78 E-value=0.022 Score=34.80 Aligned_cols=31 Identities=35% Similarity=0.489 Sum_probs=27.1
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8655102312220487787899999999998
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
=+.+.+|+-.+|+||.|+|||||++.|+.-.
T Consensus 21 sl~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~ 51 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7888499799998899998999999996467
No 267
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.022 Score=34.86 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
+.| .|.-..|+||+|+||||++..|+-
T Consensus 19 f~i-~ge~~~iiGpSGsGKSTll~~i~G 45 (214)
T cd03297 19 FDL-NEEVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred EEC-CCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 862-997999999997359999999984
No 268
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.78 E-value=0.017 Score=35.51 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=27.4
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8655102312220487787899999999998
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
-+.|.+|+..+|+|+.|+|||||++.|+--+
T Consensus 42 sf~i~~GeivgilG~NGaGKSTLl~~i~Gl~ 72 (224)
T cd03220 42 SFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 7898389899999799981999999997587
No 269
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.77 E-value=0.21 Score=28.31 Aligned_cols=105 Identities=10% Similarity=0.018 Sum_probs=57.5
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 12598799988624688876300022225568878851244300020001122343247786532136888998865510
Q gi|254780810|r 94 LKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGK 173 (423)
Q Consensus 94 Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~ 173 (423)
|..|..|.....+...+.....-.|-....-..++++-+...|+.......... .+... ..+-.+-.+-+.+.-+-+
T Consensus 82 Lp~G~Rv~~v~pp~~~~g~~~ltIRk~~~~~~tl~dl~~~G~~~~~~~~~~~~~--~~~~l-~~~~~~~~~~~fL~~aV~ 158 (332)
T PRK13900 82 LPNGYRIQIVFPPACEIGQIIYSIRKPSGMQLTLDDYEKMGAFDETATESLVDE--DDVIL-NELLAEKKIKEFLEHAVI 158 (332)
T ss_pred ECCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHCCCCH--HHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 189846899837831599847999788888899999986498665554201341--56778-876410579999999986
Q ss_pred CCC-EEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 231-2220487787899999999998611
Q gi|254780810|r 174 GQR-SLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 174 gqr-~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
+.+ .+|.|+.|+||||++..++..+..+
T Consensus 159 ~r~NilI~G~TgSGKTTll~aL~~~ip~~ 187 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAI 187 (332)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 48719998888988999999998358953
No 270
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=94.77 E-value=0.02 Score=35.08 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=39.2
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE----ECCCCHHHHHHHHHHHCCEEEE
Q ss_conf 88655102312220487787899999999998611886469999----5087878999999840342782
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL----LIDERPEEVTDMQRSVQGEVIS 232 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~----ligEr~~ev~e~~~~~~~~vv~ 232 (423)
.=+.|.+|+..+|+|++|+|||||++.|+. +.. |+.=.|.+ +..-..++..+|.+.+ +.|+-
T Consensus 31 vs~~i~~GE~l~ivGeSGsGKSTL~r~i~g-l~~--p~sG~I~~~g~~l~~~~~~~~~~~rr~i-~~VfQ 96 (266)
T PRK10419 31 VSLTLKSGETVALLGRSGCGKSTLARLLVG-LES--PSQGNISWRGEPLAKLNRAQRKAFRRDI-QMVFQ 96 (266)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCC--CCCEEEEECCEECCCCCHHHHHHHHCCC-EEEEE
T ss_conf 175888998999999999779999999966-999--9962998899956758999999975473-89973
No 271
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.76 E-value=0.022 Score=34.75 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=27.2
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 6551023122204877878999999999986
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
+.|-+|+-.+|+||.|+||||+++.|+.-+.
T Consensus 20 ~~i~~Ge~~~liGpNGaGKSTllk~i~Gl~~ 50 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8985998999999999869999999976878
No 272
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.76 E-value=0.02 Score=35.13 Aligned_cols=30 Identities=30% Similarity=0.277 Sum_probs=27.0
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
+.|.+|...+|+|+.|+|||||++.|+.-.
T Consensus 33 ~~I~~GEiv~LiG~nGaGKSTLlr~i~Gl~ 62 (257)
T PRK11247 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 588799899999899888999999996589
No 273
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.74 E-value=0.022 Score=34.83 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=25.8
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
+.|.+|+..+|+||.|+|||||++.|+..
T Consensus 32 l~i~~Ge~~~liG~NGaGKSTLl~~l~gl 60 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89879989999999998099999999568
No 274
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.74 E-value=0.013 Score=36.36 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=28.8
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88655102312220487787899999999998611
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
.-+.|-+|+-.+|+||+|+|||||++.|+.-...+
T Consensus 27 is~~i~~Gei~~iiGpnGsGKSTLlk~i~Gl~~p~ 61 (269)
T PRK11831 27 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD 61 (269)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 16688799899999399975999999996798889
No 275
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.71 E-value=0.024 Score=34.62 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=27.2
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999861
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
..+-+||-.+|+||.|+|||||++.|+--...
T Consensus 22 ~~i~~G~i~~l~G~NGaGKSTLlkli~Gl~~p 53 (200)
T PRK13540 22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 89879979999889998799999999778588
No 276
>PRK06696 uridine kinase; Validated
Probab=94.68 E-value=0.11 Score=30.26 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC--CHHHHH
Q ss_conf 136888998865510231--22204877878999999999986118864699995087--878999
Q gi|254780810|r 159 DISSRVIDLIAPIGKGQR--SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE--RPEEVT 220 (423)
Q Consensus 159 ~~~~~~id~~~pig~gqr--~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE--r~~ev~ 220 (423)
++-..+.|.+.-+.-|++ ++|=|++|+||||+...++..+.+.... ++++-+|- +++++.
T Consensus 9 ~~~~~~~~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~--V~~v~~Ddf~~~~~~r 72 (227)
T PRK06696 9 QVVKEIANHILTLNLTRPLRVAIDGITASGKTTFANELAEEIKKRGRP--VIRASIDDFHNPKVIR 72 (227)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC--EEEECCCCCCCCHHHH
T ss_conf 899999999983599986899977899878799999999999746994--8997154434737777
No 277
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.68 E-value=0.024 Score=34.61 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHCCC-----------CHHHHHHHHHHHHCCC
Q ss_conf 99999999999999961269-----------3789999999840289
Q gi|254780810|r 375 VERQDLQKVFMLRRIVSSMN-----------SSDAIEFLIDKLKQTK 410 (423)
Q Consensus 375 ~~~~~~~~~~~~r~~l~~~~-----------~~e~~~~l~~~~~~~~ 410 (423)
++--+++.+...|-+++.-+ ++++.+.|.+.|..|+
T Consensus 446 LSGGek~Rv~lA~~l~~~p~lLiLDEPTn~LDi~s~e~Le~aL~~y~ 492 (556)
T PRK11819 446 LSGGERNRLHLAKTLKSGGNVLLLDEPTNDLDVETLRALEDALLEFP 492 (556)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 88999999999999962989899929775679999999999998779
No 278
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.66 E-value=0.022 Score=34.79 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=25.8
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
+.|.+|+..+|+||.|+|||||++.|+-
T Consensus 22 l~i~~Ge~~aliG~nGaGKSTLl~~i~G 49 (273)
T PRK13547 22 LRIEPGRVTALLGRNGAGKSTLLKVLAG 49 (273)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998998999999999769999999956
No 279
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.025 Score=34.50 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=29.6
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88655102312220487787899999999998611
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
.-..+-.|+|.-|+|++|+||||+++-++++-..+
T Consensus 357 ~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 357 FNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred CCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 65132588768887799987899999997235878
No 280
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=94.65 E-value=0.023 Score=34.73 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 88899886551023122204877878999999999
Q gi|254780810|r 162 SRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 162 ~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
.+.=|.-..|.+|+..+|+||.|+|||||++.|+.
T Consensus 11 ~~L~~isl~v~~Ge~v~iiGpNGaGKSTLlk~i~G 45 (245)
T PRK03695 11 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 45 (245)
T ss_pred CCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 80507489995998999997899419999999846
No 281
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.64 E-value=0.021 Score=35.00 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=40.2
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE----ECCCCHHHHHHHHHHHCCEEEEC
Q ss_conf 655102312220487787899999999998611886469999----50878789999998403427823
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL----LIDERPEEVTDMQRSVQGEVISS 233 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~----ligEr~~ev~e~~~~~~~~vv~s 233 (423)
..|-+|...+|+|++|+|||||+..|+. ... |+.=-|.+ +..-...+..++.+.+ +.|+-.
T Consensus 26 l~i~~Ge~~~ivG~SGsGKSTllr~i~g-L~~--p~sG~I~~~g~~i~~~~~~~~~~~Rr~i-g~VFQ~ 90 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCING-LER--PTSGSVLVDGTDLTLLSGKELRKARRRI-GMIFQH 90 (233)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC-CCC--CCCCEEEECCEECCCCCHHHHHHHHCCC-CEEECC
T ss_conf 8999999999988980589999999967-999--9980899999998979999999986258-779437
No 282
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.63 E-value=0.023 Score=34.70 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=25.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..+-+|+..+|+||.|+|||||++.|+-
T Consensus 21 l~v~~Gei~~iiGpnGaGKSTLl~~i~G 48 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMG 48 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 6887998999996899999999999707
No 283
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=94.62 E-value=0.16 Score=29.21 Aligned_cols=91 Identities=21% Similarity=0.179 Sum_probs=53.0
Q ss_pred CCC-EEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCC-CCCCCCCCCCCCCCCHH--HHHHHHH--H
Q ss_conf 598-7999886246888763000222255688788512443000200011-22343247786532136--8889988--6
Q gi|254780810|r 96 TGD-TVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYP-DKRFNMELNNPENKDIS--SRVIDLI--A 169 (423)
Q Consensus 96 ~GD-~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p-~~~i~le~~~~~p~~~~--~~~id~~--~ 169 (423)
.+| .|.-++|.|.... .+.|+......|++---+.. ...=.... ++.+.-- .+-+.-| .
T Consensus 89 ~~~eTvs~tIRKpS~~~-------------~sL~dy~~~G~F~~ar~~~~~~~~~~~d~--~~~L~el~~~g~~~~Fl~~ 153 (328)
T TIGR02788 89 ENDETVSITIRKPSLVD-------------LSLDDYEEKGFFDTARAVVVPASTELSDK--DEELLELLDAGDIKEFLRL 153 (328)
T ss_pred CCCCEEEEEEECCCCCC-------------CCHHHHHHCCCCCEEEEEECCCCCCCCHH--HHHHHHHHHCCCHHHHHHH
T ss_conf 89885899995264445-------------54799962798544777631443443468--9999999862888799999
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 55102312220487787899999999998611
Q gi|254780810|r 170 PIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 170 pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
-|-.++-..|+|+.|+||||+++.+.+.|=++
T Consensus 154 Ai~~~knIii~GGTgSGKTTf~kal~~~IP~~ 185 (328)
T TIGR02788 154 AIASRKNIIISGGTGSGKTTFLKALVKEIPKD 185 (328)
T ss_pred HHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 98738919999068971899999997327622
No 284
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.60 E-value=0.023 Score=34.67 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=26.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
..|-+|+..+|+|+.|+|||||++.++.-+
T Consensus 29 l~I~~Ge~vaiiG~nGsGKSTL~~~l~Gll 58 (283)
T PRK13640 29 FSIPRGSWTALIGHNGSGKSTISKLINGLL 58 (283)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 699899999999999987999999996403
No 285
>PTZ00035 Rad51; Provisional
Probab=94.55 E-value=0.37 Score=26.78 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHHHHH----CCCCCEEEEE-ECC-CCHHHHHHHHHHH--
Q ss_conf 3213688899886551--0231222048778789999999999861----1886469999-508-7878999999840--
Q gi|254780810|r 157 NKDISSRVIDLIAPIG--KGQRSLIVAPPRTGKTILLQNIAHSIKK----NHPECYLIVL-LID-ERPEEVTDMQRSV-- 226 (423)
Q Consensus 157 p~~~~~~~id~~~pig--~gqr~~i~~~~~~gkt~ll~~ia~~~~~----~~~~v~~i~~-lig-Er~~ev~e~~~~~-- 226 (423)
...||.+.+|-+.-=| -|.--=||+.+|+|||-|-.++|-.++- ..-+-.++|. -=| =||+-+.++-+..
T Consensus 111 ~itTGs~~LD~LLGGGiet~sITEi~Ge~gsGKTQlChqLaV~~QLP~~~GG~~GkvvYIDTEgtFrpeRi~qIA~~~gl 190 (350)
T PTZ00035 111 KFTTGSKQLDRLLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTFRPERIVAIAKRYGL 190 (350)
T ss_pred EECCCCHHHHHHHCCCEECCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 35758578887627894138587897279897899999999990485777798862799968899878999999987099
Q ss_pred ------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf ------342782366788889999999999999999977992899981638987762
Q gi|254780810|r 227 ------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAY 277 (423)
Q Consensus 227 ------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~ 277 (423)
....++-.++ ...++.. +..+.-+....+=-||++||+|-+-|+-
T Consensus 191 d~~~vL~nI~~ara~n--~ehq~~l----l~~~~~~~~e~~vrLlIVDSitalFR~e 241 (350)
T PTZ00035 191 HPTDCLNNIAYAKAYN--CDHQTEL----LIDASAMMADARFALLIVDSATALYRSE 241 (350)
T ss_pred CHHHHHHHEEEEEECC--HHHHHHH----HHHHHHHHHCCCEEEEEEHHHHHHHHHH
T ss_conf 9799853322322068--7889999----9999998511675899854456676654
No 286
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.55 E-value=0.37 Score=26.77 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=23.3
Q ss_pred HHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 510231--222048778789999999999861188
Q gi|254780810|r 171 IGKGQR--SLIVAPPRTGKTILLQNIAHSIKKNHP 203 (423)
Q Consensus 171 ig~gqr--~~i~~~~~~gkt~ll~~ia~~~~~~~~ 203 (423)
.|+++| ..++||.|+||||.+-.+|....-++.
T Consensus 218 ~~~~~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~ 252 (432)
T PRK12724 218 TGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMG 252 (432)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 57777629999899998889999999999999749
No 287
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.54 E-value=0.027 Score=34.24 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=40.7
Q ss_pred HHCCCCHHHCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 51244300020001122-34324778653213688899886551023122204877878999999999986
Q gi|254780810|r 130 VRNKIHFDNLTPLYPDK-RFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 130 ~~~~~~f~~l~p~~p~~-~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
.+-...|.+++--||.. +..++. .=+.|-+|++.+|+|++|+|||||++.+..-..
T Consensus 16 ~~G~I~~~nvsf~Y~~~~~~vL~~--------------inl~I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 72 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKH--------------VKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD 72 (257)
T ss_pred CCCEEEEEEEEEEECCCCCCCEEC--------------EEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 753799998999939899573105--------------389987999999999999819999999960566
No 288
>PRK13542 consensus
Probab=94.54 E-value=0.023 Score=34.72 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=27.3
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 6551023122204877878999999999986
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
+.|.+|+..+|+||.|+|||||++.|+.-+.
T Consensus 39 l~i~~Gei~~liGpNGaGKTTLlk~l~Gll~ 69 (224)
T PRK13542 39 ISLAPGDLLQVMGPNGSGKTSLLRVLSGLMP 69 (224)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7875997999999999999999999957978
No 289
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=94.54 E-value=0.024 Score=34.60 Aligned_cols=57 Identities=23% Similarity=0.422 Sum_probs=36.8
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE--EEECCC----CHHHHHHHHHHH
Q ss_conf 6551023122204877878999999999986118864699--995087----878999999840
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLI--VLLIDE----RPEEVTDMQRSV 226 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i--~~ligE----r~~ev~e~~~~~ 226 (423)
..|-++|=..|+||||+||||+|..|=| .+.-.+.++.- |.+=|+ ..-.+.++++.+
T Consensus 22 ~~I~~n~vTAlIGPSGCGKSTlLR~lNR-MnDl~~~~r~~G~v~f~G~dIy~~~~D~~~LR~~v 84 (248)
T TIGR00972 22 LDIPKNQVTALIGPSGCGKSTLLRSLNR-MNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRKRV 84 (248)
T ss_pred CEECCCEEEEEECCCCCCHHHHHHHHHH-HHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHC
T ss_conf 2003770589877889867899999887-76407881688889864511456566878876225
No 290
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.53 E-value=0.026 Score=34.38 Aligned_cols=58 Identities=21% Similarity=0.254 Sum_probs=37.2
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC-CEEEEEEC-CCCHHHHHHHHHHH
Q ss_conf 8655102312220487787899999999998611886-46999950-87878999999840
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPE-CYLIVLLI-DERPEEVTDMQRSV 226 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~-v~~i~~li-gEr~~ev~e~~~~~ 226 (423)
=..|-+|.-..|+||+|+|||||+..|+. +..-... +.+--.-+ .-..+++..+.+.+
T Consensus 21 sl~i~~Ge~v~i~GpSGsGKSTLl~~i~g-l~~p~sG~i~i~g~~~~~~~~~~~~~~Rr~i 80 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYK-EELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHCCE
T ss_conf 77985998999997999539999999962-9898864999999998989977899986674
No 291
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.52 E-value=0.027 Score=34.23 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=25.9
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 886551023122204877878999999999
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
.=+.|-+|+..+|+||+|+|||||++.++.
T Consensus 21 vsl~i~~Ge~~~iiG~nGaGKSTLl~~l~g 50 (242)
T PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 077887998999999999719999999965
No 292
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.51 E-value=0.03 Score=33.94 Aligned_cols=62 Identities=24% Similarity=0.310 Sum_probs=38.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 65510231222048778789999999999861188646999950878789999998403427823667888899999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEM 248 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~ 248 (423)
..+-+|-+..|.||+|+||||+++++|.-+. |+.-.++ . +|+.|+. -.|+.-|.+++|.
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~-f---~Ge~vs~--------------~~pea~Rq~VsY~ 82 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLL-F---EGEDVST--------------LKPEAYRQQVSYC 82 (223)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHCCC---CCCCEEE-E---CCCCCCC--------------CCHHHHHHHHHHH
T ss_conf 6653885488767887668899999981369---9885288-7---4733443--------------4859999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780810|r 249 VIA 251 (423)
Q Consensus 249 a~~ 251 (423)
+-.
T Consensus 83 ~Q~ 85 (223)
T COG4619 83 AQT 85 (223)
T ss_pred HCC
T ss_conf 728
No 293
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.027 Score=34.20 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=26.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
..|-+|++..|+|++|+|||||++-|..-.
T Consensus 24 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 53 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 998799999999999980999999996686
No 294
>PRK08903 hypothetical protein; Validated
Probab=94.48 E-value=0.16 Score=29.14 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 2136888998865510231-2220487787899999999998611886469999
Q gi|254780810|r 158 KDISSRVIDLIAPIGKGQR-SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL 210 (423)
Q Consensus 158 ~~~~~~~id~~~pig~gqr-~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ 210 (423)
.......+.....-..+.+ ..|.||+|+|||.|++-+++...+..+. ++|+
T Consensus 25 n~~~~~~l~~~~~~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~~~~--~~yl 76 (227)
T PRK08903 25 NAELVTRLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAAASEGGKN--ARYL 76 (227)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC--EEEE
T ss_conf 599999999887438878669998999998889999999999806997--4996
No 295
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=94.48 E-value=0.027 Score=34.24 Aligned_cols=93 Identities=13% Similarity=0.157 Sum_probs=44.9
Q ss_pred HCCCCEEEEEECHHHHH-HHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHH
Q ss_conf 77992899981638987-76200136677767775202466504687522577777785001211201267655413889
Q gi|254780810|r 258 EYGLDVVILLDSITRLC-RAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFE 336 (423)
Q Consensus 258 e~G~dVll~~DslTR~A-rA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~ 336 (423)
|-+-=+|.+=-|++=.+ .|=|.+-.--||.-+.|-.......+ .|-- --..++.| +++-.++.+ +|+--.=
T Consensus 180 e~~iP~lyVSHsl~Ev~rLADrvvvl~~GrV~a~G~~~~v~~~~-~l~p-~~~~~~~g--~~~~~~v~~----~~~~ygL 251 (361)
T TIGR02142 180 ELKIPILYVSHSLDEVARLADRVVVLEDGRVEAAGPLEEVWSSP-DLPP-WLEREEAG--SVLEGVVAE----HDQHYGL 251 (361)
T ss_pred HHCCCEEEEECCHHHHHHHHCEEEEEECCEECCCCCHHHHHCCC-CCCC-CCCCCCCC--EEEEEEEEC----CCCCCCC
T ss_conf 72798899904979998760747874357010368679995365-7772-32578663--365654110----3865320
Q ss_pred HHHHCC-CCEEEEEHHHHHCCCC
Q ss_conf 885226-6078980878847999
Q gi|254780810|r 337 EFKGTG-NSEIVLERKIADKRIF 358 (423)
Q Consensus 337 ~~~~~~-d~~i~L~r~la~~~~~ 358 (423)
.-.... |+||.-.+..+..|--
T Consensus 252 ~~l~l~e~~~l~V~~~~~~~G~~ 274 (361)
T TIGR02142 252 TALRLGEDGHLWVPEKKGPVGAR 274 (361)
T ss_pred EECCCCCCCEEEEECCCCCCCCC
T ss_conf 12015888389972676765852
No 296
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.48 E-value=0.025 Score=34.40 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=26.1
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 886551023122204877878999999999
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
.-+.+-+|.+.+|+|+.|+|||||++.|+-
T Consensus 279 vs~~v~~GE~~~i~G~nGsGKSTLl~~l~G 308 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 578983898899986788879999999808
No 297
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.47 E-value=0.12 Score=30.02 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=42.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 12220487787899999999998611886469999508787899999984034278236678888999999999999999
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKC 255 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~ 255 (423)
..++.||||.|||||++-||+-...|. +..-.-.=||+..+.-+..
