HHsearch alignment for GI: 254780812 and conserved domain: TIGR01108
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=95.51 E-value=0.05 Score=35.15 Aligned_cols=76 Identities=20% Similarity=0.191 Sum_probs=51.9
Q ss_pred HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHC----CCCCCE---
Q ss_conf 7777754981678438311006835677761272268999986308862360243110000134201----478722---
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRR----LTDSNA--- 264 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~----~~g~d~--- 264 (346)
T Consensus 156 a~~L~~~G~DSI~IKDM-aGlLTP~~AY--------ELV~alK~~~~n~pvhLH~H~TtG-mA~~AllkA~EAG~d~iDT 225 (616)
T TIGR01108 156 AKELLEMGVDSICIKDM-AGLLTPKVAY--------ELVSALKKEFGNLPVHLHSHATTG-MAEMALLKAIEAGADMIDT 225 (616)
T ss_pred HHHHHHHCCCEEEEECC-CCCCCHHHHH--------HHHHHHHHHCCCEEEEEECCCCHH-HHHHHHHHHHHCCCCCCHH
T ss_conf 99999818860552020-0464415899--------999999742397468863247233-7999999888707880020
Q ss_pred ----EECCCCCCHHHHH
Q ss_conf ----3046779989999
Q gi|254780812|r 265 ----IGLDWSVPLSFAL 277 (346)
Q Consensus 265 ----isiD~~~dl~~a~ 277 (346)
T Consensus 226 AisS~S~gtSHPptE~l 242 (616)
T TIGR01108 226 AISSMSGGTSHPPTETL 242 (616)
T ss_pred CCCCCCCCCCCCHHHHH
T ss_conf 05523478888747999