Query         gi|254780812|ref|YP_003065225.1| uroporphyrinogen decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 346
No_of_seqs    184 out of 2022
Neff          6.8 
Searched_HMMs 39220
Date          Sun May 29 20:39:49 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780812.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01464 hemE uroporphyrinoge 100.0       0       0  966.9  22.2  336    7-343     1-351 (351)
  2 PRK00115 hemE uroporphyrinogen 100.0       0       0  892.6  30.7  343    1-345     1-346 (347)
  3 cd00717 URO-D Uroporphyrinogen 100.0       0       0  869.6  28.6  332    9-343     1-335 (335)
  4 COG0407 HemE Uroporphyrinogen- 100.0       0       0  789.7  28.6  342    3-345     5-349 (352)
  5 KOG2872 consensus              100.0       0       0  796.2  19.3  341    3-345    10-357 (359)
  6 pfam01208 URO-D Uroporphyrinog 100.0       0       0  667.4  29.6  334    3-344     1-337 (337)
  7 cd03307 Mta_CmuA_like MtaA_Cmu 100.0       0       0  649.9  24.5  308    9-343     1-326 (326)
  8 PRK06252 methylcobalamin:coenz 100.0       0       0  635.9  26.8  326    1-345     3-336 (339)
  9 cd00465 URO-D_CIMS_like The UR 100.0       0       0  636.0  18.7  297   21-343     1-306 (306)
 10 cd03465 URO-D_like The URO-D _ 100.0       0       0  588.2  25.9  318   10-343     2-330 (330)
 11 TIGR01463 mtaA_cmuA methyltran 100.0       0       0  418.8  21.0  321    1-346     3-350 (350)
 12 cd03308 CmuA_CmuC_like CmuA_Cm 100.0 2.7E-44       0  332.0  26.2  328    1-343     2-378 (378)
 13 cd03309 CmuC_like CmuC_like. P  99.6 7.1E-14 1.8E-18  118.3  16.4  192  139-338   113-316 (321)
 14 PRK00957 methionine synthase;   98.6 1.7E-06 4.3E-11   66.6  13.0  189  137-344   108-306 (307)
 15 cd03311 CIMS_C_terminal_like C  98.6 2.2E-06 5.5E-11   65.8  11.8  190  138-340   119-329 (332)
 16 cd03310 CIMS_like CIMS - Cobal  98.5 6.5E-06 1.7E-10   62.4  13.2  188  137-343   115-321 (321)
 17 PRK09121 5-methyltetrahydropte  98.5 3.4E-06 8.5E-11   64.4  11.7  179  144-343   129-333 (339)
 18 PRK04326 methionine synthase;   98.5 5.6E-06 1.4E-10   62.9  12.4  177  144-343   134-321 (330)
 19 pfam01717 Meth_synt_2 Cobalami  98.5 5.4E-06 1.4E-10   63.0  12.1  187  137-342   120-323 (324)
 20 PRK06520 5-methyltetrahydropte  98.2 9.7E-05 2.5E-09   54.2  12.8  209  123-343   118-366 (370)
 21 PRK01207 methionine synthase;   98.0  0.0001 2.6E-09   54.1  10.4  187  137-345   118-340 (343)
 22 PRK06233 hypothetical protein;  98.0 0.00024 6.2E-09   51.4  12.1  166  177-343   162-369 (372)
 23 COG0620 MetE Methionine syntha  97.8 0.00076 1.9E-08   47.9  11.9  199  127-345   116-328 (330)
 24 PRK08575 5-methyltetrahydropte  97.4  0.0026 6.8E-08   44.1   9.7  175  145-343   134-319 (320)
 25 PRK05222 5-methyltetrahydropte  96.5   0.031   8E-07   36.6   8.7   30  180-209   176-205 (756)
 26 cd03312 CIMS_N_terminal_like C  96.2    0.14 3.6E-06   32.0  14.1  166  137-326   150-324 (360)
 27 TIGR01235 pyruv_carbox pyruvat  96.2   0.018 4.6E-07   38.3   6.3  150  153-306   590-834 (1169)
 28 TIGR01371 met_syn_B12ind 5-met  96.2    0.08   2E-06   33.7   9.6   32  177-208   191-222 (778)
 29 PRK13116 consensus              95.7   0.086 2.2E-06   33.5   8.0   62  119-220    77-138 (278)
 30 TIGR02090 LEU1_arch isopropylm  95.7   0.022 5.7E-07   37.6   4.9   52  189-248   146-197 (371)
 31 TIGR01371 met_syn_B12ind 5-met  95.6    0.26 6.6E-06   30.1  12.2  195  132-345   564-776 (778)
 32 TIGR01108 oadA oxaloacetate de  95.5    0.05 1.3E-06   35.1   6.2   76  192-277   156-242 (616)
 33 COG0159 TrpA Tryptophan syntha  95.1    0.28 7.2E-06   29.9   9.0  132   30-221     3-139 (265)
 34 PRK12330 oxaloacetate decarbox  94.8   0.099 2.5E-06   33.1   5.9   68  188-265   157-229 (499)
 35 PRK13117 consensus              94.7    0.23 5.8E-06   30.5   7.6   54  119-207    77-130 (268)
 36 PRK13138 consensus              94.5    0.33 8.4E-06   29.4   8.1   21  120-141    74-94  (264)
 37 COG5016 Pyruvate/oxaloacetate   94.3    0.33 8.4E-06   29.4   7.8   54  187-250   157-210 (472)
 38 PRK12331 oxaloacetate decarbox  94.2    0.14 3.6E-06   32.0   5.7   71  186-267   154-228 (463)
 39 PRK12581 oxaloacetate decarbox  93.9    0.18 4.5E-06   31.3   5.7   70  186-266   163-236 (468)
 40 TIGR01854 lipid_A_lpxH UDP-2,3  93.9   0.043 1.1E-06   35.6   2.5   75  184-265    16-96  (241)
 41 PRK07535 methyltetrahydrofolat  93.8     0.7 1.8E-05   27.1   9.8   35  205-242   158-192 (268)
 42 pfam08267 Meth_synt_1 Cobalami  93.5    0.76 1.9E-05   26.8  10.8  163  120-310   137-307 (310)
 43 PRK03170 dihydrodipicolinate s  93.5    0.76 1.9E-05   26.8   8.9   52  185-245    82-133 (292)
 44 PRK13114 consensus              93.3    0.38 9.6E-06   29.0   6.5   63  119-221    73-135 (266)
 45 pfam00290 Trp_syntA Tryptophan  93.3    0.84 2.1E-05   26.5   9.3   22  119-141    69-90  (258)
 46 PRK05222 5-methyltetrahydropte  93.2    0.86 2.2E-05   26.5  13.9  189  133-344   542-750 (756)
 47 PRK13119 consensus              92.9    0.94 2.4E-05   26.2   9.0   63  119-221    75-137 (261)
 48 TIGR00078 nadC nicotinate-nucl  92.9     0.2 5.2E-06   30.9   4.6   64  192-270   199-263 (276)
 49 PRK09282 pyruvate carboxylase   92.8    0.34 8.6E-06   29.3   5.7   70  186-265   155-227 (580)
 50 PRK12999 pyruvate carboxylase;  92.3    0.66 1.7E-05   27.3   6.6  108  155-265   575-764 (1147)
 51 PRK08195 4-hydroxy-2-ketovaler  92.2     0.5 1.3E-05   28.1   5.9   54  187-249   145-199 (337)
 52 PRK13131 consensus              92.1     1.2   3E-05   25.5   9.7   21  120-141    71-91  (257)
 53 KOG2263 consensus               92.0    0.89 2.3E-05   26.3   7.0  159  182-344   582-758 (765)
 54 PRK13123 consensus              91.8     1.3 3.3E-05   25.3  10.2   17  191-207   109-125 (256)
 55 PRK08645 bifunctional homocyst  91.8     1.3 3.3E-05   25.2  13.6  133  192-345   132-290 (608)
 56 PRK13133 consensus              91.7     1.3 3.3E-05   25.2   8.5  104   60-221    35-141 (267)
 57 TIGR03217 4OH_2_O_val_ald 4-hy  91.4    0.51 1.3E-05   28.1   5.2   53  188-249   145-198 (333)
 58 PRK05692 hydroxymethylglutaryl  91.1    0.62 1.6E-05   27.4   5.5   52  189-249   158-209 (287)
 59 PRK08318 dihydropyrimidine deh  91.0     1.3 3.2E-05   25.3   6.9  148  120-270    83-284 (413)
 60 TIGR00693 thiE thiamine-phosph  90.9     1.6   4E-05   24.6   7.8  111  188-318    17-133 (210)
 61 COG0796 MurI Glutamate racemas  90.8    0.91 2.3E-05   26.3   6.1   18  125-144    81-98  (269)
 62 PRK13121 consensus              90.2     1.8 4.5E-05   24.2   9.3   63  119-221    77-139 (265)
 63 PRK13120 consensus              90.0     1.9 4.7E-05   24.1   9.5  109   51-221    31-143 (285)
 64 TIGR01235 pyruv_carbox pyruvat  89.9    0.95 2.4E-05   26.2   5.5  118   67-212   658-792 (1169)
 65 PRK13118 consensus              89.8     1.9 4.9E-05   24.0  10.6   54  119-207    77-130 (269)
 66 PRK00915 2-isopropylmalate syn  89.7    0.99 2.5E-05   26.0   5.5   54  186-248   149-205 (511)
 67 PRK13112 consensus              89.5       2 5.1E-05   23.9  10.1   63  119-221    78-140 (279)
 68 cd04724 Tryptophan_synthase_al  89.5       2 5.2E-05   23.9   9.6   21  119-141    60-80  (242)
 69 TIGR02339 thermosome_arch ther  89.3     2.1 5.3E-05   23.8   7.0  123  169-312   252-389 (522)
 70 PTZ00314 inosine-5'-monophosph  89.0    0.94 2.4E-05   26.2   4.9   67  187-265   238-304 (499)
 71 PRK13113 consensus              89.0     2.2 5.6E-05   23.6   9.7   63  119-221    77-139 (263)
 72 pfam00478 IMPDH IMP dehydrogen  88.8     1.1 2.7E-05   25.8   5.1   67  188-266   224-290 (467)
 73 PRK05567 inositol-5'-monophosp  88.6    0.96 2.4E-05   26.1   4.8   70  186-267   227-296 (486)
 74 TIGR01302 IMP_dehydrog inosine  88.0     1.7 4.4E-05   24.4   5.7   70  253-333   244-333 (476)
 75 PRK12344 putative alpha-isopro  87.9     1.4 3.5E-05   25.1   5.1   48  192-248   164-211 (530)
 76 KOG3253 consensus               87.7     1.9 4.9E-05   24.0   5.8  195  117-329   115-350 (784)
 77 PRK06843 inositol-5-monophosph  87.5     1.3 3.3E-05   25.2   4.9   66  189-266   155-220 (404)
 78 pfam01729 QRPTase_C Quinolinat  87.1     1.1 2.9E-05   25.7   4.3   61  195-270    96-157 (169)
 79 PRK05848 nicotinate-nucleotide  87.1    0.83 2.1E-05   26.6   3.7   64  191-269   193-257 (272)
 80 PRK07428 nicotinate-nucleotide  87.0    0.94 2.4E-05   26.2   3.9   11  260-270   212-222 (285)
 81 TIGR00973 leuA_bact 2-isopropy  86.8     1.8 4.5E-05   24.3   5.2   54  186-248   151-207 (514)
 82 PRK00865 glutamate racemase; P  86.8     2.8 7.2E-05   22.9   6.2  110  196-309   131-251 (262)
 83 PRK09490 metH B12-dependent me  86.7       3 7.6E-05   22.7  12.0   25  181-205   380-404 (1229)
 84 TIGR01769 GGGP geranylgeranylg  86.4     1.3 3.3E-05   25.2   4.4   55  192-258    19-73  (212)
 85 PRK13111 trpA tryptophan synth  86.4     3.1 7.9E-05   22.6   8.9   21  119-141    69-89  (256)
 86 CHL00200 trpA tryptophan synth  86.3     3.1 7.9E-05   22.6   9.7   93   60-207    35-127 (263)
 87 PRK07807 inositol-5-monophosph  86.2    0.92 2.4E-05   26.2   3.5   66  188-265   228-293 (479)
 88 PRK13127 consensus              86.0     3.2 8.2E-05   22.4   9.3   21  119-141    71-91  (262)
 89 PRK09196 fructose-1,6-bisphosp  86.0     1.2 3.1E-05   25.4   4.0  125  168-316   169-327 (347)
 90 PRK12857 putative aldolase; Re  85.7     1.3 3.4E-05   25.1   4.1  126  169-316   152-282 (284)
 91 PRK13129 consensus              85.5     3.4 8.7E-05   22.3   8.8   21  119-141    79-99  (267)
 92 PRK13124 consensus              85.4     3.4 8.7E-05   22.3   8.1   21  119-141    69-89  (257)
 93 PRK08385 nicotinate-nucleotide  84.9       3 7.8E-05   22.6   5.7   17   82-98     55-71  (279)
 94 PRK13136 consensus              84.8     3.6 9.3E-05   22.1   9.5   52  119-207    72-123 (253)
 95 COG0763 LpxB Lipid A disacchar  83.9       4  0.0001   21.8   7.8   23    7-29     19-45  (381)
 96 KOG0369 consensus               83.9     3.9 9.9E-05   21.9   5.8  144  146-292   588-822 (1176)
 97 PRK07896 nicotinate-nucleotide  83.8     1.6   4E-05   24.6   3.8   80  200-291   169-256 (288)
 98 cd01573 modD_like ModD; Quinol  83.7     1.8 4.5E-05   24.2   4.1   17   82-98     52-68  (272)
 99 COG0135 TrpF Phosphoribosylant  83.3     3.5 8.9E-05   22.2   5.4   72  260-344   136-208 (208)
100 PRK09195 gatY tagatose-bisphos  83.2     2.6 6.7E-05   23.1   4.7  121  169-316   152-282 (284)
101 PRK03620 5-dehydro-4-deoxygluc  83.2     4.2 0.00011   21.6  12.1   79  189-277    85-168 (296)
102 cd00954 NAL N-Acetylneuraminic  83.1     4.2 0.00011   21.6  10.5   53  185-245    82-134 (288)
103 PRK06096 molybdenum transport   83.1     1.7 4.4E-05   24.3   3.8   63  192-269   202-265 (284)
104 PRK13135 consensus              83.0     4.3 0.00011   21.5  10.0   61  119-220    77-137 (267)
105 PRK09427 bifunctional indole-3  82.3       4  0.0001   21.8   5.4  145   64-219   130-300 (459)
106 COG0157 NadC Nicotinate-nucleo  82.1     3.7 9.4E-05   22.0   5.2   27  243-270   237-264 (280)
107 cd01572 QPRTase Quinolinate ph  81.8     3.4 8.7E-05   22.3   4.9   41  227-269   169-210 (268)
108 TIGR00677 fadh2_euk methylenet  81.4       2   5E-05   23.9   3.6  107  120-260   121-238 (312)
109 pfam02581 TMP-TENI Thiamine mo  81.4     4.9 0.00013   21.1   8.7   83  190-287    16-99  (180)
110 cd00452 KDPG_aldolase KDPG and  81.1     4.1  0.0001   21.7   5.1  125  120-273    39-176 (190)
111 PRK03512 thiamine-phosphate py  80.6     5.2 0.00013   21.0   8.0   78  189-281    22-100 (211)
112 PRK08185 hypothetical protein;  80.5     2.2 5.7E-05   23.5   3.6  126  169-316   146-278 (283)
113 COG0329 DapA Dihydrodipicolina  80.2     5.4 0.00014   20.9  10.2   22  125-146    61-82  (299)
114 cd01568 QPRTase_NadC Quinolina  80.1     2.2 5.6E-05   23.6   3.4   43  226-270   167-210 (269)
115 cd00947 TBP_aldolase_IIB Tagat  79.9       2 5.2E-05   23.8   3.2  125  169-316   145-276 (276)
116 cd00739 DHPS DHPS subgroup of   79.8     5.5 0.00014   20.8  12.8  144  185-337    23-188 (257)
117 TIGR01768 GGGP-family geranylg  79.3     3.2 8.1E-05   22.5   4.1   52  189-251    17-68  (242)
118 cd02940 DHPD_FMN Dihydropyrimi  79.0     5.8 0.00015   20.6   7.2  113  120-271    83-203 (299)
119 COG0826 Collagenase and relate  78.8     5.2 0.00013   21.0   5.0  170   48-230    72-270 (347)
120 PRK13137 consensus              78.6       6 0.00015   20.6   7.7   61  120-221    85-145 (266)
121 PRK07084 fructose-bisphosphate  78.6       6 0.00015   20.5   5.8  127  170-315   162-318 (321)
122 PRK07998 gatY putative fructos  78.1     3.3 8.4E-05   22.4   3.8  124  170-316   151-279 (283)
123 TIGR00676 fadh2 5,10-methylene  78.0     3.7 9.4E-05   22.0   4.1  105  189-321   176-290 (302)
124 cd02931 ER_like_FMN Enoate red  77.9     4.1 0.00011   21.7   4.3   14  192-205   156-169 (382)
125 PRK07709 fructose-bisphosphate  77.8     3.7 9.3E-05   22.0   4.0  123  169-316   153-283 (285)
126 PRK09389 (R)-citramalate synth  77.6     3.4 8.7E-05   22.3   3.8   52  187-248   143-194 (487)
127 PRK06106 nicotinate-nucleotide  77.5     5.4 0.00014   20.8   4.8   17  252-269   249-265 (281)
128 PRK13140 consensus              77.5     6.4 0.00016   20.3  10.8   53  119-207    74-126 (257)
129 cd00381 IMPDH IMPDH: The catal  77.1     6.5 0.00017   20.3   5.1   14  230-243   126-139 (325)
130 PRK13115 consensus              77.1     6.6 0.00017   20.3  10.0   18  190-207   118-135 (269)
131 cd04722 TIM_phosphate_binding   76.8     6.7 0.00017   20.2   5.7   69  192-270    77-145 (200)
132 cd00950 DHDPS Dihydrodipicolin  76.4     6.9 0.00017   20.1   8.1   52  185-245    81-132 (284)
133 cd00408 DHDPS-like Dihydrodipi  76.4     6.9 0.00017   20.1  11.7   82  186-278    79-168 (281)
134 PRK04180 pyridoxine biosynthes  76.3     6.8 0.00017   20.1   5.0   47  220-270   187-236 (293)
135 pfam01884 PcrB PcrB family. Th  76.2     6.9 0.00018   20.1   7.2   12  137-148    59-70  (231)
136 KOG2550 consensus               76.2     5.9 0.00015   20.6   4.7   67  190-268   254-320 (503)
137 TIGR02317 prpB methylisocitrat  76.1     2.4   6E-05   23.4   2.6  152   82-264    30-227 (287)
138 PRK05742 nicotinate-nucleotide  76.1     6.7 0.00017   20.2   4.9   80  200-291   160-244 (277)
139 pfam03437 BtpA BtpA family. Th  76.0       7 0.00018   20.1  10.5   18  326-343   237-254 (254)
140 TIGR03249 KdgD 5-dehydro-4-deo  75.8     7.1 0.00018   20.0  12.6   91  188-288    88-187 (296)
141 PRK02615 thiamine-phosphate py  75.7     7.1 0.00018   20.0   8.5   85  188-287   157-242 (345)
142 TIGR01271 CFTR_protein cystic   75.4     2.3 5.8E-05   23.5   2.4  169  142-324  1175-1400(1534)
143 TIGR00170 leuC 3-isopropylmala  74.9     1.7 4.4E-05   24.3   1.7   92  191-312   225-332 (472)
144 cd00951 KDGDH 5-dehydro-4-deox  74.8     7.5 0.00019   19.9  11.4   91  189-289    84-183 (289)
145 PRK13139 consensus              74.4     7.7  0.0002   19.8   9.2   62  119-221    76-137 (254)
146 cd07200 cPLA2_Grp-IVA Group IV  74.4     7.7  0.0002   19.8   6.0   17  195-211   341-357 (505)
147 COG0352 ThiE Thiamine monophos  74.3     7.7  0.0002   19.8   7.2   74  190-278    25-99  (211)
148 pfam05913 DUF871 Bacterial pro  74.1     7.8  0.0002   19.7   7.4   15  198-212   211-225 (357)
149 PRK04147 N-acetylneuraminate l  74.1     7.8  0.0002   19.7  10.7   80  185-275    85-172 (294)
150 TIGR01949 AroFGH_arch predicte  73.6       8  0.0002   19.7   9.7  131  196-343   100-250 (259)
151 TIGR00067 glut_race glutamate   73.6     2.8   7E-05   22.9   2.5   26  215-240   154-181 (262)
152 PRK01683 trans-aconitate 2-met  73.6     4.9 0.00013   21.2   3.7   15  298-312   214-228 (252)
153 cd04741 DHOD_1A_like Dihydroor  73.6       5 0.00013   21.1   3.8   25  120-144    73-98  (294)
154 PRK12738 kbaY tagatose-bisphos  73.4     2.9 7.3E-05   22.8   2.5  121  169-316   152-282 (286)
155 PRK08610 fructose-bisphosphate  73.4     8.1 0.00021   19.6   5.4  125  169-316   153-283 (286)
156 cd00564 TMP_TenI Thiamine mono  73.1     8.2 0.00021   19.6   8.3   73  191-278    17-90  (196)
157 pfam01116 F_bP_aldolase Fructo  72.4       4  0.0001   21.8   3.1  126  169-316   150-281 (283)
158 cd00423 Pterin_binding Pterin   72.2     8.6 0.00022   19.4  12.0  144  186-337    24-188 (258)
159 PRK13132 consensus              72.0     8.7 0.00022   19.4   9.3   17  191-207   105-121 (246)
160 PRK08508 biotin synthase; Prov  71.7     8.8 0.00022   19.4   9.2   16  120-135    74-89  (279)
161 PRK05286 dihydroorotate dehydr  71.7     5.7 0.00014   20.7   3.7   18   48-65     11-28  (336)
162 PRK08072 nicotinate-nucleotide  71.6     8.9 0.00023   19.3   4.9   10  260-269   207-216 (277)
163 cd00958 DhnA Class I fructose-  71.1     9.1 0.00023   19.3   8.6  109  195-314    85-209 (235)
164 cd02932 OYE_YqiM_FMN Old yello  71.0     9.1 0.00023   19.3   5.2   45  192-242   160-224 (336)
165 cd04727 pdxS PdxS is a subunit  70.6     8.6 0.00022   19.5   4.4   47  220-270   178-227 (283)
166 PRK13134 consensus              70.6     9.3 0.00024   19.2   9.7   61  119-220    79-139 (257)
167 COG0119 LeuA Isopropylmalate/h  70.4     9.4 0.00024   19.2   5.9   54  187-249   147-201 (409)
168 pfam00701 DHDPS Dihydrodipicol  70.2     9.5 0.00024   19.1  11.6   52  185-245    82-133 (289)
169 PRK12737 gatY tagatose-bisphos  70.1     9.5 0.00024   19.1   5.5  124  169-316   152-282 (284)
170 pfam00682 HMGL-like HMGL-like.  70.1     9.6 0.00024   19.1  12.1   47  194-249   145-191 (237)
171 COG0646 MetH Methionine syntha  69.7     9.7 0.00025   19.1  11.8  186  123-343    95-311 (311)
172 pfam00809 Pterin_bind Pterin b  69.5     9.8 0.00025   19.0  11.6  143  186-337    19-183 (208)
173 KOG1606 consensus               69.5     9.8 0.00025   19.0   7.3   46  221-270   192-240 (296)
174 PRK06543 nicotinate-nucleotide  69.1     6.1 0.00015   20.5   3.4   27  242-269   239-266 (281)
175 PRK07315 fructose-bisphosphate  68.8     3.9 9.9E-05   21.9   2.4  114  197-316   164-291 (293)
176 PRK02506 dihydroorotate dehydr  68.1     7.3 0.00019   19.9   3.6   22  120-142    76-97  (308)
177 COG1646 Predicted phosphate-bi  68.1     7.7  0.0002   19.8   3.7   21  228-249    60-80  (240)
178 pfam01180 DHO_dh Dihydroorotat  68.1     7.9  0.0002   19.7   3.8   23  120-142    76-98  (290)
179 cd00740 MeTr MeTr subgroup of   68.1      10 0.00027   18.8  10.1   25  181-205    21-45  (252)
180 PRK00043 thiE thiamine-phospha  66.8      11 0.00028   18.7   8.6   23  196-221    30-52  (210)
181 PRK09432 metF 5,10-methylenete  66.7      10 0.00026   18.9   4.2  110  187-322   164-278 (296)
182 cd02069 methionine_synthase_B1  66.4      11 0.00028   18.7   4.2   72  192-276   132-209 (213)
183 PRK08255 salicylyl-CoA 5-hydro  66.3      11 0.00029   18.6   5.6   52  192-243   562-627 (770)
184 pfam07745 Glyco_hydro_53 Glyco  66.2      11 0.00029   18.6   7.5  177   76-268     5-205 (332)
185 cd02801 DUS_like_FMN Dihydrour  65.9      12 0.00029   18.5   7.9   90  170-268   104-213 (231)
186 cd02803 OYE_like_FMN_family Ol  65.7      12  0.0003   18.5   5.2   46  192-237   147-205 (327)
187 COG3867 Arabinogalactan endo-1  65.4      12  0.0003   18.5   6.9   92  177-269   147-252 (403)
188 COG2908 Uncharacterized protei  64.9     9.4 0.00024   19.2   3.7   61  185-253    16-81  (237)
189 COG0434 SgcQ Predicted TIM-bar  64.0      12 0.00032   18.3   9.7   31  315-345   227-261 (263)
190 cd00952 CHBPH_aldolase Trans-o  63.8      13 0.00032   18.3  11.3   53  185-245    89-141 (309)
191 PRK11858 aksA trans-homoaconit  63.6      13 0.00032   18.3  13.3   52  188-249   147-198 (378)
192 TIGR00502 nagB glucosamine-6-p  63.5      13 0.00032   18.3   4.4  103  140-262    36-151 (260)
193 PRK07107 inositol-5-monophosph  63.1      12  0.0003   18.5   3.9   13  191-203   246-258 (497)
194 COG2513 PrpB PEP phosphonomuta  62.9      11 0.00028   18.7   3.7   34  185-222   165-198 (289)
195 PRK13399 fructose-1,6-bisphosp  62.8     6.1 0.00016   20.5   2.4  127  168-316   169-327 (347)
196 PRK11613 folP dihydropteroate   62.1      13 0.00034   18.1  11.9   17  189-205    41-57  (282)
197 COG3589 Uncharacterized conser  61.9      14 0.00034   18.1   6.0   22   74-97     51-72  (360)
198 PRK06512 thiamine-phosphate py  61.5      14 0.00035   18.0   8.2   19  260-278    86-105 (221)
199 cd02810 DHOD_DHPD_FMN Dihydroo  61.1      14 0.00036   18.0   7.4  111  120-271    82-199 (289)
200 pfam05853 DUF849 Prokaryotic p  61.1      14 0.00036   18.0   8.8   23  186-208   128-151 (274)
201 cd04740 DHOD_1B_like Dihydroor  59.8      15 0.00037   17.8   4.4   22  121-144    75-96  (296)
202 KOG2918 consensus               59.7     9.7 0.00025   19.1   3.0   17  224-242   233-249 (335)
203 KOG2335 consensus               59.2      15 0.00038   17.7   8.5  122  121-265    86-230 (358)
204 COG0379 NadA Quinolinate synth  59.0      12 0.00031   18.4   3.4  103  125-247   112-218 (324)
205 PRK08904 consensus              58.6      15 0.00039   17.7   5.0  146  119-310    44-204 (207)
