RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780811|ref|YP_003065224.1| hypothetical protein
CLIBASIA_03510 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.8 bits (77), Expect = 0.020
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 56/116 (48%)

Query: 47  HILSVISWMAGLLYMPRIFVYHSLSAPDTD------------------QYK-TFEIMEER 87
             L+++ W+            +  + PD D                   Y  T +++   
Sbjct: 211 QGLNILEWLE-----------NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-- 257

Query: 88  LFKVIMNPAMI---LSWVC----GLYLA--------WKTFYIHIGWLRLKMISVLF 128
                  P  +   L        GL  A        W++F++ +     K I+VLF
Sbjct: 258 -----FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV----RKAITVLF 304


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.7 bits (60), Expect = 1.5
 Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 4/20 (20%)

Query: 1  MKFFLSDSIGKKAQAIAFIA 20
          +K +  DS    A A+A  A
Sbjct: 29 LKLYADDS----APALAIKA 44


>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
           domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
           motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
           3b6v_A*
          Length = 372

 Score = 26.0 bits (56), Expect = 5.0
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 61  MPRIFVYHSLSAPDTDQYKTFEIMEERLFKVIMNPAMILSWVCGLYLAWKTFYIHIGWLR 120
           MP+ F + ++   +  Q++ ++     L   ++       +  G     KT+ +      
Sbjct: 66  MPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGD 125

Query: 121 LKMISVLFLSFYHVYLSFVMRKFRDKKLFHSPKYFKIINE 160
            +   V+  SF H++      + +   +  S  Y +I  E
Sbjct: 126 PEKRGVIPNSFDHIFTHISRSQNQQYLVRAS--YLEIYQE 163


>2a1k_A GP32 single stranded DNA binding protein; Zn2+ binding subdomain,
           5-stranded beta-sheet, OB fold; 2.00A {Enterobacteria
           phage RB69} SCOP: b.40.4.7 PDB: 2atq_B* 1gpc_A
          Length = 233

 Score = 26.1 bits (57), Expect = 5.4
 Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 68  HSLSA-PDTDQYKTFEIMEERLFKVI 92
             LS     D++K+FE +  +  +V+
Sbjct: 194 VDLSEMTSKDKFKSFEELNTKFNQVL 219


>2iqc_A Protein FACF, fanconi anemia group F protein; heat-like repeat,
           DNA-damage, complex subunit, protein binding; 2.40A
           {Homo sapiens}
          Length = 210

 Score = 26.0 bits (57), Expect = 5.6
 Identities = 7/43 (16%), Positives = 17/43 (39%)

Query: 98  ILSWVCGLYLAWKTFYIHIGWLRLKMISVLFLSFYHVYLSFVM 140
           ++ W+ G    +  F   +    L +++    +   VYL  + 
Sbjct: 90  LVHWLLGNSEVFAAFCRALPAGLLTLVTSRHPALSPVYLGLLT 132


>3cl3_A ORF K13, KS-vflip; death effector domain, coiled-coil, coiled coil,
           cytoplasm, disease mutation, ectodermal dysplasia; 3.20A
           {Human herpesvirus 8}
          Length = 183

 Score = 25.5 bits (56), Expect = 8.0
 Identities = 5/25 (20%), Positives = 11/25 (44%)

Query: 1   MKFFLSDSIGKKAQAIAFIALFVFL 25
           + F   D+IG ++    F+     +
Sbjct: 118 LIFLSKDTIGSRSTPQTFLHWVYCM 142


>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate
           deaminase, coformycin 5'-phosphate, structural genomics;
           HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
          Length = 701

 Score = 24.9 bits (54), Expect = 9.3
 Identities = 6/45 (13%), Positives = 17/45 (37%)

Query: 109 WKTFYIHIGWLRLKMISVLFLSFYHVYLSFVMRKFRDKKLFHSPK 153
              F+  +  +   + +    +  H  L  + +KF    + ++ K
Sbjct: 187 ATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADK 231


>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw,
          transferase; 2.6A {Rauvolfia serpentina}
          Length = 421

 Score = 25.2 bits (54), Expect = 9.9
 Identities = 9/44 (20%), Positives = 22/44 (50%)

Query: 49 LSVISWMAGLLYMPRIFVYHSLSAPDTDQYKTFEIMEERLFKVI 92
          +S +  +    ++P I  Y +    + D  +T + +++ L KV+
Sbjct: 28 ISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSKVL 71


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.338    0.148    0.471 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,564,448
Number of extensions: 68586
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 44
Length of query: 178
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 92
Effective length of database: 3,608,246
Effective search space: 331958632
Effective search space used: 331958632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 53 (24.7 bits)