RPSBLAST alignment for GI: 254780810 and conserved domain: cd01136

>gnl|CDD|30002 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.. Length = 326
 Score =  106 bits (267), Expect = 8e-24
 Identities = 80/281 (28%), Positives = 126/281 (44%), Gaps = 31/281 (11%)

Query: 137 DNLTPLYPDKRFNMELNNP---------ENKDISSRVIDLIAPIGKGQRSLIVAPPRTGK 187
           D   PL  + R+ +    P         E      R ID +  +GKGQR  I A    GK
Sbjct: 23  DGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGVGK 82

Query: 188 TILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTD----------MQRSVQGEVISSTFD 236
           + LL  IA           + V+ LI ER  EV +          ++RSV   V+ +T D
Sbjct: 83  STLLGMIA-----RGTTADVNVIALIGERGREVREFIEKDLGEEGLKRSV---VVVATSD 134

Query: 237 ESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKIL-TGGVDAN 295
           ES    V+ A    A A+   + G DV++L+DS+TR   A   +  ++G+   T G   +
Sbjct: 135 ESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPS 194

Query: 296 ALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADK 355
                 R    A N  + GS+T   T LV+ G  ++E I +  +   +  IVL R +A  
Sbjct: 195 VFALLPRLLERAGN-SDKGSITAFYTVLVE-GDDLNEPIADAVRSILDGHIVLSRALAAA 252

Query: 356 RIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSS 396
             +PA+D++KS +R  + +V  +  +    LR ++S+    
Sbjct: 253 GHYPAIDVLKSISRLMNAVVTPEHKEAARKLRELLSAYQEV 293