206 TIGR01481 ccpA catabolite cont  56.8     3.8 9.6E-05   22.0   0.5   68   67-151   116-190 (332)
207 TIGR00430 Q_tRNA_tgt queuine t  56.6      16 0.00041   17.5   3.7  113  192-311   161-298 (415)
208 cd07202 cPLA2_Grp-IVC Group IV  56.2     9.9 0.00025   19.0   2.6   20  192-211   299-318 (430)
209 cd02903 Macro_BAL_like Macro d  55.8      17 0.00043   17.4   5.0   48  297-344    86-137 (137)
210 PRK09517 multifunctional thiam  55.6      17 0.00044   17.3   7.9   13  299-311   383-395 (738)
211 pfam07021 MetW Methionine bios  55.2      17 0.00044   17.3   3.6   28  242-269    17-44  (193)
212 cd02930 DCR_FMN 2,4-dienoyl-Co  55.1      17 0.00044   17.3   6.9   52  192-243   143-208 (353)
213 PRK05718 keto-hydroxyglutarate  54.7      18 0.00045   17.2   7.6  145  121-312    51-211 (212)
214 PRK08782 consensus              54.3      18 0.00046   17.2   7.2  148  120-313    52-214 (219)
215 cd04733 OYE_like_2_FMN Old yel  53.8      18 0.00046   17.2   5.9   46  192-243   155-220 (338)
216 PRK05414 urocanate hydratase;   53.4      18 0.00047   17.1   7.7  177  124-322   220-443 (558)
217 cd00377 ICL_PEPM Members of th  53.2      19 0.00047   17.1   5.6   13  196-208    94-106 (243)
218 cd00953 KDG_aldolase KDG (2-ke  52.9      19 0.00048   17.1   8.5   95  185-291    77-183 (279)
219 KOG0259 consensus               52.6     8.5 0.00022   19.5   1.7   32  280-312   310-341 (447)
220 TIGR02219 phage_NlpC_fam putat  52.5     6.3 0.00016   20.4   1.0   24   10-33     35-70  (135)
221 COG1759 5-formaminoimidazole-4  52.4      19 0.00049   17.0   5.2   51  262-313   220-283 (361)
222 pfam00838 TCTP Translationally  52.2     8.3 0.00021   19.6   1.6   62  194-256    61-122 (166)
223 PRK13958 N-(5'-phosphoribosyl)  51.7      20  0.0005   16.9  11.1   69  261-345   136-207 (207)
224 COG5012 Predicted cobalamin bi  51.3      20 0.00051   16.9   5.0   59  219-278   165-223 (227)
225 TIGR01304 IMP_DH_rel_2 IMP deh  51.1      20 0.00051   16.9   3.5   71  188-268   145-218 (376)
226 TIGR00655 PurU formyltetrahydr  50.9      18 0.00047   17.1   3.2   41  239-283   223-267 (294)
227 COG2844 GlnD UTP:GlnB (protein  50.8     6.2 0.00016   20.4   0.8  182    5-199   397-607 (867)
228 PRK10550 tRNA-dihydrouridine s  50.7      20 0.00052   16.8   5.3   68  192-268   154-224 (312)
229 TIGR02784 addA_alphas double-s  50.5     4.1  0.0001   21.7  -0.2  201   88-312   290-506 (1190)
230 PRK06857 consensus              50.2      21 0.00053   16.8   6.3  147  120-312    47-208 (209)
231 TIGR00674 dapA dihydrodipicoli  50.0      21 0.00053   16.7   5.3   86  191-288    85-186 (288)
232 PRK10605 N-ethylmaleimide redu  49.3      21 0.00054   16.7   6.2   45  195-239   168-225 (362)
233 PRK07259 dihydroorotate dehydr  49.3      21 0.00054   16.7   4.3   21  189-209   172-192 (301)
234 PRK07695 transcriptional regul  49.2      21 0.00055   16.7  10.5   26  192-220    20-45  (202)
235 PRK10415 tRNA-dihydrouridine s  49.0      22 0.00055   16.6   7.3   90  170-268   114-224 (321)
236 PRK13122 consensus              49.0      22 0.00055   16.6   9.5   52  120-207    60-111 (242)
237 PTZ00151 translationally contr  48.5      10 0.00026   19.0   1.6   60  196-256    67-126 (173)
238 pfam10498 IFT57 Intra-flagella  48.5     4.3 0.00011   21.6  -0.3   40  299-344   300-339 (355)
239 cd00019 AP2Ec AP endonuclease   48.1      22 0.00057   16.5   8.3   27  314-343   252-278 (279)
240 KOG3045 consensus               47.8      16 0.00041   17.5   2.5  152  176-342   110-280 (325)
241 pfam01373 Glyco_hydro_14 Glyco  47.7      22 0.00057   16.5   3.9   16   22-37    100-115 (399)
242 TIGR01880 Ac-peptdase-euk N-ac  47.3      13 0.00032   18.3   1.9   10  124-133   123-132 (433)
243 TIGR01466 cobJ_cbiH precorrin-  47.0     4.5 0.00011   21.4  -0.4  119  120-250    57-197 (254)
244 pfam08444 Gly_acyl_tr_C Aralky  46.7     7.3 0.00019   20.0   0.6   21   17-37      6-33  (89)
245 TIGR00494 crcB crcB protein; I  46.5      21 0.00053   16.7   2.9   49  133-192    58-110 (119)
246 pfam05148 Methyltransf_8 Hypot  46.0      24 0.00061   16.3   5.3  119  217-344    46-171 (214)
247 pfam00697 PRAI N-(5'phosphorib  45.6      24 0.00062   16.3   7.2   68  261-340   127-195 (195)
248 cd04824 eu_ALAD_PBGS_cysteine_  45.3      15 0.00039   17.7   2.1   74  121-211    92-166 (320)
249 TIGR00746 arcC carbamate kinas  45.0      11 0.00028   18.7   1.3  236   78-343    35-292 (321)
250 cd02933 OYE_like_FMN Old yello  44.8      25 0.00063   16.2   3.2   58  181-238   147-217 (338)
251 cd00983 recA RecA is a  bacter  44.8      25 0.00063   16.2   4.9   68  167-244   108-187 (325)
252 PRK00227 glnD PII uridylyl-tra  44.6      10 0.00026   18.9   1.1   42    6-50    334-379 (692)
253 TIGR00977 LeuA_rel 2-isopropyl  44.5      25 0.00064   16.2   3.6   41  187-236   155-195 (543)
254 PRK09197 fructose-bisphosphate  44.0      25 0.00065   16.1   4.4  136  167-316   183-347 (349)
255 TIGR01181 dTDP_gluc_dehyt dTDP  44.0      26 0.00065   16.1   4.1  105  142-248     9-135 (340)
256 PRK13646 cbiO cobalt transport  43.9      16 0.00041   17.5   2.0   84  253-345   188-283 (286)
257 PRK06559 nicotinate-nucleotide  43.6      26 0.00066   16.1   6.5   44  226-270   183-226 (290)
258 KOG2607 consensus               43.0      26 0.00067   16.0   3.1   24  123-146    66-89  (505)
259 COG2185 Sbm Methylmalonyl-CoA   42.0      27  0.0007   15.9   4.4   12  261-272    40-51  (143)
260 TIGR02146 LysS_fung_arch homoc  41.8      28  0.0007   15.9   5.3  146   87-251    33-203 (355)
261 PRK11815 tRNA-dihydrouridine s  41.7      28  0.0007   15.9   6.1   79  187-268   152-233 (333)
262 KOG2708 consensus               41.5       6 0.00015   20.5  -0.5   83  123-222    57-150 (336)
263 PRK00112 tgt queuine tRNA-ribo  41.4      28 0.00071   15.9   8.6   47  228-277   228-275 (366)
264 pfam00154 RecA recA bacterial   41.0      28 0.00072   15.8   4.9   67  168-244   106-184 (322)
265 cd03334 Fab1_TCP TCP-1 like do  40.3      29 0.00074   15.7   3.9  115  178-312   109-243 (261)
266 TIGR03569 NeuB_NnaB N-acetylne  40.2      29 0.00074   15.7   8.7   10  143-152    92-101 (329)
267 COG1038 PycA Pyruvate carboxyl  39.8      29 0.00075   15.7   5.8   48  159-208   581-652 (1149)
268 cd04734 OYE_like_3_FMN Old yel  39.7      30 0.00075   15.7   4.6   52  191-242   146-211 (343)
269 TIGR01036 pyrD_sub2 dihydrooro  39.5     8.1 0.00021   19.6  -0.1   76  147-236   173-248 (370)
270 KOG2794 consensus               39.4      17 0.00044   17.3   1.6   74  120-209   108-181 (340)
271 TIGR01264 tyr_amTase_E tyrosin  39.1      18 0.00047   17.1   1.7   33  279-312   290-322 (415)
272 TIGR02748 GerC3_HepT heptapren  39.1      30 0.00077   15.6   3.3  139  171-343   127-279 (325)
273 PRK13637 cbiO cobalt transport  38.7      31 0.00078   15.6   3.8   78  261-346   195-286 (287)
274 TIGR01582 FDH-beta formate deh  38.6      26 0.00066   16.1   2.4   81  223-317   122-211 (293)
275 PRK05581 ribulose-phosphate 3-  38.6      31 0.00078   15.6   9.5   87  138-258    43-130 (220)
276 COG0269 SgbH 3-hexulose-6-phos  38.5      31 0.00078   15.6   9.5  177  125-344    17-215 (217)
277 PRK13278 purP 5-formaminoimida  38.5      28 0.00072   15.8   2.6   59  251-312   206-277 (356)
278 PRK04452 acetyl-CoA decarbonyl  38.3      31 0.00079   15.5   4.2   25   44-71     69-93  (322)
279 TIGR03573 WbuX N-acetyl sugar   38.2      31 0.00079   15.5   3.5   23  183-205    96-119 (343)
280 COG4106 Tam Trans-aconitate me  38.0      31  0.0008   15.5   4.3   33  166-209   101-133 (257)
281 TIGR01693 UTase_glnD protein-P  37.1     4.8 0.00012   21.2  -1.5   44    5-53    408-459 (903)
282 cd00453 FTBP_aldolase_II Fruct  36.6      32 0.00082   15.4   2.6  134  169-314   178-338 (340)
283 PRK09485 mmuM homocysteine met  36.5      33 0.00084   15.3  12.1  130  192-342   151-308 (308)
284 PRK13946 shikimate kinase; Pro  36.1      33 0.00085   15.3   6.9  168  131-344    15-187 (195)
285 PRK06552 keto-hydroxyglutarate  36.0      34 0.00085   15.3   4.6  146  122-311    50-208 (209)
286 TIGR03617 F420_MSMEG_2256 prob  35.7      34 0.00086   15.3   4.4   46  292-342   272-317 (318)
287 PRK05282 peptidase E; Validate  35.6      34 0.00087   15.2   3.1   10  280-289   200-209 (233)
288 PRK13237 tyrosine phenol-lyase  35.4      34 0.00087   15.2   4.5   33  214-248   313-345 (459)
289 pfam02341 RcbX RbcX protein. T  35.2      35 0.00088   15.2   6.2   75  122-201    17-94  (108)
290 PRK12838 carbamoyl phosphate s  34.8      35 0.00089   15.2   4.5   78  241-326   169-250 (356)
291 PRK06052 5-methyltetrahydropte  34.7      35 0.00089   15.2  14.8  185  130-342   103-340 (343)
292 COG1608 Predicted archaeal kin  34.1      36 0.00091   15.1   6.9  139  177-339    75-242 (252)
293 cd00516 PRTase_typeII Phosphor  34.0      36 0.00092   15.1   6.6   10  261-270   205-214 (281)
294 smart00518 AP2Ec AP endonuclea  33.7      36 0.00093   15.0   8.1   41  202-252   134-177 (273)
295 PRK13238 tnaA tryptophanase; P  33.6      36 0.00093   15.0   5.2   33  214-248   314-346 (461)
296 pfam07555 NAGidase beta-N-acet  33.3      37 0.00094   15.0   6.4  111  171-289    84-219 (306)
297 pfam08610 Pex16 Peroxisomal me  33.1      22 0.00057   16.5   1.4   34  212-248   253-286 (298)
298 TIGR00423 TIGR00423 conserved   33.0      37 0.00095   15.0   4.3   33  118-152    71-105 (331)
299 TIGR01825 gly_Cac_T_rel pyrido  33.0      37 0.00095   15.0   4.0   52  281-343   228-285 (392)
300 cd00946 FBP_aldolase_IIA Class  32.9      38 0.00096   14.9   2.5  136  168-316   179-343 (345)
301 pfam01702 TGT Queuine tRNA-rib  32.7      38 0.00096   14.9   8.5   36  239-277   113-148 (238)
302 PRK00275 glnD PII uridylyl-tra  32.5      25 0.00065   16.1   1.6   58    6-66    412-475 (894)
303 PRK00025 lpxB lipid-A-disaccha  32.4      38 0.00097   14.9   7.7   65    6-73     18-91  (382)
304 TIGR00385 dsbE periplasmic pro  32.1      39 0.00098   14.9   2.9   21  197-217    63-83  (175)
305 PRK01759 glnD PII uridylyl-tra  32.1      32 0.00081   15.5   2.0   58    6-66    396-459 (862)
306 COG0042 tRNA-dihydrouridine sy  31.9      39 0.00099   14.8  10.6  216   20-291    11-251 (323)
307 cd02070 corrinoid_protein_B12-  31.5      39   0.001   14.8   3.4   59  197-268   131-191 (201)
308 PRK00455 pyrE orotate phosphor  31.2      20 0.00051   16.9   0.8   46  146-203    21-66  (200)
309 PRK00694 4-hydroxy-3-methylbut  31.2      40   0.001   14.8  10.7   29  298-326   487-519 (606)
310 pfam00724 Oxidored_FMN NADH:fl  31.2      40   0.001   14.8   3.8   51  192-242   149-213 (336)
311 KOG0628 consensus               31.2      40   0.001   14.8   6.8   38   52-91     87-133 (511)
312 KOG2673 consensus               31.0      28 0.00072   15.8   1.6   28    9-37    189-218 (485)
313 cd04738 DHOD_2_like Dihydrooro  30.9      40   0.001   14.7   6.1   14  258-271   226-239 (327)
314 PRK06978 nicotinate-nucleotide  30.7      41   0.001   14.7   6.1   11  260-270   218-228 (288)
315 cd02068 radical_SAM_B12_BD B12  30.5      41   0.001   14.7   6.2   46  223-268    52-97  (127)
316 COG3195 Uncharacterized protei  30.4      41   0.001   14.7   5.8   67  167-250    66-132 (176)
317 PRK12560 adenine phosphoribosy  30.2      41  0.0011   14.6   2.4   33   51-88     30-62  (184)
318 COG3243 PhaC Poly(3-hydroxyalk  29.8      42  0.0011   14.6   2.4   35  118-152   161-197 (445)
319 pfam01207 Dus Dihydrouridine s  29.4      43  0.0011   14.6   5.6   73  187-268   139-213 (309)
320 TIGR00863 P2X cation transport  29.4      23 0.00057   16.5   0.9   43  245-287   240-283 (377)
321 TIGR02142 modC_ABC molybdate A  29.4      33 0.00083   15.4   1.7   43  207-260   157-199 (361)
322 PRK03059 PII uridylyl-transfer  29.3      31 0.00078   15.6   1.5   58    6-66    393-456 (857)
323 PRK08271 anaerobic ribonucleos  29.3      18 0.00046   17.2   0.4   58  265-326   504-577 (625)
324 cd00245 Glm_e Coenzyme B12-dep  28.9      43  0.0011   14.5   3.1  118  181-312   220-338 (428)
325 cd00003 PNPsynthase Pyridoxine  28.8      44  0.0011   14.5   7.5   91  225-339   111-201 (234)
326 TIGR02151 IPP_isom_2 isopenten  28.8      44  0.0011   14.5   6.3  116  122-243   103-274 (349)
327 cd02196 PurM PurM (Aminoimidaz  28.7      36 0.00091   15.1   1.8   28  318-345   260-287 (297)
328 TIGR00583 mre11 DNA repair pro  28.6      15 0.00037   17.8  -0.2   41    3-48    175-235 (424)
329 TIGR02872 spore_ytvI sporulati  28.5      44  0.0011   14.5   4.2   42  151-196   175-221 (350)
330 cd04735 OYE_like_4_FMN Old yel  28.5      44  0.0011   14.5   4.0   15  192-206   150-164 (353)
331 TIGR00884 guaA_Cterm GMP synth  28.4      19 0.00048   17.0   0.3  187  122-337     2-217 (319)
332 PRK00654 glgA glycogen synthas  28.4     6.7 0.00017   20.2  -2.0   11  135-145   290-300 (476)
333 pfam01738 DLH Dienelactone hyd  28.2      45  0.0011   14.4   4.9   29  122-150    81-113 (216)
334 PRK13533 7-cyano-7-deazaguanin  28.0      45  0.0011   14.4   9.0   30  121-151   201-232 (486)
335 COG3403 Uncharacterized conser  28.0      32 0.00081   15.5   1.4   47  183-229    70-118 (257)
336 PRK06806 fructose-bisphosphate  27.8      45  0.0012   14.4   6.5  123  168-316   149-279 (281)
337 PRK13306 ulaD 3-keto-L-gulonat  27.7      45  0.0012   14.4  11.5   58  272-344   152-214 (216)
338 TIGR02764 spore_ybaN_pdaB poly  27.6      43  0.0011   14.5   2.0  139  168-319    43-191 (198)
339 TIGR01061 parC_Gpos DNA topois  27.5      18 0.00047   17.1   0.1   29   44-84    200-228 (745)
340 TIGR01415 trpB_rel pyridoxal-p  26.9      27  0.0007   15.9   0.9   26  302-327   389-415 (426)
341 cd01473 vWA_CTRP CTRP for  CS   26.9      47  0.0012   14.3   2.4   17  215-231    15-31  (192)
342 pfam00708 Acylphosphatase Acyl  26.8      47  0.0012   14.3   4.2   39  305-343    22-63  (90)
343 TIGR03191 benz_CoA_bzdO benzoy  26.8      47  0.0012   14.2   3.4   59  286-345   359-427 (430)
344 PRK07226 fructose-bisphosphate  26.7      47  0.0012   14.2  12.3  137  193-343   100-253 (266)
345 pfam03562 MltA MltA specific i  26.5      48  0.0012   14.2   2.8   48  137-184    51-106 (113)
346 COG2520 Predicted methyltransf  26.2      43  0.0011   14.5   1.8   52  124-182   177-229 (341)
347 PRK11823 DNA repair protein Ra  26.2      48  0.0012   14.2   2.9   10  227-236   197-206 (454)
348 TIGR01496 DHPS dihydropteroate  26.1      48  0.0012   14.2  10.7  147  186-339    23-196 (268)
349 PRK13277 5-formaminoimidazole-  26.1      48  0.0012   14.2   2.8   58  252-312   213-283 (363)
350 cd06556 ICL_KPHMT Members of t  26.1      49  0.0012   14.2   5.4   40  191-247    94-133 (240)
351 cd04729 NanE N-acetylmannosami  26.0      49  0.0012   14.2   3.8  100  125-267    50-149 (219)
352 PRK01242 rpl39e 50S ribosomal   25.8      33 0.00085   15.3   1.2   31    4-36      9-42  (51)
353 cd00147 cPLA2_like Cytosolic p  25.7      49  0.0013   14.1   4.9   92  140-234    78-174 (438)
354 COG2951 MltB Membrane-bound ly  25.5      50  0.0013   14.1   6.6   35  124-158   172-214 (343)
355 PRK01636 ccrB camphor resistan  25.5      50  0.0013   14.1   3.2   41  141-192    54-96  (118)
356 TIGR01011 rpsB_bact ribosomal   25.3      35 0.00088   15.2   1.2   62   78-145     2-70  (227)
357 PRK09376 rho transcription ter  25.2      50  0.0013   14.1   3.5   40  170-209   207-265 (416)
358 TIGR02279 PaaC-3OHAcCoADH 3-hy  25.2      49  0.0013   14.1   2.0   45  121-168   197-248 (508)
359 COG1407 Predicted ICC-like pho  25.2      50  0.0013   14.1   3.3   39   23-76     34-72  (235)
360 PRK13125 trpA tryptophan synth  25.1      50  0.0013   14.0   7.7   17  191-207    96-112 (247)
361 TIGR01367 pyrE_Therm orotate p  25.1      43  0.0011   14.5   1.7   81  145-247    14-94  (205)
362 COG4912 Predicted DNA alkylati  25.1      32  0.0008   15.5   1.0   60  285-344   147-218 (222)
363 cd00617 Tnase_like Tryptophana  24.5      52  0.0013   14.0   5.3   32  215-248   289-320 (431)
364 PRK11320 prpB 2-methylisocitra  24.5      52  0.0013   14.0   3.8   63    1-63      2-81  (292)
365 pfam07050 consensus             24.5      29 0.00075   15.7   0.7   16  177-192   100-115 (145)
366 pfam04476 DUF556 Protein of un  24.4      52  0.0013   14.0   7.7   66  196-267   141-207 (235)
367 PRK12564 carbamoyl phosphate s  24.3      52  0.0013   13.9   5.1   79  241-326   173-255 (355)
368 PRK09140 2-dehydro-3-deoxy-6-p  24.2      52  0.0013   13.9   4.8  146  121-313    46-204 (206)
369 COG2167 RPL39 Ribosomal protei  24.2      37 0.00093   15.0   1.2   34    4-39      9-45  (51)
370 COG4782 Uncharacterized protei  24.1      53  0.0013   13.9   4.2   67  192-258   137-211 (377)
371 PRK04374 PII uridylyl-transfer  23.9      53  0.0014   13.9   2.2   59    5-67    401-465 (869)
372 PRK13957 indole-3-glycerol-pho  23.6      54  0.0014   13.9   2.4   68  197-279   122-195 (247)
373 PRK06801 hypothetical protein;  23.6      54  0.0014   13.9   2.4  125  170-316   154-284 (286)
374 pfam04072 LCM Leucine carboxyl  23.6      54  0.0014   13.8   3.2   99  236-341    67-174 (175)
375 cd06295 PBP1_CelR Ligand bindi  23.5      36 0.00093   15.0   1.0   14   62-75     59-72  (275)
376 pfam04481 DUF561 Protein of un  23.5      54  0.0014   13.8   3.2  163   43-272    41-218 (243)
377 TIGR01762 chlorin-enz chlorina  23.3      22 0.00056   16.6  -0.1   10  142-152    15-24  (293)
378 COG1010 CobJ Precorrin-3B meth  23.3      21 0.00054   16.7  -0.2   44  198-250   153-197 (249)
379 KOG1436 consensus               23.2      28 0.00071   15.8   0.4   29  196-225   247-275 (398)
380 TIGR01859 fruc_bis_ald_ fructo  23.2      55  0.0014   13.8   4.0  159  125-315   126-336 (339)
381 pfam11823 DUF3343 Protein of u  23.1      55  0.0014   13.8   2.2   27  319-345    37-63  (73)
382 cd04739 DHOD_like Dihydroorota  23.0      55  0.0014   13.8   3.8   22  188-209   177-198 (325)
383 cd02904 Macro_H2A_like Macro d  23.0      55  0.0014   13.8   5.5   10   83-92     15-24  (186)
384 pfam08824 Serine_rich Serine r  22.9      55  0.0014   13.8   2.3   70  123-208     6-76  (159)
385 TIGR01488 HAD-SF-IB HAD-superf  22.8      56  0.0014   13.8   2.0   72  213-291    80-154 (204)
386 pfam02126 PTE Phosphotriestera  22.7      56  0.0014   13.7   6.4  127  183-313   100-248 (308)
387 TIGR00416 sms DNA repair prote  22.6      56  0.0014   13.7   4.2   45  296-341   218-266 (481)
388 COG0770 MurF UDP-N-acetylmuram  22.5      56  0.0014   13.7   5.9   16    6-21      6-21  (451)
389 pfam03608 EII-GUT PTS system e  22.4      46  0.0012   14.3   1.4   31    6-36     51-92  (168)
390 TIGR00336 pyrE orotate phospho  22.4      37 0.00095   15.0   0.9   52  145-209    14-66  (187)
391 KOG1517 consensus               22.1      57  0.0015   13.7   3.4   16    6-21    392-407 (1387)
392 PRK05007 PII uridylyl-transfer  22.1      43  0.0011   14.5   1.2   58    6-66    410-473 (881)
393 TIGR02313 HpaI-NOT-DapA 2,4-di  22.0      57  0.0015   13.6   3.9  170  125-339    57-258 (294)
394 TIGR01265 tyr_nico_aTase tyros  22.0      58  0.0015   13.6   4.0   33  280-313   299-331 (424)
395 PRK00278 trpC indole-3-glycero  21.7      58  0.0015   13.6   2.0   69  197-280   131-205 (261)
396 PRK00311 panB 3-methyl-2-oxobu  21.4      59  0.0015   13.6   4.8  136  124-317   122-258 (266)
397 PRK05872 short chain dehydroge  21.4      51  0.0013   14.0   1.5   44  170-214   100-147 (296)
398 PRK09354 recA recombinase A; P  21.4      59  0.0015   13.6   5.2   69  166-244   112-192 (350)
399 cd01121 Sms Sms (bacterial rad  21.3      47  0.0012   14.2   1.3   17  225-243   188-204 (372)
400 pfam06408 consensus             21.2      60  0.0015   13.5   2.5   18  190-207   187-204 (471)
401 TIGR01836 PHA_synth_III_C poly  21.2      60  0.0015   13.5   3.6   59   83-151   101-161 (367)
402 KOG2700 consensus               21.2      60  0.0015   13.5   4.0   15  139-153   191-205 (481)
403 PRK02048 4-hydroxy-3-methylbut  21.1      60  0.0015   13.5  11.4   88  223-326   432-527 (613)
404 COG0167 PyrD Dihydroorotate de  20.6      61  0.0016   13.5   3.7   89  121-210    79-197 (310)
405 cd02907 Macro_Af1521_BAL_like   20.5      62  0.0016   13.4   4.7   42  180-224    96-139 (175)
406 cd06281 PBP1_LacI_like_5 Ligan  20.4      47  0.0012   14.3   1.1   23   51-74     40-62  (269)
407 cd01218 PH_phafin2 Phafin2  Pl  20.4      62  0.0016   13.4   2.8   12   71-82     23-34  (104)
408 PRK05092 PII uridylyl-transfer  20.3      35  0.0009   15.1   0.4   46    5-53    447-498 (934)
409 KOG2023 consensus               20.2      42  0.0011   14.6   0.8   30  207-236   546-575 (885)
410 cd06296 PBP1_CatR_like Ligand-  20.2      48  0.0012   14.2   1.1   24   51-75     40-63  (270)
411 TIGR03278 methan_mark_10 putat  20.2      63  0.0016   13.4   2.5   11   56-66    153-163 (404)
412 COG4790 EscR Type III secretor  20.1      56  0.0014   13.7   1.4   72  143-224    62-133 (214)
413 pfam03102 NeuB NeuB family. Ne  20.1      63  0.0016   13.4   7.7   13  296-308   217-229 (240)

