HHsearch alignment for GI: 254780811 and conserved domain: TIGR00701
>TIGR00701 TIGR00701 conserved hypothetical protein TIGR00701; InterPro: IPR014351 There is currently no experimental data for members of this entry or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments). There is an indirect indication of a link between this protein and the function or assembly of cytochromes: in Escherichia coli, strains producing related proteins not included in this entry turn pink, perhaps because of an excess of accumulated haems ..
Probab=100.00 E-value=0 Score=360.02 Aligned_cols=140 Identities=39% Similarity=0.820 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C
Q ss_conf 6899999999999999999999989999987554674267999-----999999999999899999999999997012-1
Q gi|254780811|r 39 FNLCIKSIHILSVISWMAGLLYMPRIFVYHSLSAPDTDQYKTF-----EIMEERLFKVIMNPAMILSWVCGLYLAWKT-F 112 (178)
Q Consensus 39 ~YlwiKalHIi~Vi~WmAGLfyLPRlfVyh~e~~~~~~~~~~~-----~~merrL~~~I~~PAmila~i~Gl~L~~~~-~ 112 (178)
T Consensus 1 yylWfKafHlI~~i~WmAgLfYLpRlfVYHaea~~~~E~~~t~lkkqyq~~EkkLy~fI~~PaM~~T~i~gi~~~~iep~ 80 (151)
T TIGR00701 1 YYLWFKAFHLISVIVWMAGLFYLPRLFVYHAEAKIEKELASTVLKKQYQVMEKKLYRFIASPAMVVTLIFGILLLFIEPE 80 (151)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 94278899999999999998888788666221115765025566667899999999863485079999999999986763
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC---CC
Q ss_conf 23203-89999999999999999999999999569999884689999999999999999998406---89
Q gi|254780811|r 113 YIHIG-WLRLKMISVLFLSFYHVYLSFVMRKFRDKKLFHSPKYFKIINEIPTLIMIIIVFLSVIK---PF 178 (178)
Q Consensus 113 ~~~~~-Wl~vKL~~V~lL~~yH~~~~~~lk~~~~g~~~~s~~~~R~~NEiP~llli~IViLVVvK---PF 178 (178)
T Consensus 81 ~~ksgGWl~~Kl~~V~lLl~yHfyc~r~~k~lakg~~~~s~~fyR~~NEaPtIlmv~iVilvvvKnnlPf 150 (151)
T TIGR00701 81 VLKSGGWLHIKLALVVLLLIYHFYCARVMKDLAKGKSRRSKKFYRVLNEAPTILMVVIVILVVVKNNLPF 150 (151)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 3002455999999999999999999999999743865213213012432669999999999998315789