BLAST/PSIBLAST alignment of GI: 254780810 and GI: 116254464 at iteration 1
>gi|116254464|ref|YP_770302.1| transcription termination factor Rho [Rhizobium leguminosarum bv. viciae 3841] Length = 421
>gi|115259112|emb|CAK10223.1| putative transcription termination factor rho [Rhizobium leguminosarum bv. viciae 3841] Length = 421
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/420 (82%), Positives = 389/420 (92%)
Query: 1 MSEMKLQELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEV 60
M+EMKLQELK+KSPT LLAFAESLE+ENA+ MRKQELMF+ILK+L+ +DVEIIGEGV+EV
Sbjct: 1 MAEMKLQELKSKSPTDLLAFAESLEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEV 60
Query: 61 LQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVN 120
LQDGFGFLRS +ANYL GPDDIY+SPSQI+ FSLKTGDTVEG IR P+EGERYFALLKVN
Sbjct: 61 LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN 120
Query: 121 AINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIV 180
INFD PE++R+K+HFDNLTPLYP++RF MEL+ P KD+S RVIDL+AP+GKGQR LIV
Sbjct: 121 TINFDDPEKIRHKVHFDNLTPLYPNERFKMELDIPTTKDLSPRVIDLVAPLGKGQRGLIV 180
Query: 181 APPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAA 240
APPRTGKT+LLQNIAHSI NHPECYLIVLLIDERPEEVTDMQRSV+GEVISSTFDE A
Sbjct: 181 APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAV 240
Query: 241 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRP 300
RHVQVAEMVI KAK LVE+G DVVILLDSITRL RAYN ++PSSGK+LTGGVDANALQRP
Sbjct: 241 RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP 300
Query: 301 KRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPA 360
KRFFGAARNI+EGGSLTII TAL+DTGSRMDEVIFEEFKGTGNSEIVL+RK+ADKRIFPA
Sbjct: 301 KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA 360
Query: 361 MDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKDNKDFFYSMN 420
MDI+KSGTRKEDLLV RQDLQK+F+LRRI++ M ++DAIEFLIDKLKQTK+N DFF SMN
Sbjct: 361 MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNSDFFDSMN 420