Query gi|254780811|ref|YP_003065224.1| hypothetical protein CLIBASIA_03510 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 178
No_of_seqs 115 out of 1169
Neff 5.5
Searched_HMMs 33803
Date Wed Jun 1 13:29:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780811.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2vgl_A Adaptor protein comple 18.8 46 0.0014 12.9 1.1 19 112-130 30-48 (102)
2 >1pi1_A MOB1A; mitotic EXIT ne 16.5 58 0.0017 12.3 1.2 47 47-93 83-129 (185)
3 >2zsh_B Della protein GAI; pla 14.7 64 0.0019 12.0 1.3 23 24-46 62-84 (110)
4 >1vf5_B Subunit IV; photosynth 11.0 84 0.0025 11.3 4.2 21 44-64 24-44 (90)
5 >2cwo_A P21, RNA silencing sup 8.6 1E+02 0.003 10.8 1.6 18 1-18 21-38 (115)
6 >1c05_A Ribosomal protein S4 d 8.2 1.1E+02 0.0032 10.7 3.5 27 67-93 11-37 (55)
7 >2rdd_B UPF0092 membrane prote 8.1 1.1E+02 0.0032 10.7 1.5 15 162-176 8-22 (37)
8 >1v9v_A KIAA0561 protein; heli 7.6 1.1E+02 0.0034 10.5 1.5 13 81-93 11-23 (114)
9 >2i2j_A Signaling peptide UA15 5.5 1.5E+02 0.0046 9.7 2.2 15 152-166 5-19 (26)
10 >2ck3_D ATP synthase beta chai 4.9 1.6E+02 0.0048 9.6 -0.2 33 72-104 34-66 (95)
No 1
>>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_A 2jkt_A (A:221-322)
Probab=18.82 E-value=46 Score=12.89 Aligned_cols=19 Identities=21% Similarity=0.667 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 1232038999999999999
Q gi|254780811|r 112 FYIHIGWLRLKMISVLFLS 130 (178)
Q Consensus 112 ~~~~~~Wl~vKL~~V~lL~ 130 (178)
+....||+++|+.=.+-+.
T Consensus 30 ~~vp~PwLQvklLrlL~~l 48 (102)
T 2vgl_A 30 YFVPAPWLSVKLLRLLQCY 48 (102)
T ss_dssp TTEESHHHHHHHHHHGGGS
T ss_pred HCCCCHHHHHHHHHHHHHH
T ss_conf 5588588899999999873
No 2
>>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} (A:)
Probab=16.55 E-value=58 Score=12.31 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999989999987554674267999999999999999
Q gi|254780811|r 47 HILSVISWMAGLLYMPRIFVYHSLSAPDTDQYKTFEIMEERLFKVIM 93 (178)
Q Consensus 47 HIi~Vi~WmAGLfyLPRlfVyh~e~~~~~~~~~~~~~merrL~~~I~ 93 (178)
-|-.++.|...++-=+++|---...+-.+......+.+-|||+|...
T Consensus 83 Yi~~~~~w~~~~l~d~~iFPt~~~~~fP~~F~~~v~~I~rrLfRvya 129 (185)
T 1pi1_A 83 YIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYA 129 (185)
T ss_dssp HHHHHHHHHHHHHTCTTTSCSSTTSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998545975488988998987799999999999999999
No 3
>>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_B* (B:)
Probab=14.75 E-value=64 Score=12.03 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999960814668999999
Q gi|254780811|r 24 FLFLSLLCFFFLTSQFNLCIKSI 46 (178)
Q Consensus 24 ~~~~~~~~~~~~~~~~YlwiKal 46 (178)
++-++----++||+|++.|+.+.
