HHsearch alignment for GI: 254780810 and conserved domain: pfam07498

>pfam07498 Rho_N Rho termination factor, N-terminal domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).
Probab=98.35  E-value=4.6e-07  Score=65.63  Aligned_cols=43  Identities=44%  Similarity=0.581  Sum_probs=40.3

Q ss_pred             HHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             9970998999999998389885766678999999987520587
Q gi|254780810|r    8 ELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDV   50 (423)
Q Consensus         8 eL~~~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g   50 (423)
T Consensus         1 eL~~~~~~eL~~iA~elgI~~~s~~rKqeLIf~Ilk~qa~~~g   43 (43)
T pfam07498         1 ELKEKTLAELREIAKELGIENYSRLRKQELIFAILKAQAEKGG   43 (43)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             9331889999999999499870014599999999999977278