HHsearch alignment for GI: 254780812 and conserved domain: cd03310

>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=98.51  E-value=6.5e-06  Score=62.44  Aligned_cols=188  Identities=15%  Similarity=0.124  Sum_probs=108.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHH
Q ss_conf             32011114799999999612467765246775301372228999999999999997777754981678438311006835
Q gi|254780812|r  137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEH  216 (346)
Q Consensus       137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~  216 (346)
T Consensus       115 ~~~vK~~i~GP~t~~~~~~~~-------------~~~~~~~~~l~~~la~~~~~e~~~l~~~g~~~iqiDEP~l~~~~~~  181 (321)
T cd03310         115 ALKVKVVVTGPLTLALLAFLP-------------NGEPDAYEDLAKSLAEFLREQVKELKNRGIVVVQIDEPSLGAVGAG  181 (321)
T ss_pred             CCCCEEEEECHHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCC
T ss_conf             777306981799999765177-------------7887569999999999999999999974998899658466416742


Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCCCCHHHHHCCCCCCEEECCCCC-------CHHHHHHHC--CCEEEE
Q ss_conf             67776127226899998630886236-02431100001342014787223046779-------989999707--984696
Q gi|254780812|r  217 EFENYAARSVGRIISAVRRKYPNAKF-ISFAKGAGYMLKNYRRLTDSNAIGLDWSV-------PLSFALELQ--KEGPVQ  286 (346)
Q Consensus       217 ~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~~~l~~~~~~~g~d~isiD~~~-------dl~~a~~~~--~~~~lq  286 (346)
T Consensus       182 ~~~--~~~~~~~~~~~~~~~~-~~~~~vH~C~~--~~~~~l~~-~~~d~l~~d~~~~~~~~~e~l~~~~~~~~~~~~~g~  255 (321)
T cd03310         182 AFE--DLEIVDAALEEVSLKS-GGDVEVHLCAP--LDYEALLE-LGVDVIGFDAAALPSKYLEDLKKLLRIGVRTLILGL  255 (321)
T ss_pred             CHH--HHHHHHHHHHHHCCCC-CCCEEEEEECC--CCHHHHHH-CCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf             122--6999999999715567-98679998059--88999985-799716887544764125679998860677743898


Q ss_pred             CCCCHHHHCCCHHHHHHHHHHHHHHHCC------CCCEEEECCCCCCCC---CHHHHHHHHHHHHH
Q ss_conf             8888467709988999999999997325------992896089763366---88999999999973
Q gi|254780812|r  287 GNLDPMRLVVGNQVMIDGVNAILDVLGS------GPFIFNLGHGITPQV---DPKNVLDLVKTVRS  343 (346)
Q Consensus       287 GNldP~~L~~~~e~i~~~~~~~l~~~~~------~~~I~nLGhGi~p~t---p~eNv~~~v~~vr~  343 (346)
T Consensus       256 g~~d~~~~~~~~~~~~e~i~~~~~~l~~~~~~~~e~l~v~PdCGl~~l~~~~A~~kL~~l~~aar~  321 (321)
T cd03310         256 VVTDNEAKGRNAWKEIERLEKLVRRLEEPGEVLDEILYLTPDCGLAFLPPQEARRKLALLAEAARE  321 (321)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             976078788886788889999999741101486402998089889979989999999999999677