No 1  
>TIGR01464 hemE uroporphyrinogen decarboxylase; InterPro: IPR006361   This entry represents uroporphyrinogen decarboxylase (HemE), which catalyzes the fifth step in the heme biosynthetic pathway, converting uroporphyrinogen III to coproporphyrinogen III by decarboxylating the four acetate side chains of the substrate . This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.   This activity is essential in all organisms, and subnormal activity of URO-D leads to the most common form of porphyria in humans, porphyria cutanea tarda (PCT).; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin biosynthetic process.
Probab=100.00  E-value=0  Score=966.93  Aligned_cols=336  Identities=45%  Similarity=0.781  Sum_probs=316.8

Q ss_pred             HHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCC
Q ss_conf             99999669989999761462312345799999761553899842799999987212876298726521332001043244
Q gi|254780812|r    7 KILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADALGR   86 (346)
Q Consensus         7 ~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~   86 (346)
                      +||||++|++++||||||||||||||||||++|++++||+|+|+|||+||||||||+||||+|||||||||||||+|||+
T Consensus         1 ~~L~A~~Ge~~~r~PVW~MRQAGRYLPEYr~~R~~~~dF~~~c~~pdla~EvTLQP~rr~g~DAAIlFsDILv~p~alG~   80 (351)
T TIGR01464         1 LFLRAAKGEVVDRPPVWFMRQAGRYLPEYRELRAKAGDFLELCRNPDLAVEVTLQPIRRFGVDAAILFSDILVPPQALGL   80 (351)
T ss_pred             CCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCHHHHHCCCCCEEEEECCCHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf             94433157979597774301534686689999635866688734924178721374535488768881220238400385


