RPSBLAST alignment for GI: 254780810 and conserved domain: TIGR00767

>gnl|CDD|162030 TIGR00767, rho, transcription termination factor Rho. Members of this family differ in the specificity of RNA binding. Length = 415

 Score =  693 bits (1791), Expect = 0.0
 Identities = 280/418 (66%), Positives = 351/418 (83%), Gaps = 3/418 (0%)

Query: 4   MKLQELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQD 63
             ++ELKN    +L   AE L +EN + ++KQEL+F+ILK  + +   I GEGV+E+L D
Sbjct: 1   YNIEELKNMPLEELRKLAEQLGVENTSSLKKQELIFAILKAHAEQGGLIFGEGVLEILPD 60

Query: 64  GFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAIN 123
           GFGFLRSPD++YL GPDDIYVSPSQI+ F+L+TGDT+EG IR+P+EGERYFALLKV ++N
Sbjct: 61  GFGFLRSPDSSYLPGPDDIYVSPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVN 120

Query: 124 FDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPP 183
            D PE+ +N++ F+NLTPLYP++R  +E      +D+S+RV+DL APIGKGQR LIVAPP
Sbjct: 121 GDDPEKAKNRVLFENLTPLYPNERLRLET---STEDLSTRVLDLFAPIGKGQRGLIVAPP 177

Query: 184 RTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHV 243
           + GKT+LLQ IA +I +NHPE  LIVLLIDERPEEVTDMQRSV+GEV++STFDE A+RHV
Sbjct: 178 KAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHV 237

Query: 244 QVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRF 303
           QVAEMVI KAK LVE+  DVVILLDSITRL RAYN + P+SGK+L+GGVDANAL RPKRF
Sbjct: 238 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRF 297

Query: 304 FGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDI 363
           FGAARNI+EGGSLTII TAL+DTGSRMDEVIFEEFKGTGN E+ L+RK+AD+RIFPA+DI
Sbjct: 298 FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDI 357

Query: 364 IKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKDNKDFFYSMNK 421
            KSGTRKE+LL+  ++LQK+++LR+I+S M+S +A+EFLI KLK+TK N++F  SM +
Sbjct: 358 KKSGTRKEELLLTPEELQKIWVLRKIISPMDSIEAMEFLISKLKKTKTNEEFLESMKR 415