T Consensus 53 H~Ll~GPPGlGKTTLA~iiA~E~~~~~---~~tsGP~lek~~DL~~iLt------------------------------- 98 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNI---RITSGPALEKAGDLAALLT------------------------------- 98 (328)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCC---EECCCCCCCCHHHHHHHHH-------------------------------
T ss_conf 057658899889999999999868881---5624500167478999996-------------------------------
Q ss_pred HHHCCCCEEEEEECHHHHHHHHHCC
Q ss_conf 9977992899981638987762001
Q gi|254780810|r 256 LVEYGLDVVILLDSITRLCRAYNVL 280 (423)
Q Consensus 256 ~~e~G~dVll~~DslTR~ArA~~~~ 280 (423)
....+=++++|-|-|+.++.-|+
T Consensus 99 --~l~~~dvLFIDEIHRl~~~vEE~ 121 (328)
T PRK00080 99 --NLEEGDVLFIDEIHRLSPVVEEI 121 (328)
T ss_pred --HCCCCCEEEEHHHHHCCHHHHHH
T ss_conf --08878767650653248889988
No 298
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=94.47 E-value=0.032 Score=33.71 Aligned_cols=78 Identities=17% Similarity=0.292 Sum_probs=43.7
Q ss_pred CEEECCCCC-CCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 002222556-8878851244300020001122343247786532136888998865510231222048778789999999
Q gi|254780810|r 116 LLKVNAINF-DVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNI 194 (423)
Q Consensus 116 L~rV~~vnG-~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~i 194 (423)
|..|++..+ ...+..++....+......-.-.+.+-...-.-.+-+-|++. +.+.=|.-.++|||||+|||++++-+
T Consensus 156 L~~vv~fl~ql~~~~L~~~t~~~~~~~~~~s~~~~~DL~dv~GQ~~akRAle--IAaAGGHNlll~GPPGsGKTmla~r~ 233 (505)
T TIGR00368 156 LKEVVKFLEQLGSEKLPPRTNTKAKSIINVSLIIDLDLKDVKGQQHAKRALE--IAAAGGHNLLLLGPPGSGKTMLASRL 233 (505)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHH--HHHHCCCCEEEECCCCCCHHHHHHHH
T ss_conf 8999999976231017775455531034413201044322545101102677--75313564376782496268999875
Q ss_pred H
Q ss_conf 9
Q gi|254780810|r 195 A 195 (423)
Q Consensus 195 a 195 (423)
-
T Consensus 234 ~ 234 (505)
T TIGR00368 234 Q 234 (505)
T ss_pred H
T ss_conf 1
No 299
>PRK05748 replicative DNA helicase; Provisional
Probab=94.45 E-value=0.099 Score=30.50 Aligned_cols=60 Identities=22% Similarity=0.244 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf 32136888998865-510231222048778789999999999861188646999950878789
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEE 218 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~e 218 (423)
-..||...+|-++. +.+|+=..|-|-|+.|||+++.++|.++..+...-++++ --|-+.+
T Consensus 185 Gi~TG~~~LD~~~~G~~~g~LiviaaRP~mGKTa~alnia~~~a~~~~~~v~~f--SlEM~~~ 245 (448)
T PRK05748 185 GIPTGFRDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIF--SLEMGAE 245 (448)
T ss_pred EEECCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE--ECCCCHH
T ss_conf 105782789998279886737999847998768999999999998569808998--1778888
No 300
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.45 E-value=0.026 Score=34.32 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=25.8
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..|-+|+..+|+||.|+|||||++.|+.
T Consensus 27 l~i~~Gei~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 27 LSINAGEIHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 7887998999999999999999999727
No 301
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=94.43 E-value=0.03 Score=33.95 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=27.4
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999861
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
..|-.|+-.+|+||.|+|||||++.|+--+..
T Consensus 24 l~i~~Gei~~liGpNGaGKSTLl~~i~Gl~~~ 55 (241)
T PRK10895 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR 55 (241)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 89839979999889998699999999678888
No 302
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=94.43 E-value=0.39 Score=26.60 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=10.1
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 4877878999999999986
Q gi|254780810|r 181 APPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 181 ~~~~~gkt~ll~~ia~~~~ 199 (423)
||+|+|||+++.-+|++++
T Consensus 45 GprGtGKts~Ari~AkaLn 63 (563)
T PRK06674 45 GPRGTGKTSIAKVFAKAVN 63 (563)
T ss_pred CCCCCCHHHHHHHHHHHHC
T ss_conf 8998689999999999857
No 303
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.41 E-value=0.03 Score=33.95 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=25.4
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..|-.|+..+|+||.|+|||||++.|+-
T Consensus 22 l~i~~Gei~~iiG~nGaGKSTLl~~i~G 49 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSATLAG 49 (248)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 8984997999999999999999999837
No 304
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.41 E-value=0.029 Score=34.03 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=26.5
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
..|-.|+-.+|+||+|+|||||++.|+.-+
T Consensus 28 ~~i~~Gei~~llG~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEECCCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 898098499999899998899999983787
No 305
>PRK05595 replicative DNA helicase; Provisional
Probab=94.40 E-value=0.1 Score=30.48 Aligned_cols=62 Identities=26% Similarity=0.297 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf 32136888998865-5102312220487787899999999998611886469999508787899
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEV 219 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev 219 (423)
-..||...+|-++- +.+|+=..|-|-|+.|||+++.+||.+++.++..-++++ ..---.+++
T Consensus 183 Gi~TGf~~LD~~t~Gl~~GdLiiiaaRP~mGKTa~alnia~~~a~~~g~~V~~f-SlEMs~~ql 245 (444)
T PRK05595 183 GVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVVIF-SLEMSKEQL 245 (444)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHH
T ss_conf 765884769987459985777999857989807999999999998669937999-588999999
No 306
>PRK08116 hypothetical protein; Validated
Probab=94.38 E-value=0.12 Score=29.89 Aligned_cols=92 Identities=14% Similarity=0.179 Sum_probs=54.2
Q ss_pred CEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHH
Q ss_conf 0022225568878851244300020001122343247786532136888998865510231-222048778789999999
Q gi|254780810|r 116 LLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQR-SLIVAPPRTGKTILLQNI 194 (423)
Q Consensus 116 L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr-~~i~~~~~~gkt~ll~~i 194 (423)
+-|.....+.|.+-.. -.|+++-+-... ..-..+..+-.+-|..+.+-.+ .++.|++|+|||.|+.-|
T Consensus 60 i~rl~~~s~i~~~f~~--~tFeN~~~~~~~---------~~a~~~a~~Y~~~f~~~~~~~~GLll~G~~GtGKThLa~aI 128 (262)
T PRK08116 60 LERLISNSLLDEKFRN--STFENWLFRKGS---------EKAYKVAVKYVKKFEEMKKESVGLLLWGSPGNGKTYLAAAI 128 (262)
T ss_pred HHHHHHHCCCCHHHHH--CCCCCCCCCCCH---------HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 9999986599988981--922255689525---------99999999999989873646861899898999899999999
Q ss_pred HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 999861188646999950878789999998403
Q gi|254780810|r 195 AHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQ 227 (423)
Q Consensus 195 a~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~ 227 (423)
|+.+..+.. .+++. .+.++.+.++
T Consensus 129 a~~l~~~g~--~V~~~-------~~~~ll~~lk 152 (262)
T PRK08116 129 ANELIEKGV--PVVFV-------NVPELLNRIK 152 (262)
T ss_pred HHHHHHCCC--EEEEE-------EHHHHHHHHH
T ss_conf 999998799--39998-------8999999999
No 307
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.34 E-value=0.03 Score=33.96 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=25.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
+.|-+|+..+|+||.|+|||||++.|+-
T Consensus 26 ~~i~~Ge~~aiiG~NGsGKSTLl~~l~G 53 (273)
T PRK13647 26 LVIPEGSKTAILGPNGAGKSTLLLHLNG 53 (273)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8988998999999999759999999966
No 308
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=94.34 E-value=0.015 Score=35.97 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=27.9
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 886551023122204877878999999999986
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
.=+.|.+|...+|+|.+|+||||+++.|+.-..
T Consensus 343 vsf~i~~GE~l~lvG~sGsGKSTl~r~l~gl~~ 375 (623)
T PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVE 375 (623)
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 400358995899976787668999999856646
No 309
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.33 E-value=0.032 Score=33.73 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=27.2
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 6551023122204877878999999999986
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
+.|.+|+-.+|+||.|+|||||++.|+.-..
T Consensus 23 l~i~~Gei~~liGpNGaGKSTLlk~i~Gl~~ 53 (257)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGELP 53 (257)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8986998999999999879999999856757
No 310
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.32 E-value=0.15 Score=29.34 Aligned_cols=53 Identities=19% Similarity=0.415 Sum_probs=36.0
Q ss_pred HHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 36888998865-51023122204877878999999999986118864699995087
Q gi|254780810|r 160 ISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE 214 (423)
Q Consensus 160 ~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE 214 (423)
....++..+.| -|+-++.||-++||+|||||+..+.+....... .+-|+.||-
T Consensus 36 ~a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~--rVaVlAVDP 89 (323)
T COG1703 36 LARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH--RVAVLAVDP 89 (323)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC--EEEEEEECC
T ss_conf 799999997311799837873179988668899999999997796--789999889
No 311
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.32 E-value=0.076 Score=31.25 Aligned_cols=52 Identities=25% Similarity=0.271 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 1368889988655--102312220487787899999999998611886469999
Q gi|254780810|r 159 DISSRVIDLIAPI--GKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL 210 (423)
Q Consensus 159 ~~~~~~id~~~pi--g~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ 210 (423)
.....+.+.++-- +...-..|.||.|.|||.||+-+.+...+++|++.++++
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~ 149 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL 149 (408)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 999999999875668868957998799997899999999999862998648850
No 312
>PRK07667 uridine kinase; Provisional
Probab=94.32 E-value=0.076 Score=31.26 Aligned_cols=41 Identities=27% Similarity=0.320 Sum_probs=30.8
Q ss_pred HHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 510231--2220487787899999999998611886469999508
Q gi|254780810|r 171 IGKGQR--SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLID 213 (423)
Q Consensus 171 ig~gqr--~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~lig 213 (423)
-.|++| ++|=|++|+||||+...|+..+.+... .++++-+|
T Consensus 9 ~~~~~r~iIgIaG~sgSGKTTla~~L~~~l~~~~~--~v~v~~~D 51 (190)
T PRK07667 9 KHKENRFILGIDGLSRSGKTTFVANLKENMKQEGI--PFHIFHID 51 (190)
T ss_pred HCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC--CEEEEECC
T ss_conf 57598699997798978899999999999866598--37999666
No 313
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.31 E-value=0.031 Score=33.78 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=25.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
+.+.+|.-.+|+||+|+|||||++.|+.
T Consensus 26 l~i~~Gei~~iiG~sGsGKSTLl~~i~g 53 (257)
T PRK10619 26 LQANAGDVISIIGSSGSGKSTFLRCINF 53 (257)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 6887997999998999819999999965
No 314
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.29 E-value=0.027 Score=34.18 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=26.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
+.|-+|+-.+|+||.|+|||||++.|+.-.
T Consensus 28 l~I~~Ge~~~iiGpNGaGKSTLlk~i~Gll 57 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 898599799999998839999999997498
No 315
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.27 E-value=0.1 Score=30.47 Aligned_cols=60 Identities=27% Similarity=0.252 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf 32136888998865-510231222048778789999999999861188646999950878789
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEE 218 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~e 218 (423)
-..||...+|-++- +.+|+=..|-|.|+.|||+++.+||.++..+...-++++ --|=++|
T Consensus 176 Gi~TG~~~LD~~~~Gl~~g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~f--SLEMs~e 236 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFF--SLEMSAE 236 (421)
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE--ECCCCHH
T ss_conf 787880789998369998868999854678745999999999998669838999--2579999
No 316
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.27 E-value=0.039 Score=33.16 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=50.7
Q ss_pred HHHHHHHHHHCCCC-----EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCC
Q ss_conf 88998865510231-----2220487787899999999998611886469999508787899999984034278236678
Q gi|254780810|r 163 RVIDLIAPIGKGQR-----SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDE 237 (423)
Q Consensus 163 ~~id~~~pig~gqr-----~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~ 237 (423)
.-++.|+--.|... .++|||||.|||||+.-||+-...|. +..-.-.=|||....-+...
T Consensus 36 ~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~---k~tsGp~leK~gDlaaiLt~------------ 100 (332)
T COG2255 36 EQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL---KITSGPALEKPGDLAAILTN------------ 100 (332)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE---EECCCCCCCCHHHHHHHHHC------------
T ss_conf 999999999984498767478647998768889999999856773---76366201572659999863------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCC
Q ss_conf 88899999999999999999779928999816389877620013
Q gi|254780810|r 238 SAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLM 281 (423)
Q Consensus 238 ~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~ 281 (423)
--.+=++++|-|-|++++--|+-
T Consensus 101 ---------------------Le~~DVLFIDEIHrl~~~vEE~L 123 (332)
T COG2255 101 ---------------------LEEGDVLFIDEIHRLSPAVEEVL 123 (332)
T ss_pred ---------------------CCCCCEEEEEHHHHCCHHHHHHH
T ss_conf ---------------------98677677725531474289896
No 317
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.27 E-value=0.087 Score=30.89 Aligned_cols=51 Identities=25% Similarity=0.366 Sum_probs=34.5
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf 5510231222048778789999999999861188646999950878789999
Q gi|254780810|r 170 PIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTD 221 (423)
Q Consensus 170 pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e 221 (423)
-+.+||=..|.|+||+|||+++.++|.+...++. ..+.+.---+-.+++.+
T Consensus 9 G~~~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g-~~V~~~SlEm~~~~~~~ 59 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQG-KPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHH
T ss_conf 9999818999968999999999999999999779-95999933353889999
No 318
>PRK13409 putative ATPase RIL; Provisional
Probab=94.24 E-value=0.033 Score=33.68 Aligned_cols=31 Identities=35% Similarity=0.442 Sum_probs=26.5
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 5510231222048778789999999999861
Q gi|254780810|r 170 PIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 170 pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
.+-+|++.+|+|+-|+||||++++++--+..
T Consensus 361 ~i~~GEiigIvG~NGaGKTTLlKiLaG~lkP 391 (590)
T PRK13409 361 EIRKGEVIGIVGPNGIGKTTFVKLLAGVLKP 391 (590)
T ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 6604748999888888789999998288778
No 319
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.23 E-value=0.04 Score=33.11 Aligned_cols=24 Identities=38% Similarity=0.715 Sum_probs=21.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 312220487787899999999998
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
.|..|+|+||+||||+.+.|+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 979998999998899999999976
No 320
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=94.23 E-value=0.06 Score=31.95 Aligned_cols=44 Identities=30% Similarity=0.447 Sum_probs=29.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHH
Q ss_conf 1222048778789999999999861188-6469999508787899
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKNHP-ECYLIVLLIDERPEEV 219 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~-~v~~i~~ligEr~~ev 219 (423)
-.+|||+.|+||||||..++....+-.+ +.--|++.=--|+-|.
T Consensus 518 hT~IfG~~G~GKTtLl~fL~a~~~ky~~~~a~~~~~fDkd~g~~~ 562 (931)
T TIGR00929 518 HTLIFGPTGSGKTTLLNFLLAQLQKYKPNFALTIFAFDKDRGMEI 562 (931)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHH
T ss_conf 777888889846999999999974248898706999887898210
No 321
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.23 E-value=0.034 Score=33.55 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=26.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
..|-+|...+|+|+.|+|||||++.|+--.
T Consensus 23 l~i~~Ge~vaiiG~nGsGKSTL~~~l~Gll 52 (274)
T PRK13644 23 LVIKKGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 798489999999999980999999997068
No 322
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.22 E-value=0.035 Score=33.49 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=27.1
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 6551023122204877878999999999986
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
+.+..|+..+|+|+.|+|||||++.|+.-+.
T Consensus 23 f~i~~Gei~~l~G~NGaGKTTLlk~i~Gl~~ 53 (206)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLLAGLLP 53 (206)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8986994999989999989999999958878
No 323
>PRK10908 cell division protein FtsE; Provisional
Probab=94.22 E-value=0.03 Score=33.88 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=36.3
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE----ECCCCHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998611886469999----5087878999999840
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL----LIDERPEEVTDMQRSV 226 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~----ligEr~~ev~e~~~~~ 226 (423)
+.|-+|.-.+|+||+|+|||||++.|+--.. |+.=-|.+ +-..+.+++..+.+.+
T Consensus 23 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~~~~~r~~i 81 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC---CCCEEEEECCEECCCCCHHHHHHHHHCC
T ss_conf 7996998999999998079999999965999---9862999999998756666779987302
No 324
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.25 Score=27.91 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=40.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 12220487787899999999998611886469999508787899999984034278236678888999999999999999
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKC 255 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~ 255 (423)
.++++||||+|||.|.+.+|+....+ ++-..+- +-+..|.-. .+..+...-.
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~------fi~v~~~--~l~sk~vGe--------------------sek~ir~~F~ 329 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSR------FISVKGS--ELLSKWVGE--------------------SEKNIRELFE 329 (494)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC------EEEECCH--HHHHHHHHH--------------------HHHHHHHHHH
T ss_conf 69998899975899999987544982------4884335--554077659--------------------9999999999
Q ss_pred HHHCCCCEEEEEECHHHHHHHH
Q ss_conf 9977992899981638987762
Q gi|254780810|r 256 LVEYGLDVVILLDSITRLCRAY 277 (423)
Q Consensus 256 ~~e~G~dVll~~DslTR~ArA~ 277 (423)
.+.+..-.+|++|.+..++...
T Consensus 330 ~A~~~~p~iifiDEiDs~~~~r 351 (494)
T COG0464 330 KARKLAPSIIFIDEIDSLASGR 351 (494)
T ss_pred HHHHCCCCEEEHHHHHHHHCCC
T ss_conf 9996699889748866674128
No 325
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.20 E-value=0.029 Score=33.99 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=26.6
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8655102312220487787899999999998
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
-+.+-.|++..|++|+|+|||||+.-||-..
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 8760678579997788865788999987424
No 326
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.20 E-value=0.036 Score=33.38 Aligned_cols=74 Identities=23% Similarity=0.340 Sum_probs=45.0
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE---ECC-CCHHHHHHHHHHHCCEEEECC---CCCCHHH
Q ss_conf 655102312220487787899999999998611886469999---508-787899999984034278236---6788889
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL---LID-ERPEEVTDMQRSVQGEVISST---FDESAAR 241 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~---lig-Er~~ev~e~~~~~~~~vv~st---~d~~~~~ 241 (423)
..|.+|--..|+||+|+||||||..|+- +.+ |+.-.+++ -+. -...+.+.|++..-+-|+=+- .+-++..
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~-ld~--pt~G~v~i~g~~~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~E 102 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGG-LDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLE 102 (226)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC-CCC--CCCCEEEECCEECCCCCHHHHHHHHHHHEEEECCCCCCCCCCCHHH
T ss_conf 8874998999989999989999999964-667--8884699998886758988999997774899875677789888999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780810|r 242 HVQV 245 (423)
Q Consensus 242 ~~~~ 245 (423)
.+..
T Consensus 103 Nv~l 106 (226)
T COG1136 103 NVEL 106 (226)
T ss_pred HHHH
T ss_conf 9986
No 327
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=94.20 E-value=0.26 Score=27.70 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 2220487787899999999998
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
..+-|+||+|||++..++....
T Consensus 15 i~laG~pGAGKS~~~~~~~~~~ 36 (191)
T pfam06414 15 VLLGGQPGAGKTELARALLEEL 36 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9995799888899999998753
No 328
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.035 Score=33.45 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
..+.+|+..+|+|+.|+|||||+..|+.-.
T Consensus 20 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~ 49 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 898799799998788999899999995884
No 329
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.18 E-value=0.035 Score=33.45 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=26.2
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
+.|.+|+..+|+||.|+|||||++.|+--
T Consensus 26 ~~v~~Gei~~liGpnGaGKSTL~~~i~Gl 54 (255)
T PRK11300 26 LEVREQEVVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89899979999989996499999999679
No 330
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=94.17 E-value=0.046 Score=32.68 Aligned_cols=64 Identities=23% Similarity=0.250 Sum_probs=41.3
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC---CCEEEEEECCCCHHHHHHHHHHHCCE
Q ss_conf 98865510231222048778789999999999861188---64699995087878999999840342
Q gi|254780810|r 166 DLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHP---ECYLIVLLIDERPEEVTDMQRSVQGE 229 (423)
Q Consensus 166 d~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~---~v~~i~~ligEr~~ev~e~~~~~~~~ 229 (423)
=.+.-+-++.=.+|.|||||||||+.-.|...+.+..+ .+..=|.|+-==|.--.-+.+.+...