Q ss_pred             CEEEECCCCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             3373168875222-3333355420567012344323787778764210245-3201111479999999961246776524
Q gi|254780812|r   87 NVRFVENEGPRMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPN-HITLIGFCGAPWTVASYMISGGFIKDHG  164 (346)
Q Consensus        87 ~v~f~~~~GP~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~-~~pLIGF~GgP~TlasYmieG~~sk~~~  164 (346)
                      +|+|.+|+||+++ |+++.++...... ....+.+++|+|||+++|++|++ ++|||||||||||||||||||||||+|.
T Consensus        81 ~v~f~~G~GP~~~~p~~~~~dv~~l~~-~d~~~~l~yV~~ai~~~r~~L~~~~vpLIGFaGaPwTLasYmIEGggSk~~~  159 (351)
T TIGR01464        81 DVEFVEGKGPVISNPIRTAEDVERLKE-FDPESELSYVYEAIKLLREELDGVEVPLIGFAGAPWTLASYMIEGGGSKDFA  159 (351)
T ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCCCCHH
T ss_conf             168745878716889988666866213-2303301279999999999837788644630686055343010278986779


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC-----C
Q ss_conf             67753013722289999999999999977777549816784383110068356777612722689999863088-----6
Q gi|254780812|r  165 QNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP-----N  239 (346)
Q Consensus       165 ~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~-----~  239 (346)
                      ++|+|||++|+.+|+||++||+.+++||.+||+||||||||||||||.||+++|++||+||+++|++++|++++     +
T Consensus       160 ~~K~f~y~~P~~~~aLl~~Lt~~~~~YL~~Qv~AGA~avQiFDSWag~Ls~~df~~fv~py~~~I~~~vk~~~~e~~~~~  239 (351)
T TIGR01464       160 KAKKFMYEEPEALHALLNKLTDATIEYLSEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLAKIIEEVKKRLPEFVLEN  239 (351)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99998720858999999999999999999988618848999633464479878888508899999999987621257898


Q ss_pred             CEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCC--EEEECCCCHHHHCCCHHHHHHHHHHHHHHHCC--
Q ss_conf             236024311000013420147872230467799899997-0798--46968888467709988999999999997325--
Q gi|254780812|r  240 AKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKE--GPVQGNLDPMRLVVGNQVMIDGVNAILDVLGS--  314 (346)
Q Consensus       240 vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~--~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~--  314 (346)
                      +|+|+|++|+++.++.+.+..++|++|+||++|+.+|++ ++++  ++|||||||..|+++++.++++++++|+.++.  
T Consensus       240 ~P~I~F~~G~g~~l~~~~~~g~~DvvglDW~v~~~~a~~~~~~~kP~~~QGNLDP~~L~~~~~~l~~~~~~~l~~~~~~A  319 (351)
T TIGR01464       240 VPVILFAKGAGHLLEELAETGPADVVGLDWSVDLKEARKRVGDGKPVAIQGNLDPAVLYAPEEALEEKVERILEAFGQEA  319 (351)
T ss_pred             CCEEEECCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             86688528778999999706992088605888989999971799987885643322221898999999999999731257


Q ss_pred             C---CCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9---9289608976336688999999999973
Q gi|254780812|r  315 G---PFIFNLGHGITPQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       315 ~---~~I~nLGhGi~p~tp~eNv~~~v~~vr~  343 (346)
                      +   +|||||||||+|+||+|||++|||+||+
T Consensus       320 gg~~~yIFNLGHGilP~~p~E~v~~lve~Vh~  351 (351)
T TIGR01464       320 GGKSGYIFNLGHGILPETPPENVKALVEYVHS  351 (351)
T ss_pred             CCCCCCEEECCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             89988587657778899897999999998529


No 2  
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=100.00  E-value=0  Score=892.58  Aligned_cols=343  Identities=42%  Similarity=0.742  Sum_probs=325.2

Q ss_pred             CCC-HHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf             976-0579999966998999976146231234579999976155389984279999998721287629872652133200
Q gi|254780812|r    1 MNE-RKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILV   79 (346)
Q Consensus         1 M~~-~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~   79 (346)
                      |+. +|+|||+||+|+++|||||||||||||||||||++|++++||+|+|+|||+|+||||||++|||+||||+|||||+
T Consensus         1 ~~~~~n~~~l~al~g~~~~r~PvW~MRQAGRylpey~~~r~~~~~f~~~c~~pela~evtlqPi~rf~~DAAIlFSDIL~   80 (347)
T PRK00115          1 MTELKNDRFLRALRGEPVDRTPVWMMRQAGRYLPEYRALRAKAGSFLELCKNPELAAEVTLQPVRRYGVDAAILFSDILT   80 (347)
T ss_pred             CCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHCHHHHCCCCCCCCCCCEEE
T ss_conf             97421589999976999999998888346635799999998554699885199999999856499829971136667100


Q ss_pred             CCHHHCCCEEEECCCCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             10432443373168875222-33333554205670123443237877787642102453201111479999999961246
Q gi|254780812|r   80 IADALGRNVRFVENEGPRMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGG  158 (346)
Q Consensus        80 ~~ealG~~v~f~~~~GP~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~  158 (346)
                      +|||||++|+|.+|.||+++ |+++.++.... ......+++++|+|||+++|++|++++|||||||||||||||||||+
T Consensus        81 ~~~alG~~v~f~~g~GP~~~~pi~~~~d~~~l-~~~~~~~~l~~v~eai~~~r~~l~~~~pLIGF~GaPwTLasYmieG~  159 (347)
T PRK00115         81 PPDAMGLDLDFEEGEGPVFENPIRTLADVEKL-PIPDPEEDLPYVLEAVRLLRRELPGEVPLIGFAGSPWTLATYMVEGG  159 (347)
T ss_pred             CHHHHCCCEEECCCCCCCCCCCCCCHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCC
T ss_conf             55981983785689898678776898888633-64256777379999999999972888865764476599999998488


Q ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             77652467753013722289999999999999977777549816784383110068356777612722689999863088
Q gi|254780812|r  159 FIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP  238 (346)
Q Consensus       159 ~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~  238 (346)
                      ++|+|.++++||+++|+.+|+||+++|+++++|+++||+||||+|||||||||+||+++|++|++||+++|++++|++++
T Consensus       160 ~sk~~~~~k~~~~~~p~~~~~ll~~lt~~~i~yl~~Qi~aGAd~iqIFDSwag~L~~~~f~~f~~~~~~~I~~~ik~~~~  239 (347)
T PRK00115        160 GSKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFSLPYMKRIVAELKREGP  239 (347)
T ss_pred             CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             98467999998751999999999999999999999999819987885055334378899999988999999999998389


Q ss_pred             CCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             6236024311000013420147872230467799899997-079846968888467709988999999999997325992
Q gi|254780812|r  239 NAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPF  317 (346)
Q Consensus       239 ~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~  317 (346)
                      ++|+||||||+++.++++.+ +|+||+|+||++|+.+|++ ++++++||||+||..|++++++++++++++|+.++++||
T Consensus       240 ~~piI~f~kg~~~~l~~~~~-~~~d~is~D~~~~l~~a~~~~~~~~~lQGNlDP~~L~~~~e~i~~~~~~il~~~~~~g~  318 (347)
T PRK00115        240 DVPVILFPKGAGELLEAMAE-TGVDAVGLDWTVDLAEARRRVGDKVALQGNLDPAVLLAPPEAIEEEVRAILDAFGGPGH  318 (347)
T ss_pred             CCCEEEECCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf             99879963896056899985-69988962787899999998499817982798688759999999999999997489997


Q ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             8960897633668899999999997306
Q gi|254780812|r  318 IFNLGHGITPQVDPKNVLDLVKTVRSEK  345 (346)
Q Consensus       318 I~nLGhGi~p~tp~eNv~~~v~~vr~~~  345 (346)
                      ||||||||+|+||+|||++||++||+|+
T Consensus       319 IfnLGHGI~P~tp~enV~~~V~~vr~~s  346 (347)
T PRK00115        319 IFNLGHGILPETPPENVKALVEAVHELS  346 (347)
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             9968998498989999999999999856


No 3  
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=100.00  E-value=0  Score=869.59  Aligned_cols=332  Identities=45%  Similarity=0.788  Sum_probs=315.4

Q ss_pred             HHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCCCE
Q ss_conf             99966998999976146231234579999976155389984279999998721287629872652133200104324433
Q gi|254780812|r    9 LEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADALGRNV   88 (346)
Q Consensus         9 l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~~v   88 (346)
                      ||||+|+++|||||||||||||||||||++|+++ ||+|+|+|||+|+||||||++|||+||||+|||||++|||||++|
T Consensus         1 l~al~~~~~~~~PvW~MRQAGRylpey~~~r~~~-~f~~~c~~pe~a~evtlqPi~rf~~DAaIlFSDIL~~~~alG~~v   79 (335)
T cd00717           1 LRALRGEPVDRPPVWFMRQAGRYLPEYRELRAKY-SFLELCKNPELAAEVTLQPVRRFGVDAAIIFSDILVPLEAMGMDV   79 (335)
T ss_pred             CHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHCC-CHHHHHCCHHHHHHHHHCCHHHHCCCEEECCCCCCCCHHHHCCEE
T ss_conf             9131299999999888845662579999988469-999985599999999864098839875750453203649839838


Q ss_pred             EEECCCCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             73168875222-33333554205670123443237877787642102453201111479999999961246776524677
Q gi|254780812|r   89 RFVENEGPRMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNR  167 (346)
Q Consensus        89 ~f~~~~GP~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~  167 (346)
                      +|.+|.||+++ |+++.++... .......+++++|+|||+++|++|++++|||||||||||||||||||+++|+|.+++
T Consensus        80 ~f~~~~GP~~~~pi~~~~d~~~-l~~~~~~~~l~~v~eai~~~r~~L~~~~pLIGF~G~PwTLasYmieG~~sk~~~~~k  158 (335)
T cd00717          80 EFVEGKGPVIPNPIRTEADVDR-LLVPDPEEELSYVYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAK  158 (335)
T ss_pred             EECCCCCCCCCCCCCCHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf             9747978866898889999974-366470656569999999999973888876886387699999998389985579998


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             53013722289999999999999977777549816784383110068356777612722689999863088623602431
Q gi|254780812|r  168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK  247 (346)
Q Consensus       168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~  247 (346)
                      +||+++|+.+++||+++|+++++|+++|++||||+|||||||||.||+++|++|++||+++|++++|+++|++|+||||+
T Consensus       159 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGAd~iqIFDSwag~L~~~~f~~f~~p~~~~I~~~ik~~~~~vpiI~f~~  238 (335)
T cd00717         159 KMMYTDPEAFHALLDKLTDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAK  238 (335)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             77613889999999999999999999999819987885075202068999999899999999999985289997899768


Q ss_pred             CCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCC-CCEEEECCCC
Q ss_conf             1000013420147872230467799899997-0798469688884677099889999999999973259-9289608976
Q gi|254780812|r  248 GAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSG-PFIFNLGHGI  325 (346)
Q Consensus       248 g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~-~~I~nLGhGi  325 (346)
                      |+++.+.++.+ +|+||+|+||++|+.+|++ ++++++||||+||.+|++++++++++++++++.++++ ||||||||||
T Consensus       239 ~~~~~l~~~~~-~~~d~isiD~~~~l~~a~~~l~~~~~lQGNlDP~~L~~~~e~i~~~~~~il~~~~~~~g~IfnLGHGI  317 (335)
T cd00717         239 GAGGLLEDLAQ-LGADVVGLDWRVDLDEARKRLGPKVALQGNLDPALLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGI  317 (335)
T ss_pred             CCHHHHHHHHH-CCCCEEECCCCCCHHHHHHHCCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             85789999986-39877742777898999998199827966898789769999999999999998489998598799986


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q ss_conf             336688999999999973
Q gi|254780812|r  326 TPQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       326 ~p~tp~eNv~~~v~~vr~  343 (346)
                      +|+||+|||++||++||+
T Consensus       318 ~p~tp~enV~~~ve~Vrs  335 (335)
T cd00717         318 LPDTPPENVKALVEAVHS  335 (335)
T ss_pred             CCCCCHHHHHHHHHHHCC
T ss_conf             989899999999999629


No 4  
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=100.00  E-value=0  Score=789.68  Aligned_cols=342  Identities=42%  Similarity=0.717  Sum_probs=322.1

Q ss_pred             CHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCH
Q ss_conf             60579999966998999976146231234579999976155389984279999998721287629872652133200104
Q gi|254780812|r    3 ERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIAD   82 (346)
Q Consensus         3 ~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~e   82 (346)
                      ++|+|||+|++|+++||+|||+|||||||+||||++|+++.||.|+|+|||+|+|+|+||++|||+||||+|||||++++
T Consensus         5 ~~~~~fl~al~g~~vdr~PVw~mrqAgry~pey~~~r~~~~s~~d~~~~~e~~~evtl~p~~~~~~DAailf~DIlv~~~   84 (352)
T COG0407           5 TKNDRFLRALKGKPVDRTPVWMMRQAGRYLPEYRALREKGGSFLEACKNPELAAEVTLQPVRRYGLDAAILFSDILVPPE   84 (352)
T ss_pred             CHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHCCCHH
T ss_conf             31779999974899997887766001245609999987527888885399999999964487729872530012201389


Q ss_pred             HHCCCEEEECCCCCCC-CCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             3244337316887522-233333554205670123443237877787642102453201111479999999961246776
Q gi|254780812|r   83 ALGRNVRFVENEGPRM-DPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIK  161 (346)
Q Consensus        83 alG~~v~f~~~~GP~~-~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk  161 (346)
                      |||++|+|.++.||++ +|+...++............++++|++||+++|+++++++|||||+||||||||||+|||+||
T Consensus        85 alG~~v~f~~~~gP~v~~~~~~~~~~~~~~~~~~~~~~~~~V~~ai~~lrekl~~~~pLIgf~gsP~TlAsymieg~~s~  164 (352)
T COG0407          85 ALGCEVRFGEGKGPSVLKPIRDKEDVELLVPLLDPEGRLPYVLDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSK  164 (352)
T ss_pred             HCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCC
T ss_conf             84975632788799567897866666540577673110179999999999974899972875378799999997689841


Q ss_pred             CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCE
Q ss_conf             52467753013722289999999999999977777549816784383110068356777612722689999863088623
Q gi|254780812|r  162 DHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAK  241 (346)
Q Consensus       162 ~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vp  241 (346)
                      ++.+++.||+++|+.+|+||+++|+.+++|+++|++||||+|||||||+|.|+...|++|++||.++|++.+|+.++++|
T Consensus       165 ~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~p  244 (352)
T COG0407         165 DFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGVP  244 (352)
T ss_pred             CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             18999999987989999999999999999999999818888986335555677425798845679999999887289986


Q ss_pred             EECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHHH-CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCC-CCEE
Q ss_conf             60243110000134201478722304677998999970-798469688884677099889999999999973259-9289
Q gi|254780812|r  242 FISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALEL-QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSG-PFIF  319 (346)
Q Consensus       242 iI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~~-~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~-~~I~  319 (346)
                      +||||+|+++.+..|.+ +|+|++|+||+++++.|++. ++..+|||||||.+|+++++.|+++|+++|+.+.+. ||||
T Consensus       245 ii~f~~ga~~~l~~m~~-~g~d~l~vdw~v~l~~a~~~~~~~~~lqGNldP~lL~~~~~~i~~~~~~iL~~~~~~~~~If  323 (352)
T COG0407         245 VIHFCKGAGHLLEDMAK-TGFDVLGVDWRVDLKEAKKRLGDKVALQGNLDPALLYAPPEAIKEEVKRILEDGGDGSGYIF  323 (352)
T ss_pred             EEEECCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             89977882778999986-28867842135688999998388846883267276359999999999999997546788032


Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             60897633668899999999997306
Q gi|254780812|r  320 NLGHGITPQVDPKNVLDLVKTVRSEK  345 (346)
Q Consensus       320 nLGhGi~p~tp~eNv~~~v~~vr~~~  345 (346)
                      ||||||+|+||+|||++||++||+++
T Consensus       324 nlGhGI~P~tp~e~v~~lve~v~~~~  349 (352)
T COG0407         324 NLGHGILPETPPENVKALVEAVHEYS  349 (352)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             68987699998799999999999863


No 5  
>KOG2872 consensus
Probab=100.00  E-value=0  Score=796.19  Aligned_cols=341  Identities=38%  Similarity=0.674  Sum_probs=327.0

Q ss_pred             CHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCH
Q ss_conf             60579999966998999976146231234579999976155389984279999998721287629872652133200104
Q gi|254780812|r    3 ERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIAD   82 (346)
Q Consensus         3 ~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~e   82 (346)
                      .||++||||++||.+||||||+||||||||||||++|++. ||++.|+|||+|||+||||++||..||||||||||+||.
T Consensus        10 ~kndlllRAakGE~vdrpPvW~MRQAGRYl~eyqel~~k~-~Ff~~c~~~el~~EitlQP~rrF~~DaaIIFSDILvipq   88 (359)
T KOG2872          10 LKNDLLLRAAKGEEVDRPPVWIMRQAGRYLPEYQELRAKQ-DFFETCRNPELACEITLQPLRRFRLDAAIIFSDILVIPQ   88 (359)
T ss_pred             CCCHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHC-CHHHHCCCCCCEEEEECCHHHCCCCCEEEEEECCCCCCH
T ss_conf             7764888874176157883689887410128999998743-498761785333667425233048862688521233705


Q ss_pred             HHCCCEEEECCCCCCC-CCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             3244337316887522-233333554205670123443237877787642102453201111479999999961246776
Q gi|254780812|r   83 ALGRNVRFVENEGPRM-DPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIK  161 (346)
Q Consensus        83 alG~~v~f~~~~GP~~-~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk  161 (346)
                      |||+.|++.++.||+| +|+++.++.+...+......+|.+|.+||+++|.+|++++||||||||||||++|||||||||
T Consensus        89 algm~v~m~egkGP~~p~Plr~~eDl~rl~~~~~~~s~L~yVgdAit~~R~kl~g~vpl~GF~GaPwTlm~YmiEGGgSk  168 (359)
T KOG2872          89 ALGMPVDMVEGKGPVFPEPLRVPEDLKRLRDPEVVESELGYVGDAITLTRQKLDGRVPLIGFVGAPWTLMTYMIEGGGSK  168 (359)
T ss_pred             HCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHEEEECCCCCH
T ss_conf             32960798515688789988897899874268514554026999999999985685642431488743412322078720


Q ss_pred             CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCC-
Q ss_conf             5246775301372228999999999999997777754981678438311006835677761272268999986308862-
Q gi|254780812|r  162 DHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNA-  240 (346)
Q Consensus       162 ~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~v-  240 (346)
                      +|.++|.|++..|+..|+||+++|+++++|+..|+.|||+++||||||||.|||++|++|++||+++|++++|+++++. 
T Consensus       169 t~~~aK~w~~~~Pe~sh~lL~~lTda~v~Yl~~Qv~aGAq~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~  248 (359)
T KOG2872         169 TFTQAKRWLFQYPEVSHALLQILTDAIVEYLVYQVVAGAQALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPELG  248 (359)
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             69999999886848999999999999999999999865799999987615379889988604999999999998615404


Q ss_pred             ----EEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             ----36024311000013420147872230467799899997-0798469688884677099889999999999973259
Q gi|254780812|r  241 ----KFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSG  315 (346)
Q Consensus       241 ----piI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~  315 (346)
                          |+|.|.+|++..++.++. +|+|++|+||.+|+.+|++ +++++++|||+||..|++++|++.+.++++++.++.+
T Consensus       249 ~~~vPmi~fakG~g~~Le~l~~-tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG~~  327 (359)
T KOG2872         249 LAPVPMILFAKGSGGALEELAQ-TGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDFGKS  327 (359)
T ss_pred             CCCCCEEEEECCCCHHHHHHHH-CCCCEEEECCCCCHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf             7777669997686068999873-487477520202678998751783477567784765089899999999999983866


Q ss_pred             CCEEEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             928960897633668899999999997306
Q gi|254780812|r  316 PFIFNLGHGITPQVDPKNVLDLVKTVRSEK  345 (346)
Q Consensus       316 ~~I~nLGhGi~p~tp~eNv~~~v~~vr~~~  345 (346)
                      +||.||||||.|.||+|+|++|+|++|++.
T Consensus       328 ryI~NLGHGi~p~tp~e~v~~f~E~~h~~~  357 (359)
T KOG2872         328 RYIANLGHGITPGTPPEHVAHFVEAVHKIG  357 (359)
T ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             637624787789979799999999999852


No 6  
>pfam01208 URO-D Uroporphyrinogen decarboxylase (URO-D).
Probab=100.00  E-value=0  Score=667.37  Aligned_cols=334  Identities=42%  Similarity=0.685  Sum_probs=303.0

Q ss_pred             CHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCH
Q ss_conf             60579999966998999976146231234579999976155389984279999998721287629872652133200104
Q gi|254780812|r    3 ERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIAD   82 (346)
Q Consensus         3 ~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~e   82 (346)
                      ++++|+++|++|+++||+|||+|||||||+|||+..+.++ +|.|+|+|||+++|+|+||++|||+|++|+||||++++|
T Consensus         1 t~~er~~~al~g~~~Dr~Pv~~~rqagr~~~~~~~~~~g~-~~~e~~~d~e~~ae~~~~~~~~~g~D~~~~~~di~~~~e   79 (337)
T pfam01208         1 TPNERLLRALRGEPVDRVPVWLMRQAGRYLPEYRALRAGA-SFLEACKDPELAAEVTLQPYRRFGLDAAILFSDILVEAE   79 (337)
T ss_pred             CCHHHHHHHHCCCCCCCCCEEECHHCCCCCHHHHHHHCCC-CHHHHHCCHHHHHHHHHHHHHHHCCCEEECCCCEEECHH
T ss_conf             9778999997699899998862010222378999988399-989983799999999999999819765644566022158


Q ss_pred             HHCCCEEEECCCCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             32443373168875222-33333554205670123443237877787642102453201111479999999961246776
Q gi|254780812|r   83 ALGRNVRFVENEGPRMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIK  161 (346)
Q Consensus        83 alG~~v~f~~~~GP~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk  161 (346)
                      |||++|.|.++.||+++ |+.+.++.......+...+++++|+||++++|+++++++|||||+|||||||+||++|    
T Consensus        80 alG~~v~~~~~~~P~v~~~~~~~~d~~~l~~~d~~~~~l~~v~eai~~l~~~l~~~~plig~~~gP~Tla~~l~~G----  155 (337)
T pfam01208        80 AMGCEVDFGEGEGPVVENPIRTPEDVDKLEVPDDEEDRLPYVLEAIRLLRKELGDEVPLIGFVGGPFTLASYLVEG----  155 (337)
T ss_pred             HCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCC----
T ss_conf             6197462169999998887688778986668883011028999999999997599974798647789999999779----


Q ss_pred             CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCE
Q ss_conf             52467753013722289999999999999977777549816784383110068356777612722689999863088623
Q gi|254780812|r  162 DHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAK  241 (346)
Q Consensus       162 ~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vp  241 (346)
                       +.+.+++++++|+.+|++|+++|+.+++|+++|+++|||+|||||||+++||+++|++|++||+++|++++|+.++. |
T Consensus       156 -~~~~~~~l~~~pe~~~~ll~~~t~~~~~~~~~qi~aGad~i~i~Ds~~~~ls~~~~~ef~~p~~~~i~~~ik~~~~~-~  233 (337)
T pfam01208       156 -FEKFKKLMYKDPELVHALLDKLTDAVIEYLKAQIEAGADAIQIFDSWAGLLSPEDFREFVLPYLKRIVDEVKARGPG-P  233 (337)
T ss_pred             -HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-C
T ss_conf             -89999999979999999999999999999999998299679983478887898999999899999999999986899-7


Q ss_pred             EECCCCCCC-CCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCC-CCCEE
Q ss_conf             602431100-0013420147872230467799899997079846968888467709988999999999997325-99289
Q gi|254780812|r  242 FISFAKGAG-YMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGS-GPFIF  319 (346)
Q Consensus       242 iI~f~~g~~-~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~-~~~I~  319 (346)
                      +|+|+||.+ ..++.+.+ +|++++|+||.+|+.++++..++++||||+||.+|++++|+|+++++++|+.+++ +||||
T Consensus       234 ~ilh~cG~~~~~~~~l~~-~~~~~~s~d~~~~l~~~~~~~~~~~i~GN~dp~~l~gt~e~i~~~~~~~l~~~~~~~g~Il  312 (337)
T pfam01208       234 VILHICGNGTPILEDMAE-TGADVISLDWTVDLAEAKRIVGDVALQGNLDPALLLGTPEEIEAEVKEILEAAGGGRGHIF  312 (337)
T ss_pred             EEEEECCCHHHHHHHHHH-CCCCEEECCCCCCHHHHHHHCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             499857966899999986-4988884476568999999769953896898678569999999999999998289999898


Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             6089763366889999999999730
Q gi|254780812|r  320 NLGHGITPQVDPKNVLDLVKTVRSE  344 (346)
Q Consensus       320 nLGhGi~p~tp~eNv~~~v~~vr~~  344 (346)
                      |+||||+|+||+|||++||++||+|
T Consensus       313 ~~Gc~i~~~tp~env~a~v~avr~~  337 (337)
T pfam01208       313 NLGHGIPPDTPPENVKALVEAVHEY  337 (337)
T ss_pred             ECCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             5999899998999999999999609


No 7  
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=100.00  E-value=0  Score=649.93  Aligned_cols=308  Identities=22%  Similarity=0.315  Sum_probs=272.6

Q ss_pred             HHHHCCCCCCCCCCH---------HHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf             999669989999761---------46231234579999976155389984279999998721287629872652133200
Q gi|254780812|r    9 LEVLQGNVINPPPIW---------LMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILV   79 (346)
Q Consensus         9 l~al~g~~~~r~PVW---------~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~   79 (346)
                      |||++||++||+|||         +|||||||+|||+             +|||+++|+|+||++|||+||||+||||++
T Consensus         1 l~Al~ge~~dR~PVw~~~~~g~~~~mrqaGr~lpEy~-------------~~~e~~ae~~l~p~~~~g~Daai~fsDilv   67 (326)
T cd03307           1 LAALNGQPVDRVPVICPTQTGTVELMEATGAYWPEAH-------------SDAEKMADLAAAGHEVAGFEAVRVPFCMTV   67 (326)
T ss_pred             CCCCCCCCCCCCCEECCCCCCHHHHHHHHCCCCHHHH-------------CCHHHHHHHHHHHHHHHCCCEEECCCCHHH
T ss_conf             9300489899999633653328999999389816675-------------699999999970898709986774633212


Q ss_pred             CCHHHCCCEEEECCC-CCCC-C-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             104324433731688-7522-2-333335542056701234432378777876421024532011114799999999612
Q gi|254780812|r   80 IADALGRNVRFVENE-GPRM-D-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMIS  156 (346)
Q Consensus        80 ~~ealG~~v~f~~~~-GP~~-~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmie  156 (346)
                      ++||||++|+|.++. +|.+ + |+.+.++....+..+...+++++|++|++++|+++++++|||||+|||||||+||++
T Consensus        68 ~~ealG~~v~f~~~~~~P~v~~~~i~~~~d~~~l~~~~~~~~~l~~v~eai~~lr~~l~~~vpliGf~g~P~Tla~~l~g  147 (326)
T cd03307          68 EAEALGCEVDWGTKDIQPSVTSHPFKKLEDVEKLPDDFLERGRIPTVLEAIKILKEKYGEEVPVIGGMTGPASLASHLAG  147 (326)
T ss_pred             HHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHC
T ss_conf             08980982340478889856788889999996177654000125899999999999718997669870768999999757


Q ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH--HCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf             4677652467753013722289999999999999977777549816784383110--06835677761272268999986
Q gi|254780812|r  157 GGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG--CLGEHEFENYAARSVGRIISAVR  234 (346)
Q Consensus       157 G~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag--~Ls~~~f~~f~~p~~kkI~~~ik  234 (346)
                         ++++.   ++++++|+.+|+||+++|+.+++|+++|+++|||+|||||||||  +||+++|++|++||+++|++++|
T Consensus       148 ---~~~~~---~~~~~~p~~~~~lL~~itd~~i~~~~~qi~aGad~i~ifDs~a~~~lls~~~f~ef~~p~~~~i~~~i~  221 (326)
T cd03307         148 ---VENFL---KWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELH  221 (326)
T ss_pred             ---HHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             ---59999---999879999999999999999999999998488878863565653458999999999999999999658


Q ss_pred             HHCCCCE-EECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHH-H-CCCHHHHHHHHHHHHH
Q ss_conf             3088623-6024311000013420147872230467799899997-079846968888467-7-0998899999999999
Q gi|254780812|r  235 RKYPNAK-FISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMR-L-VVGNQVMIDGVNAILD  310 (346)
Q Consensus       235 ~~~~~vp-iI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~-L-~~~~e~i~~~~~~~l~  310 (346)
                      .    +| ++|+|++++..++.+.+ +|+|++|+||++|+++|++ +++++++|||+||.. | .+++|+|+++++++++
T Consensus       222 ~----~~~i~h~~G~~~~~~~~~~~-~g~d~is~D~~~~l~~a~~~~~~~~~iqGNldP~~ll~~g~~e~i~~~~~~~l~  296 (326)
T cd03307         222 G----CPTILHICGNTTPILEYIAQ-CGFDGISVDEKVDVKTAKEIVGGRAALIGNVSPSQTLLNGTPEDVKAEARKCLE  296 (326)
T ss_pred             C----CCEEEEECCCHHHHHHHHHH-CCCCEEECCCCCCHHHHHHHCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHH
T ss_conf             9----98278845875889999997-199899668989999999980898169942884898767999999999999997


Q ss_pred             HHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             732599289608976336688999999999973
Q gi|254780812|r  311 VLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       311 ~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~  343 (346)
                      .+   ++||||||||+|+||+|||++||++||+
T Consensus       297 ~g---~~I~nlGhgi~p~tp~env~a~v~avkE  326 (326)
T cd03307         297 DG---VDILAPGCGIAPRTPLANLKAMVEARKE  326 (326)
T ss_pred             CC---CCEEECCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             38---9955898966999899999999998629


No 8  
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=100.00  E-value=0  Score=635.89  Aligned_cols=326  Identities=21%  Similarity=0.288  Sum_probs=279.1

Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEEC
Q ss_conf             97605799999669989999761462312345799999761553899842799999987212876298726521332001
Q gi|254780812|r    1 MNERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVI   80 (346)
Q Consensus         1 M~~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~   80 (346)
                      ||. ++||++|++||++||+|||+|||||  .+|++... . .+|-|.++|||+++|+|+||+++||+|++|+||||+++
T Consensus         3 MT~-~ER~l~al~ge~vDR~Pvw~~~~ag--~~~~m~~~-G-~~~pE~~~~pe~~ae~~l~~~~~~g~D~~~~~~di~~~   77 (339)
T PRK06252          3 LTP-KERLLRALKGKPVDRVPVICVTQTG--TVELMDIS-G-AYWPEAHSDAEKMAKLAIAGYEVAGFEAVRVPFCMTVE   77 (339)
T ss_pred             CCH-HHHHHHHHCCCCCCCCCEECCCCCH--HHHHHHHH-C-CCCHHHHCCHHHHHHHHHHHHHHHCCCEEECHHHHHHH
T ss_conf             985-8999999778989999974354341--89999981-8-87354427999999999727987288734400333334


Q ss_pred             CHHHCCCEEEEC-CCCC-CCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             043244337316-8875-222-3333355420567012344323787778764210245320111147999999996124
Q gi|254780812|r   81 ADALGRNVRFVE-NEGP-RMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISG  157 (346)
Q Consensus        81 ~ealG~~v~f~~-~~GP-~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG  157 (346)
                      +||||++|+|.+ +.+| +.+ |+.+.++....++.+...+++++|++|++++|+++++++|||||+|||||+|+||++ 
T Consensus        78 ~ealG~~v~f~~~~~~p~v~~~~i~~~~d~~~l~~~~~~~~~l~~v~eai~~lk~~l~~~vpligf~ggP~Tla~yl~g-  156 (339)
T PRK06252         78 AEAMGCTVNMGTKDTQPSVTKHPYKKVEDWEKLPDILLEEGRIPVVLEAIKILKEKVGEDVPIIAGMTGPASLASSLAG-  156 (339)
T ss_pred             HHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH-
T ss_conf             9974998775257888988788889999996377677001005999999999999818986179646777999999874-


Q ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH--HCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             677652467753013722289999999999999977777549816784383110--068356777612722689999863
Q gi|254780812|r  158 GFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG--CLGEHEFENYAARSVGRIISAVRR  235 (346)
Q Consensus       158 ~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag--~Ls~~~f~~f~~p~~kkI~~~ik~  235 (346)
                        +++|.   ++++++|+.+|+||+++|+.+++|+++|+++|||+|||||||||  +||+++|++|++||+++|+++++.
T Consensus       157 --~~~~~---~~~~~~pe~~~~ll~~it~~~~~~~~~qi~aGad~i~ifDs~a~~~lls~~~f~ef~~p~~~~i~~~i~~  231 (339)
T PRK06252        157 --VKNFL---KWLIKKPELAHEFIDFVTEACIEYAKAMLEAGADVIAIADPSASPELIGPEMFEEFVLPYLNKICKEVNG  231 (339)
T ss_pred             --HHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             --69999---9998799999999999999999999999982998789715755556769999999989999999997799


