HHsearch alignment for GI: 254780810 and conserved domain: pfam07498
>pfam07498 Rho_N Rho termination factor, N-terminal domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).
Probab=98.35 E-value=4.6e-07 Score=65.63 Aligned_cols=43 Identities=44% Similarity=0.581 Sum_probs=40.3
Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9970998999999998389885766678999999987520587
Q gi|254780810|r 8 ELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDV 50 (423)
Q Consensus 8 eL~~~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g 50 (423)
T Consensus 1 eL~~~~~~eL~~iA~elgI~~~s~~rKqeLIf~Ilk~qa~~~g 43 (43)
T pfam07498 1 ELKEKTLAELREIAKELGIENYSRLRKQELIFAILKAQAEKGG 43 (43)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9331889999999999499870014599999999999977278