HHsearch alignment for GI: 254780812 and conserved domain: TIGR01854
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase; InterPro: IPR010138 This entry represents LpxH, or UDP-2,3-diacylglucosamine hydrolase (or pyrophosphatase), which is an essential enzyme in Escherichia coli that catalyses the fourth step in lipid A biosynthesis. This reaction involves pyrophosphate bond hydrolysis of the precursor UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate and UMP . Several Gram-negative bacteria have homologues of LpxH and/or LpxH2, while others have only distant orthologues of LpxH or LpxH2, or lack these enzymes altogether .; GO: 0016462 pyrophosphatase activity, 0009245 lipid A biosynthetic process, 0005737 cytoplasm.
Probab=93.89 E-value=0.043 Score=35.60 Aligned_cols=75 Identities=15% Similarity=0.278 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHCCCCEEEE----CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCH--HHHH
Q ss_conf 9999999977777549816784----383110068356777612722689999863088623602431100001--3420
Q gi|254780812|r 184 LSDVSAEYLIAQIHAGVDVIQI----FDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYML--KNYR 257 (346)
Q Consensus 184 lt~~~~~yl~~Qi~aGad~iqI----FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l--~~~~ 257 (346)
T Consensus 16 iTa~Fl~FL~~~A~G~AdALYILGDLFeaWIGDD~~~~l~~~va~~~r~vsd----~--GV~~-YF~~GNRDFLiG~~Fa 88 (241)
T TIGR01854 16 ITALFLDFLREEARGKADALYILGDLFEAWIGDDDPSALARSVAEAIRAVSD----Q--GVPC-YFMHGNRDFLIGKRFA 88 (241)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHCEECCCCCCHHHHHHHHHHHHHHC----C--CEEE-EEECCCCHHHHHHHHH
T ss_conf 8999999987523340000221012000114689721799999999998732----8--9079-8405985156668999
Q ss_pred CCCCCCEE
Q ss_conf 14787223
Q gi|254780812|r 258 RLTDSNAI 265 (346)
Q Consensus 258 ~~~g~d~i 265 (346)
T Consensus 89 r~aG~~LL 96 (241)
T TIGR01854 89 REAGMTLL 96 (241)
T ss_pred HHHCCEEC
T ss_conf 97088107