RPSBLAST alignment for GI: 254780810 and conserved domain: cd01132
>gnl|CDD|29998 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.. Length = 274
Score = 39.8 bits (93), Expect = 0.002
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 163 RVIDLIAPIGKGQRSLIVAPPRTGKT-ILLQNIAHSIKKNHPECYLIVLLIDERPEEVTD 221
+ ID + PIG+GQR LI+ +TGKT I + I + K Y I + I ++ V
Sbjct: 58 KAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGKK---VYCIYVAIGQKASTVAQ 114
Query: 222 MQRSVQGE-------VISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC 274
+ ++++ V+++T + A A + ++ G +I+ D +++
Sbjct: 115 VVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQA 174
Query: 275 RAY 277
AY
Sbjct: 175 VAY 177