BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter asiaticus str. psy62] (423 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/423 (100%), Positives = 423/423 (100%) Query: 1 MSEMKLQELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEV 60 MSEMKLQELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEV Sbjct: 1 MSEMKLQELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEV 60 Query: 61 LQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVN 120 LQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVN Sbjct: 61 LQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVN 120 Query: 121 AINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIV 180 AINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIV Sbjct: 121 AINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIV 180 Query: 181 APPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAA 240 APPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAA Sbjct: 181 APPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAA 240 Query: 241 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRP 300 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRP Sbjct: 241 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRP 300 Query: 301 KRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPA 360 KRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPA Sbjct: 301 KRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPA 360 Query: 361 MDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKDNKDFFYSMN 420 MDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKDNKDFFYSMN Sbjct: 361 MDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKDNKDFFYSMN 420 Query: 421 KQN 423 KQN Sbjct: 421 KQN 423 >gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 67.8 bits (164), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 30/259 (11%) Query: 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECY--LIVLLIDERPEEVT 220 RVID+ P+ GQR + A GK+ LL A S +C+ +I+ L+ ER EV Sbjct: 150 RVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS------DCFDKVIISLVGERGREVR 203 Query: 221 DMQRSVQGE------VISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC 274 + G+ V+ +T DES + A+ G +V+++LDSITR Sbjct: 204 EFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFA 263 Query: 275 RAYNVLMPSSGKI-LTGGVDANAL-QRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDE 332 + + +SG++ + G + + P+ + KE G++T + + LVD G ++ Sbjct: 264 HSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVD-GDNHND 322 Query: 333 VIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSS 392 I + + + IVL R +A++ +P +D + S +R D + +++VSS Sbjct: 323 PIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADE-------KKLVSS 375 Query: 393 MNSSDAIEFLIDKLKQTKD 411 + LI + ++T+D Sbjct: 376 LT------HLIHRFEETRD 388 >gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 44.7 bits (104), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 25/225 (11%) Query: 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDM 222 +VIDLI+P KG + + GKT+L+ + +++ K H Y + + ER E D+ Sbjct: 138 KVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGNDL 196 Query: 223 Q------------RSVQGEVISS-------TFDESAARHVQVAEMVIAKAKCLVEYGLDV 263 R G + S +E +VA + A+ + G DV Sbjct: 197 YHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDV 256 Query: 264 VILLDSITRLCRAYNVLMPSSGKI--LTGGVDANALQRPKRFFGAARNIKEGGSLTIIGT 321 + +D+I R +A + + G+I G AL+ + +K GS+T + Sbjct: 257 LFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLK--GSITSVQA 314 Query: 322 ALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKS 366 V D F ++ VL R+I++K I+PA+D + S Sbjct: 315 IYVPADDLTDPAPATSFTHL-DATTVLSRQISEKGIYPAIDPLDS 358 >gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 13/131 (9%) Query: 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILL------QNIAHSIKKNHPECYLIVLLIDERP 216 + ID + PIG+GQR LI+ +TGKT ++ Q +H + Y I + I ++ Sbjct: 151 KAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKR 210 Query: 217 EEVTDMQRSVQ--GEVISSTFDESAARHVQVAEMVIAKAKCLV-EY----GLDVVILLDS 269 V ++++ G + S ++A +++ A C + EY G +I D Sbjct: 211 SSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDD 270 Query: 270 ITRLCRAYNVL 280 + + AY L Sbjct: 271 LQKHAVAYRQL 281 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 27.7 bits (60), Expect = 0.40, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 15/91 (16%) Query: 164 VIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-------LIDERP 216 V D I G+ IV P GKT LL+ + IK P+C I L ID++ Sbjct: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIK---PDCGFITLGTNLKIATIDQKR 356 Query: 217 EEVTDMQRSVQGEVISSTFDE----SAARHV 243 E++ D +S+ + S+ D +RHV Sbjct: 357 EDI-DPDKSLASYLTGSSGDSLMVRGESRHV 386 >gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 611 Score = 27.7 bits (60), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 8/73 (10%) Query: 292 VDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERK 351 +DAN+ + P+RF I E G ++ G + + S +D V+F G + ++ + Sbjct: 379 LDANS-KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVF------GRAAVIRASE 431 Query: 352 IADKRI-FPAMDI 363 + DK P++DI Sbjct: 432 MIDKSSPIPSLDI 444 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 26.6 bits (57), Expect = 0.89, Method: Compositional matrix adjust. Identities = 10/18 (55%), Positives = 14/18 (77%) Query: 178 LIVAPPRTGKTILLQNIA 195 L+V PP TGKT+L + +A Sbjct: 185 LLVGPPGTGKTLLARAVA 202 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 16/30 (53%) Query: 173 KGQRSLIVAPPRTGKTILLQNIAHSIKKNH 202 KG V PP GKT L Q+IA + + + Sbjct: 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQY 394 >gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 465 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 9/16 (56%), Positives = 10/16 (62%) Query: 120 NAINFDVPERVRNKIH 135 + NFDVP R N IH Sbjct: 316 HVFNFDVPNRAENYIH 331 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 9/24 (37%), Positives = 16/24 (66%) Query: 173 KGQRSLIVAPPRTGKTILLQNIAH 196 +G+R +I P +GK+ L++ I H Sbjct: 42 RGERVIIAGPSGSGKSTLIRCINH 65 >gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] Length = 334 Score = 24.6 bits (52), Expect = 3.5, Method: Compositional matrix adjust. Identities = 11/24 (45%), Positives = 13/24 (54%) Query: 178 LIVAPPRTGKTILLQNIAHSIKKN 201 L V PP GKT L Q +A + N Sbjct: 58 LFVGPPGLGKTTLAQVVARELGVN 81 >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%) Query: 162 SRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNI 194 S VID+I G+ +I PP TGK+ + NI Sbjct: 411 SAVIDVI----NGKNLIIEGPPGTGKSQTITNI 439 >gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 504 Score = 23.9 bits (50), Expect = 4.9, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Query: 160 ISSRVIDLIAPIGKGQRS---LIVAPPRTGKTILLQNIAHSI 198 +S+ + L +G QRS +I P GKT L NIA+++ Sbjct: 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNV 243 >gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 433 Score = 23.5 bits (49), Expect = 7.0, Method: Compositional matrix adjust. Identities = 12/45 (26%), Positives = 21/45 (46%) Query: 332 EVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVE 376 E + EF+ ++ + +A K F DI+ GT +LV+ Sbjct: 283 EALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLMLVD 327 >gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 369 Score = 23.5 bits (49), Expect = 7.9, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 19/30 (63%) Query: 41 ILKVLSGRDVEIIGEGVIEVLQDGFGFLRS 70 ++ + SGRD ++IG G++ LQ LRS Sbjct: 29 VVSLQSGRDNQLIGYGLVVGLQGTGDSLRS 58 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.136 0.375 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 265,706 Number of Sequences: 1233 Number of extensions: 11534 Number of successful extensions: 59 Number of sequences better than 100.0: 23 Number of HSP's better than 100.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 25 length of query: 423 length of database: 328,796 effective HSP length: 76 effective length of query: 347 effective length of database: 235,088 effective search space: 81575536 effective search space used: 81575536 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)