T Consensus 234 ~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~ 300 (753)
T TIGR01447 234 VAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKA 300 (753)
T ss_pred HHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 9999986087689987988977899999999999989864997404788668447999999999988
No 331
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.16 E-value=0.033 Score=33.66 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=25.5
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
+.+-.|+-.+|+||+|+|||||++.|+-
T Consensus 30 ~~v~~Gei~~ilGpnGaGKSTLl~~l~G 57 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred EEEECCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 8990881999998999519999999857
No 332
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.16 E-value=0.037 Score=33.33 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=27.8
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 865510231222048778789999999999861
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
=+.+.+|+-.+|+||.|+|||||++.|+--+..
T Consensus 20 s~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p 52 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 899889989999999998599999999779889
No 333
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=94.16 E-value=0.066 Score=31.66 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=41.7
Q ss_pred HHHHHHHHHH--HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 3688899886--55102312220487787899999999998611886469999508787899999
Q gi|254780810|r 160 ISSRVIDLIA--PIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDM 222 (423)
Q Consensus 160 ~~~~~id~~~--pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~ 222 (423)
++..=+|-+. =|.+|-=.||=|.||+||||||.+.+-.++++.+ .+.|+ -||-.=.=..|
T Consensus 87 s~~~ElDrVLGGGivpGsliLiGG~PG~GKSTLLLqV~~~LA~~~~--~~LYV-sGEES~~Q~kl 148 (481)
T TIGR00416 87 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNSM--KVLYV-SGEESLQQIKL 148 (481)
T ss_pred CCCCCCCEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC--CEEEE-EECCHHHHHHH
T ss_conf 0664100110672224416984688996356789999999840488--16899-72301677888
No 334
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.16 E-value=0.034 Score=33.60 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=36.6
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC--CCCHHHHHHHHHHH
Q ss_conf 8865510231222048778789999999999861188646999950--87878999999840
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLI--DERPEEVTDMQRSV 226 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~li--gEr~~ev~e~~~~~ 226 (423)
.-+.|.+|+..+|+|+.|+|||||++.|+--...+.-.+.+--.-+ ..+.+.+.++.+.+
T Consensus 26 Vsl~i~~Ge~~aiiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i 87 (280)
T PRK13649 26 VNLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDDTDITSHSKNKEIKSIRKKV 87 (280)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCHHHHHHHHHHE
T ss_conf 26898799899999599986999999996699988608999999987778201399998764
No 335
>PRK09183 transposase/IS protein; Provisional
Probab=94.16 E-value=0.085 Score=30.94 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=29.9
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 86551023122204877878999999999986118864
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPEC 205 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v 205 (423)
.-=|-+++-+.++||+|+|||.|+.-++.....+.-.|
T Consensus 95 ~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v 132 (258)
T PRK09183 95 LSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKV 132 (258)
T ss_pred CCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 81665588679989999868999999999999879939
No 336
>PRK06217 hypothetical protein; Validated
Probab=94.16 E-value=0.1 Score=30.47 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=32.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 3122204877878999999999986118864699995087
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE 214 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE 214 (423)
+|.+|+|.+|+|||||...++......|-+..-.+-+=+.
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~~~W~p~~ 41 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEALDLPHLDTDDFFWLPTD 41 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCEECCCC
T ss_conf 6799978998878999999999759896864555356899
No 337
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.15 E-value=0.06 Score=31.93 Aligned_cols=81 Identities=20% Similarity=0.314 Sum_probs=47.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC--CCCHHHH----------HHHHHHHCC-------EEEEC
Q ss_conf 0231222048778789999999999861188646999950--8787899----------999984034-------27823
Q gi|254780810|r 173 KGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLI--DERPEEV----------TDMQRSVQG-------EVISS 233 (423)
Q Consensus 173 ~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~li--gEr~~ev----------~e~~~~~~~-------~vv~s 233 (423)
+|.=..|.||+|+||+||.+++-... .....+--. --||-|| .||.+.+.. ++.-
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-----~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~g- 76 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-----KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHG- 76 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC-----CEEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEEECC-
T ss_conf 86399998998888899999998634-----937999852679999875780247577999999875687478877719-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 667888899999999999999999779928999816
Q gi|254780810|r 234 TFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDS 269 (423)
Q Consensus 234 t~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~Ds 269 (423)
..--.| ....+-....|+||++-+|=
T Consensus 77 nyYGT~----------~~~ve~~~~~G~~vildId~ 102 (191)
T COG0194 77 NYYGTS----------REPVEQALAEGKDVILDIDV 102 (191)
T ss_pred CCCCCC----------HHHHHHHHHCCCEEEEEEEH
T ss_conf 732486----------88999998669908999853
No 338
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=94.15 E-value=0.031 Score=33.86 Aligned_cols=28 Identities=32% Similarity=0.305 Sum_probs=23.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
+.+-+|.-.+|+|+.|+|||||++.|+-
T Consensus 305 ~~v~~GEi~gi~G~nGsGKsTL~k~l~G 332 (520)
T TIGR03269 305 LEVKEGEIFGIVGTSGAGKTTLSKIIAG 332 (520)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 8972896899987888878999999948
No 339
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.14 E-value=0.42 Score=26.40 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 8889988655102312-220487787899999999998611
Q gi|254780810|r 162 SRVIDLIAPIGKGQRS-LIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 162 ~~~id~~~pig~gqr~-~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
++.+-...--||=.-+ ++.||+|+|||+++..+|+++...
T Consensus 23 v~~L~nAi~~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~ 63 (523)
T PRK08451 23 SKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFSRALVCE 63 (523)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999859967158757899868899999999997599
No 340
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=94.12 E-value=0.02 Score=35.06 Aligned_cols=62 Identities=26% Similarity=0.390 Sum_probs=45.5
Q ss_pred CCCHHH-HHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 688788-512443000200011223432477865321368889988655102312220487787899999999998
Q gi|254780810|r 124 FDVPER-VRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 124 G~~~d~-~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
.++++. ..-+..|.+.+-.||.... -..+.||+ -|--||+.-+||.||+|||||...|-|--
T Consensus 350 ~~~~~RPv~G~~eFR~v~~~Yp~~~~-----------~aL~~i~l--~~~~G~~vALVGRSGSGKsTlv~LlPRFy 412 (603)
T TIGR02203 350 TRALERPVRGRVEFRNVTFRYPGRDR-----------PALDSISL--VVEPGETVALVGRSGSGKSTLVNLLPRFY 412 (603)
T ss_pred CCCCCCCCEEEEEEEEEEEEECCCCH-----------HHHCCCCC--EECCCCEEEEECCCCCHHHHHHHHCCCCC
T ss_conf 82688851124888766665378872-----------41236665--11587359987068853899985523660
No 341
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=94.11 E-value=0.035 Score=33.50 Aligned_cols=55 Identities=18% Similarity=0.353 Sum_probs=34.8
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE----ECCCCHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998611886469999----5087878999999840
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL----LIDERPEEVTDMQRSV 226 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~----ligEr~~ev~e~~~~~ 226 (423)
..|.+|+-.+|+|++|+|||||+..|.. +.. |+.=-|.+ +..-.+++.+.+++.+
T Consensus 26 l~I~~Gei~giIG~SGaGKSTLlr~i~g-L~~--ptsG~I~~~G~dl~~l~~~~l~~~Rr~I 84 (343)
T PRK11153 26 LHVPAGQIYGVIGASGAGKSTLIRCVNL-LER--PTSGSVIVDGQDLTTLSESELTKARRQI 84 (343)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC-CCC--CCCEEEEECCEECCCCCHHHHHHHHCCE
T ss_conf 8998998999999999869999999965-999--9963999999999879988999986386
No 342
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.10 E-value=0.037 Score=33.31 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=27.1
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8655102312220487787899999999998
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
-+.|.+|+-.+|+||.|+||||++++|+--.
T Consensus 20 s~~v~~Gei~~llGpNGAGKSTll~~i~Gl~ 50 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 6798999599999999961999999997799
No 343
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.10 E-value=0.036 Score=33.42 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=26.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
+.|-+|++.+|+|++|+|||||++.+..-.
T Consensus 23 ~~i~~G~~vaivG~sGsGKSTll~ll~gl~ 52 (237)
T cd03252 23 LRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 998799999999999985999999996776
No 344
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.10 E-value=0.45 Score=26.16 Aligned_cols=152 Identities=20% Similarity=0.260 Sum_probs=85.1
Q ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH---H---------CCE-EEECC---
Q ss_conf 5102312220487787899999999998611886469999508787899999984---0---------342-78236---
Q gi|254780810|r 171 IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRS---V---------QGE-VISST--- 234 (423)
Q Consensus 171 ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~---~---------~~~-vv~st--- 234 (423)
|-.||=.+|.|+-++|||+|-++++-+...|.. .+-++ .-|- .+.||... + .+. .+.+.
T Consensus 25 iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~--~v~yv-sTe~--T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~ 99 (235)
T COG2874 25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGY--RVTYV-STEL--TVREFIKQMESLSYDVSDFLLSGRLLFFPVNLE 99 (235)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC--EEEEE-EECH--HHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCC
T ss_conf 746769999888985488999999998870895--48999-8403--599999988863887168775062689993245
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCC
Q ss_conf -6788889999999999999999977992899981638987762001366777677752024665046875225777777
Q gi|254780810|r 235 -FDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEG 313 (423)
Q Consensus 235 -~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~ 313 (423)
++......-..-...++.-+ -.-+|| +++||+|-+|.-- -+-+++ .|+.-.|+.-..
T Consensus 100 ~~~~~~~~~~~~L~~l~~~~k---~~~~dV-iIIDSls~~~~~~--------------~~~~vl----~fm~~~r~l~d~ 157 (235)
T COG2874 100 PVNWGRRSARKLLDLLLEFIK---RWEKDV-IIIDSLSAFATYD--------------SEDAVL----NFMTFLRKLSDL 157 (235)
T ss_pred CCCCCHHHHHHHHHHHHHHHH---HHCCCE-EEEECCCHHHHCC--------------CHHHHH----HHHHHHHHHHHC
T ss_conf 422573778999999975577---523778-9995343776526--------------499999----999999998728
Q ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHH
Q ss_conf 8500121120126765541388988522660789808788
Q gi|254780810|r 314 GSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIA 353 (423)
Q Consensus 314 Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la 353 (423)
| =+++.|+= ++.+||-...-++++.|+++-|+-+=.
T Consensus 158 g-KvIilTvh---p~~l~e~~~~rirs~~d~~l~L~~~~~ 193 (235)
T COG2874 158 G-KVIILTVH---PSALDEDVLTRIRSACDVYLRLRLEEL 193 (235)
T ss_pred C-CEEEEEEC---HHHCCHHHHHHHHHHHHEEEEEEHHHH
T ss_conf 9-78999947---343378999999875202589870231
No 345
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=94.10 E-value=0.035 Score=33.47 Aligned_cols=113 Identities=21% Similarity=0.265 Sum_probs=69.1
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH-HHHHCCCCC----EEEEEECCCCHHHHHHHHHHHCCE------EE--ECCC
Q ss_conf 6551023122204877878999999999-986118864----699995087878999999840342------78--2366
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH-SIKKNHPEC----YLIVLLIDERPEEVTDMQRSVQGE------VI--SSTF 235 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~-~~~~~~~~v----~~i~~ligEr~~ev~e~~~~~~~~------vv--~st~ 235 (423)
..+--|+=..+.|++|+||||||++|=. |.-.+..-- =-++=|+.=-|+||-+.++..-|= |+ +|+-
T Consensus 29 l~V~aGEcv~L~G~SGaGKSTlLk~lYaNYlp~~G~i~~~H~G~~~DL~~a~pr~vl~vRr~tiGYVSQFLRViPRvsal 108 (224)
T TIGR02324 29 LTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSAL 108 (224)
T ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCHHHHHHHHHHHCCCEEEEEEECCCCCHH
T ss_conf 78736735885368887678999976630474686777762404767507684577877300335155530312886728
Q ss_pred C---CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 7---88889999999999999999977992899981638987762001366777677752024
Q gi|254780810|r 236 D---ESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDAN 295 (423)
Q Consensus 236 d---~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~ 295 (423)
| ||....=...+.|-.+|+. =|+||=-+-|+...|.- |-|||--..
T Consensus 109 evV~ePL~~~G~~~~~A~~~A~~-------------LL~rLniPERLW~LpPa-TFSGGEqQR 157 (224)
T TIGR02324 109 EVVAEPLLERGVPREAARARARE-------------LLARLNIPERLWSLPPA-TFSGGEQQR 157 (224)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH-------------HHHHCCCCHHHCCCCCC-CCCCCHHHH
T ss_conf 88878798728958999999999-------------99755740244288788-656605899
No 346
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.036 Score=33.44 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=26.3
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 886551023122204877878999999999
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
.-..|-+|+-.+|+||+|+|||||++.|+.
T Consensus 26 is~~i~~Ge~~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 26 ISGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 388992883999999999988999999837
No 347
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.08 E-value=0.039 Score=33.20 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=27.4
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 88655102312220487787899999999998
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
.-+.|-+|+-.+|+|+.|+|||||++.|+.-.
T Consensus 24 isl~i~~Gei~~liG~NGaGKSTLl~~i~G~~ 55 (237)
T PRK11614 24 VSLHINQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 27898699799998799975999999996799
No 348
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.07 E-value=0.038 Score=33.25 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=26.5
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 865510231222048778789999999999
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
=+.|-+|+..+|+|+.|+|||||++.|+--
T Consensus 26 sl~I~~Ge~~aiiG~NGaGKSTLl~~i~Gl 55 (285)
T PRK13636 26 NINIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (285)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 789879989999999998099999999659
No 349
>PRK07263 consensus
Probab=94.07 E-value=0.14 Score=29.53 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 32136888998865-510231222048778789999999999861188646999
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIV 209 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~ 209 (423)
-..||..-+|-++- +-+|+=..|-|-|+.|||+++.+||.++..++...++++
T Consensus 185 Gi~TGf~~LD~~t~Gl~~GdLiviaaRPsmGKTa~alnia~~iA~~~~~~V~~f 238 (453)
T PRK07263 185 GLPTGFRDLDKITTGLHPDQLIILAARPAVGKTAFVLNIAQNVGTKQKKTVAIF 238 (453)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 675885879977328997868999727888478999999999998559828999
No 350
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.07 E-value=0.037 Score=33.28 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=29.6
Q ss_pred HHCCCCEEEEEECHHHH-HHHHHCCCCCCCCCCCCCCCHHHHHHCHH
Q ss_conf 97799289998163898-77620013667776777520246650468
Q gi|254780810|r 257 VEYGLDVVILLDSITRL-CRAYNVLMPSSGKILTGGVDANALQRPKR 302 (423)
Q Consensus 257 ~e~G~dVll~~DslTR~-ArA~~~~~~~~g~~~~gg~~~~~l~~~~~ 302 (423)
.+.|.-++++--++.-. ..|-+.+....|+...-|-+...+..|..
T Consensus 176 ~~~~~til~VTHd~~e~~~laD~v~vm~~G~i~~~G~~~ev~~~p~~ 222 (352)
T PRK11144 176 QEINIPILYVSHSLDEILRLADHVVVLEQGKVKAFGPLEEVWGSSAM 222 (352)
T ss_pred HHHCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 97398899993999999986999999989999998699998749120
No 351
>PRK08181 transposase; Validated
Probab=94.06 E-value=0.092 Score=30.73 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=28.1
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 551023122204877878999999999986118
Q gi|254780810|r 170 PIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNH 202 (423)
Q Consensus 170 pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~ 202 (423)
=|-++|-+.++||||+|||.|+.-++.....+.
T Consensus 102 fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G 134 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIENG 134 (269)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 886487089989999878899999999999879
No 352
>PRK08082 consensus
Probab=94.05 E-value=0.14 Score=29.55 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 32136888998865-5102312220487787899999999998611
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
-..||.+-+|-++. +.+|+=..|-|-|+.|||+++.+||.++..+
T Consensus 185 Gi~TGf~~LD~lt~G~~~g~LiviaaRPsmGKTa~alnia~~~a~~ 230 (453)
T PRK08082 185 GIPTGFTELDRMTAGFQRNDLIIVAARPSVGKTAFALNIAQNVATK 230 (453)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 5548848888641477758579998678875789999999999985
No 353
>pfam04665 Pox_A32 Poxvirus A32 protein. The A32 protein is thought to be involved in viral DNA packaging.
Probab=94.05 E-value=0.39 Score=26.63 Aligned_cols=86 Identities=16% Similarity=0.229 Sum_probs=50.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------CCEEEECCCCCCHHHHHHHH
Q ss_conf 023122204877878999999999986118864699995087878999999840------34278236678888999999
Q gi|254780810|r 173 KGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------QGEVISSTFDESAARHVQVA 246 (423)
Q Consensus 173 ~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------~~~vv~st~d~~~~~~~~~a 246 (423)
.-=|+.|+|++|.|||+.|..+-+.+...++-+.++. - +...- .-+|.--|..+.++ .+-
T Consensus 12 ~pFrmaivGgSGSGKT~yLlsLf~tlv~kykhIfLfT---p--------v~N~~Yd~YVwPdHV~~vtt~eele---Y~L 77 (241)
T pfam04665 12 APFRMAIVGGSGSGKTTYLLSLLRTLVRKFKHIFLFT---P--------VYNNAYDGYVWPDHIFKVTTNEELE---YAL 77 (241)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEEEEEC---C--------CCCCCCCCCCCCCCEEEECCHHHHH---HHH
T ss_conf 8735999815887566999999999977415899962---4--------4673236525777325625723577---899
Q ss_pred HHHHHHHHHHHH--CCC----CEEEEEECHHH
Q ss_conf 999999999997--799----28999816389
Q gi|254780810|r 247 EMVIAKAKCLVE--YGL----DVVILLDSITR 272 (423)
Q Consensus 247 ~~a~~~a~~~~e--~G~----dVll~~DslTR 272 (423)
-...+..|.|.. +|. +.|+++|++--
T Consensus 78 ~~~k~kIek~~~~~~~~k~~~~fLiIlDD~Gd 109 (241)
T pfam04665 78 SKTKEKIEKFSKKASNQKENFRFLIILDDLGD 109 (241)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
T ss_conf 99999999999860266641048999625553
No 354
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=94.04 E-value=0.024 Score=34.54 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=26.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
..|-+|+-.+|+||.|+|||||++.|+.-.
T Consensus 23 l~i~~Gei~~liGpNGaGKSTLlk~i~Gl~ 52 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899799999999981999999997598
No 355
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.04 E-value=0.052 Score=32.35 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=27.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 655102312220487787899999999998611
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
+.+-+|+-.+|+||.|+|||||++.|+--...+
T Consensus 23 ~~i~~Gei~~llG~NGaGKSTLl~~i~Gl~~p~ 55 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT 55 (220)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 898499599999899973999999996698788
No 356
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.04 E-value=0.036 Score=33.41 Aligned_cols=34 Identities=12% Similarity=0.273 Sum_probs=28.0
Q ss_pred HHHH-HHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 8899-886551023122204877878999999999
Q gi|254780810|r 163 RVID-LIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 163 ~~id-~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
+++| .=..|.+|...+|+|+.|+|||||++.++-
T Consensus 25 ~AL~~vsl~i~~Ge~~aIiG~nGsGKSTL~~~l~G 59 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNG 59 (289)
T ss_pred EEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 58653288988998999999999579999999965
No 357
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.98 E-value=0.14 Score=29.56 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=25.3
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 102312220487787899999999998611886
Q gi|254780810|r 172 GKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPE 204 (423)
Q Consensus 172 g~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~ 204 (423)
|+=.-.++.||||+|||+++..+|+.+..++.+
T Consensus 34 ~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~ 66 (337)
T PRK12402 34 GNLPHLVVYGPSGSGKTAAVRALARELYGDPWE 66 (337)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 998769888929848999999999996799756
No 358
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.98 E-value=0.041 Score=33.05 Aligned_cols=31 Identities=32% Similarity=0.427 Sum_probs=26.5
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 6551023122204877878999999999986
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
+-+-+|+..+|+||.|+||||+++.|+..+.
T Consensus 21 ~~i~~ge~~~l~G~NGsGKTTl~~~l~G~~~ 51 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9987999999998999849999999848988
No 359
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.04 Score=33.10 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=26.2
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
+.+-+|+..+|+||.|+|||||+++|+--.
T Consensus 21 ~~i~~Gei~~iiGpnGaGKSTl~~~i~Gl~ 50 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 798899899999999973999999997599
No 360
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.94 E-value=0.051 Score=32.39 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=35.7
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
Q ss_conf 886551023122204877878999999999986118864699995087878999
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVT 220 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~ 220 (423)
.-+.|-+|+-.+++||.|+||||++++|+--+..+.-.+.+--.-+-..++++.
