HHsearch alignment for GI: 254780812 and conserved domain: cd00717
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=100.00 E-value=0 Score=869.59 Aligned_cols=332 Identities=45% Similarity=0.788 Sum_probs=315.4
Q ss_pred HHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCCCE
Q ss_conf 99966998999976146231234579999976155389984279999998721287629872652133200104324433
Q gi|254780812|r 9 LEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADALGRNV 88 (346)
Q Consensus 9 l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~~v 88 (346)
T Consensus 1 l~al~~~~~~~~PvW~MRQAGRylpey~~~r~~~-~f~~~c~~pe~a~evtlqPi~rf~~DAaIlFSDIL~~~~alG~~v 79 (335)
T cd00717 1 LRALRGEPVDRPPVWFMRQAGRYLPEYRELRAKY-SFLELCKNPELAAEVTLQPVRRFGVDAAIIFSDILVPLEAMGMDV 79 (335)
T ss_pred CHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHCC-CHHHHHCCHHHHHHHHHCCHHHHCCCEEECCCCCCCCHHHHCCEE
T ss_conf 9131299999999888845662579999988469-999985599999999864098839875750453203649839838
Q ss_pred EEECCCCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 73168875222-33333554205670123443237877787642102453201111479999999961246776524677
Q gi|254780812|r 89 RFVENEGPRMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNR 167 (346)
Q Consensus 89 ~f~~~~GP~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~ 167 (346)
T Consensus 80 ~f~~~~GP~~~~pi~~~~d~~~-l~~~~~~~~l~~v~eai~~~r~~L~~~~pLIGF~G~PwTLasYmieG~~sk~~~~~k 158 (335)
T cd00717 80 EFVEGKGPVIPNPIRTEADVDR-LLVPDPEEELSYVYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAK 158 (335)
T ss_pred EECCCCCCCCCCCCCCHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf 9747978866898889999974-366470656569999999999973888876886387699999998389985579998
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 53013722289999999999999977777549816784383110068356777612722689999863088623602431
Q gi|254780812|r 168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
T Consensus 159 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGAd~iqIFDSwag~L~~~~f~~f~~p~~~~I~~~ik~~~~~vpiI~f~~ 238 (335)
T cd00717 159 KMMYTDPEAFHALLDKLTDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAK 238 (335)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 77613889999999999999999999999819987885075202068999999899999999999985289997899768
Q ss_pred CCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCC-CCEEEECCCC
Q ss_conf 1000013420147872230467799899997-0798469688884677099889999999999973259-9289608976
Q gi|254780812|r 248 GAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSG-PFIFNLGHGI 325 (346)
Q Consensus 248 g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~-~~I~nLGhGi 325 (346)
T Consensus 239 ~~~~~l~~~~~-~~~d~isiD~~~~l~~a~~~l~~~~~lQGNlDP~~L~~~~e~i~~~~~~il~~~~~~~g~IfnLGHGI 317 (335)
T cd00717 239 GAGGLLEDLAQ-LGADVVGLDWRVDLDEARKRLGPKVALQGNLDPALLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGI 317 (335)
T ss_pred CCHHHHHHHHH-CCCCEEECCCCCCHHHHHHHCCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 85789999986-39877742777898999998199827966898789769999999999999998489998598799986
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 336688999999999973
Q gi|254780812|r 326 TPQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 326 ~p~tp~eNv~~~v~~vr~ 343 (346)
T Consensus 318 ~p~tp~enV~~~ve~Vrs 335 (335)
T cd00717 318 LPDTPPENVKALVEAVHS 335 (335)
T ss_pred CCCCCHHHHHHHHHHHCC
T ss_conf 989899999999999629