RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780811|ref|YP_003065224.1| hypothetical protein
CLIBASIA_03510 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)



>d2a1ka1 b.40.4.7 (A:32-241) Gene 32 protein (gp32) core
           {Enterobacteria phage RB69 [TaxId: 12353]}
          Length = 210

 Score = 25.3 bits (55), Expect = 3.5
 Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 68  HSLSA-PDTDQYKTFEIMEERLFKVI 92
             LS     D++K+FE +  +  +V+
Sbjct: 183 VDLSEMTSKDKFKSFEELNTKFNQVL 208


>d1vkba_ d.269.1.1 (A:) Hypothetical protein LOC223267 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 151

 Score = 24.4 bits (52), Expect = 5.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 60 YMPRIFVYHSL 70
          +M  IFVY +L
Sbjct: 2  HMAHIFVYGTL 12


>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 628

 Score = 24.1 bits (52), Expect = 6.3
 Identities = 8/54 (14%), Positives = 19/54 (35%)

Query: 109 WKTFYIHIGWLRLKMISVLFLSFYHVYLSFVMRKFRDKKLFHSPKYFKIINEIP 162
              F+  +  +   + +    +  H  L  + +KF    + ++ K F      P
Sbjct: 114 ATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQKSAP 167


>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK
          {Porphyromonas gingivalis [TaxId: 837]}
          Length = 186

 Score = 23.6 bits (51), Expect = 9.6
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 43 IKSIHILSVISWMAGLLYMPRIFVYH 68
          +     + V   +   L   RI+ +H
Sbjct: 72 MPQSRNIRVTRLVDMYLEHSRIWCFH 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.338    0.148    0.471 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 689,721
Number of extensions: 30917
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 32
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 50 (23.3 bits)