T Consensus 19 is~~v~~Gei~gllGpNGAGKSTll~~i~Gl~~p~~G~i~i~G~~~~~~~~~~r 72 (220)
T cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHH
T ss_conf 267988983999999998719999999976978896289999999883989998
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.94 E-value=0.043 Score=32.91 Aligned_cols=33 Identities=39% Similarity=0.585 Sum_probs=27.5
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 988655102312220487787899999999998
Q gi|254780810|r 166 DLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 166 d~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
|.=.-|-+|.|.+|+||-|+|||||++.|+-.+
T Consensus 340 ~~s~~i~~gdrIaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 726776589889998999877899999985213
No 362
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=93.91 E-value=0.038 Score=33.22 Aligned_cols=47 Identities=23% Similarity=0.427 Sum_probs=33.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf 655102312220487787899999999998611886469999508787899
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEV 219 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev 219 (423)
.-|.+|--..|||.||+||||||+-+. +. |.|..=-|+ .-|+.=+..
T Consensus 26 l~i~~GE~~~IvG~SGSGKSTLLHlLG-GL--D~PT~G~v~-f~G~~l~~l 72 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLG-GL--DNPTSGEVL-FNGQSLSKL 72 (221)
T ss_pred CEEECCCEEEEECCCCCCHHHHHHHHH-CC--CCCCCCEEE-ECCCCHHHC
T ss_conf 123066337987367871689999873-06--899631589-706323440
No 363
>PRK08760 replicative DNA helicase; Provisional
Probab=93.89 E-value=0.14 Score=29.52 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
Q ss_conf 32136888998865-51023122204877878999999999986118864699995087878999
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVT 220 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~ 220 (423)
-..||..-+|-++. +-+|+=..|-|-|+.|||+++.+||.++..+....++++ ..---.+++.
T Consensus 211 Gi~TG~~~LD~~t~Gl~~G~LiViaaRPsmGKTalalnia~~~A~~~~~~V~~f-SLEMs~~ql~ 274 (476)
T PRK08760 211 GLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVF-SMEMSASQLA 274 (476)
T ss_pred ECCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHH
T ss_conf 367796889974469987777999877887478999999999998379978997-0369999999
No 364
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.89 E-value=0.035 Score=33.51 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=37.2
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 4300020001122343247786532136888998-86551023122204877878999999999
Q gi|254780810|r 134 IHFDNLTPLYPDKRFNMELNNPENKDISSRVIDL-IAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 134 ~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~-~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..-.+|...|+..+=.... .-.++++|. =+.|.+|...+|+|.+|+|||||++.|+.
T Consensus 6 L~v~~L~~~f~~~~g~~~~------~~~v~Av~~Vsl~i~~GE~lgiVGeSGsGKSTL~~~l~g 63 (327)
T PRK11308 6 LQAIDLKKHYPVKRGLFKP------ERLVKALDGVSFNLERGKTLAVVGESGCGKSTLARLLTM 63 (327)
T ss_pred EEEECCEEEEECCCCCCCC------CCEEEEECCEEEEECCCCEEEEECCCCHHHHHHHHHHHC
T ss_conf 9996779996568877688------764888506067988999999999983199999999956
No 365
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.88 E-value=0.053 Score=32.28 Aligned_cols=53 Identities=26% Similarity=0.459 Sum_probs=38.8
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 4300020001122343247786532136888998865510231222048778789999999999861
Q gi|254780810|r 134 IHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 134 ~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
..|++..--|+..+..++. .-..|-+|++.+|+|++|+||||+++-+.+-...
T Consensus 329 I~f~~v~f~y~~~~~vl~~--------------is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKD--------------ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred EEEEEEEEECCCCCCCCCC--------------CEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 7999878975998761105--------------2277548987888558888578999999861588
No 366
>PRK08694 consensus
Probab=93.87 E-value=0.14 Score=29.62 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 32136888998865-510231222048778789999999999861188646999
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIV 209 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~ 209 (423)
-..||.+-+|-++- +-+|+=..|-|-|+.|||+++.+||.++..+....++++
T Consensus 200 Gi~TG~~~LD~~t~Gl~~G~LiVIaaRPsmGKTalalnia~~~a~~~~~~V~~f 253 (468)
T PRK08694 200 GVPTGFIDLDKKTSGLQPGDLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVF 253 (468)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 155796889876448887847999617865378999999999998479847997
No 367
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.87 E-value=0.043 Score=32.89 Aligned_cols=56 Identities=18% Similarity=0.401 Sum_probs=34.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998611886469999-5087878999999840
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSV 226 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~ 226 (423)
..+.+|....|+||||+||||+|..|.. ...-...-+.+-. -++.+. ++..+++.+
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~-LE~~~~G~I~i~g~~~~~~~-~~~~~R~~v 79 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKK-DILKLRRKV 79 (240)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCHH-HHHHHHHHC
T ss_conf 1673897899989999988899999977-86887864999987225454-699999855
No 368
>PRK12377 putative replication protein; Provisional
Probab=93.84 E-value=0.12 Score=29.91 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=39.9
Q ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 4430002000112234324778653213688899886551023122204877878999999999986118864
Q gi|254780810|r 133 KIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPEC 205 (423)
Q Consensus 133 ~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v 205 (423)
--.|+++....|..+-.+ ..+-...+.| ...+.-..+.||||+|||.|+..|+.........|
T Consensus 70 ~~~f~ny~~~~~~~~~a~--------~~a~~~~~~F--~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sV 132 (248)
T PRK12377 70 KCSFANYQVQNDGQRYAL--------SQAKSIADEL--MTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSV 132 (248)
T ss_pred CCCCCCCCCCCHHHHHHH--------HHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 386345645787899999--------9999999987--31886089989999878899999999999879969
No 369
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=93.84 E-value=0.034 Score=33.57 Aligned_cols=47 Identities=32% Similarity=0.562 Sum_probs=29.9
Q ss_pred HHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 7885124430002000112234324778653213688899886551023122204877878999999999
Q gi|254780810|r 127 PERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 127 ~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
-++..++++|=+.|--|.. +|-| |=|| +|++||||||||-|++-+|=
T Consensus 68 KeEl~EiVdFLK~P~kf~~--------------LGaK-------IPKG--VLLvGPPGTGKTLLAKAvAG 114 (505)
T TIGR01241 68 KEELVEIVDFLKNPSKFTK--------------LGAK-------IPKG--VLLVGPPGTGKTLLAKAVAG 114 (505)
T ss_pred HHHHHHHHHHCCCCHHHHH--------------CCCC-------CCCC--EEEECCCCCCHHHHHHHHHC
T ss_conf 3433313422269637987--------------2788-------9871--47317878424678875202
No 370
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.82 E-value=0.14 Score=29.49 Aligned_cols=54 Identities=24% Similarity=0.242 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf 36888998865510231-2220487787899999999998611886469999508787899
Q gi|254780810|r 160 ISSRVIDLIAPIGKGQR-SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEV 219 (423)
Q Consensus 160 ~~~~~id~~~pig~gqr-~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev 219 (423)
.+....+.+.-+.++.+ .+|.|+.|+||||++..++..+..+ .-++ .| |-+.|.
T Consensus 10 ~~~~~~~~L~~~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~----~riv-ti-Ed~~El 64 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD----ERII-TI-EDTAEL 64 (186)
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCC----CCEE-EE-CCCHHH
T ss_conf 9999999999999859989998999998999999999613345----6459-84-153540
No 371
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.80 E-value=0.028 Score=34.15 Aligned_cols=30 Identities=37% Similarity=0.367 Sum_probs=27.0
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
..+-+|.+.+|+|..|+|||||++.||.-+
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 886079899898789985899999995871
No 372
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.78 E-value=0.37 Score=26.76 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 12220487787899999999998611
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
-.++.||||+||||++.-+|+.+..+
T Consensus 39 hlLf~GppG~GKTt~a~~la~~l~~~ 64 (318)
T PRK00440 39 HLLFAGPPGTGKTTAALALARELYGE 64 (318)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 69888959988999999999997698
No 373
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=93.75 E-value=0.046 Score=32.69 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=25.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..+.+|...+|+|+.|+|||||++.++-
T Consensus 274 l~v~~GEivgivG~nGsGKSTL~k~L~G 301 (501)
T PRK11288 274 FAVRRGEIVGFFGLVGAGRSELMKLLYG 301 (501)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
T ss_conf 7870883999756888648799998438
No 374
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=93.74 E-value=0.06 Score=31.93 Aligned_cols=57 Identities=19% Similarity=0.149 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf 998865510231222048778789999999999861188646999950878789999
Q gi|254780810|r 165 IDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTD 221 (423)
Q Consensus 165 id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e 221 (423)
=|.-+.+-+||=.+|+++-|+||||+|.+||.-+.-+.-.|.+.-+-+-+.|..|+.
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr 75 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75 (245)
T ss_pred HHEEEEECCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 652578506649998768988712379999983258886499840021017187752
No 375
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=93.73 E-value=0.059 Score=32.00 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 2220487787899999999998611
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
.++.||||+|||+++..+|+.....
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~ 26 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLD 26 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 8789899876999999999995998
No 376
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=93.72 E-value=0.53 Score=25.70 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=9.3
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 487787899999999998
Q gi|254780810|r 181 APPRTGKTILLQNIAHSI 198 (423)
Q Consensus 181 ~~~~~gkt~ll~~ia~~~ 198 (423)
||+|+|||+++.-+|+++
T Consensus 44 GP~GtGKts~ArifAkaL 61 (557)
T PRK07270 44 GPRGTGKTSAAKIFAKAM 61 (557)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 899868999999999995
No 377
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=93.70 E-value=0.037 Score=33.34 Aligned_cols=62 Identities=16% Similarity=0.351 Sum_probs=36.1
Q ss_pred ECHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHH
Q ss_conf 163898776200136677767775202466-504687522577777785001211201267655413889
Q gi|254780810|r 268 DSITRLCRAYNVLMPSSGKILTGGVDANAL-QRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFE 336 (423)
Q Consensus 268 DslTR~ArA~~~~~~~~g~~~~gg~~~~~l-~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~ 336 (423)
|====++||-|.+....||..==| +|.-+ +.|+..|-|+ . =|++.+|-.+++|-++ +..|++
T Consensus 160 DQ~EA~TMsDRI~~l~~Gki~Q~~-~PeeiY~~P~~~FvA~-F---iGe~nvf~~~~~e~~~--~~~v~~ 222 (331)
T TIGR01187 160 DQEEALTMSDRIAILRKGKIAQIG-TPEEIYEEPSNLFVAR-F---IGEINVFEATVIERKE--EQLVLA 222 (331)
T ss_pred CHHHHHHHHCEEEEECCCEEEEEC-CCHHHHHCCCCCCCEE-E---CCCEEEEEEEEEEECC--CCEEEC
T ss_conf 848987540202421387588836-8468751777531000-1---0614555678886257--866842
No 378
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.69 E-value=0.041 Score=33.04 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=26.2
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 86551023122204877878999999999
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
-+.|.+|+..+|+||.|+|||||+..|+-
T Consensus 22 sl~v~~Gei~~liGpNGaGKSTLl~~i~G 50 (242)
T TIGR03411 22 SLYVDPGELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 78988998999998999759999999967
No 379
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=93.68 E-value=0.2 Score=28.54 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 888998865510231222048778789999999999861188
Q gi|254780810|r 162 SRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHP 203 (423)
Q Consensus 162 ~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~ 203 (423)
..+++.+. +..|++|.+|.|+|||.++..++.....+..
T Consensus 9 ~~a~~~~~---~~~~~~i~~pTGsGKT~~~~~~i~~~~~~~~ 47 (103)
T pfam04851 9 IEAIRNLL---EKKRGLIVMATGSGKTLTAAKLIARLLKGKK 47 (103)
T ss_pred HHHHHHHH---HCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999---6398699958999879999999999984699
No 380
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.66 E-value=0.54 Score=25.64 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=32.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHH-----HCCCCCEEEEEECCC---CHHHHHHHHHHH
Q ss_conf 3122204877878999999999986-----118864699995087---878999999840
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIK-----KNHPECYLIVLLIDE---RPEEVTDMQRSV 226 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~-----~~~~~v~~i~~ligE---r~~ev~e~~~~~ 226 (423)
+--++.||+|+|||+++..+|+.+. .+|||++.+.. .+. +-+.|++..+.+
T Consensus 27 HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~-~~~~~I~vd~IR~l~~~~ 85 (313)
T PRK05564 27 HASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKP-INKKSIGVDDIRNIIEEV 85 (313)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCCCCHHHHHHHHHHH
T ss_conf 50432799985099999999999828997788986588633-225699989999999998
No 381
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.65 E-value=0.052 Score=32.34 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=28.0
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 655102312220487787899999999998611
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
+.+-+|+-.+|+|+.|+|||||+..|+.-+..+
T Consensus 20 ~~i~~Ge~~~liG~nGsGKTTLl~~i~G~~~~~ 52 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS 52 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 788699799999899988999999995798998
No 382
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.63 E-value=0.073 Score=31.38 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=34.7
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
Q ss_conf 86551023122204877878999999999986118864699995087878999
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVT 220 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~ 220 (423)
-+.+.+|+-.+++||.|+||||++++|+--+..+.-.+.+.-.-+...+.++.
T Consensus 22 sf~v~~Gei~gllGpNGAGKTTl~~~l~Gl~~p~~G~i~i~G~~~~~~~~~~~ 74 (301)
T TIGR03522 22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHH
T ss_conf 67885981999999999819999999967956897779992751344879998
No 383
>PRK13768 GTPase; Provisional
Probab=93.62 E-value=0.12 Score=30.01 Aligned_cols=92 Identities=15% Similarity=0.247 Sum_probs=50.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE--ECCCCHHH-HHHHHHHHCCEEEECCCC-CCHHHHHHHHHHHHHH
Q ss_conf 2220487787899999999998611886469999--50878789-999998403427823667-8888999999999999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL--LIDERPEE-VTDMQRSVQGEVISSTFD-ESAARHVQVAEMVIAK 252 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~--ligEr~~e-v~e~~~~~~~~vv~st~d-~~~~~~~~~a~~a~~~ 252 (423)
..++||||+||||+.+.+..++......+.+|=+ ....=|=+ --|.++.+.-+=|-...+ -|-..-+.+.++..+.
T Consensus 5 ~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIRd~i~~~dVM~~~~LGPNGali~~~e~l~~~ 84 (253)
T PRK13768 5 VFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPAVEYLPYKPDIDVREYVSAREIMRKYGLGPNGALIASVDLLLTK 84 (253)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999769975999789866589999886378617899999881989646899999999998
Q ss_pred HHHHHHC---CCCEEEEEE
Q ss_conf 9999977---992899981
Q gi|254780810|r 253 AKCLVEY---GLDVVILLD 268 (423)
Q Consensus 253 a~~~~e~---G~dVll~~D 268 (423)
...+.++ -.+--+++|
T Consensus 85 ~d~l~~~i~~~~~dY~i~D 103 (253)
T PRK13768 85 AEEIKEEIERLDADYVLVD 103 (253)
T ss_pred HHHHHHHHHHCCCCEEEEE
T ss_conf 9999999851588759982
No 384
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=93.62 E-value=0.047 Score=32.67 Aligned_cols=72 Identities=19% Similarity=0.315 Sum_probs=41.3
Q ss_pred CCCCHHH-HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHH-HHHCCCCCCCCCCCCCCCHHHH--HHCHHHHHC
Q ss_conf 6788889-9999999999999999779928999816389877-6200136677767775202466--504687522
Q gi|254780810|r 235 FDESAAR-HVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCR-AYNVLMPSSGKILTGGVDANAL--QRPKRFFGA 306 (423)
Q Consensus 235 ~d~~~~~-~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~Ar-A~~~~~~~~g~~~~gg~~~~~l--~~~~~~~~~ 306 (423)
.|||... -+......++.-+.+.++|+-|+++.-+|.--++ +-|.+....|+...-|-|.-+| +..++.|+.
T Consensus 162 LDEPTs~LDi~~q~ell~lLr~L~~~G~TVI~vtHDL~lA~~~cDrVivl~~GrIva~GtPeEVlt~e~l~~vy~~ 237 (409)
T PRK09536 162 LDEPTASLDINHQIRTLELVRDLADDGKTVVAAIHDLNLAARYCDELVLLADGRVHDAGRPASVLTPDTLRAAFDA 237 (409)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECCHHHCCHHHHHHHHCC
T ss_conf 9587667999999999999999985899999995689999986999999989989987187597598899998299
No 385
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.61 E-value=0.26 Score=27.78 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=30.9
Q ss_pred HHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 88998865510-23122204877878999999999986118864699
Q gi|254780810|r 163 RVIDLIAPIGK-GQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLI 208 (423)
Q Consensus 163 ~~id~~~pig~-gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i 208 (423)
..-+++.-+-+ +.-.+|.|+.|+||||++..+...+....|.-.++
T Consensus 137 ~~a~~L~~~V~~r~nilI~G~TgsGKTTll~all~~i~~~~p~eRiv 183 (320)
T PRK13894 137 EQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVF 183 (320)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99999999997287589985888656899999986320269520177
No 386
>PRK13544 consensus
Probab=93.59 E-value=0.034 Score=33.52 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=26.8
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 6551023122204877878999999999986
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
+.+-.|+-.+|+||.|+|||||++.|+.-+.
T Consensus 22 ~~i~~Gei~~l~G~NGsGKSTLl~~i~Gl~~ 52 (208)
T PRK13544 22 FTAKQNSLTLVIGNNGSGKTSLLRLLAGLIP 52 (208)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8982994999999999989999999958806
No 387
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.027 Score=34.25 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=27.8
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99886551023122204877878999999999
Q gi|254780810|r 165 IDLIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 165 id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
=|+-..+-+||+..|+|++|+|||||++.++-
T Consensus 338 ~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G 369 (559)
T COG4988 338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLLG 369 (559)
T ss_pred CCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 67106754896799988999978999999847
No 388
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=93.57 E-value=0.092 Score=30.73 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=46.0
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH--------HHHHHHHHCCEEEECCCC-CCHHHHHHHHHHH
Q ss_conf 2048778789999999999861188646999950878789--------999998403427823667-8888999999999
Q gi|254780810|r 179 IVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEE--------VTDMQRSVQGEVISSTFD-ESAARHVQVAEMV 249 (423)
Q Consensus 179 i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~e--------v~e~~~~~~~~vv~st~d-~~~~~~~~~a~~a 249 (423)
++||||+||||+.+.+..+....+..+.+|=+ |--.++ ++|+.... =|-.... -|-..-+.+.++.
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~~~r~~~vvNL--DPA~e~~pY~~~iDIrd~i~~~---dvM~~~~LGPNGali~~me~l 75 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPLRGRSVYVVNL--DPAAENLPYEADIDIRELITVA---DVMEDYGLGPNGALTVAMDFG 75 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCCCCCCCHHHHCCHH---HHHHHCCCCCCHHHHHHHHHH
T ss_conf 98989898899999999999977997599978--9866589998777178746799---999982989738999999999
Q ss_pred HHHHHHHHHC--CCCEEEEEE
Q ss_conf 9999999977--992899981
Q gi|254780810|r 250 IAKAKCLVEY--GLDVVILLD 268 (423)
Q Consensus 250 ~~~a~~~~e~--G~dVll~~D 268 (423)
.+....+.++ ..+..+++|
T Consensus 76 ~~~~d~l~~~l~~~~~y~l~D 96 (234)
T pfam03029 76 RITLDWLLEELEYEDDYYLFD 96 (234)
T ss_pred HHHHHHHHHHHCCCCCEEEEE
T ss_conf 999999999852557769983
No 389
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.54 E-value=0.046 Score=32.70 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=27.2
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 88655102312220487787899999999998
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
.-+.|-+|...+|+|+.|+|||||++.|+.-+
T Consensus 26 vsl~I~~Ge~~~iiG~nGsGKSTLl~~l~Gll 57 (286)
T PRK13641 26 ISFELEDGSFVALIGHTGSGKSTLMQHFNALL 57 (286)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 06798699999999999839999999996598
No 390
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.53 E-value=0.071 Score=31.45 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=27.2
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999861
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
+.+-+|+-.+++|+.|+|||||++.|+--...
T Consensus 21 l~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p 52 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP 52 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 78879939999878997999999999768577
No 391
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.52 E-value=0.055 Score=32.18 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=25.8
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
..+-+|+-.+|+||.|+|||||++.|+--
T Consensus 22 l~i~~Gei~~liGpNGaGKSTLlk~l~Gl 50 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79838979999999998099999999668
No 392
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.51 E-value=0.15 Score=29.38 Aligned_cols=49 Identities=22% Similarity=0.189 Sum_probs=27.8
Q ss_pred HHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHH
Q ss_conf 510231-222048778789999999999861188-6469999508787899
Q gi|254780810|r 171 IGKGQR-SLIVAPPRTGKTILLQNIAHSIKKNHP-ECYLIVLLIDERPEEV 219 (423)
Q Consensus 171 ig~gqr-~~i~~~~~~gkt~ll~~ia~~~~~~~~-~v~~i~~ligEr~~ev 219 (423)
+..++| ..++||+|+||||.+-.+|......+. .-+.++-+=-.|---|
T Consensus 190 ~~~~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~ 240 (282)
T TIGR03499 190 ILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAV 240 (282)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
T ss_conf 445672799977888757889999999999973899679998077767899
No 393
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=93.50 E-value=0.048 Score=32.57 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 220487787899999999998611
Q gi|254780810|r 178 LIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 178 ~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
-|=||||+||||+++++|+...-.