T Consensus 62 ls~LasDTVHYNPSDLs~WveSM 84 (110)
T 2zsh_B 62 LSQLATETVHYNPAELYTWLDSM 84 (110)
T ss_dssp ---CHHHHTTSCTTBHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 76741564004868889999999
No 4
>>1vf5_B Subunit IV; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} (B:71-160)
Probab=10.96 E-value=84 Score=11.34 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999899
Q gi|254780811|r 44 KSIHILSVISWMAGLLYMPRI 64 (178)
Q Consensus 44 KalHIi~Vi~WmAGLfyLPRl 64 (178)
|..-++++.+=...|+.+|-+
T Consensus 24 KLgGV~Al~~siliL~~lP~l 44 (90)
T 1vf5_B 24 KLLGVLLMASVPLGLILVPFI 44 (90)
T ss_dssp TTHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999999999999999987
No 5
>>2cwo_A P21, RNA silencing suppressor; octamer, ring, head-TO-head, tail-TO-tail, all alpha helical, RNA-binding protein, RNA binding protein; 3.30A {Beet yellows virus} (A:1-115)
Probab=8.60 E-value=1e+02 Score=10.80 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=13.0
Q ss_pred CEEEEECCCHHHHHHHHH
Q ss_conf 905413662178999999
Q gi|254780811|r 1 MKFFLSDSIGKKAQAIAF 18 (178)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (178)
||||+.|....+|.-|.-
T Consensus 21 mkff~~d~etsra~srse 38 (115)
T 2cwo_A 21 MKFFLKDGETSRALSRSE 38 (115)
T ss_dssp CCCCCCSSCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHH
T ss_conf 134323642555665359
No 6
>>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} (A:22-76)
Probab=8.22 E-value=1.1e+02 Score=10.70 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=18.9
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 987554674267999999999999999
Q gi|254780811|r 67 YHSLSAPDTDQYKTFEIMEERLFKVIM 93 (178)
Q Consensus 67 yh~e~~~~~~~~~~~~~merrL~~~I~ 93 (178)
--+...++...+..+...|+||+..+-
T Consensus 11 ~~A~k~~g~tg~~ll~lLE~RLD~vvy 37 (55)
T 1c05_A 11 EEAGKMPGKHGENFMILLESRLDNLVY 37 (55)
T ss_dssp HHHTTSSSTHHHHHHHHHHHBHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999865898514289999987545411
No 7
>>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli} (B:)
Probab=8.15 E-value=1.1e+02 Score=10.68 Aligned_cols=15 Identities=7% Similarity=0.434 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999998406
Q gi|254780811|r 162 PTLIMIIIVFLSVIK 176 (178)
Q Consensus 162 P~llli~IViLVVvK 176 (178)
|.+++++|-.....+
T Consensus 8 ~~v~i~~ifYFllIR 22 (37)
T 2rdd_B 8 MLVVFGLIFYFMILR 22 (37)
T ss_dssp HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999937
No 8
>>1v9v_A KIAA0561 protein; helix bundle, MAST205, microtubule-associated serine/threonine protein kinase, structural genomics; NMR {Homo sapiens} (A:)
Probab=7.56 E-value=1.1e+02 Score=10.52 Aligned_cols=13 Identities=31% Similarity=0.325 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780811|r 81 FEIMEERLFKVIM 93 (178)
Q Consensus 81 ~~~merrL~~~I~ 93 (178)
-+.||.||-.+|.
T Consensus 11 taQMEerL~~fI~ 23 (114)
T 1v9v_A 11 TAQMEGRLQEFLT 23 (114)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999999
No 9
>>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic} (A:)
Probab=5.46 E-value=1.5e+02 Score=9.75 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 468999999999999
Q gi|254780811|r 152 PKYFKIINEIPTLIM 166 (178)
Q Consensus 152 ~~~~R~~NEiP~lll 166 (178)
+.|+|.||.--+-.+
T Consensus 5 stffrlfnrsftqal 19 (26)
T 2i2j_A 5 STFFRLFNRSFTQAL 19 (26)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999958999986
No 10
>>2ck3_D ATP synthase beta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} (D:365-459)
Probab=4.91 E-value=1.6e+02 Score=9.64 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 467426799999999999999989999999999
Q gi|254780811|r 72 APDTDQYKTFEIMEERLFKVIMNPAMILSWVCG 104 (178)
Q Consensus 72 ~~~~~~~~~~~~merrL~~~I~~PAmila~i~G 104 (178)
++-|+.+...-...||+-++.+-|-...--.+|
T Consensus 34 dELseeDk~~V~RARklerFLsQpF~vae~fTg 66 (95)
T 2ck3_D 34 DELSEEDKLTVSRARKIQRFLSQPFQVAEVFTG 66 (95)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTCCCCGGGHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 548989999999999999996798436576427
Done!