RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780811|ref|YP_003065224.1| hypothetical protein
CLIBASIA_03510 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)



>gnl|CDD|162002 TIGR00701, TIGR00701, conserved hypothetical integral membrane
           protein.  It appears this conserved hypothetical
           integral membrane protein is found only in gram negative
           bacteria. Completed genomes that include a member of
           this family include Rickettsia prowazekii, Synechocystis
           sp. PCC6803, and Helicobacter pylori. These proteins
           have 3 (Helicobacter pylori) to 5 (Synechocystis sp. PCC
           6803) GES predicted transmembrane regions. Most members
           have 4 GES predicted transmembrane regions.
          Length = 142

 Score =  114 bits (287), Expect = 1e-26
 Identities = 60/139 (43%), Positives = 92/139 (66%), Gaps = 1/139 (0%)

Query: 41  LCIKSIHILSVISWMAGLLYMPRIFVYHSLSAPDTDQYKTFEIMEERLFKVIMNPAMILS 100
           L  K+ H++S I WMAGL Y+PR+FVYH+ +   ++   T ++ME++L++ IMNPAMI +
Sbjct: 3   LWFKAFHLISAICWMAGLFYLPRLFVYHAEAKIGSELDSTLQVMEKKLYRFIMNPAMIST 62

Query: 101 WVCGLYLAW-KTFYIHIGWLRLKMISVLFLSFYHVYLSFVMRKFRDKKLFHSPKYFKIIN 159
           ++ G+  A  + F    GWL  K+ +VL L  YH Y +  M+     K  HS K+++I+N
Sbjct: 63  FIFGIINAHIEPFVAKSGWLHFKLFAVLLLLIYHFYCARWMKDLAKGKNVHSKKFYRIVN 122

Query: 160 EIPTLIMIIIVFLSVIKPF 178
           E PT++M+IIV L V+KPF
Sbjct: 123 EAPTILMVIIVILVVVKPF 141


>gnl|CDD|177741 PLN00130, PLN00130, succinate dehydrogenase (SDH3); Provisional.
          Length = 213

 Score = 30.9 bits (69), Expect = 0.20
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 79  KTFEIMEERL--FKVIMNPAM-ILSWVCGLYLAWKTFYIHIGWLRLKMISVLFLSFYHVY 135
           K+F  +   L  ++  MN  + I + + G+YL   TF  ++ +L++ MI + + SFY V 
Sbjct: 122 KSFRPLSPHLSVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFYQV- 180

Query: 136 LSFVMRKFRDKKLFHSPKYFKIINEIPTLIMI 167
                       L+H+ +   +I  +  L  I
Sbjct: 181 ------------LYHTQQQLPVITSVTALAAI 200


>gnl|CDD|152732 pfam12297, EVC2_like, Ellis van Creveld protein 2 like protein.
          This family of proteins is found in eukaryotes.
          Proteins in this family are typically between 571 and
          1310 amino acids in length. There are two conserved
          sequence motifs: LPA and ELH. EVC2 is implicated in
          Ellis van Creveld chondrodysplastic dwarfism in humans.
          Mutations in this protein can give rise to this
          congenital condition. LIMBIN is a protein which shares
          around 80% sequence homology with EVC2 and it is
          implicated in a similar condition in bovine
          chondrodysplastic dwarfism.
          Length = 429

 Score = 27.1 bits (60), Expect = 2.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 18 FIALFVFLFLSLLCFFFL 35
           +A  V + L+LL FF L
Sbjct: 71 VVAFLVSIVLTLLAFFLL 88


>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 574

 Score = 26.3 bits (59), Expect = 5.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 1   MKFFLSDSIGKKAQAIAFIALFVF 24
           M +  +  +G  AQ  A IALFVF
Sbjct: 262 MLWLAAGGVGGNAQPGALIALFVF 285


>gnl|CDD|184397 PRK13922, PRK13922, rod shape-determining protein MreC;
          Provisional.
          Length = 276

 Score = 26.1 bits (58), Expect = 5.3
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 18 FIALFVFLFLSLLCFFFLTSQFNLCIKSI---HILSVISWMAGLLYMPRIFVYHSLS 71
           + L + + L LL    L +   L   S     +  V+S +  ++  PR FV     
Sbjct: 10 LLLLLLLILLLLLALALLLADRRLGSLSPVRQVVGDVVSPVQRVVNAPREFVSGVFE 66


>gnl|CDD|177384 PHA02550, 32, single-stranded DNA binding protein; Provisional.
          Length = 304

 Score = 25.8 bits (57), Expect = 6.0
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 68  HSLSA-PDTDQYKTFEIMEERLFKV 91
           H LS     D++K++E +E +  KV
Sbjct: 216 HDLSEFVAPDKFKSYEELETKFNKV 240


>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
           protein. 
          Length = 1394

 Score = 25.8 bits (57), Expect = 7.0
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

Query: 88  LFKVIMNPAM--ILSWV-CGLYLAWKTFYIHIGWLRLKMISVLFLSFYHVYLSF----VM 140
           LF V  N  M  ILS V   L      FY   G L   ++   F S   +   +    ++
Sbjct: 423 LFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIV 482

Query: 141 RKFRDKKLFHSPKYF---KIINEIPTLIMIIIVF 171
            K R   L+H P       II+EIP  I+  +VF
Sbjct: 483 EKHRKYALYH-PSADAIASIISEIPFKIIESVVF 515


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.338    0.148    0.471 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,975,242
Number of extensions: 185750
Number of successful extensions: 1012
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1004
Number of HSP's successfully gapped: 84
Length of query: 178
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,114,577
Effective search space: 374426507
Effective search space used: 374426507
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 54 (24.5 bits)