T Consensus 4 ~ISGpPGSGktTvA~~lA~~Lsl~ 27 (173)
T TIGR02173 4 TISGPPGSGKTTVAKILAEKLSLK 27 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 873589686478999999863983
No 394
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=93.49 E-value=0.25 Score=27.91 Aligned_cols=31 Identities=26% Similarity=0.559 Sum_probs=25.0
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 5510231222048778789999999999861
Q gi|254780810|r 170 PIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 170 pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
.++.|+-..|.||.++||||+|+.++-.+.-
T Consensus 17 ~l~~g~~~iItGpN~sGKSt~Lr~i~l~~~~ 47 (162)
T cd03227 17 TFGEGSLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 6089868999899877579999999999998
No 395
>KOG1433 consensus
Probab=93.48 E-value=0.46 Score=26.11 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHH--HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CC-CCHHHHHHHHHHHCCEEE
Q ss_conf 53213688899886--551023122204877878999999999986118864699995-08-787899999984034278
Q gi|254780810|r 156 ENKDISSRVIDLIA--PIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLL-ID-ERPEEVTDMQRSVQGEVI 231 (423)
Q Consensus 156 ~p~~~~~~~id~~~--pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~l-ig-Er~~ev~e~~~~~~~~vv 231 (423)
..+.++.+..|-.. -|+-|+--.|++||++|||-+-...+..+ ..-++.++|+- .. .+++..++..........
T Consensus 91 ~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~--~gge~~~l~IDs~s~~~~~~~~~ia~~~~~~~~ 168 (326)
T KOG1433 91 GFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTC--GGGEGKVLYIDTESTFRLERLTEIAGRSGLRGR 168 (326)
T ss_pred EEECCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCCCEEEEEECCHHCCCCHHHHHHHHHHHHHH
T ss_conf 254155055667742675558356885589844778888998870--687511899952111033211356666303067
Q ss_pred ECCCCCCHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf 2366788889999999---999999999977992899981638
Q gi|254780810|r 232 SSTFDESAARHVQVAE---MVIAKAKCLVEYGLDVVILLDSIT 271 (423)
Q Consensus 232 ~st~d~~~~~~~~~a~---~a~~~a~~~~e~G~dVll~~DslT 271 (423)
. +.+.-...+..-.. ..+..|+-+..+.+.-++++||.|
T Consensus 169 ~-~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~t 210 (326)
T KOG1433 169 D-TLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSAT 210 (326)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 7-88888999998566677779999998620311699941345
No 396
>PRK08006 replicative DNA helicase; Provisional
Probab=93.48 E-value=0.2 Score=28.55 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 32136888998865-51023122204877878999999999986118
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNH 202 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~ 202 (423)
-..||...+|-++. +-+|+=..|-|-|+.|||+++.+||.++..++
T Consensus 206 Gi~TGf~~LD~~t~Gl~~G~LiviaaRPsmGKTalalnia~~~a~~~ 252 (471)
T PRK08006 206 GVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQ 252 (471)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 36688388986416882173899994699876999999999999866
No 397
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.48 E-value=0.18 Score=28.83 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 68889988655102312220487787899999999998611886469999508787899999984034
Q gi|254780810|r 161 SSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQG 228 (423)
Q Consensus 161 ~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~ 228 (423)
....+....|=..++-..+.|++|+|||-|+.-||+........|..+. +.+|.+.++.
T Consensus 144 a~~F~~~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~---------~p~~~~~lK~ 202 (306)
T PRK08939 144 ALDFLEAYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVH---------FPEFIRELKN 202 (306)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE---------HHHHHHHHHH
T ss_conf 9999997376988877889899999899999999999998699299987---------5999999999
No 398
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.48 E-value=0.58 Score=25.43 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=50.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC-EEEEEECCCCHHHHHHHHHHHCCEEE--ECCCCCCHHHHHHHHHHHH
Q ss_conf 23122204877878999999999986118864-69999508787899999984034278--2366788889999999999
Q gi|254780810|r 174 GQRSLIVAPPRTGKTILLQNIAHSIKKNHPEC-YLIVLLIDERPEEVTDMQRSVQGEVI--SSTFDESAARHVQVAEMVI 250 (423)
Q Consensus 174 gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v-~~i~~ligEr~~ev~e~~~~~~~~vv--~st~d~~~~~~~~~a~~a~ 250 (423)
.+--++.||+|+|||+++..+|+++...++.- .. .|+- .....+...-...++ -+.++. -..++| --+
T Consensus 38 aHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dp----Cg~C-~sC~~I~~g~h~DviEIdaasn~-gIDeIR---eLi 108 (613)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC----CNSC-SVCESINTNQSVDIVELDAASNN-GVDEIR---NII 108 (613)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC----CCCC-HHHHHHHCCCCCCEEEEECCCCC-CHHHHH---HHH
T ss_conf 62277558998488999999999966999999998----8888-78999856999986884065557-889999---999
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHH-HHHHCCCCCCCCCCCCCCC
Q ss_conf 999999977992899981638987-7620013667776777520
Q gi|254780810|r 251 AKAKCLVEYGLDVVILLDSITRLC-RAYNVLMPSSGKILTGGVD 293 (423)
Q Consensus 251 ~~a~~~~e~G~dVll~~DslTR~A-rA~~~~~~~~g~~~~gg~~ 293 (423)
+.+.|.--.|+.=++++|..-++. .|+|..---..|||...+|
T Consensus 109 e~~~~~P~~gkyKV~IIDEah~Ln~~AaNALLKtLEEPP~~viF 152 (613)
T PRK05896 109 DNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVF 152 (613)
T ss_pred HHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 97085875799459998162217999999999853489878379
No 399
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.46 E-value=0.052 Score=32.36 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=29.5
Q ss_pred HHHHH-HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 88899-886551023122204877878999999999986
Q gi|254780810|r 162 SRVID-LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 162 ~~~id-~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
++++| .=+.|.+|+..+|+|++|+||||++..|..-+.
T Consensus 20 v~Av~~Vsf~i~~GEilgivGeSGsGKSTl~~~ilgll~ 58 (327)
T PRK11022 20 FKAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (327)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999844187988999999999998789999999974889
No 400
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.44 E-value=0.068 Score=31.57 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=28.7
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88655102312220487787899999999998611
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
.=+.|.+|+-.++.||.|+||||++++|+--+..+
T Consensus 26 vs~~v~~Gei~gllGpNGAGKSTli~~l~Gl~~p~ 60 (306)
T PRK13536 26 LSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD 60 (306)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 17788599699999998980999999996795789
No 401
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=93.44 E-value=0.065 Score=31.71 Aligned_cols=50 Identities=26% Similarity=0.420 Sum_probs=34.2
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE--EEEECCCCHHHHHHHHH
Q ss_conf 102312220487787899999999998611886469--99950878789999998
Q gi|254780810|r 172 GKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYL--IVLLIDERPEEVTDMQR 224 (423)
Q Consensus 172 g~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~--i~~ligEr~~ev~e~~~ 224 (423)
--|.=+-|.|+||+||||||.-+|.-..++ +.. -+++|+=++.+-.+|.+
T Consensus 56 ~~GeLlA~mGsSGAGKTTLmn~La~R~~~g---~~~~g~~v~lNG~~~~~~~~~~ 107 (671)
T TIGR00955 56 KPGELLAIMGSSGAGKTTLMNALAFRSPKG---LKVSGSVVLLNGRPIDAKEMRA 107 (671)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCC---CEECCCEEEECCEECCHHHHHH
T ss_conf 067068984787662689999985337478---6146836787583758689985
No 402
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.44 E-value=0.11 Score=30.10 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=25.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
..+-+|.=.+|++|+|+||||||..|+--.
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 355078189998898868999999985657
No 403
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.43 E-value=0.056 Score=32.12 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 65510231222048778789999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNI 194 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~i 194 (423)
+.|-+|+-..|+|++|+|||||+..+
T Consensus 16 l~i~~G~~~aIiG~sGsGKSTLl~~~ 41 (261)
T cd03271 16 VDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 89889999999879998699999999
No 404
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.43 E-value=0.16 Score=29.16 Aligned_cols=31 Identities=10% Similarity=0.019 Sum_probs=22.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 2220487787899999999998611886469
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYL 207 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~ 207 (423)
.||-|++|+||||+...+..-+.+..+...+
T Consensus 2 IGIaG~sgSGKST~a~~l~~~l~~~~~~~~v 32 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNV 32 (220)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf 8978899877999999999986002699948
No 405
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.43 E-value=0.06 Score=31.94 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=54.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC--HHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
Q ss_conf 65510231222048778789999999999861188646999950878--7899999984034278236678888999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDER--PEEVTDMQRSVQGEVISSTFDESAARHVQVA 246 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr--~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a 246 (423)
+.+.+|+-.+|+|+.|+|||||++.|+--...+.- -|. +-|+. .....+..+. +.-.+ +.-|-.++.+++
T Consensus 21 l~i~~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G---~i~-i~G~~i~~~~~~~~~~~--gi~~v--~qLSgG~~Qrv~ 92 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG---EIL-VDGKEVSFASPRDARRA--GIAMV--YQLSVGERQMVE 92 (163)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC---EEE-ECCEECCCCCHHHHHHC--CCCEE--CCCCHHHHHHHH
T ss_conf 89879989999988998999999999577689857---899-99999999999999987--99489--469989999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHC
Q ss_conf 999999999997799289998163898776200136677767775202466504687522
Q gi|254780810|r 247 EMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGA 306 (423)
Q Consensus 247 ~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ 306 (423)
- ++| ++ +.-+ ++++|- |+.|+||.+-.....+...
T Consensus 93 i---ara--l~-~~p~-llilDE------------------Pt~gLD~~~~~~i~~~l~~ 127 (163)
T cd03216 93 I---ARA--LA-RNAR-LLILDE------------------PTAALTPAEVERLFKVIRR 127 (163)
T ss_pred H---HHH--HH-HCCC-EEEEEC------------------CCCCCCHHHHHHHHHHHHH
T ss_conf 9---999--97-2999-999909------------------7557999999999999999
No 406
>PRK07004 replicative DNA helicase; Provisional
Probab=93.41 E-value=0.18 Score=28.87 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 32136888998865-51023122204877878999999999986118864699
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLI 208 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i 208 (423)
-..||..-+|-++- +-+|+=..|-|-|+.|||+++..||.+++.++...+++
T Consensus 195 Gi~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKTafAlniA~n~A~~~g~~V~~ 247 (460)
T PRK07004 195 GTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAV 247 (460)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 38679388986523898775799973687642699999999998725886699
No 407
>KOG0744 consensus
Probab=93.41 E-value=0.6 Score=25.36 Aligned_cols=90 Identities=27% Similarity=0.312 Sum_probs=53.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHH--CCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 31222048778789999999999861--1886469999508787899999984034278236678888999999999999
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKK--NHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~--~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~ 252 (423)
-=.+.-||||+|||+|-+.+|+.... |..-.+.+.+=|.- ...+.--|.|+-. .++.|.-.+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins-------------hsLFSKWFsESgK---lV~kmF~kI 241 (423)
T KOG0744 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS-------------HSLFSKWFSESGK---LVAKMFQKI 241 (423)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEH-------------HHHHHHHHHHHHH---HHHHHHHHH
T ss_conf 489985799988227999998751465237644406999704-------------6788988712113---899999999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHCC
Q ss_conf 9999977992899981638987762001
Q gi|254780810|r 253 AKCLVEYGLDVVILLDSITRLCRAYNVL 280 (423)
Q Consensus 253 a~~~~e~G~dVll~~DslTR~ArA~~~~ 280 (423)
.|-.-+.|-=|.+++|-+--+|.|-+..
T Consensus 242 ~ELv~d~~~lVfvLIDEVESLa~aR~s~ 269 (423)
T KOG0744 242 QELVEDRGNLVFVLIDEVESLAAARTSA 269 (423)
T ss_pred HHHHHCCCCEEEEEEHHHHHHHHHHHHH
T ss_conf 9997178968999807878889998754
No 408
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=93.40 E-value=0.054 Score=32.22 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=30.0
Q ss_pred HHHHH-HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 88899-8865510231222048778789999999999861
Q gi|254780810|r 162 SRVID-LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 162 ~~~id-~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
++++| .=+.|.+|+-.+|+|.+|+||||++..|..-+..
T Consensus 29 v~av~~Vsf~i~~GEilgivGeSGsGKSTl~~~i~gll~~ 68 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 8986674768889989999868987799999999768888
No 409
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.39 E-value=0.041 Score=33.04 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88655102312220487787899999999998611
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
.-+.|.+|+-.+++||.|+||||++++|+--...+
T Consensus 19 vs~~v~~Gei~gllG~NGaGKTTll~~i~Gl~~p~ 53 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD 53 (210)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 26788799599999899984999999996002668
No 410
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=93.39 E-value=0.6 Score=25.35 Aligned_cols=94 Identities=30% Similarity=0.356 Sum_probs=60.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHH-HH-HCCCCCEEEEEECCCCHHHHHHHH---HHHCCEEEE-CCCCCCHHHHHHHHHHH
Q ss_conf 1222048778789999999999-86-118864699995087878999999---840342782-36678888999999999
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHS-IK-KNHPECYLIVLLIDERPEEVTDMQ---RSVQGEVIS-STFDESAARHVQVAEMV 249 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~-~~-~~~~~v~~i~~ligEr~~ev~e~~---~~~~~~vv~-st~d~~~~~~~~~a~~a 249 (423)
-.+.+|==|+||||....+|.+ .. +++.. .+.+.+==.||--+-... +.+-..|+. --.+++|..-+.+|.-|
T Consensus 104 vilmvGLQGsGKTTt~gKLA~~ll~kk~~~k-vLLva~D~yRPAA~~QL~~Lg~Q~gVpvf~h~~~~~~p~~Pv~ia~~A 182 (439)
T TIGR00959 104 VILMVGLQGSGKTTTAGKLALYLLKKKEGKK-VLLVACDLYRPAAIEQLKVLGEQVGVPVFAHLGKGQSPDDPVEIARQA 182 (439)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCC-EEEEEHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 8997313788578899999999999863897-034032103478999999976752887110047888988778999999
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 9999999977992899981638987
Q gi|254780810|r 250 IAKAKCLVEYGLDVVILLDSITRLC 274 (423)
Q Consensus 250 ~~~a~~~~e~G~dVll~~DslTR~A 274 (423)
+..|+ +.|.|||| +|.==|+.
T Consensus 183 l~~Ak---~~~~D~vI-~DTAGRL~ 203 (439)
T TIGR00959 183 LEEAK---ENGFDVVI-VDTAGRLQ 203 (439)
T ss_pred HHHHH---HCCCCEEE-EECCCCHH
T ss_conf 99999---74897899-72675125
No 411
>KOG0743 consensus
Probab=93.38 E-value=0.072 Score=31.41 Aligned_cols=33 Identities=27% Similarity=0.554 Sum_probs=25.1
Q ss_pred HHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 65510231--2220487787899999999998611
Q gi|254780810|r 169 APIGKGQR--SLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 169 ~pig~gqr--~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
.-+|+--| -|.+||||+|||+++..||+...-+
T Consensus 228 krvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~yd 262 (457)
T KOG0743 228 KRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYD 262 (457)
T ss_pred HHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 86484500041204799998889999997205873
No 412
>PRK08506 replicative DNA helicase; Provisional
Probab=93.37 E-value=0.18 Score=28.77 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 32136888998865-51023122204877878999999999986118864
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPEC 205 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v 205 (423)
-..||.+-+|-++. +.+|+=..|-|-|+.|||+++..||.++..+...|
T Consensus 175 Gi~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKTAfAlniA~~~a~~~~~V 224 (473)
T PRK08506 175 GLDTGFKQLNKMTKGFNKGDLIIIAARPSMGKTTLVLNMVLKALNQGKGV 224 (473)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 47788087888726998562799950799867899999999999659965
No 413
>PRK04195 replication factor C large subunit; Provisional
Probab=93.37 E-value=0.15 Score=29.40 Aligned_cols=38 Identities=34% Similarity=0.513 Sum_probs=28.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHH
Q ss_conf 2220487787899999999998611886469999-508787899
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEV 219 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev 219 (423)
.++.||||+||||++.-+|+....+ ++-+ .-|+|..++
T Consensus 43 lLL~GPpGvGKTT~a~~lAk~~g~~-----viElNASD~R~~~~ 81 (403)
T PRK04195 43 LLLYGPPGVGKTSLAHALANDYGWE-----VIELNASDQRTKDV 81 (403)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-----EEEECCCCCCCHHH
T ss_conf 9988939987999999999984998-----59977101147899
No 414
>PRK13764 ATPase; Provisional
Probab=93.36 E-value=0.11 Score=30.32 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 20001122343247786532136888998865510231-22204877878999999999986118864699995087878
Q gi|254780810|r 139 LTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQR-SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPE 217 (423)
Q Consensus 139 l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr-~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ 217 (423)
.|..+|--++.++- -+++-+.++ -+-..++ .+|-|+||+||||+++.+|.....+++-|+ .=|.||
T Consensus 231 ITaVRPv~~~sled-----Y~l~~~l~~---Rl~~~a~GilIaG~PGaGKsTfaqalA~~~~~~g~iVK-----TmEsPR 297 (605)
T PRK13764 231 ITAVRPIVKLSLED-----YNLSEKLKE---RLEERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVK-----TMESPR 297 (605)
T ss_pred EEEEEEEEECCHHH-----CCCCHHHHH---HHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE-----ECCCCC
T ss_conf 99971017804777-----167899999---88733664999779999778999999999984797898-----324862
Q ss_pred H
Q ss_conf 9
Q gi|254780810|r 218 E 218 (423)
Q Consensus 218 e 218 (423)
.
T Consensus 298 D 298 (605)
T PRK13764 298 D 298 (605)
T ss_pred C
T ss_conf 3
No 415
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.36 E-value=0.034 Score=33.60 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 8899886551023122204877878999999999
Q gi|254780810|r 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 163 ~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
-+-|.-+-|-+|++.|.+|+-|+||||+++|+.-
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTG 72 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTG 72 (325)
T ss_pred HHHEEEEECCCCCEEEEECCCCCCCHHHHHHHHC
T ss_conf 6551145348986898875888860333989738
No 416
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.35 E-value=0.059 Score=31.99 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88655102312220487787899999999998611
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
.-+.|-+|+-.+++||.|+||||+++.|+--+..+
T Consensus 40 vsf~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~ 74 (236)
T cd03267 40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT 74 (236)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 05788489599999999830999999996494887
No 417
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.33 E-value=0.12 Score=29.95 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=36.2
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
Q ss_conf 886551023122204877878999999999986118864699995087878999
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVT 220 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~ 220 (423)
.+.-+-.|-+.++.|+||+|||++...+|+....+ ...|-+--+=.|.+++
T Consensus 36 ~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~---~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 36 ALLALLAGGHVLLEGPPGVGKTLLARALARALGLP---FVRIQCTPDLLPSDLL 86 (329)
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCC---CEEEECCCCCCHHHHC
T ss_conf 99999859977877989877799999999983898---1899568998888820
No 418
>PRK06904 replicative DNA helicase; Validated
Probab=93.30 E-value=0.18 Score=28.73 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 32136888998865-51023122204877878999999999986118864699
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLI 208 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i 208 (423)
-..||.+.+|-++. +-+|+=..|-|-|+.|||+++..||.++...+...+++
T Consensus 203 Gi~TG~~~LD~~t~Gl~~g~LiViAaRPsmGKTa~alnia~n~A~~~~~~V~~ 255 (472)
T PRK06904 203 GVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLV 255 (472)
T ss_pred EECCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 32289799974415887575799973798756899999999999955995799
No 419
>PRK05636 replicative DNA helicase; Provisional
Probab=93.30 E-value=0.21 Score=28.35 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
Q ss_conf 532136888998865-51023122204877878999999999986118864699995087878999
Q gi|254780810|r 156 ENKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVT 220 (423)
Q Consensus 156 ~p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~ 220 (423)
.-..||..-+|-++- +-+|+=..|-|-|+.|||+++.+||.++..++...++++ ..-=-.+++.
