HHsearch alignment for GI: 254780811 and conserved domain: pfam04247
>pfam04247 SirB Invasion gene expression up-regulator, SirB. SirB up-regulates Salmonella typhimurium invasion gene transcription. It is, however, not essential for the expression of these genes. Its function is unknown.
Probab=96.29 E-value=0.076 Score=29.80 Aligned_cols=114 Identities=23% Similarity=0.328 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCC--CCHH
Q ss_conf 6899999999999999999999989999987554674267999999999999999899999--99999999701--2123
Q gi|254780811|r 39 FNLCIKSIHILSVISWMAGLLYMPRIFVYHSLSAPDTDQYKTFEIMEERLFKVIMNPAMIL--SWVCGLYLAWK--TFYI 114 (178)
Q Consensus 39 ~YlwiKalHIi~Vi~WmAGLfyLPRlfVyh~e~~~~~~~~~~~~~merrL~~~I~~PAmil--a~i~Gl~L~~~--~~~~ 114 (178)
T Consensus 1 mY~~lkh~H~~~v~l--S~~lF~lR~~~~~~~s----~------~l~~k~~ki~--PHiiDTlLL~Sgi~L~~~~~~~Pf 66 (122)
T pfam04247 1 MYLALKHLHLTLVAL--SVLLFVLRGVLMLRGS----P------WLQKKWVKIL--PHVIDTLLLLSGIALAFILGQYPF 66 (122)
T ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHHHHHCCC----H------HHHCCHHHHC--HHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 908899999999999--9999999999998188----2------5525158752--078889999999999999855654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHCC
Q ss_conf 2038999999999999999999999999956999988468999999999999-99999984068
Q gi|254780811|r 115 HIGWLRLKMISVLFLSFYHVYLSFVMRKFRDKKLFHSPKYFKIINEIPTLIM-IIIVFLSVIKP 177 (178)
Q Consensus 115 ~~~Wl~vKL~~V~lL~~yH~~~~~~lk~~~~g~~~~s~~~~R~~NEiP~lll-i~IViLVVvKP 177 (178)
T Consensus 67 ~~~WLt~Kl~~lv~YI~lg~~------Al-r~~----~~~~r~~af~~Al~~~~~i~~vA~tk~ 119 (122)
T pfam04247 67 VDPWLTEKILGLVAYIVLGVI------AL-RGR----TKGFRIFAFLGALGWFVYIVKLATTKQ 119 (122)
T ss_pred CCHHHHHHHHHHHHHHHHHHH------HH-CCC----CHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 233999999999999999999------98-268----742899999999999999999998156