Q ss_pred             HCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHH-H-CCCHHHHHHHHHHHHHHH
Q ss_conf             0886236024311000013420147872230467799899997-079846968888467-7-099889999999999973
Q gi|254780812|r  236 KYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMR-L-VVGNQVMIDGVNAILDVL  312 (346)
Q Consensus       236 ~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~-L-~~~~e~i~~~~~~~l~~~  312 (346)
                          .+++|+|+++++.++.+.+ +|+|++|+||++|+++|++ ++++++||||+||.. | .+++|+|+++++++++.+
T Consensus       232 ----~~ilh~~g~~~~~~~~~~~-~g~d~~s~D~~~~l~~a~~~~g~~~~lqGNldP~~ll~~g~~e~i~~~~~~~l~~g  306 (339)
T PRK06252        232 ----PTILHICGDLTSILEELAD-CGFDGISIDEKVSVKQAKENVGNRARLIGNVSTSFTLLNGTPEDVKAEAKACLEDG  306 (339)
T ss_pred             ----CEEEEECCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf             ----8188865861378999996-49999971699999999998189917993689778766899999999999999718


Q ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             259928960897633668899999999997306
Q gi|254780812|r  313 GSGPFIFNLGHGITPQVDPKNVLDLVKTVRSEK  345 (346)
Q Consensus       313 ~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~~~  345 (346)
                      +   +||||||||+|+||+|||++||++||+|+
T Consensus       307 ~---~I~n~Ghgi~p~tp~env~a~v~avr~y~  336 (339)
T PRK06252        307 V---DILAPGCGIAPMTPLENIKAMVEARKEYY  336 (339)
T ss_pred             C---CEEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             9---91689897699989999999999999854


No 9  
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=100.00  E-value=0  Score=636.02  Aligned_cols=297  Identities=21%  Similarity=0.259  Sum_probs=268.9

Q ss_pred             CCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEE-CCCCEECCHHHCCCEEEECCCCCCCC
Q ss_conf             76146231234579999976155389984279999998721287629872652-13320010432443373168875222
Q gi|254780812|r   21 PIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAIL-FSDILVIADALGRNVRFVENEGPRMD   99 (346)
Q Consensus        21 PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIl-FsDIl~~~ealG~~v~f~~~~GP~~~   99 (346)
                      |||.|||||||  |||+.|   ..|.+.|.++++++||||||++|||+||||+ |||||++|+|||++++|.+|+||++.
T Consensus         1 p~~~~~~~~~~--~~~e~~---~~~~~~~~~~~~~~~iTl~p~~rf~~DAaIiffsDIL~ip~AlG~~v~f~~g~GP~~~   75 (306)
T cd00465           1 PVQCEGQTGIM--EASETM---AISEEPGETSKAEWGITLVEPEEIPLDVIPVHEDDVLKVAQALGEWAFRYYSQAPSVP   75 (306)
T ss_pred             CCCHHHHCCCC--CHHHHH---CCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCEECHHHCCCCEEEEECCCCCCC
T ss_conf             92011001555--254543---2677767898654238731510168885665388602187681995479507589899


Q ss_pred             CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             33333554205670123443237877787642102453201111479999999961246776524677530137222899
Q gi|254780812|r  100 PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNW  179 (346)
Q Consensus       100 p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~  179 (346)
                      .....          ....++.+|+++++.+|++  .++||||||||||||||||+||+++|+      |+|++|+.+|+
T Consensus        76 ~~~~~----------~~~~~l~~v~~~i~~~~~~--~~vpLIGFaGaPwTla~Ymieg~~sk~------~~~~~pe~~~~  137 (306)
T cd00465          76 EIDEE----------EDPFREAPALEHITAVRSL--EEFPTAGAAGGPFTFTHHSMSMGDALM------ALYERPEAMHE  137 (306)
T ss_pred             CCCCC----------HHHHHHHHHHHHHHHHHHC--CCCCEEEECCCHHHHHHHHHCCCHHHH------HHHHCHHHHHH
T ss_conf             87740----------5666447899999998635--786237645865999999983810899------98879999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH----HCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHH
Q ss_conf             99999999999977777549816784383110----06835677761272268999986308862360243110000134
Q gi|254780812|r  180 LLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG----CLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKN  255 (346)
Q Consensus       180 ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag----~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~  255 (346)
                      ||+++|+.+++|+++|++||||+|||||||||    .|++++|++|++||+++|++..+.  +++|+|+|+||.+..+.+
T Consensus       138 LL~~lt~~~i~yl~~Qi~aGAdavqiFDSWag~~~~~L~p~~~~~f~lp~~~~I~~~~~~--~~vPiI~F~~G~~~~~l~  215 (306)
T cd00465         138 LIEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAA--GEVPIVHHSCYDAADLLE  215 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEECCCHHHHHH
T ss_conf             999999999999999998488999974343342311039999999999999999997457--999889983286677899


Q ss_pred             HHCCCCCCEEECCCCC-CHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC--H
Q ss_conf             2014787223046779-9899997-0798469688884677099889999999999973259928960897633668--8
Q gi|254780812|r  256 YRRLTDSNAIGLDWSV-PLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVD--P  331 (346)
Q Consensus       256 ~~~~~g~d~isiD~~~-dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp--~  331 (346)
                      ++..+|+|++|+||++ |+.++++ ++++++|||||||..|++++|.++++|+++|+.++ .+|||||||||.|+|+  |
T Consensus       216 ~~~~~g~d~i~lD~~~~d~~~a~~~~~~~~~lQGNLDP~~L~~~~e~i~~~v~~il~~~g-~~~IfNLGHGi~P~~d~~p  294 (306)
T cd00465         216 EMIQLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATDEECIAKVEELVERLG-PHYIINPDCGLGPDSDYKP  294 (306)
T ss_pred             HHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCCCHHHCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCH
T ss_conf             998619867997367778999999818991587089846765998999999999999848-9877978998899999981


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999973
Q gi|254780812|r  332 KNVLDLVKTVRS  343 (346)
Q Consensus       332 eNv~~~v~~vr~  343 (346)
                      |||++||++||+
T Consensus       295 e~v~~~v~~V~e  306 (306)
T cd00465         295 EHLRAVVQLVDE  306 (306)
T ss_pred             HHHHHHHHHHCC
T ss_conf             799999998549


No 10 
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=100.00  E-value=0  Score=588.17  Aligned_cols=318  Identities=24%  Similarity=0.387  Sum_probs=282.5

Q ss_pred             HHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCCCEE
Q ss_conf             99669989999761462312345799999761553899842799999987212876298726521332001043244337
Q gi|254780812|r   10 EVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADALGRNVR   89 (346)
Q Consensus        10 ~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~~v~   89 (346)
                      .|++|+++||+|||+|||||  .+||+.+     +|.|+|+|||+++|+|++|+++|++||+|+||||++++||||++++
T Consensus         2 aAl~g~~~DRvPv~~~~~~~--~~e~~g~-----~~~e~~~d~~~~~e~~~~~~~~~~~D~~~i~~Di~~~~ea~G~~~~   74 (330)
T cd03465           2 AALNGEKPDRVPVGPLLHGG--AAEFIGI-----SLKEYYTDPELGAEAQIALYKKFGPDAIKVFSDLFVEAEAFGAEIR   74 (330)
T ss_pred             HHHCCCCCCCCCEEEECCCC--HHHHHCC-----CHHHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCEEE
T ss_conf             21164999988578866676--5988678-----8988866999999999999998098889705640267998497377


Q ss_pred             EECCCCCCCC-CC-CCH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             3168875222-33-333-55420567012344323787778764210245320111147999999996124677652467
Q gi|254780812|r   90 FVENEGPRMD-PI-TTQ-EIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQN  166 (346)
Q Consensus        90 f~~~~GP~~~-p~-~~~-~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~  166 (346)
                      |.++.||.+. +. ... +......+.....+++.++++|++++++++++++|+|||+|||||+|+||++      +.+.
T Consensus        75 ~~~~~~P~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~eai~~l~~~~~~~~plig~~ggP~Tla~~l~g------~~~~  148 (330)
T cd03465          75 YPEDDTPSVEGPLIEDEEEDDDLLPPDPGDSPRLPELLEAIRLLKEELGDRVPVIGAVGGPFTLASLLMG------ASKF  148 (330)
T ss_pred             ECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHCC------HHHH
T ss_conf             6799898778888887888863379962255569999999999999728987479755657999887318------4899


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH--HCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC
Q ss_conf             753013722289999999999999977777549816784383110--068356777612722689999863088623602
Q gi|254780812|r  167 RVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG--CLGEHEFENYAARSVGRIISAVRRKYPNAKFIS  244 (346)
Q Consensus       167 ~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag--~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~  244 (346)
                      +++++++|+.+|++|+++|+.+++|+++|+++|||+|||||||+|  +||+++|++|++||+++|+++++++  +.|+++
T Consensus       149 ~~~l~~~p~~~~~ll~~~t~~~~~~~~~qi~aGad~i~i~d~~a~~~~ls~~~f~~f~~p~~k~i~~~~~~~--~~~~il  226 (330)
T cd03465         149 LMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL--GGPVIH  226 (330)
T ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCEEE
T ss_conf             999997999999999999999999999999639988998356666556999999999899999999997754--998367


Q ss_pred             CCC-CCCCCHHHHHCCCCCCEEECCCCCCHHHHHHH-CCCEEEECCCCHH-HH-CCCHHHHHHHHHHHHHHHCC--CCCE
Q ss_conf             431-10000134201478722304677998999970-7984696888846-77-09988999999999997325--9928
Q gi|254780812|r  245 FAK-GAGYMLKNYRRLTDSNAIGLDWSVPLSFALEL-QKEGPVQGNLDPM-RL-VVGNQVMIDGVNAILDVLGS--GPFI  318 (346)
Q Consensus       245 f~~-g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~~-~~~~~lqGNldP~-~L-~~~~e~i~~~~~~~l~~~~~--~~~I  318 (346)
                      |.| +....++.+.+ ++++++|+||.+|+.++++. ++++++|||+||. +| .+++|+++++++++++.+++  ++||
T Consensus       227 h~~g~~~~~l~~~~~-~~~~~~~~d~~~~l~~~~~~~~~~~~i~Gnldp~~~l~~gt~e~i~~~v~~~l~~~~~~~~g~I  305 (330)
T cd03465         227 HNCGDTAPILELMAD-LGADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYI  305 (330)
T ss_pred             ECCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             407862879999986-5888898588899999999809992588179878987579999999999999998537999989


Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9608976336688999999999973
Q gi|254780812|r  319 FNLGHGITPQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       319 ~nLGhGi~p~tp~eNv~~~v~~vr~  343 (346)
                      ||+||||+|+||+|||++||++||+
T Consensus       306 ~~~G~gi~~~tp~env~a~v~avre  330 (330)
T cd03465         306 LSSGCEIPPDTPIENIKAMIDAVRE  330 (330)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             8189987999999999999999629


No 11 
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family; InterPro: IPR006360   This entry represents a methyltransferase domain found in proteins which are involved in C1 metabolism in methanogenic archaea and methylotrophic bacteria. It is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (4.1.1.37 from EC).   In methanogens, this domain is found in single-domain proteins catalysing the transfer of the methyl group of methylcobalamin to coenzymeM . In Methanosarcina barkeri these proteins have been shown to be involved in methanogenesis from C1 compounds such as methylamine and dimethylsulphide ,  CH3-cob(III)alamin + coenzymeM --> cob(I)alamin + CH3-coenzymeM    In methylotrophic bacteria, this domain is found at the N-terminus of the bifunctional corrinoid-binding CmuA protein, which is involved in chloromethane utilisation. The pathway of chloromethane utilisation allows the microorganisms that possess it to grow with chloromethane as the sole carbon and energy source. It is initiated by a corrinoid-dependent methyltransferase system involving methyltransferase I (CmuA) and methyltransferase II (CmuB), which transfer the methyl group of chloromethane onto tetrahydrofolate . The methyl group of chloromethane is first transferred by the protein CmuA to its corrinoid moiety, from where it is transferred to tetrahydrofolate by CmuB, thereby yielding methyltetrahydrofolate , .  CH3Cl + cob(I)alamin ---> CH3-cob(III)alamin + Cl- ; GO: 0008168 methyltransferase activity, 0006730 one-carbon compound metabolic process.
Probab=100.00  E-value=0  Score=418.81  Aligned_cols=321  Identities=20%  Similarity=0.299  Sum_probs=280.5

Q ss_pred             CCCHHHHHHHHHCCCCCCCCCC---------HHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf             9760579999966998999976---------1462312345799999761553899842799999987212876298726
Q gi|254780812|r    1 MNERKQKILEVLQGNVINPPPI---------WLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAA   71 (346)
Q Consensus         1 M~~~~~~~l~al~g~~~~r~PV---------W~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~Daa   71 (346)
                      ||. ++||++|+.+++||+.|+         -.||..|.||||       +|.      |+|++|.++..+++-+|+||+
T Consensus         3 ~T~-~~Rl~aAv~~~~vD~~p~~~~~~~~~~e~m~~~ga~wp~-------Ah~------d~e~mA~la~a~y~~~G~eav   68 (350)
T TIGR01463         3 MTP-KERLLAAVEGQRVDKVPPCVPTQTLTVELMEECGATWPE-------AHR------DAELMAKLAIAAYEVVGLEAV   68 (350)
T ss_pred             CCH-HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCH-------HHC------CHHHHHHHHHHCCCCCCEEEE
T ss_conf             763-469999960798997565310267899999870863423-------205------756419998602402120566


Q ss_pred             EECCCCEECCHHHC-CCEEEEC-CCCCCC--CCCCCHHHHHCCCC-C---HHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             52133200104324-4337316-887522--23333355420567-0---123443237877787642102453201111
Q gi|254780812|r   72 ILFSDILVIADALG-RNVRFVE-NEGPRM--DPITTQEIYLLNPN-I---DLFLNYLLPIFQSISILRKKLPNHITLIGF  143 (346)
Q Consensus        72 IlFsDIl~~~ealG-~~v~f~~-~~GP~~--~p~~~~~~~~~~~~-~---~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF  143 (346)
                      ++-.||.++.|+|| |++++.+ +.+|.+  +|...+..+...++ .   ....+|.+-|++||+.++++.++++|+||-
T Consensus        69 r~~~Dl~~~~E~~gGC~l~~~~~~~QPSv~~~P~~~~~~~~~~~~~y~reG~~~~ri~~vL~a~~~l~~r~~~~~p~i~~  148 (350)
T TIGR01463        69 RPPFDLTVEAEVLGGCELDYGKKARQPSVTKSPAPKNLADLEYPENYLREGLKEGRIPVVLEAIKILRERYGDELPIIGS  148 (350)
T ss_pred             ECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             32746403103652332367875568870138887785541316776020013475366789999999963886041688


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH--HCCHHHHHHH
Q ss_conf             47999999996124677652467753013722289999999999999977777549816784383110--0683567776
Q gi|254780812|r  144 CGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG--CLGEHEFENY  221 (346)
Q Consensus       144 ~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag--~Ls~~~f~~f  221 (346)
                      ++||||+|+.|+   |+++|.   +|+.++||.+++++|..+|+.+.|+++|+++|||++.|.||.||  +|||+.|++|
T Consensus       149 ~~gP~t~A~~~~---~~~~f~---~~~~~~~d~~~~~~e~a~d~~~aya~~m~e~Gadv~~i~DP~aS~dL~~petY~~F  222 (350)
T TIGR01463       149 MEGPFTLAQDLI---GVEEFL---KWISTDPDLAKAVLELALDFVIAYAKAMVEAGADVIAIADPVASSDLISPETYKEF  222 (350)
T ss_pred             CCCHHHHHHHHH---CHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHH
T ss_conf             866466776640---458886---30368645799999998899999999888725204311576667000571456863


Q ss_pred             HCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCC-HHHHHH-HCCCEEEECCCCHHH--HCC-
Q ss_conf             127226899998630886236024311000013420147872230467799-899997-079846968888467--709-
Q gi|254780812|r  222 AARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVP-LSFALE-LQKEGPVQGNLDPMR--LVV-  296 (346)
Q Consensus       222 ~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~d-l~~a~~-~~~~~~lqGNldP~~--L~~-  296 (346)
                      ++||.||+++++|+-. .+-+.|.|+.++..|.+|.+ +|++++|+|..++ ...+++ +++++.|.|||||..  +.| 
T Consensus       223 ~lp~~kr~~~~~KEi~-~~~~lHiCg~t~~~L~~i~~-~G~~~~s~d~~~g~~~~~~~v~G~~~~l~G~L~~~~~l~~GW  300 (350)
T TIGR01463       223 VLPYQKRLVAEIKEID-GITVLHICGKTQKILRDIAK-SGVEGFSVDEKPGIVAEAKKVIGDEASLVGNLDPVSTLLNGW  300 (350)
T ss_pred             CCHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHH-CCCCCCCCCCCCCHHHHCCHHCCCEEEEEECCCHHHHCCCCC
T ss_conf             1417888987621126-86688403771456788986-488743255656677761120387269975367587537888


Q ss_pred             ---CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             ---98899999999999732599289608976336688999999999973069
Q gi|254780812|r  297 ---GNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSEKI  346 (346)
Q Consensus       297 ---~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~~~~  346 (346)
                         ++|+|++.+++++..+.+   |+..||||.+.||.||++++|++.+|++.
T Consensus       301 ttd~~~~v~~~a~~~~~~G~~---iv~~GCdi~~~tp~eNLka~v~a~~~~~~  350 (350)
T TIGR01463       301 TTDTPEKVKKLAKEVLENGVD---IVAPGCDISFMTPLENLKAMVEACKEIKY  350 (350)
T ss_pred             CCCCHHHHHHHHHHHHHCCCE---EEECCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             668578999999999876972---88604777548855899999999731589


No 12 
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=100.00  E-value=2.7e-44  Score=332.00  Aligned_cols=328  Identities=16%  Similarity=0.179  Sum_probs=242.9

Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEEC
Q ss_conf             97605799999669989999761462312345799999761553899842799999987212876298726521332001
Q gi|254780812|r    1 MNERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVI   80 (346)
Q Consensus         1 M~~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~   80 (346)
                      +.++.+|+..|++|+++||.||-.|=  |-+.+.|    ..+ ++.|+.+||++++|......++|++|++.++.+.-..
T Consensus         2 ~~Er~eR~~~a~~g~~pDRVPv~~~~--~~~~~~~----~G~-~~~e~~~d~~k~aea~~k~~~~f~~D~~~~~~~l~~~   74 (378)
T cd03308           2 YQERVQRLKDAIEGKKPDRVPILSQF--TEWFIQY----AGM-TLKEAQWDTDKLEEAYDKVLKDFDFDITPGSASLRPP   74 (378)
T ss_pred             CHHHHHHHHHHHCCCCCCCEEEECCC--HHHHHHH----CCC-CHHHHCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHH
T ss_conf             17899999999769999724020110--0677877----585-2999806999999999999985387515304442307


Q ss_pred             C--HHHCCCEEEECCCC----CCCCCCCC-HHHHHCCCCCHH---------H--------HHHHHHHHHHH---------
Q ss_conf             0--43244337316887----52223333-355420567012---------3--------44323787778---------
Q gi|254780812|r   81 A--DALGRNVRFVENEG----PRMDPITT-QEIYLLNPNIDL---------F--------LNYLLPIFQSI---------  127 (346)
Q Consensus        81 ~--ealG~~v~f~~~~G----P~~~p~~~-~~~~~~~~~~~~---------~--------~~~l~~v~eAi---------  127 (346)
                      +  ||||.++.+.++.+    |...++.. ++.+.+..+.-.         .        .++.....++.         
T Consensus        75 ~~~ealG~k~~~~~~~~~~~~~~~~~~m~~deyd~li~dP~~~~~~~~lpr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  154 (378)
T cd03308          75 SFYQALGSKNFKMSSGGFLQHPEVYEYMEADEYDEFIADPYDFIVEKILPRIYKELAEDPAEKSLALAKAAAAFVDYNNT  154 (378)
T ss_pred             HHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             89997057331168887677862001247566645302877752010010455540566312249999999998764103


Q ss_pred             ------HHHHHCCCCCCHHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             ------764210245320111147999-9999961246776524677530137222899999999999999777775498
Q gi|254780812|r  128 ------SILRKKLPNHITLIGFCGAPW-TVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGV  200 (346)
Q Consensus       128 ------~~~k~~l~~~~pLIGF~GgP~-TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGa  200 (346)
                            ++.+++++..+++-||+.||| |+++++.   |   +......++++||.+|++++.+|+..++|+.+|+.++.
T Consensus       155 ~~~~~~~i~~~~~G~~~~~~~~~~~Pf~tla~~LR---G---~~~~~~Dl~r~Pe~V~~a~e~it~~~i~~~~~~~~~~~  228 (378)
T cd03308         155 NGPIGAKLAEKEYGTPLNAGGVSEAPFDIIGDYLR---G---FKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPY  228 (378)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHH---H---HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             57899999887608753446524166888999997---6---89999999979899999999999999999975321357


Q ss_pred             C-EEEECC--CCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCC-CEEECCCCCCHHHH
Q ss_conf             1-678438--3110068356777612722689999863088623602431100001342014787-22304677998999
Q gi|254780812|r  201 D-VIQIFD--THAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDS-NAIGLDWSVPLSFA  276 (346)
Q Consensus       201 d-~iqIFD--s~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~-d~isiD~~~dl~~a  276 (346)
                      + .+.+++  +.++.|||++|++|++||+||+++++++++ ..+.+|+|++.+..++.+.++... ...++| ..|+.++
T Consensus       229 ~~~~~~~~p~~~~~~ispkqfeeF~~Pylkkl~~~i~~~G-~~~~lh~~G~~~~~~e~l~elp~~~~~~~~~-~~D~~ea  306 (378)
T cd03308         229 PGPVFTPIPLHLPPFLRPKQFEKFYWPSFKKVVEGLAARG-QRIFLFFEGDWERYLEYLQELPKGKTVGLFE-YGDPKKV  306 (378)
T ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHCCCCCEEEECC-CCCHHHH
T ss_conf             8615740555554558999988862065999999999669-8059996687077999998523576243148-8999999


Q ss_pred             HH-HCCCEEEECCCCHHHH-CCCHHHHHHHHHHHHHHHC-CCCCEEEECCCC--CCCCCHHHHHHHHHHHHH
Q ss_conf             97-0798469688884677-0998899999999999732-599289608976--336688999999999973
Q gi|254780812|r  277 LE-LQKEGPVQGNLDPMRL-VVGNQVMIDGVNAILDVLG-SGPFIFNLGHGI--TPQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       277 ~~-~~~~~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~-~~~~I~nLGhGi--~p~tp~eNv~~~v~~vr~  343 (346)
                      ++ +++++||+||+.|..| +|++|+|.++++++|+..+ ++|||++.||+|  +.++|+|||+|+++++|+
T Consensus       307 Ke~lGd~~~I~GnvP~~~L~~GTpeeV~~~~k~~id~~~~~gGfIl~~gc~i~~p~~~~~ENi~A~~ea~re  378 (378)
T cd03308         307 KEKLGDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDAKPENLIAVIEFVRE  378 (378)
T ss_pred             HHHHCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             998599489987998799710999999999999999728999889708976558999987999999998609


No 13 
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=99.62  E-value=7.1e-14  Score=118.32  Aligned_cols=192  Identities=15%  Similarity=0.184  Sum_probs=157.6

Q ss_pred             HHHHHH-HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEECCCCHH----H
Q ss_conf             011114-799999999612467765246775301372228999999999999997777754-9816784383110----0
Q gi|254780812|r  139 TLIGFC-GAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA-GVDVIQIFDTHAG----C  212 (346)
Q Consensus       139 pLIGF~-GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a-Gad~iqIFDs~ag----~  212 (346)
                      -+.+|+ +|+|+-+.++.+      ++.....++++||..|+|++.+|+..+++.+.++++ -.|++...|-|++    .
T Consensus       113 ~i~~~~~~g~fe~~~~~~~------~e~al~~l~~epea~~el~d~~~d~~l~~~~~~i~~l~pD~i~~hDD~G~q~~~f  186 (321)
T cd03309         113 VIDVPLPGGVFERFRLRMS------MEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSF  186 (321)
T ss_pred             EECCCCCCCHHHHHHHHCC------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf             6615679873999998623------9999999985869999999899998768999999851998798526344556752


Q ss_pred             CCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC-CCCHHHHHCCCCCCEEECCCCC-CHHHHHH-HCCCEEEECCC
Q ss_conf             6835677761272268999986308862360243110-0001342014787223046779-9899997-07984696888
Q gi|254780812|r  213 LGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA-GYMLKNYRRLTDSNAIGLDWSV-PLSFALE-LQKEGPVQGNL  289 (346)
Q Consensus       213 Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~-~~~l~~~~~~~g~d~isiD~~~-dl~~a~~-~~~~~~lqGNl  289 (346)
                      +||++|++|.+|++|||++.+|+.+ +.++.||+||. -..+++|++ .|+|+..++... ++.+.++ ++++++++|.+
T Consensus       187 ~Sp~~fr~fi~P~~kri~~~~rs~~-~~~i~~Hscg~a~~lv~~m~e-mGvd~~n~~~~~n~~~~l~~~~g~ki~~~g~~  264 (321)
T cd03309         187 ISPATFREFILPRMQRIFDFLRSNT-SALIVHHSCGAAASLVPSMAE-MGVDSWNVVMTANNTAELRRLLGDKVVLAGAI  264 (321)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHH-HCHHHHHHHHHCCCHHHHHHHCCCCEEEECCC
T ss_conf             6989999986088999999999616-836888621548887699998-56698852111243999999748746997341


Q ss_pred             CHHHH-CCCH-HHHHHHHHHHHHHHCC-CCCEEEECCCCCCCCCHHHHHHHH
Q ss_conf             84677-0998-8999999999997325-992896089763366889999999
Q gi|254780812|r  290 DPMRL-VVGN-QVMIDGVNAILDVLGS-GPFIFNLGHGITPQVDPKNVLDLV  338 (346)
Q Consensus       290 dP~~L-~~~~-e~i~~~~~~~l~~~~~-~~~I~nLGhGi~p~tp~eNv~~~v  338 (346)
                      |-..| +.++ |+..+.+.+....... +++|...--|.+-.+-++-++..-
T Consensus       265 d~~~ld~~~~~e~~~~~v~~~~~e~~~~~~~I~~~t~~~p~~~~~~~~~~~s  316 (321)
T cd03309         265 DDVALDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLPFSIFPEVLRRVS  316 (321)
T ss_pred             CHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             0433077766166799999999973578603433235787655768999877


No 14 
>PRK00957 methionine synthase; Provisional
Probab=98.63  E-value=1.7e-06  Score=66.55  Aligned_cols=189  Identities=16%  Similarity=0.149  Sum_probs=127.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHH
Q ss_conf             32011114799999999612467765246775301372228999999999999997777754981678438311006835
Q gi|254780812|r  137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEH  216 (346)
Q Consensus       137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~  216 (346)
                      +.++=+..-||.|++..+.-   ..+       .|.+. .-.+++.-++.+..+-+++..++|++.|||=|+.-..-  -
T Consensus       108 ~~~vK~~l~gP~tl~~~~~~---~~~-------~Y~d~-~~ee~~~dla~al~~Ei~~l~~aG~~~IQiDEP~l~~~--~  174 (307)
T PRK00957        108 EKGVKGIITGPSTLAYSLRI---ETN-------FYSDN-KDEELIYDLARALAKEALALQKAGAAMIQIDEPILSTG--A  174 (307)
T ss_pred             CCCEEEEECCHHHHHHHHCC---CCC-------CCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCC--C
T ss_conf             88667897877999988712---455-------67873-38999999999999999999974998899675577638--0


Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCCCCHHHHHCCCCCCEEECCCC---CCHHHHHH--HCCCEEEECCCC
Q ss_conf             67776127226899998630886236-0243110000134201478722304677---99899997--079846968888
Q gi|254780812|r  217 EFENYAARSVGRIISAVRRKYPNAKF-ISFAKGAGYMLKNYRRLTDSNAIGLDWS---VPLSFALE--LQKEGPVQGNLD  290 (346)
Q Consensus       217 ~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~~~l~~~~~~~g~d~isiD~~---~dl~~a~~--~~~~~~lqGNld  290 (346)
                      ...+++..+++.+.+.+     ++++ +|.|++-...++.+.+ .++|+++++..   .+++...+  ..++.+.-|=+|
T Consensus       175 ~~~~~~~~~i~~~~~~~-----~~~~~~HiCg~y~~i~~~l~~-~~vd~~~lE~a~~~~~l~~l~~~~~~~k~i~lGvid  248 (307)
T PRK00957        175 YDLEVAKKAIDIIAKGL-----NIPVAMHVCGDVGNIFDDLLK-FNVDILDHEFAGNKENLEVLEEKDLIGKKIGFGCVD  248 (307)
T ss_pred             CHHHHHHHHHHHHHCCC-----CCEEEEEECCCHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEE
T ss_conf             13899999999974146-----745999966773777889985-899989997079944388887640589859986785


Q ss_pred             HHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC---CCCHHHHHHHHHHHHHC
Q ss_conf             4677-099889999999999973259928960897633---66889999999999730
Q gi|254780812|r  291 PMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITP---QVDPKNVLDLVKTVRSE  344 (346)
Q Consensus       291 P~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p---~tp~eNv~~~v~~vr~~  344 (346)
                      ...- ..++|+|++..++.++......-+.|..||.-.   +.--+++++|+++++.-
T Consensus       249 ~~s~~vE~~eeV~~rI~~a~~~v~~e~l~~~pDCGf~~l~~~~a~~KL~~lv~~A~~v  306 (307)
T PRK00957        249 TKLKSVESVDEVKALIEKGIEILGNNNIIIDPDCGMRMLPRDVAFAKLKNMVEAADEV  306 (307)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             7899999999999999999973887659985899998388899999999999999984


No 15 
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=98.55  E-value=2.2e-06  Score=65.76  Aligned_cols=190  Identities=16%  Similarity=0.056  Sum_probs=130.5

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHH
Q ss_conf             20111147999999996124677652467753013722289999999999999977777549816784383110068356
Q gi|254780812|r  138 ITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHE  217 (346)
Q Consensus       138 ~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~  217 (346)
                      +|+=.-+.||.|+++.+.      +...   ..|.+   ..+++.-+.++..+-++...++||+.|||=||.-....+..
T Consensus       119 ~~vK~~l~gp~ti~~~s~------~~~~---~~Y~~---~ee~~~dlA~~~~~Ei~~L~~aG~~~IQiDeP~l~~~~~~~  186 (332)
T cd03311         119 KPLKGILTGPVTIPSPSF------VRFR---GYYPS---REELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLE  186 (332)
T ss_pred             CHHCCCCCCCEECCCCCH------HHHC---CCCCC---HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCC
T ss_conf             012024788722146313------4421---46999---99999999999999999999879988995283575267844


Q ss_pred             HHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCC-----------CCHHHHHCCCCCCEEECCCCC----CHHHHHHHC-
Q ss_conf             7776127226899998630886236-02431100-----------001342014787223046779----989999707-
Q gi|254780812|r  218 FENYAARSVGRIISAVRRKYPNAKF-ISFAKGAG-----------YMLKNYRRLTDSNAIGLDWSV----PLSFALELQ-  280 (346)
Q Consensus       218 f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~-----------~~l~~~~~~~g~d~isiD~~~----dl~~a~~~~-  280 (346)
                      +++....|.+.+.+.+++...++.+ +|.|+|+.           ..++.+.+ ..+|+++++...    +++..+++. 
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~v~~HvC~Gn~~~~~~~~~~y~~i~~~l~~-~~vd~~~lE~~~~r~~~~~~l~~~~~  265 (332)
T cd03311         187 PDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFE-LDVDVFFLEYDNSRAGGLEPLKELPY  265 (332)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHCCC
T ss_conf             26899999999999985389886899987678877765455627899999971-89988999836887410189984899


Q ss_pred             CCEEEECCCCHHH-HCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC---CHHHHHHHHHH
Q ss_conf             9846968888467-709988999999999997325992896089763366---88999999999
Q gi|254780812|r  281 KEGPVQGNLDPMR-LVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQV---DPKNVLDLVKT  340 (346)
Q Consensus       281 ~~~~lqGNldP~~-L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~t---p~eNv~~~v~~  340 (346)
                      ++.+.-|=+|+.. -+.++|+|.+.+++.++......-+.|..||...-+   .....+.+++.
T Consensus       266 ~k~v~lGvid~~~~~vE~~eev~~rI~~a~~~v~~e~l~~~pdCGf~~~~~~~a~~kl~~~~~~  329 (332)
T cd03311         266 DKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLEQLWVSPDCGFATRERGNALTKLENMVKA  329 (332)
T ss_pred             CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9879866882799998999999999999997389988898688898828721789999999985


No 16 
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=98.51  E-value=6.5e-06  Score=62.44  Aligned_cols=188  Identities=15%  Similarity=0.124  Sum_probs=108.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHH
Q ss_conf             32011114799999999612467765246775301372228999999999999997777754981678438311006835
Q gi|254780812|r  137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEH  216 (346)
Q Consensus       137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~  216 (346)
                      ..|+=+-+-||+|++..+...             +..+.....+.+-+.+....-++...++|+..|||=||.-..-+..
T Consensus       115 ~~~vK~~i~GP~t~~~~~~~~-------------~~~~~~~~~l~~~la~~~~~e~~~l~~~g~~~iqiDEP~l~~~~~~  181 (321)
T cd03310         115 ALKVKVVVTGPLTLALLAFLP-------------NGEPDAYEDLAKSLAEFLREQVKELKNRGIVVVQIDEPSLGAVGAG  181 (321)
T ss_pred             CCCCEEEEECHHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCC
T ss_conf             777306981799999765177-------------7887569999999999999999999974998899658466416742


Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCCCCHHHHHCCCCCCEEECCCCC-------CHHHHHHHC--CCEEEE
Q ss_conf             67776127226899998630886236-02431100001342014787223046779-------989999707--984696
Q gi|254780812|r  217 EFENYAARSVGRIISAVRRKYPNAKF-ISFAKGAGYMLKNYRRLTDSNAIGLDWSV-------PLSFALELQ--KEGPVQ  286 (346)
Q Consensus       217 ~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~~~l~~~~~~~g~d~isiD~~~-------dl~~a~~~~--~~~~lq  286 (346)
                      .+.  ...+..++++...... ++++ +|.|.+  ..+..+.+ .++|++++|...       ++....+.+  ....--
T Consensus       182 ~~~--~~~~~~~~~~~~~~~~-~~~~~vH~C~~--~~~~~l~~-~~~d~l~~d~~~~~~~~~e~l~~~~~~~~~~~~~g~  255 (321)
T cd03310         182 AFE--DLEIVDAALEEVSLKS-GGDVEVHLCAP--LDYEALLE-LGVDVIGFDAAALPSKYLEDLKKLLRIGVRTLILGL  255 (321)
T ss_pred             CHH--HHHHHHHHHHHHCCCC-CCCEEEEEECC--CCHHHHHH-CCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf             122--6999999999715567-98679998059--88999985-799716887544764125679998860677743898