T Consensus 248 ~Gi~TGf~~LD~~t~Gl~~G~LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~f-SLEMs~~ql~ 312 (507)
T PRK05636 248 TGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTIALDFMRSASIKNNKASVIF-SLEMSKSEIV 312 (507)
T ss_pred EEEECCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHH
T ss_conf 2565880889975508883567999737878668999999999998769937997-1569989999
No 420
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.26 E-value=0.057 Score=32.07 Aligned_cols=56 Identities=27% Similarity=0.480 Sum_probs=37.8
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCH----HHHHHHHHHH
Q ss_conf 988655102312220487787899999999998611886469999508787----8999999840
Q gi|254780810|r 166 DLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERP----EEVTDMQRSV 226 (423)
Q Consensus 166 d~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~----~ev~e~~~~~ 226 (423)
|.-..|.+|++.+|++++|+|||||++.++ ++..... -.+ .++..+ ..+.++.+.+
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~-GLl~p~~--G~v--~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLN-GLLKPTS--GEV--LVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHC-CCCCCCC--CEE--EECCCCCCCHHHHHHHHCCE
T ss_conf 533898789899998899988999999953-7676889--848--87781331002188763121
No 421
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=93.23 E-value=0.063 Score=31.80 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=26.3
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 886551023122204877878999999999
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
.-+.+.+|...+|+|+.|+|||||++.|+-
T Consensus 281 vsf~v~~GEi~gi~G~nGsGKsTLl~~L~G 310 (513)
T PRK13549 281 VSFSLRRGEILGIAGLVGAGRTELVQCLFG 310 (513)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 357886884899747988658999999838
No 422
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.24 Score=27.99 Aligned_cols=97 Identities=25% Similarity=0.374 Sum_probs=56.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 12220487787899999999998611886469999-50878789999998403427823667888899999999999999
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAK 254 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~ 254 (423)
-.+.+||.|+|||-|++.+|+-++.-+.-+.+--+ =-|=-||.|....-.+ .++|..-.++|+
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkL----------------lqaadydV~rAe 162 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKL----------------LQAADYDVERAE 162 (408)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHCCCCCHHHHHHHHHH----------------HHHCCCCHHHHH
T ss_conf 1799888997577999999998489847514441210663550089999999----------------987645888882
Q ss_pred HHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCC-CCCHHHH
Q ss_conf 999779928999816389877620013667776777-5202466
Q gi|254780810|r 255 CLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTG-GVDANAL 297 (423)
Q Consensus 255 ~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~g-g~~~~~l 297 (423)
+ =.+++|-|.+.||--- .|+-.|-.|| |+..+.|
T Consensus 163 r-------GIIyIDEIDKIarkSe--n~SITRDVSGEGVQQALL 197 (408)
T COG1219 163 R-------GIIYIDEIDKIARKSE--NPSITRDVSGEGVQQALL 197 (408)
T ss_pred C-------CEEEEECHHHHHCCCC--CCCCCCCCCCHHHHHHHH
T ss_conf 8-------8599851025420578--987234367358999999
No 423
>PRK04040 adenylate kinase; Provisional
Probab=93.22 E-value=0.45 Score=26.18 Aligned_cols=82 Identities=16% Similarity=0.243 Sum_probs=45.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCC----CCHHHHHHHHHHH
Q ss_conf 231222048778789999999999861188646999950878789999998403427823667----8888999999999
Q gi|254780810|r 174 GQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFD----ESAARHVQVAEMV 249 (423)
Q Consensus 174 gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d----~~~~~~~~~a~~a 249 (423)
+-.+.|+|-||+||||++..+..-...++. ++ --|.. ..|. -+..-.+.+-| =|+..|...-.
T Consensus 2 ~k~VvvtGiPGvGKTTv~~~~~~~l~~~~~----~v-n~G~~---M~e~---A~~~glv~~RDemRkL~~~~q~~lQ~-- 68 (189)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYK----IV-NFGDV---MLEV---AKEEGLVEHRDEMRKLPLEEQKELQR-- 68 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCE----EE-EHHHH---HHHH---HHHCCCCCCHHHHCCCCHHHHHHHHH--
T ss_conf 418999758988789999999997235875----98-67799---9999---99817734778874799999999999--
Q ss_pred HHHHHHHHHCCCCEEEEEEC
Q ss_conf 99999999779928999816
Q gi|254780810|r 250 IAKAKCLVEYGLDVVILLDS 269 (423)
Q Consensus 250 ~~~a~~~~e~G~dVll~~Ds 269 (423)
..|++..+.+.+=.+++|+
T Consensus 69 -~Aa~~I~~~~~~~~ViIDT 87 (189)
T PRK04040 69 -EAAERIAEMAGEGPVIVDT 87 (189)
T ss_pred -HHHHHHHHHCCCCCEEEEC
T ss_conf -9999999835787289944
No 424
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.18 E-value=0.039 Score=33.18 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=27.9
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 865510231222048778789999999999861
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
=+.+.+|...+|+|+.|+||||+++.|+-....
T Consensus 20 sl~v~~GEi~~liG~nGaGKSTll~~l~G~~~p 52 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred EEEECCCCEEEEECCCCCCCCHHHHHHCCCCCC
T ss_conf 789859969999888999926377876698678
No 425
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.17 E-value=0.047 Score=32.61 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=32.4
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf 65510231222048778789999999999861188646999950878789999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTD 221 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e 221 (423)
+.|.+| -.+++||.|+|||||++.|+--+..+.-++.+--.-+.+.+.++..
T Consensus 21 ~~i~~G-i~gllGpNGAGKSTll~~i~Gl~~p~sG~i~i~g~~~~~~~~~~~~ 72 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred EEECCC-EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHHH
T ss_conf 688897-5999999982399999999759668962999999996618898973
No 426
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.16 E-value=0.25 Score=27.86 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8889988655102312220487787899999999998611886469999
Q gi|254780810|r 162 SRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL 210 (423)
Q Consensus 162 ~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ 210 (423)
.+.+.-..+ ++--..+.|+||+|||.|+.-|++.+.+.. ..+.++
T Consensus 95 ~~~~~~~~~--~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g--~sv~f~ 139 (254)
T COG1484 95 LASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELLKAG--ISVLFI 139 (254)
T ss_pred HHHHHHHHC--CCCCEEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEE
T ss_conf 999998732--588289989999879999999999999839--849998
No 427
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.15 E-value=0.29 Score=27.48 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 2220487787899999999998611
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
++++||||+|||.+++.+|.....+
T Consensus 262 vLL~GpPG~GKtl~AKAvA~e~~~p 286 (491)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANEWNLP 286 (491)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9997999987899999998663894
No 428
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=93.15 E-value=0.13 Score=29.70 Aligned_cols=96 Identities=17% Similarity=0.237 Sum_probs=50.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECC------------CCCCHHHHH
Q ss_conf 12220487787899999999998611886469999508787899999984034278236------------678888999
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISST------------FDESAARHV 243 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st------------~d~~~~~~~ 243 (423)
-..|+||+|+|||||+..++....+-.. ..+++ + -+.+...-|.+...|+-...- -++.+..+.
T Consensus 438 hT~I~G~tGaGKTvLl~~lla~~~k~~~-~~iv~--f-Dk~~g~~~~~~a~gG~y~~l~~~~~~~~NPf~~l~~t~~n~~ 513 (796)
T COG3451 438 HTLIIGPTGAGKTVLLSFLLAQALKYGN-PQIVA--F-DKDNGAYIFIEALGGEYLDLEPGVPSGFNPFEILEDTDENRE 513 (796)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEE--E-CCCCCHHHHHHHHCCEEECCCCCCCCCCCCHHHCCCCHHHHH
T ss_conf 7499889888789999999999987459-81899--8-489735778887498875356787746084110378656689
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCC
Q ss_conf 9999999999999977992899981638987762001
Q gi|254780810|r 244 QVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVL 280 (423)
Q Consensus 244 ~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~ 280 (423)
.+++-.....+. ..+.+.-+..-...+|++..
T Consensus 514 fl~~~~~~ll~~-----~~~~~~~~~~~~i~~~~~~~ 545 (796)
T COG3451 514 FLAEWLVKLLAH-----EGISLSPAEERAISAAINNL 545 (796)
T ss_pred HHHHHHHHHHHC-----CCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999632-----67666567888999999875
No 429
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.12 E-value=0.073 Score=31.38 Aligned_cols=29 Identities=28% Similarity=0.221 Sum_probs=26.3
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 86551023122204877878999999999
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
-+.+.+|.+.+|+|+-|+||||||+.||-
T Consensus 44 SFeV~kGE~vGIIG~NGAGKSTLLKiIaG 72 (549)
T PRK13545 44 SFEVPEGEIVGIVGLNGSGKSTLSNLIAG 72 (549)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 57864898999988999989999999968
No 430
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.11 E-value=0.18 Score=28.81 Aligned_cols=12 Identities=25% Similarity=0.327 Sum_probs=4.8
Q ss_pred HCCCCEEEECCC
Q ss_conf 102312220487
Q gi|254780810|r 172 GKGQRSLIVAPP 183 (423)
Q Consensus 172 g~gqr~~i~~~~ 183 (423)
|.+....+||++
T Consensus 232 ~~~~~l~vVGD~ 243 (672)
T PRK10919 232 GSRARFTVVGDD 243 (672)
T ss_pred CCCCCEEEECCC
T ss_conf 799847773796
No 431
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.11 E-value=0.4 Score=26.53 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=31.8
Q ss_pred HHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 88998865510-231222048778789999999999861188646999
Q gi|254780810|r 163 RVIDLIAPIGK-GQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIV 209 (423)
Q Consensus 163 ~~id~~~pig~-gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~ 209 (423)
...+.+.-.-+ +.-.+|.|+.|+||||++..+...+....|+-.+++
T Consensus 132 ~~~~~L~~aV~~r~nilVsGgTGSGKTTllnaL~~~i~~~~p~eRivt 179 (323)
T PRK13833 132 AQASTIRSAISSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVI 179 (323)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEE
T ss_conf 999999999981896899917777568999999986402893233999
No 432
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.11 E-value=0.058 Score=32.02 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=28.5
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 988655102312220487787899999999998
Q gi|254780810|r 166 DLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 166 d~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
|.=+.+-+|+-.+|+|+.|+|||||++.|+.-.
T Consensus 18 disl~i~~G~i~~i~G~NGsGKSTLlk~i~Gl~ 50 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777787799799999999981999999996798
No 433
>PRK06749 replicative DNA helicase; Provisional
Probab=93.08 E-value=0.22 Score=28.24 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 32136888998865-51023122204877878999999999986118864
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPEC 205 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v 205 (423)
-..||.+.+|-++. +.+|+=..|-|-|+.|||+++.+||.++..++..|
T Consensus 168 Gi~TGf~~LD~lt~Gl~~g~LiviaaRPsmGKTa~alnia~~~a~~g~~v 217 (428)
T PRK06749 168 GIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAV 217 (428)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 68778388987524999886899962798976899999999999649927
No 434
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=93.05 E-value=0.08 Score=31.12 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=35.9
Q ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 443000200011223432477865321368889988655102312220487787899999999998
Q gi|254780810|r 133 KIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 133 ~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
...|.+-.=.||.++ ...-.+-++ ..|-.||...|||++|+||||+.+.|-|.-
T Consensus 382 ~Ief~nV~F~YPsRp----------d~~VL~~~s--l~i~~G~t~AlVG~SGsGKSTii~LL~RfY 435 (1467)
T PTZ00265 382 KIEFKNVRFHYDTRK----------DVEIYKDLN--FTLKEGKTYAFVGESGCGKSTILKLIERLY 435 (1467)
T ss_pred CEEEEEEEEECCCCC----------CCEECCCCE--EEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 189987798689999----------883006833--886389779986688875667999996326
No 435
>PRK08840 replicative DNA helicase; Provisional
Probab=93.05 E-value=0.22 Score=28.24 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 32136888998865-51023122204877878999999999986118864699995087878
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPE 217 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ 217 (423)
-..||.+.+|-++. +-+|+=..|-|-|+.|||+++.+||.++..+....++++ --|=+.
T Consensus 199 Gi~TG~~~LD~~~~Gl~~G~LiviaaRPsmGKTalalnia~n~a~~~~~~v~~f--SlEMs~ 258 (464)
T PRK08840 199 GVSTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIF--SLEMPA 258 (464)
T ss_pred CCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE--CCCCCH
T ss_conf 688898999875369875767999837987368999999999999659967997--677998
No 436
>KOG0060 consensus
Probab=93.04 E-value=0.031 Score=33.84 Aligned_cols=51 Identities=31% Similarity=0.493 Sum_probs=37.0
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 24430002000112234324778653213688899-886551023122204877878999999999
Q gi|254780810|r 132 NKIHFDNLTPLYPDKRFNMELNNPENKDISSRVID-LIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 132 ~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id-~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
....|++.+..-|+. |...|+ +-.-+-.||-.+|.||+|+|||.|+..++-
T Consensus 432 n~i~~e~v~l~tPt~--------------g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlgg 483 (659)
T KOG0060 432 NAIEFEEVSLSTPTN--------------GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGG 483 (659)
T ss_pred CEEEEEEEEECCCCC--------------CCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 458963101108999--------------8656321005705897599978998763689999853
No 437
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.01 E-value=0.69 Score=24.98 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 222048778789999999999861
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
-++-||+|+|||+++..+|+.+..
T Consensus 48 ~Lf~GP~GiGKaTlA~~~A~~Ll~ 71 (352)
T PRK09112 48 LLFEGPEGIGKATLAFHLANHILS 71 (352)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 653589980899999999999866
No 438
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.00 E-value=0.059 Score=31.99 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=27.7
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 886551023122204877878999999999986
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
.-+.+.+|+-.+|+||.|+|||||++.|+.-..
T Consensus 19 vs~~v~~Gei~~liGpNGaGKSTL~~~i~Gl~~ 51 (230)
T TIGR03410 19 VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 177999997999999999409999999977999
No 439
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.00 E-value=0.072 Score=31.43 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=8.9
Q ss_pred EECCCCHHHHHHHHHHH
Q ss_conf 95087878999999840
Q gi|254780810|r 210 LLIDERPEEVTDMQRSV 226 (423)
Q Consensus 210 ~ligEr~~ev~e~~~~~ 226 (423)
++|--|-.|+.++...+
T Consensus 189 i~i~h~l~~i~~~~drv 205 (490)
T PRK10938 189 VLVLNRFDEIPDFVQFA 205 (490)
T ss_pred EEEECCHHHHHHHHHHH
T ss_conf 99954599999997799
No 440
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.92 E-value=0.078 Score=31.18 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=25.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..|.+|+-.+|+|+.|+|||||++.|+-
T Consensus 21 l~i~~Gei~gliG~nGaGKSTL~~~i~G 48 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 9988998999998999739999999967
No 441
>PRK06321 replicative DNA helicase; Provisional
Probab=92.91 E-value=0.27 Score=27.65 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 32136888998865-510231222048778789999999999861188646999
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIV 209 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~ 209 (423)
-..||.+-+|-++. +-+|+=..|-|-|+.|||+++.+||.++..++...++++
T Consensus 208 GipTGf~~LD~lt~Gl~~GdliviaaRPsmGKTalalnia~~~a~~~~~~v~~f 261 (472)
T PRK06321 208 GIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIF 261 (472)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 225684889998559886757998538999779999999999998569946997
No 442
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=92.89 E-value=0.33 Score=27.05 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHC--CEEE-ECCCCCCHHHHHHHHHHHHHHHHHHH----HCCCCEEEEEECHHHHH
Q ss_conf 78789999998403--4278-23667888899999999999999999----77992899981638987
Q gi|254780810|r 214 ERPEEVTDMQRSVQ--GEVI-SSTFDESAARHVQVAEMVIAKAKCLV----EYGLDVVILLDSITRLC 274 (423)
Q Consensus 214 Er~~ev~e~~~~~~--~~vv-~st~d~~~~~~~~~a~~a~~~a~~~~----e~G~dVll~~DslTR~A 274 (423)
..+--++|+.+..+ +.++ ....|+....+-.++-+.--....+. +..+.|.+++|-+..+.
T Consensus 216 ~~~FSird~i~~~~~~~~Lfi~~~~d~~~~l~pLisl~l~~~~~~ll~~~~~~~~rv~~~lDE~~~l~ 283 (410)
T cd01127 216 KEPFSIRDWVRDEDPPGFLFITSNADMRASLRPLISTWLDVAVNTLLGLPENRERRLWFFIDELPSLH 283 (410)
T ss_pred CCCCCHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHCCC
T ss_conf 89971899972888871899972775688999999999999999985388767860799988700037
No 443
>CHL00181 cbbX CbbX; Provisional
Probab=92.85 E-value=0.37 Score=26.72 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=23.0
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 6551023122204877878999999999986
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
.|...+--..+.|+||+||||.+..+|+-..
T Consensus 54 ~~~~~s~h~vF~GnPGTGKTTVARl~a~il~ 84 (287)
T CHL00181 54 VSSSPGLHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9888765388878998679999999999999
No 444
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=92.83 E-value=0.069 Score=31.56 Aligned_cols=156 Identities=21% Similarity=0.359 Sum_probs=78.5
Q ss_pred CCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 46888763000222255688788512443000200011223432477865321368889988655102312220487787
Q gi|254780810|r 107 PREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTG 186 (423)
Q Consensus 107 ~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~g 186 (423)
+..|+..+ -..|+.|...||.++. .-.|+-|.+ .+ + +.-+.|-.|.-.+|+||||+|
T Consensus 312 m~LP~P~G-~L~vE~v~~~PP~~~~------WsqPivPk~--~l------------~--gi~F~~~aGe~laIIGPSgSG 368 (556)
T TIGR01842 312 MALPEPEG-HLSVENVTIVPPGGKK------WSQPIVPKP--TL------------R--GISFAIQAGEALAIIGPSGSG 368 (556)
T ss_pred CCCCCCCC-EEEEEEEEEECCCCCC------CCCCCCCHH--HH------------C--CCCEEECCCCEEEEECCCCCC
T ss_conf 57889863-6888776510786313------578977614--22------------7--862156377458887478652
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC----------EEE-------ECCCCCCHH-HH-HHHHH
Q ss_conf 899999999998611886469999508787899999984034----------278-------236678888-99-99999
Q gi|254780810|r 187 KTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQG----------EVI-------SSTFDESAA-RH-VQVAE 247 (423)
Q Consensus 187 kt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~----------~vv-------~st~d~~~~-~~-~~~a~ 247 (423)
||||++.|.=.....+=.|-+ | +-+...|-++.-| |.+ .+=|+|.+. .. +.||.
T Consensus 369 KStLaR~~vG~W~~~~G~VRL-----D--Gadl~qWD~e~lG~~iGYLPQdvELF~GTva~NIARF~en~d~~~iieAAk 441 (556)
T TIGR01842 369 KSTLARILVGIWPPASGSVRL-----D--GADLKQWDRETLGKHIGYLPQDVELFSGTVAENIARFGENADPEKIIEAAK 441 (556)
T ss_pred HHHHHHHHHHCCCCCCCCEEE-----E--HHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 588987887210135653364-----0--334402375365880154798505076767640244688788789999997
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCC
Q ss_conf 9999999999779928999816389877620013667776777520246650468752257
Q gi|254780810|r 248 MVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAAR 308 (423)
Q Consensus 248 ~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar 308 (423)
+| |-|=| |-||=.-|-....+.|.++|||==.. .-..+-|||.++
T Consensus 442 lA----------GvHEl-----Il~lP~GYDT~iG~~G~~LSGGQRQR-IaLARAlyG~P~ 486 (556)
T TIGR01842 442 LA----------GVHEL-----ILRLPDGYDTDIGEGGATLSGGQRQR-IALARALYGDPK 486 (556)
T ss_pred HH----------CHHHH-----HHCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCE
T ss_conf 60----------30357-----51696885443137777786146899-999998717983
No 445
>PRK13409 putative ATPase RIL; Provisional
Probab=92.82 E-value=0.091 Score=30.76 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=23.9
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 10231222048778789999999999861
Q gi|254780810|r 172 GKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 172 g~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
-.||+.||+|+-|+||||+++.++--+.-
T Consensus 97 ~~G~v~GLiG~NGaGKST~lkILsG~l~P 125 (590)
T PRK13409 97 KEGKVTGILGPNGIGKSTAVKILSGELIP 125 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 99878998899999899999999587148
No 446
>KOG0062 consensus
Probab=92.81 E-value=0.055 Score=32.20 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=27.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999861
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
..+-+|.|-|++|+-|+||||||.+||++-..
T Consensus 101 L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~ 132 (582)
T KOG0062 101 LTLSRGRRYGLVGRNGIGKSTLLRAIANGQVS 132 (582)
T ss_pred EEEECCCCCCEECCCCCCHHHHHHHHHHCCCC
T ss_conf 55631524321478987589999999845867
No 447
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=92.79 E-value=0.19 Score=28.68 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=45.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCH---HH----------HHHHHHHHCCEEEECCCCCCHHHHH
Q ss_conf 2220487787899999999998611886469999508787---89----------9999984034278236678888999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERP---EE----------VTDMQRSVQGEVISSTFDESAARHV 243 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~---~e----------v~e~~~~~~~~vv~st~d~~~~~~~ 243 (423)
..++||+|+||++|+..+.. .+|+...+++..--|| -| -.+|.+.+...-+. +... +
T Consensus 4 ivl~GPSG~GK~tl~~~L~~----~~~~~~~~~vs~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~~~Fl----E~~~--~ 73 (182)
T pfam00625 4 IVLSGPSGVGKSHIKKALLD----EYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFL----EHAE--F 73 (182)
T ss_pred EEEECCCCCCHHHHHHHHHH----HCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHH----HHHH--H
T ss_conf 99989899999999999998----486673445765547999878789657996589999987543777----6264--0
Q ss_pred HHHHHHHHH--HHHHHHCCCCEEEEEECHHHHHHHHHC
Q ss_conf 999999999--999997799289998163898776200
Q gi|254780810|r 244 QVAEMVIAK--AKCLVEYGLDVVILLDSITRLCRAYNV 279 (423)
Q Consensus 244 ~~a~~a~~~--a~~~~e~G~dVll~~DslTR~ArA~~~ 279 (423)
..-++++.. -+...++|++|++-+| ..-++..+.
