HHsearch alignment for GI: 254780810 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.24 E-value=0.036 Score=33.37 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf 136888998865-510231222048778789999999999861188646999950878789999
Q gi|254780810|r 159 DISSRVIDLIAP-IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTD 221 (423)
Q Consensus 159 ~~~~~~id~~~p-ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e 221 (423)
T Consensus 3 pTG~~~lD~~~gGl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g-~~Vl~~slEm~~~~~~~ 65 (186)
T pfam03796 3 PTGFTDLDQLTGGLQKGDLIIIAARPSMGKTAFALNIARNAALKQD-KPVLFFSLEMSAEQLAE 65 (186)
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHH
T ss_conf 8880778864269888817999967999879999999999999709-96687547552999999