HHsearch alignment for GI: 254780810 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=92.15 E-value=0.19 Score=28.67 Aligned_cols=39 Identities=36% Similarity=0.681 Sum_probs=28.5
Q ss_pred HHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8998865510--231222048778789999999999861188
Q gi|254780810|r 164 VIDLIAPIGK--GQRSLIVAPPRTGKTILLQNIAHSIKKNHP 203 (423)
Q Consensus 164 ~id~~~pig~--gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~ 203 (423)
T Consensus 39 iv~m-Ik~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~vP 79 (395)
T pfam06068 39 IVEM-IKEGKIAGRAVLIAGPPGTGKTALAIAISKELGEDTP 79 (395)
T ss_pred HHHH-HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9999-9727757738998779998889999999997487997