T Consensus 74 ~g~~YGt~~~~I~~~~~~g~~vvl~id--~~g~~~lk~ 109 (182)
T pfam00625 74 NGNYYGTSKEAIEQIAESGKICILDVD--IQGVKQLRK 109 (182)
T ss_pred CCCCEEECHHHHHHHHHCCCEEEEEEC--HHHHHHHHH
T ss_conf 797256402777999867996999972--899999987
No 448
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=92.78 E-value=0.077 Score=31.24 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=32.4
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 655102312220487787899999999998611886469999508787899999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDM 222 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~ 222 (423)
..|-.|+=..+.||+|+||||||..|| +.++. |.=.|. +-| +.+|.+
T Consensus 21 l~v~~G~lvaLLGPSGSGKsTLLR~iA-GLe~p--d~G~I~-~~G---~D~t~~ 67 (241)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRVIA-GLEQP--DSGRII-LNG---RDATRV 67 (241)
T ss_pred EEECCCEEEEEECCCCCCHHHHHHHHH-CCCCC--CCCEEE-EEE---CCCCCC
T ss_conf 574385279854689873789999983-57999--842699-852---002213
No 449
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=92.73 E-value=0.084 Score=30.97 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=25.3
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
+-+.+|...+|+|+.|+|||||++.|+-
T Consensus 269 f~v~~GEivgl~G~nGsGKsTL~~~l~G 296 (491)
T PRK10982 269 FDLHKGEILGIAGLVGAKRTDIVETLFG 296 (491)
T ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 9996896899778999978899999819
No 450
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=92.69 E-value=0.084 Score=30.98 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=25.8
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
..+.+|...+|+|+.|+|||||++.|+-
T Consensus 273 ~~v~~GEi~gi~G~nGsGKsTL~~~l~G 300 (501)
T PRK10762 273 FTLRKGEILGVSGLMGAGRTELMKVLYG 300 (501)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 4766881899667888768899999818
No 451
>PTZ00301 uridine kinase; Provisional
Probab=92.66 E-value=0.24 Score=27.93 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=21.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 22204877878999999999986118
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNH 202 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~ 202 (423)
.||-||+|+||||+...|+..+....
T Consensus 6 IgIaGgSgSGKTT~a~~i~~~l~~~~ 31 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 99968876789999999999987614
No 452
>KOG0736 consensus
Probab=92.64 E-value=0.074 Score=31.32 Aligned_cols=45 Identities=31% Similarity=0.494 Sum_probs=30.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-----CCCCEEEEEECCCCHHHHHHHH
Q ss_conf 2220487787899999999998611-----8864699995087878999999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKN-----HPECYLIVLLIDERPEEVTDMQ 223 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~-----~~~v~~i~~ligEr~~ev~e~~ 223 (423)
.+..||||+|||-+++.+|..+.-| .|+...+| |||--+.|++.-
T Consensus 708 ILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMY--VGqSE~NVR~VF 757 (953)
T KOG0736 708 ILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMY--VGQSEENVREVF 757 (953)
T ss_pred EEEECCCCCCHHHHHHHHHHHCEEEEEEECCHHHHHHH--HCCHHHHHHHHH
T ss_conf 58877999855799999875430367850588998877--430188899999
No 453
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.63 E-value=0.054 Score=32.23 Aligned_cols=33 Identities=36% Similarity=0.491 Sum_probs=27.5
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 886551023122204877878999999999986
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
.-+.|-+|.-.+|+||-|+||||||+.|++-..
T Consensus 21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~~~l~ 53 (258)
T COG1120 21 LSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 368865997999989988899999999865678
No 454
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=92.62 E-value=0.093 Score=30.70 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=38.8
Q ss_pred HHHHHHH-HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC----CHHHHHHHHHHHC
Q ss_conf 8889988-6551023122204877878999999999986118864699995087----8789999998403
Q gi|254780810|r 162 SRVIDLI-APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE----RPEEVTDMQRSVQ 227 (423)
Q Consensus 162 ~~~id~~-~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE----r~~ev~e~~~~~~ 227 (423)
++++|.+ +-+-+|...+|+|.+|+||||++..|+.-... +.-.++ +.|. .+.+...+.+.++
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P---~~G~i~-~~g~~~~~~~~~~~~~r~~~Q 370 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP---SSGSII-FDGQDLDLTGGELRRLRRRIQ 370 (539)
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC---CCCEEE-EECCCCCCCCCHHHHHHHHEE
T ss_conf 0123012457638878999889999989999999487788---884499-927655655231455242037
No 455
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=92.62 E-value=0.11 Score=30.30 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=28.5
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88655102312220487787899999999998611
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
.-+.+-+|+-.+++||.|+||||++++|.--+..+
T Consensus 24 vs~~V~~Gei~gllGpNGAGKTTli~~l~Gl~~p~ 58 (304)
T PRK13537 24 LSFHVQPGECFGLLGPNGAGKTTTLKMLLGLTHPD 58 (304)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 17788699599999998972999999997795689
No 456
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=92.61 E-value=0.099 Score=30.51 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 22204877878999999999986
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIK 199 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~ 199 (423)
+++.||||+|||++++.+|..+.
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~ 24 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALS 24 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCC
T ss_conf 89998997569999999999807
No 457
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.59 E-value=0.76 Score=24.67 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=9.3
Q ss_pred ECCCCCCHHHHHHHHHHHHHH
Q ss_conf 048778789999999999861
Q gi|254780810|r 180 VAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 180 ~~~~~~gkt~ll~~ia~~~~~ 200 (423)
-|++|+|||++..-+|++++.
T Consensus 44 ~G~rGvGKTt~ari~Ak~lnc 64 (721)
T PRK12323 44 TGTRGVGKTTLSRILAKSLNC 64 (721)
T ss_pred ECCCCCCHHHHHHHHHHHHCC
T ss_conf 279988898999999999768
No 458
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=92.57 E-value=0.082 Score=31.06 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=26.3
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
+.+.+|.-.+|+|++|+||||+++.+..-+
T Consensus 24 l~v~~Ge~~aiiG~SGsGKStl~k~llgll 53 (254)
T PRK10418 24 LTLQRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 289899999999999878999999995799
No 459
>PRK13695 putative NTPase; Provisional
Probab=92.56 E-value=0.21 Score=28.36 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=23.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 312220487787899999999998611
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
-|.+|-|+||+|||||+..++..+...
T Consensus 4 ~kI~iTG~PGvGKTTli~Kv~~~L~~~ 30 (174)
T PRK13695 4 LRIGITGMPGVGKTTLVLKIAELLARE 30 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 299987899988999999999998636
No 460
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=92.55 E-value=0.054 Score=32.26 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=33.2
Q ss_pred HHHHH-HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH--HHCCC
Q ss_conf 68889-988655102312220487787899999999998--61188
Q gi|254780810|r 161 SSRVI-DLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI--KKNHP 203 (423)
Q Consensus 161 ~~~~i-d~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~--~~~~~ 203 (423)
|-.++ |.-..|-++++..|||.||.|||||++-+.+-= ++.|-
T Consensus 486 g~~~L~di~L~I~~n~k~tiVGmSGSGKsTLaKLLV~FfePQ~~sG 531 (710)
T TIGR01193 486 GSNVLSDISLTIKKNEKITIVGMSGSGKSTLAKLLVGFFEPQAESG 531 (710)
T ss_pred CCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 8732026423650785489973679748999987520358998877
No 461
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=92.52 E-value=0.24 Score=28.00 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=24.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 12220487787899999999998611886
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKNHPE 204 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~ 204 (423)
|.+|+|+..+|||||+..+++......-.
T Consensus 2 ~v~i~G~~~sGKttl~~~L~~~~~~~g~~ 30 (122)
T pfam03205 2 IVLVVGPKDSGKTTLIRKLLNYLKRRGYR 30 (122)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 79999489998999999999999987994
No 462
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=92.51 E-value=0.093 Score=30.68 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=27.3
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999861
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
..+.+|+-.++.||.|+||||++++|+--+..
T Consensus 26 ~~i~~Gei~gllG~NGAGKTTllk~l~Gl~~p 57 (293)
T COG1131 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 99828959999899999899999999679778
No 463
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=92.50 E-value=0.1 Score=30.42 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=52.0
Q ss_pred CCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH-------
Q ss_conf 8878851244300020001122343247786532136888998865510231222048778789999999999-------
Q gi|254780810|r 125 DVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHS------- 197 (423)
Q Consensus 125 ~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~------- 197 (423)
..|+...-.+.|.+-.=-||.+.-. | =.=|+.++|-=|.-..+|||+|.||||++..+-+.
T Consensus 522 ~~P~~~~G~ieF~dVsFsYP~RP~~-------p-----vLk~LtFt~~PG~vvALVGPsGsGKStvaaLL~n~Y~Pt~G~ 589 (770)
T TIGR00958 522 LAPKNLEGKIEFQDVSFSYPNRPDV-------P-----VLKGLTFTLEPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 589 (770)
T ss_pred CCCCCCEEEEEEEEEEECCCCCCCC-------C-----CCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 1457632258875322317898897-------6-----112774365386259986589983999999998557898656
Q ss_pred --------HHHCCCCCEEEEEECCCCH
Q ss_conf --------8611886469999508787
Q gi|254780810|r 198 --------IKKNHPECYLIVLLIDERP 216 (423)
Q Consensus 198 --------~~~~~~~v~~i~~ligEr~ 216 (423)
.+-||.-.|-=|++|||.|
T Consensus 590 vLlDg~Pl~~y~H~YLH~~V~~VgQEP 616 (770)
T TIGR00958 590 VLLDGVPLSQYDHHYLHRQVALVGQEP 616 (770)
T ss_pred EEECCCCHHHHCCEECCCEEEEEECCC
T ss_conf 877684613326501000254332054
No 464
>PRK06851 hypothetical protein; Provisional
Probab=92.49 E-value=0.2 Score=28.52 Aligned_cols=50 Identities=24% Similarity=0.406 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCCEE-EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 899886551023122-204877878999999999986118864699995087
Q gi|254780810|r 164 VIDLIAPIGKGQRSL-IVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE 214 (423)
Q Consensus 164 ~id~~~pig~gqr~~-i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE 214 (423)
..|-+.+ +..+|.- |=||||+|||++|+.|+.......-+|..+.+..|.
T Consensus 21 ~~~~i~~-~~~~ri~ilKGGpGtGKStlmK~ig~~~~~~GydVE~~hcssD~ 71 (368)
T PRK06851 21 LYDSILP-GDANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 71 (368)
T ss_pred HHHHHCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 8875425-65127999968999778999999999999689837999758998
No 465
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=92.48 E-value=0.19 Score=28.60 Aligned_cols=57 Identities=21% Similarity=0.408 Sum_probs=37.8
Q ss_pred HHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE------------EECCCC--HHHHHHHHHHHC
Q ss_conf 510231--222048778789999999999861188646999------------950878--789999998403
Q gi|254780810|r 171 IGKGQR--SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIV------------LLIDER--PEEVTDMQRSVQ 227 (423)
Q Consensus 171 ig~gqr--~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~------------~ligEr--~~ev~e~~~~~~ 227 (423)
+..--| +|+.||-|+||||-|-.++.+|+++++..++-+ +||-|| |+-=.+|..-+|
T Consensus 122 ~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTIEDPIEyvh~~~~sli~QREvG~DT~sF~~ALr 194 (350)
T TIGR01420 122 LAERPRGLILVTGPTGSGKSTTLASMIDYINKNKAGHIITIEDPIEYVHKNKRSLINQREVGLDTLSFANALR 194 (350)
T ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 9836699389876889867899999997874038888256317731410477024543624675457999976
No 466
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=92.47 E-value=0.093 Score=30.70 Aligned_cols=10 Identities=0% Similarity=0.248 Sum_probs=3.5
Q ss_pred HCCCCCCCCC
Q ss_conf 4799974053
Q gi|254780810|r 354 DKRIFPAMDI 363 (423)
Q Consensus 354 ~~~~~PAId~ 363 (423)
.+..+..|.+
T Consensus 465 ~~~~~~~i~v 474 (648)
T PRK10535 465 GQSWLNSITV 474 (648)
T ss_pred CCCCCEEEEE
T ss_conf 7775217999
No 467
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=92.47 E-value=0.11 Score=30.31 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=20.9
Q ss_pred HHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 51023122204877878999999999
Q gi|254780810|r 171 IGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 171 ig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
|-.| -..|+||+|+|||||++.|+.
T Consensus 20 ip~G-itaIvGpsGsGKSTLl~~i~~ 44 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred CCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 3898-289999999988999999998
No 468
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.46 E-value=0.092 Score=30.70 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=35.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC----CHHH-HHHHHHHHCCEEEEC
Q ss_conf 6551023122204877878999999999986118864699995087----8789-999998403427823
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE----RPEE-VTDMQRSVQGEVISS 233 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE----r~~e-v~e~~~~~~~~vv~s 233 (423)
.-+-+|++..|++++|+|||||+.-+| +.+. |+.--+. |.|+ -.|+ ...|....-+-|+-|
T Consensus 31 L~v~~Ge~vaivG~SGSGKSTLl~vlA-GLd~--~ssGeV~-l~G~~L~~ldEd~rA~~R~~~vGfVFQS 96 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLA-GLDD--PSSGEVR-LLGQPLHKLDEDARAALRARHVGFVFQS 96 (228)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHH-CCCC--CCCCEEE-ECCCCHHCCCHHHHHHHHCCCEEEEEEE
T ss_conf 786278658887788875776999995-6778--9985489-8475010069788987634633599875
No 469
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=92.46 E-value=0.14 Score=29.46 Aligned_cols=107 Identities=14% Similarity=0.197 Sum_probs=55.5
Q ss_pred CEEEEEECHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCC----CCCCCHHHH
Q ss_conf 28999816389877620013667776777-5202466504687522577777785001211201267----655413889
Q gi|254780810|r 262 DVVILLDSITRLCRAYNVLMPSSGKILTG-GVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTG----SRMDEVIFE 336 (423)
Q Consensus 262 dVll~~DslTR~ArA~~~~~~~~g~~~~g-g~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg----~~~d~~i~~ 336 (423)
+=.+++|-|-+.|.... ++|.-.|+ |+.-. ..+.+.|..-+.. .|.+-.-.--.+-.| +..+|.|++
T Consensus 249 ~GIVFIDEIDKIa~~~~----~~g~DVS~EGVQrd---LLpivEGt~V~tK-~G~V~TdhILFIasGAFh~sKPSDLIPE 320 (442)
T PRK05201 249 NGIVFIDEIDKIAKRGE----GSGPDVSREGVQRD---LLPLVEGSTVSTK-YGMVKTDHILFIASGAFHVAKPSDLIPE 320 (442)
T ss_pred CCCEEECHHHHHHCCCC----CCCCCCCCHHHHHH---HHHHHCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCCHHHHH
T ss_conf 17045114656530357----88989773307888---7887538855567-7760255034550450014782022498
Q ss_pred HHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCC-CHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 885226607898087884799974053354221-015519999999999999996126
Q gi|254780810|r 337 EFKGTGNSEIVLERKIADKRIFPAMDIIKSGTR-KEDLLVERQDLQKVFMLRRIVSSM 393 (423)
Q Consensus 337 ~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR-~~~~l~~~~~~~~~~~~r~~l~~~ 393 (423)
=+|.||-+--+.+.|. -.-.++++.....+.+...++...
T Consensus 321 -----------------l~GRlPv~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~e 361 (442)
T PRK05201 321 -----------------LQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATE 361 (442)
T ss_pred -----------------HCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf -----------------71755058882449999999996786157899999998624
No 470
>KOG0066 consensus
Probab=92.46 E-value=0.11 Score=30.29 Aligned_cols=46 Identities=28% Similarity=0.351 Sum_probs=34.4
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 9988655102312220487787899999999998611886469999
Q gi|254780810|r 165 IDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL 210 (423)
Q Consensus 165 id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ 210 (423)
+++-..|..|.|-++++|-|-||||||..||.-.-+--|.+.+.+|
T Consensus 281 vnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlC 326 (807)
T KOG0066 281 VNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLC 326 (807)
T ss_pred ECCCEEEEECCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 4152689823130006789876377999987521168998736865
No 471
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.44 E-value=0.055 Score=32.18 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=36.5
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH--HHHHHHHH
Q ss_conf 8865510231222048778789999999999861188646999950878789--99999840
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEE--VTDMQRSV 226 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~e--v~e~~~~~ 226 (423)
.-..|-.|-=..++||||+||||+|+||-+-+.... = -+..-||.-++ ..++++.+
T Consensus 20 v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~---G-~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 20 VNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---G-EILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred EEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCC---C-EEEECCEECCCCCHHHHHHHH
T ss_conf 257765972899987899757879999960558888---5-389899044658889998753
No 472
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.44 E-value=0.22 Score=28.20 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=24.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 3122204877878999999999986118
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKNH 202 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~ 202 (423)
-|..|-++||+||||+++.|+..+..++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 5999867998458999999999998559
No 473
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.37 E-value=0.49 Score=25.96 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=50.7
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC-CHHHHHHHHHHH----------------CCEE
Q ss_conf 86551023122204877878999999999986118864699995087-878999999840----------------3427
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE-RPEEVTDMQRSV----------------QGEV 230 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE-r~~ev~e~~~~~----------------~~~v 230 (423)
-++|.+|.-.-+.+|+|+|||||+.-++-....++. +.--+ .++| |-..+---.|.+ ...+
T Consensus 22 n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~-~~G~~-~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~ 99 (213)
T COG4136 22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS-CTGEL-WLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLL 99 (213)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC-EEEEE-EECCEECCCCCHHHHHEEEEECCCCCCCCCCCCCCEE
T ss_conf 478637847998778886578899999862066762-45689-8887200436132432213542550144423121447
Q ss_pred EECCCCCCHHHHHHHHHHHHHH
Q ss_conf 8236678888999999999999
Q gi|254780810|r 231 ISSTFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 231 v~st~d~~~~~~~~~a~~a~~~ 252 (423)
++-..+---..|.+.++.|+++
T Consensus 100 fAlp~~~KG~aRr~~a~aAL~~ 121 (213)
T COG4136 100 FALPATLKGNARRNAANAALER 121 (213)
T ss_pred EECCCCCCCHHHHHHHHHHHHH
T ss_conf 8537121427777668888888
No 474
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=92.35 E-value=0.84 Score=24.41 Aligned_cols=90 Identities=23% Similarity=0.208 Sum_probs=51.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH-HC-CEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 312220487787899999999998611886469999508787899999984-03-4278236678888999999999999
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRS-VQ-GEVISSTFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~-~~-~~vv~st~d~~~~~~~~~a~~a~~~ 252 (423)
-+.++-+|+|+|||+|+-.+.+.....++ +.++-.|--..|=.++.+. .- ..+.+.|.+.- | .=|.+..+.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~---~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~C---H-~da~m~~~a 86 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYK---IAVITGDIYTKEDADRLRKLPGEPIIGVETGKGC---H-LDASMNLEA 86 (202)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCC---EEEEECEEECHHHHHHHHHCCCCEEEEECCCCCC---C-CCHHHHHHH
T ss_conf 89996179986789999999999975277---6899640400655999973779806874038765---8-867889999
Q ss_pred HHHHHHCCCC-EEEEEECHH
Q ss_conf 9999977992-899981638
Q gi|254780810|r 253 AKCLVEYGLD-VVILLDSIT 271 (423)
Q Consensus 253 a~~~~e~G~d-Vll~~DslT 271 (423)
.+.+.+.+.+ =+|++-|.-
T Consensus 87 i~~l~~~~~~~Dll~iEs~G 106 (202)
T COG0378 87 IEELVLDFPDLDLLFIESVG 106 (202)
T ss_pred HHHHHHCCCCCCEEEEECCC
T ss_conf 99986317767789992376
No 475
>KOG0651 consensus
Probab=92.34 E-value=0.28 Score=27.57 Aligned_cols=142 Identities=22% Similarity=0.295 Sum_probs=68.9
Q ss_pred CCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCC-CC--CCCCCCC
Q ss_conf 66556046010000122125987999886246888763000222255688788512443000200011-22--3432477
Q gi|254780810|r 77 AGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYP-DK--RFNMELN 153 (423)
Q Consensus 77 ~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p-~~--~i~le~~ 153 (423)
++|.=+|.-...+.+.+|+.|..|.-......... ++-..|+ .-..-..+.+.-..|+++--.+- .+ +=..+.+
T Consensus 75 ~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~--~lprevd-~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielp 151 (388)
T KOG0651 75 SGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMR--GLPREVD-LVYNMSHEDPRNISFENVGGLFYQIRELREVIELP 151 (388)
T ss_pred CCCCEEEECCCCCCHHHHCCCCEEEEEEEEEEHHC--CCCHHHH-HHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHEEEE
T ss_conf 89807987255434555116741366534322230--5644778-88775415755467877178388889988655740
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE---EEEECCCCHHHHHHHHHHHC
Q ss_conf 865321368889988655102312220487787899999999998611886469---99950878789999998403
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYL---IVLLIDERPEEVTDMQRSVQ 227 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~---i~~ligEr~~ev~e~~~~~~ 227 (423)
...|. +..| +..-.|.| .||.||||+|||-+..-+|..+..|.--+.. +---|||-+|=++|+.+.-+
T Consensus 152 l~np~-lf~r-vgIk~Pkg----~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~ 222 (388)
T KOG0651 152 LTNPE-LFLR-VGIKPPKG----LLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAR 222 (388)
T ss_pred CCCCH-HCCC-CCCCCCCE----EEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 24810-0234-57778825----687679998645999999986598547744766633002657889999997786
No 476
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=92.33 E-value=0.21 Score=28.34 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=36.8
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 889988655102312220487787899999999998611886469999
Q gi|254780810|r 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL 210 (423)
Q Consensus 163 ~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ 210 (423)
=..++|.| +-.=++|.|.-|+|||||+-.|=+++-.++||=+++-.
