HHsearch alignment for GI: 254780811 and conserved domain: PRK10278
>PRK10278 putative transcriptional regulator; Provisional.
Probab=96.59 E-value=0.05 Score=30.87 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCC---
Q ss_conf 4668999999999999999999999899999875546742679999999999999998999999--99999997012---
Q gi|254780811|r 37 SQFNLCIKSIHILSVISWMAGLLYMPRIFVYHSLSAPDTDQYKTFEIMEERLFKVIMNPAMILS--WVCGLYLAWKT--- 111 (178)
Q Consensus 37 ~~~YlwiKalHIi~Vi~WmAGLfyLPRlfVyh~e~~~~~~~~~~~~~merrL~~~I~~PAmila--~i~Gl~L~~~~--- 111 (178)
T Consensus 1 m~~Y~~lKhlHl~~v~l--Sv~~F~lR~~--w~~~~--S~------~l~~rwvki~--PHviDT~LLlSgi~L~~~~~~~ 66 (130)
T PRK10278 1 MTSFSTLLSVHLISVAL--SVGLFVLRFW--WRYQK--HP------LAFARWTRIV--PPVVDTLLLLSGIGLMAKTHIL 66 (130)
T ss_pred CCHHHHHHHHHHHHHHH--HHHHHHHHHH--HHHCC--CH------HHHCCHHHHC--CCHHHHHHHHHHHHHHHHHCCC
T ss_conf 94799999999999999--9999999999--99879--86------6725547727--5247689999999999997658
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHC
Q ss_conf 123-203899999999999999999999999995699998846899999999-99999999998406
Q gi|254780811|r 112 FYI-HIGWLRLKMISVLFLSFYHVYLSFVMRKFRDKKLFHSPKYFKIINEIP-TLIMIIIVFLSVIK 176 (178)
Q Consensus 112 ~~~-~~~Wl~vKL~~V~lL~~yH~~~~~~lk~~~~g~~~~s~~~~R~~NEiP-~llli~IViLVVvK 176 (178)
T Consensus 67 Pf~~~~~WLt~Kl~~ll~YI~LG~i----AL~~r~~r----s~~~R~~Af~~Al~~~~~iv~vA~TK 125 (130)
T PRK10278 67 PFTGQGQWLTEKLFGVIIYIVLGFI----ALDYRRMR----SQQARFIAFPLALVVLYIIIKLATTK 125 (130)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH----HHHCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7778986599999999999999999----97111361----16589999999999999999999606