T Consensus 140 DLf~alLP--~~GLGLiCG~TGSGKSTl~AaiY~~~l~t~pdRKivT~ 185 (374)
T TIGR02525 140 DLFEALLP--KAGLGLICGETGSGKSTLAAAIYRHCLETYPDRKIVTY 185 (374)
T ss_pred HHHHHHCC--CCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 89987050--03780221778972899999999985074889707986
No 477
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.31 E-value=0.85 Score=24.38 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=48.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCC---EEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 3122204877878999999999986118864---6999950878789999998403427823667888899999999999
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKNHPEC---YLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIA 251 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v---~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~ 251 (423)
+--+..||+|+|||+++.-+|+++...++.. -|-.|. + ...++..-.-+-+.++.. ..+++ .-++
T Consensus 41 HAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~-----~---~~~~s~DViEIDAASn~g-VDdIR---eLie 108 (718)
T PRK07133 41 HAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCI-----E---NFNNNLDIIEMDAASNNG-VDEIR---ELRE 108 (718)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH-----H---CCCCCCCEEEECCCCCCC-HHHHH---HHHH
T ss_conf 0586238998688999999999967999999999770214-----3---047898737754556688-89999---9999
Q ss_pred HHHHHHHCCCCEEEEEECHHHHH-HHHHCCCCCCCCCC
Q ss_conf 99999977992899981638987-76200136677767
Q gi|254780810|r 252 KAKCLVEYGLDVVILLDSITRLC-RAYNVLMPSSGKIL 288 (423)
Q Consensus 252 ~a~~~~e~G~dVll~~DslTR~A-rA~~~~~~~~g~~~ 288 (423)
.+.|.--+|+-=+.++|-.-++. .|+|..---..|||
T Consensus 109 ~v~y~P~~gkYKVyIIDEvHMLS~~AfNALLKtLEEPP 146 (718)
T PRK07133 109 NVKNLPQISKYKIYIIDEVHMLSKSAFNALLKTLEEPP 146 (718)
T ss_pred HHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 82558877872499996620079999999998502798
No 478
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=92.30 E-value=0.13 Score=29.75 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=28.2
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8998865510231222048778789999999999
Q gi|254780810|r 164 VIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 164 ~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
-+|.+...-+|+...++|++|+|||+|+..+.-.
T Consensus 25 g~~~L~~~l~~k~sv~~G~SGVGKSTLiN~L~~~ 58 (161)
T pfam03193 25 GIEELKPLLKGKTSVLAGQSGVGKSTLLNALLPE 58 (161)
T ss_pred CHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 9999999867985999889998899999885634
No 479
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.30 E-value=0.11 Score=30.21 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=24.0
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
.-|--|+.....||+|+||||||..||-
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 5506886899977898767889999857
No 480
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.29 E-value=0.11 Score=30.29 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=27.6
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 865510231222048778789999999999861
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
-+.+-+|+-.+++||.|+|||||+..|+--...
T Consensus 20 s~~v~~Gei~gllG~NGaGKSTLl~~i~Gl~~p 52 (208)
T cd03268 20 SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP 52 (208)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 668869819999999999999999999578378
No 481
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=92.29 E-value=0.11 Score=30.28 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=38.0
Q ss_pred HCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1244300020001122343247786532136888998865510231222048778789999999999
Q gi|254780810|r 131 RNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHS 197 (423)
Q Consensus 131 ~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~ 197 (423)
.-...|.+.+=.||+-. .|+ -|.=+..--||..-|+||.|+|||||..-+-|-
T Consensus 332 ~G~v~F~~i~f~FaNs~------------QGV--~dvSF~~KAG~TvAIVGPTGAGKTTLiNLLQRV 384 (592)
T TIGR01192 332 KGAVEFRDITFEFANSS------------QGV--FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV 384 (592)
T ss_pred EEEEEEEEEEECCCCCC------------CCC--EEEEEEEECCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 26788875310478766------------883--000366524756898778997178998877531
No 482
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=92.27 E-value=0.1 Score=30.48 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 2220487787899999999998611
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
=|..||+|||||++++=+|++++..
T Consensus 39 YLF~GpRGtGKTS~ARIfAKaLNC~ 63 (363)
T TIGR02397 39 YLFSGPRGTGKTSIARIFAKALNCQ 63 (363)
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf 4502859976355899999986588
No 483
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.27 E-value=0.86 Score=24.34 Aligned_cols=91 Identities=30% Similarity=0.394 Sum_probs=55.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH---HHHHCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 312220487787899999999998611886469999508787899999---98403427823667888899999999999
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDM---QRSVQGEVISSTFDESAARHVQVAEMVIA 251 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~---~~~~~~~vv~st~d~~~~~~~~~a~~a~~ 251 (423)
+-.+.+|=-|+||||....+|++....+..+ ++++.==-||--+-.. .+.+...++.+.....|.. +|.-+++
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kv-llVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~---Iak~al~ 176 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKV-LLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVE---IAKAALE 176 (451)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHH---HHHHHHH
T ss_conf 5899981567974868999999999749945-89850567868999999999860985316778899799---9999999
Q ss_pred HHHHHHHCCCCEEEEEECHHHH
Q ss_conf 9999997799289998163898
Q gi|254780810|r 252 KAKCLVEYGLDVVILLDSITRL 273 (423)
Q Consensus 252 ~a~~~~e~G~dVll~~DslTR~ 273 (423)
.|+ +.+.||+| +|.=-|+
T Consensus 177 ~ak---~~~~DvvI-vDTAGRl 194 (451)
T COG0541 177 KAK---EEGYDVVI-VDTAGRL 194 (451)
T ss_pred HHH---HCCCCEEE-EECCCCC
T ss_conf 999---74998899-9688733
No 484
>KOG0733 consensus
Probab=92.19 E-value=0.67 Score=25.03 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=52.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---CCEEEEEECCCCHHHHHHHHHHHC----CEEEECCCCC------CH---H
Q ss_conf 222048778789999999999861188---646999950878789999998403----4278236678------88---8
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHP---ECYLIVLLIDERPEEVTDMQRSVQ----GEVISSTFDE------SA---A 240 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~---~v~~i~~ligEr~~ev~e~~~~~~----~~vv~st~d~------~~---~ 240 (423)
.++-||||+|||.|+..||......+- .-.+|-..-||--+.++|.-+.-+ ..|+.---|. .+ .
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreM 305 (802)
T KOG0733 226 VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREM 305 (802)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf 16448998647899999752128854851414653155752289999999987366975998511001364404578899
Q ss_pred HHHHHHHHHHHHHHHHHH--CCCCEEEEE
Q ss_conf 999999999999999997--799289998
Q gi|254780810|r 241 RHVQVAEMVIAKAKCLVE--YGLDVVILL 267 (423)
Q Consensus 241 ~~~~~a~~a~~~a~~~~e--~G~dVll~~ 267 (423)
.|..+|.+.+..-+--.+ .|+.||++-
T Consensus 306 ErRiVaQLlt~mD~l~~~~~~g~~VlVIg 334 (802)
T KOG0733 306 ERRIVAQLLTSMDELSNEKTKGDPVLVIG 334 (802)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEE
T ss_conf 99999999985100256666899769982
No 485
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.19 E-value=0.08 Score=31.12 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=34.9
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf 88655102312220487787899999999998611886469999508787899
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEV 219 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev 219 (423)
.-+.|-+|+-.+++||.|+||||+++.|+--+..+.-.+.+--.-+...+.++
T Consensus 24 vs~~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p~~G~i~i~G~d~~~~~~~~ 76 (218)
T cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEA 76 (218)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHH
T ss_conf 27898598299999999984999999997797789748999999988697989
No 486
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.17 E-value=0.056 Score=32.12 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=27.6
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88655102312220487787899999999998611
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
.-..+..|.|.|++|.-|+||||||+.|+--...+
T Consensus 22 ~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~ 56 (530)
T COG0488 22 VSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD 56 (530)
T ss_pred CCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 84076899889998999898899999982997788
No 487
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=92.15 E-value=0.19 Score=28.67 Aligned_cols=39 Identities=36% Similarity=0.681 Sum_probs=28.5
Q ss_pred HHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8998865510--231222048778789999999999861188
Q gi|254780810|r 164 VIDLIAPIGK--GQRSLIVAPPRTGKTILLQNIAHSIKKNHP 203 (423)
Q Consensus 164 ~id~~~pig~--gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~ 203 (423)
++|+ .--|| |+-.++.||||+|||.|+.-||+.+-.+.|
T Consensus 39 iv~m-Ik~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~vP 79 (395)
T pfam06068 39 IVEM-IKEGKIAGRAVLIAGPPGTGKTALAIAISKELGEDTP 79 (395)
T ss_pred HHHH-HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9999-9727757738998779998889999999997487997
No 488
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=92.15 E-value=0.22 Score=28.26 Aligned_cols=35 Identities=26% Similarity=0.512 Sum_probs=25.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 312220487787899999999998611886469999
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL 210 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ 210 (423)
.-.+|+||.|+|||||+..++... ..++...+++.
T Consensus 442 GHtlI~GpTGsGKTvll~~l~~q~-~ry~~~~vf~F 476 (815)
T PRK13873 442 GHTLVVGPTGAGKSVLLALMALQF-RRYPGSQVFAF 476 (815)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH-HHCCCCCEEEE
T ss_conf 643897889998999999999998-64489848999
No 489
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.11 E-value=0.2 Score=28.50 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=34.6
Q ss_pred HHCC-CCEEEECCCCCCHHHHHHHHHHHHHH---------------------CCCCCEEEEEECCC--CHHHHHHHHHHH
Q ss_conf 5102-31222048778789999999999861---------------------18864699995087--878999999840
Q gi|254780810|r 171 IGKG-QRSLIVAPPRTGKTILLQNIAHSIKK---------------------NHPECYLIVLLIDE--RPEEVTDMQRSV 226 (423)
Q Consensus 171 ig~g-qr~~i~~~~~~gkt~ll~~ia~~~~~---------------------~~~~v~~i~~ligE--r~~ev~e~~~~~ 226 (423)
-|+- +--++.||+|+||++++..+|+.+.. +|||++.+.- -|. +-+.|++..+.+
T Consensus 24 ~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p-~~~~i~idqiR~L~~~~ 102 (329)
T PRK08058 24 KNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHPDVHLVAP-DGQSIKKDQIRYLKEEF 102 (329)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECC-CCCCCCHHHHHHHHHHH
T ss_conf 59966156557899988999999999997399999999887888999987699997677456-61407799999999996
No 490
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=92.10 E-value=0.74 Score=24.77 Aligned_cols=91 Identities=16% Similarity=0.270 Sum_probs=44.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCH---HH----------HHHHHHHHCCEEEECCCCCCHHHHH
Q ss_conf 2220487787899999999998611886469999508787---89----------9999984034278236678888999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERP---EE----------VTDMQRSVQGEVISSTFDESAARHV 243 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~---~e----------v~e~~~~~~~~vv~st~d~~~~~~~ 243 (423)
..++||+|+||++|...+.. .+|+....++..=-|+ -| -.+|.+.+..--+. +-. .+
T Consensus 5 iil~Gpsg~GK~tl~~~l~~----~~~~~~~~~v~~TTR~~r~gE~~G~dY~Fvs~~~F~~~i~~~~fl----E~~--~~ 74 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQ----EIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFL----EWG--EY 74 (184)
T ss_pred EEEECCCCCCHHHHHHHHHH----HCCCCEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHCCHHH----HHH--HH
T ss_conf 99999999999999999986----396450577876727998899999636997179999998727417----888--74
Q ss_pred HHHHHHHHHH--HHHHHCCCCEEEEEECHHHHHHHHHC
Q ss_conf 9999999999--99997799289998163898776200
Q gi|254780810|r 244 QVAEMVIAKA--KCLVEYGLDVVILLDSITRLCRAYNV 279 (423)
Q Consensus 244 ~~a~~a~~~a--~~~~e~G~dVll~~DslTR~ArA~~~ 279 (423)
..-+.++.+. +...++|++|++-+| ..-+...+.
T Consensus 75 ~g~~YGt~~~~I~~~~~~g~~~ildi~--~~g~~~l~~ 110 (184)
T smart00072 75 SGNYYGTSKETIRQVAEQGKHCLLDID--PQGVKQLRK 110 (184)
T ss_pred CCCCCCCHHHHHHHHHCCCCEEEEEEC--HHHHHHHHH
T ss_conf 787754106789998726986999962--999999998
No 491
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.06 E-value=0.14 Score=29.60 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 12220487787899999999998
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
|..++||||+||+|....||+.-
T Consensus 1 ri~l~G~PGsGKgTqa~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98998999998799999999997
No 492
>COG0645 Predicted kinase [General function prediction only]
Probab=92.01 E-value=0.69 Score=24.96 Aligned_cols=74 Identities=26% Similarity=0.331 Sum_probs=44.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEEC----CCCCCHHHHHHHHHHHHHH
Q ss_conf 222048778789999999999861188646999950878789999998403427823----6678888999999999999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISS----TFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~s----t~d~~~~~~~~~a~~a~~~ 252 (423)
+++++.||+||||+...++.-.-+ +.+ |.-++..- +.+ +-.- .-..++.+..++=.+..-.
T Consensus 4 ~l~~Gl~GsGKstlA~~l~~~lgA-------~~l----rsD~irk~---L~g-~p~~~r~~~g~ys~~~~~~vy~~l~~~ 68 (170)
T COG0645 4 VLVGGLPGSGKSTLARGLAELLGA-------IRL----RSDVIRKR---LFG-VPEETRGPAGLYSPAATAAVYDELLGR 68 (170)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC-------EEE----EHHHHHHH---HCC-CCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 997258886586887898853486-------687----41789987---238-861014887887678899999999988
Q ss_pred HHHHHHCCCCEEE
Q ss_conf 9999977992899
Q gi|254780810|r 253 AKCLVEYGLDVVI 265 (423)
Q Consensus 253 a~~~~e~G~dVll 265 (423)
|+.....|.+|++
T Consensus 69 A~l~l~~G~~VVl 81 (170)
T COG0645 69 AELLLSSGHSVVL 81 (170)
T ss_pred HHHHHHCCCCEEE
T ss_conf 9999967991898
No 493
>PRK07773 replicative DNA helicase; Validated
Probab=91.98 E-value=0.47 Score=26.04 Aligned_cols=53 Identities=23% Similarity=0.247 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 32136888998865-510231222048778789999999999861188646999
Q gi|254780810|r 157 NKDISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIV 209 (423)
Q Consensus 157 p~~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~ 209 (423)
-..||..-+|.++- +-+|+=.-|-|-|+.|||++..+||+++..++...++++
T Consensus 185 GvpTG~~~ld~~~~g~~~~~l~i~a~rp~~GKt~~~~~~a~~~a~~~~~~v~~F 238 (868)
T PRK07773 185 GVPTGFYDLDEMTNGLHPGQMIIVAARPGVGKSTLGLDFARSCSIRHRLASVIF 238 (868)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 868897999876318887767999828977777899999999998659965897
No 494
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=91.95 E-value=0.18 Score=28.88 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=22.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 22204877878999999999986118
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNH 202 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~ 202 (423)
.+|-||+|+||||+.+.|+..+..+.
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~~~ 27 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFVSIFGREG 27 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 89989985719999999999966058
No 495
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=91.92 E-value=0.32 Score=27.19 Aligned_cols=26 Identities=35% Similarity=0.654 Sum_probs=22.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 12220487787899999999998611
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
+.+|-|+||+|||||+..++..+...
T Consensus 1 ki~ITG~pGvGKTTli~kv~~~l~~~ 26 (168)
T pfam03266 1 RIFITGPPGVGKTTLVKKVIELLKSE 26 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 98997899988999999999999867
No 496
>pfam08206 OB_RNB Ribonuclease B OB domain. This family includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.
Probab=91.90 E-value=0.43 Score=26.33 Aligned_cols=47 Identities=36% Similarity=0.598 Sum_probs=34.8
Q ss_pred EEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 998540477026750454866665560460100001221259879998862468
Q gi|254780810|r 56 GVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPRE 109 (423)
Q Consensus 56 GvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~ 109 (423)
|.+.+.++||||+.... ..+|+|+++.+.. +.-.||.|...+...+.
T Consensus 1 G~~~~~~~GfGFv~~d~-----~~~DifI~~~~l~--~A~~GD~V~v~v~~~~~ 47 (58)
T pfam08206 1 GTVRGHKKGFGFLIPDD-----EEDDIFIPPEQMK--KAMHGDRVLVRITKGDR 47 (58)
T ss_pred CEEEECCCCEEEEEECC-----CCCCEEECHHHHC--CCCCCCEEEEEEECCCC
T ss_conf 98989389009998689-----9889999989974--56599999999953888
No 497
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.87 E-value=0.32 Score=27.12 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=28.6
Q ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECCCCHHHH
Q ss_conf 51023122204877878999999999986118-86469999508787899
Q gi|254780810|r 171 IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNH-PECYLIVLLIDERPEEV 219 (423)
Q Consensus 171 ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~-~~v~~i~~ligEr~~ev 219 (423)
+.+|....++||.|+||||.+-.+|....-.| +.-+.++-+=--|---|
T Consensus 173 ~~~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAv 222 (404)
T PRK06995 173 MERGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGH 222 (404)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf 11475589866888763758999999999983898379997687547899
No 498
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.85 E-value=0.25 Score=27.90 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 222048778789999999999861
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
.+|.|++|+||||+.+.|+.....
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~~ 25 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGN 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 898899988599999999998099
No 499
>PRK11054 helD DNA helicase IV; Provisional
Probab=91.84 E-value=0.34 Score=27.01 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=39.9
Q ss_pred HHCCCCEEEECCCCCCHHHHHHH-HHHHHHHCC--CCCEEEEEECCCCHHHHHHHHHHHCC--EEEECCCCCCH
Q ss_conf 51023122204877878999999-999986118--86469999508787899999984034--27823667888
Q gi|254780810|r 171 IGKGQRSLIVAPPRTGKTILLQN-IAHSIKKNH--PECYLIVLLIDERPEEVTDMQRSVQG--EVISSTFDESA 239 (423)
Q Consensus 171 ig~gqr~~i~~~~~~gkt~ll~~-ia~~~~~~~--~~v~~i~~ligEr~~ev~e~~~~~~~--~vv~st~d~~~ 239 (423)
|--....+|+||||+|||..|.. ||.-+.... |+-++++.-...-.+|+++-.+...+ .|-++||-.-+
T Consensus 206 i~~ed~~LVLAGAGSGKT~vLt~RiayLI~~g~~~P~~ILaLTFT~kAA~EMreRl~~~lg~~~v~~~TFHSla 279 (684)
T PRK11054 206 VNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRKAAEEMDERIRERLGTEDITARTFHALA 279 (684)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
T ss_conf 74799648983389970779999999999759998667786863499999999999975499983786599999
No 500
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.84 E-value=0.12 Score=30.01 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=36.3
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHHH
Q ss_conf 88655102312220487787899999999998611886469999---5087878999999840
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL---LIDERPEEVTDMQRSV 226 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~---ligEr~~ev~e~~~~~ 226 (423)
.-..|-+|+.-+|+|.||+|||||+..|-. .+.-... .+++- +-.=...+.+.+++.+
T Consensus 25 vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~-Le~PtsG-~v~v~G~di~~l~~~~Lr~~R~~I 85 (339)
T COG1135 25 VSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LERPTSG-SVFVDGQDLTALSEAELRQLRQKI 85 (339)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCC-EEEECCEECCCCCHHHHHHHHHHC
T ss_conf 068873886899974888867889999856-5799886-499868740217867899988650
Done!