Q ss_pred             CCCCHHHHCCCHHHHHHHHHHHHHHHCC------CCCEEEECCCCCCCC---CHHHHHHHHHHHHH
Q ss_conf             8888467709988999999999997325------992896089763366---88999999999973
Q gi|254780812|r  287 GNLDPMRLVVGNQVMIDGVNAILDVLGS------GPFIFNLGHGITPQV---DPKNVLDLVKTVRS  343 (346)
Q Consensus       287 GNldP~~L~~~~e~i~~~~~~~l~~~~~------~~~I~nLGhGi~p~t---p~eNv~~~v~~vr~  343 (346)
                      |.+|+..-..+..+..+.+.++++..+.      ..-+.+..||+-.-+   =.+.++.|++++|+
T Consensus       256 g~~d~~~~~~~~~~~~e~i~~~~~~l~~~~~~~~e~l~v~PdCGl~~l~~~~A~~kL~~l~~aar~  321 (321)
T cd03310         256 VVTDNEAKGRNAWKEIERLEKLVRRLEEPGEVLDEILYLTPDCGLAFLPPQEARRKLALLAEAARE  321 (321)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             976078788886788889999999741101486402998089889979989999999999999677


No 17 
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=98.50  E-value=3.4e-06  Score=64.45  Aligned_cols=179  Identities=15%  Similarity=0.205  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHC
Q ss_conf             47999999996124677652467753013722289999999999999977777549816784383110068356777612
Q gi|254780812|r  144 CGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAA  223 (346)
Q Consensus       144 ~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~  223 (346)
                      +-||.|++.-+-     ..       -|.+.   ..++.-+.++..+-+++..++|++.|||=|+.-..+ ++...+|..
T Consensus       129 ipgP~tl~~~~~-----~~-------~Y~d~---~~~~~dla~a~~~Ei~~L~~aG~~~IQiDeP~~~~~-~de~~~~~v  192 (339)
T PRK09121        129 LPGPMTMIDTLY-----DD-------HYKSR---EKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVF-FDEVNDWGV  192 (339)
T ss_pred             CCCCEEEEHHHC-----CC-------CCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHC-HHHHHHHHH
T ss_conf             565232000112-----11-------13999---999999999999999999987999898465676515-788899999


Q ss_pred             CCHHHHHHHHHHHCCCCEEECCCCC-------C------------CCCHHHHHCCCCCCEEECC---CCCCHHHHHHHCC
Q ss_conf             7226899998630886236024311-------0------------0001342014787223046---7799899997079
Q gi|254780812|r  224 RSVGRIISAVRRKYPNAKFISFAKG-------A------------GYMLKNYRRLTDSNAIGLD---WSVPLSFALELQK  281 (346)
Q Consensus       224 p~~kkI~~~ik~~~~~vpiI~f~~g-------~------------~~~l~~~~~~~g~d~isiD---~~~dl~~a~~~~~  281 (346)
                      ..+++.++.+..    --.+|.|+|       .            ...++.+.+ .++|++++.   .+.+++......+
T Consensus       193 ~~l~~a~~gl~~----~~~~HiC~G~~~~~~~~~~~~~~~~~~~y~~i~~~l~~-~~vd~~~lE~~~~r~~~~~l~~~~~  267 (339)
T PRK09121        193 AALERAIEGLKC----ETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQK-SNIDIISLECHNSHVPMDLLELIRG  267 (339)
T ss_pred             HHHHHHHCCCCC----CEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHCCC
T ss_conf             999998558986----71899648988888765322357535658999999986-6898899963799983568873478


Q ss_pred             CEEEECCCCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC---HHHHHHHHHHHHH
Q ss_conf             8469688884677-099889999999999973259928960897633668---8999999999973
Q gi|254780812|r  282 EGPVQGNLDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVD---PKNVLDLVKTVRS  343 (346)
Q Consensus       282 ~~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp---~eNv~~~v~~vr~  343 (346)
                      +.++-|=+|...- +.++|+|++..++.++-.....-+.|..||..+-+.   -+++++|+++.+.
T Consensus       268 k~v~lGvid~~~~~vE~~e~V~~Ri~~a~~~v~~erl~~spDCGf~~l~r~iA~~KL~~mvega~~  333 (339)
T PRK09121        268 KKVMVGAIDVASDTIETPEEVADTLRKALQFVDADKLYPCTNCGMAPLSREVARGKLNALSAGAEI  333 (339)
T ss_pred             CEEEECCEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             868745177889999999999999999998389889898789899849859999999999999999


No 18 
>PRK04326 methionine synthase; Provisional
Probab=98.48  E-value=5.6e-06  Score=62.91  Aligned_cols=177  Identities=16%  Similarity=0.206  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHC
Q ss_conf             47999999996124677652467753013722289999999999999977777549816784383110068356777612
Q gi|254780812|r  144 CGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAA  223 (346)
Q Consensus       144 ~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~  223 (346)
                      +-||.|++.....     .       -|.+.   .+++.-++++...-+++..++||+.|||=|+.-.. .+++ -++..
T Consensus       134 ipgP~t~~~~~~~-----~-------~Y~~~---ee~~~dla~a~~~Ei~~L~~aG~~~IQiDeP~l~~-~~~~-~~~~~  196 (330)
T PRK04326        134 ITGPYTIAEWSFN-----E-------YYDDK---RELAFDLAKVINKEIKNLVEAGARYIQIDEPALHT-HPEE-VEIAK  196 (330)
T ss_pred             ECCHHHHHHHHCC-----C-------CCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHC-CHHH-HHHHH
T ss_conf             4898998742044-----3-------37999---99999999999999999998799899965852003-9889-99999


Q ss_pred             CCHHHHHHHHHHHCCCCE-EECCCCCCCC-CHHHHHCCCCCCEEECCCCC----CHHHHHHHC-CCEEEECCCCHHHH-C
Q ss_conf             722689999863088623-6024311000-01342014787223046779----989999707-98469688884677-0
Q gi|254780812|r  224 RSVGRIISAVRRKYPNAK-FISFAKGAGY-MLKNYRRLTDSNAIGLDWSV----PLSFALELQ-KEGPVQGNLDPMRL-V  295 (346)
Q Consensus       224 p~~kkI~~~ik~~~~~vp-iI~f~~g~~~-~l~~~~~~~g~d~isiD~~~----dl~~a~~~~-~~~~lqGNldP~~L-~  295 (346)
                      ..+++.++.+     +.. .+|.|+|+-. .++.+.+ ..+|++++++..    +++..++.. ++.+.-|=+|...- +
T Consensus       197 ea~n~~~~~~-----~~~i~~HiC~Gny~~i~~~l~~-~~vd~~~lE~~~~~~~~l~~l~~~~~~k~v~~Gvvd~k~~~l  270 (330)
T PRK04326        197 EALNIIVKGI-----DVKLGLHVCYGDYSRLAPYILE-FPVDQFDLEFKNYNFKLLDLLKEYGFEKELGVGVIDVHSPRV  270 (330)
T ss_pred             HHHHHHHCCC-----CCEEEEEECCCCHHHHHHHHHH-CCCCEEEHHHHCCCCHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf             9999972789-----9779999547766889999970-998888675407983666888846999848873672689998


Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC---HHHHHHHHHHHHH
Q ss_conf             99889999999999973259928960897633668---8999999999973
Q gi|254780812|r  296 VGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVD---PKNVLDLVKTVRS  343 (346)
Q Consensus       296 ~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp---~eNv~~~v~~vr~  343 (346)
                      .++|+|++.+.+.++......-++|..||.-.-++   -+++++++++++.
T Consensus       271 E~~e~i~~ri~~a~~~v~~erl~lspdCGf~~l~~~~a~~KL~~lv~~a~~  321 (330)
T PRK04326        271 ESVEEIKEAIKKLLEYFPPEKVYINPDCGLKLLPREIAYQKLVNMVKATRE  321 (330)
T ss_pred             CCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999999999997389777998589999829989999999999999999


No 19 
>pfam01717 Meth_synt_2 Cobalamin-independent synthase, Catalytic domain. This is a family of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, EC:2.1.1.14 from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length. This domain contains the catalytic residues of the enzyme.
Probab=98.47  E-value=5.4e-06  Score=62.98  Aligned_cols=187  Identities=14%  Similarity=0.099  Sum_probs=119.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH-HH---
Q ss_conf             32011114799999999612467765246775301372228999999999999997777754981678438311-00---
Q gi|254780812|r  137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHA-GC---  212 (346)
Q Consensus       137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~a-g~---  212 (346)
                      +.++-+.+-||.|++....      +.      -|.+   ..+++.-++++..+-++...++||..|||=||.- ..   
T Consensus       120 ~~~~K~~i~gP~t~~~~~~------~~------~Y~~---~~~~~~dla~a~~~ei~~l~~aG~~~iQiDeP~l~~~~~~  184 (324)
T pfam01717       120 DKPVKGMLTGPVTILNWSF------VR------DDQD---REAQAMQIALALRDEVKDLEAAGILVIQIDEPALREGLPL  184 (324)
T ss_pred             CCCHHHHCCCCHHHHCCCC------CC------CCCC---HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCC
T ss_conf             7430120478635440456------65------7999---9999999999999999999987998899757788636644


Q ss_pred             --CCHHHHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCCC-CHHHHHCCCCCCEEECCCCC----CHHHHHHHC-CCE
Q ss_conf             --683567776127226899998630886236-024311000-01342014787223046779----989999707-984
Q gi|254780812|r  213 --LGEHEFENYAARSVGRIISAVRRKYPNAKF-ISFAKGAGY-MLKNYRRLTDSNAIGLDWSV----PLSFALELQ-KEG  283 (346)
Q Consensus       213 --Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~~-~l~~~~~~~g~d~isiD~~~----dl~~a~~~~-~~~  283 (346)
                        ..++.+.++.   +....-......++..+ +|.|+|+.. .++.+.+ .++|++++++..    +++-.+++. ++.
T Consensus       185 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~H~C~gny~~i~~~l~~-~~vd~~~lE~~~~~~~~~~~l~~~~~~k~  260 (324)
T pfam01717       185 KKLDWAAYLDWA---VAAFRLDTIVAALDTQVHTHVCYSDFNDILDAIDA-LDVDVLTIEFARSDMENLEALEEWGYGKG  260 (324)
T ss_pred             CCCCHHHHHHHH---HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHCCCCCE
T ss_conf             334989999999---99999871678999889999668884999999974-89888981116898114588884799984


Q ss_pred             EEECCCCHHH-HCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH---HHHHHHHHHHH
Q ss_conf             6968888467-70998899999999999732599289608976336688---99999999997
Q gi|254780812|r  284 PVQGNLDPMR-LVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDP---KNVLDLVKTVR  342 (346)
Q Consensus       284 ~lqGNldP~~-L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~---eNv~~~v~~vr  342 (346)
                      ++-|=+|... -+.++|+|++.+++..+-.....-+.|.-||...-|..   ++++++|+++|
T Consensus       261 v~lGvVd~k~~~lE~~e~v~~rI~~aa~~v~~erL~~spdCGf~~l~~e~a~~KL~~~ve~a~  323 (324)
T pfam01717       261 VGFGVVDIHSPRVPSVEEIKALIKKALDIVPADRLWVNPDCGLKTRPWEEARAALRNMVDAAK  323 (324)
T ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             998888178999899999999999999848988899878889884988999999999999856


No 20 
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=98.17  E-value=9.7e-05  Score=54.19  Aligned_cols=209  Identities=12%  Similarity=0.051  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             877787642102453201111-4799999999612467765246775301372228999999999999997777754981
Q gi|254780812|r  123 IFQSISILRKKLPNHITLIGF-CGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVD  201 (346)
Q Consensus       123 v~eAi~~~k~~l~~~~pLIGF-~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad  201 (346)
                      +.+..+.+++..+  .|...+ +.||.++..-+    +......   -.|.+.   .++++-++++..+-++...+||++
T Consensus       118 ~~~~~~~l~~~t~--~~~~K~tipsP~~l~~~~----~~~~~~~---~~Y~~~---~~~~~dlA~a~~~Ei~~L~~aG~~  185 (370)
T PRK06520        118 MLDHFRFLKSHAG--DATPKMTIPSPSVLHFRG----GRKAIDA---EVYPDL---DAFFDDLAKTYRDAVKAFYDAGCR  185 (370)
T ss_pred             HHHHHHHHHHHCC--CCCCCEEECCHHHHHHCC----CCCCCCH---HCCCCH---HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             4999999997469--999847869279983305----5222421---107999---999999999999999999987998


Q ss_pred             EEEECCC-CHHHCCHHHH----------HHHHCCCHHHHHHHHHHHCCCCE-EECCCCCCCC-----------CHHHHHC
Q ss_conf             6784383-1100683567----------77612722689999863088623-6024311000-----------0134201
Q gi|254780812|r  202 VIQIFDT-HAGCLGEHEF----------ENYAARSVGRIISAVRRKYPNAK-FISFAKGAGY-----------MLKNYRR  258 (346)
Q Consensus       202 ~iqIFDs-~ag~Ls~~~f----------~~f~~p~~kkI~~~ik~~~~~vp-iI~f~~g~~~-----------~l~~~~~  258 (346)
                      .|||=|+ ||-+.++...          +++..-|++-+-..+...-.++. .+|.|+|+..           ..+.+..
T Consensus       186 ~IQiDep~~a~l~~~~~~~~~~~~~~~~~~l~~~~~~~~N~al~~~p~d~~i~~HiC~Gn~~~~~~~~g~Y~~i~~~l~~  265 (370)
T PRK06520        186 YLQLDDTVWAYLCSDDERQQARERGDDPDNLQQIYARVINYAIAERPADLTITLHVCRGNFRSTWISEGGYEPVAETLLG  265 (370)
T ss_pred             EEEECCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             89875741653068777867765368999999999999999970899774899987678878776556664667999984


Q ss_pred             CCCCCEEECCCCCC----HHHHHHH--CCCEEEECCCCHHH-HCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC----
Q ss_conf             47872230467799----8999970--79846968888467-7099889999999999973259928960897633----
Q gi|254780812|r  259 LTDSNAIGLDWSVP----LSFALEL--QKEGPVQGNLDPMR-LVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITP----  327 (346)
Q Consensus       259 ~~g~d~isiD~~~d----l~~a~~~--~~~~~lqGNldP~~-L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p----  327 (346)
                      ..++|++++.+...    ++..+.+  +++.++-|=+|... -+.++|+|++..++.++-......+.|..||...    
T Consensus       266 ~~~vd~~~lE~d~~r~g~~e~L~~l~~~~k~vvlGvid~~~~~vE~~eev~~RI~~A~~~vp~erl~~spdCGFas~~~g  345 (370)
T PRK06520        266 GVNVDAYFLEYDNERAGGFEPLRFLPKGNKQVVLGLITSKNGELENKDDVKRRLEEAAKFVPLEQLCLSPQCGFASTEEG  345 (370)
T ss_pred             HCCCCEEEEEECCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCCC
T ss_conf             37888589984475445422677568678779986783799999999999999999996179999888788898760238


Q ss_pred             -----CCCHHHHHHHHHHHHH
Q ss_conf             -----6688999999999973
Q gi|254780812|r  328 -----QVDPKNVLDLVKTVRS  343 (346)
Q Consensus       328 -----~tp~eNv~~~v~~vr~  343 (346)
                           +.--++++.+++.+++
T Consensus       346 ~~lt~e~~w~KL~~~~e~A~~  366 (370)
T PRK06520        346 NSLSEDEQWDKLRLVVEIANE  366 (370)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
T ss_conf             888999999999999999999


No 21 
>PRK01207 methionine synthase; Provisional
Probab=98.02  E-value=0.0001  Score=54.07  Aligned_cols=187  Identities=14%  Similarity=0.119  Sum_probs=115.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE-------EEECCCC
Q ss_conf             320111147999999996124677652467753013722289999999999999977777549816-------7843831
Q gi|254780812|r  137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDV-------IQIFDTH  209 (346)
Q Consensus       137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~-------iqIFDs~  209 (346)
                      ++|+=|-.-||+|++.....     .       -|.+.   .++-..++.++-+=++...+||+++       |||=+|.
T Consensus       118 ~kpvK~~ltGP~TI~~~s~~-----~-------~Y~~r---~~la~~lA~aln~Ev~~L~~ag~~i~~G~k~~IQiDEPa  182 (343)
T PRK01207        118 KKPIKVPITGPYTMMDWSFN-----D-------FYRDR---YDLAMEFARIINEELKDIKSAWDRKSPGRKLEIQIDEPA  182 (343)
T ss_pred             CCCCEEEECCHHHHHHHHCC-----C-------CCCCH---HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCH
T ss_conf             79835760689999975456-----4-------45899---999999999999999999981773015776338756741


Q ss_pred             HHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC--CCCCHHHHHCCCCCCEEECCCCC----------------
Q ss_conf             100683567776127226899998630886236024311--00001342014787223046779----------------
Q gi|254780812|r  210 AGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG--AGYMLKNYRRLTDSNAIGLDWSV----------------  271 (346)
Q Consensus       210 ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g--~~~~l~~~~~~~g~d~isiD~~~----------------  271 (346)
                      -.. .++ +.+|+...+++.++.+...   + .+|.|.+  -...+..+.+ .++|++++.+..                
T Consensus       183 ~~~-~~~-~~~~av~a~~~~~~gv~~~---~-~~H~Cy~~~~~~~~~~i~~-~~~d~~~~E~~~~d~~~~~~~~~~~~~~  255 (343)
T PRK01207        183 TTT-HPD-EMDIVVDSINKSVYGIDNE---F-SIHVCYSSDYRLLYDRIPE-LNIDGYNLEYSNRDTLEPGTSDEKRPGF  255 (343)
T ss_pred             HHC-CHH-HHHHHHHHHHHHHCCCCCC---E-EEEEECCCCHHHHHHHHHH-CCCCEEEEEECCCCHHHCCHHHHHCCCH
T ss_conf             115-775-9999999999984589876---3-9999678730556777862-7998898761366301001123202314


Q ss_pred             -CHHHHHHH----CCCE-EEECCCCHHHH-CCCHHHHHHHHHHHHHHHCC-CCCEEEECCCCCCC---CCHHHHHHHHHH
Q ss_conf             -98999970----7984-69688884677-09988999999999997325-99289608976336---688999999999
Q gi|254780812|r  272 -PLSFALEL----QKEG-PVQGNLDPMRL-VVGNQVMIDGVNAILDVLGS-GPFIFNLGHGITPQ---VDPKNVLDLVKT  340 (346)
Q Consensus       272 -dl~~a~~~----~~~~-~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~-~~~I~nLGhGi~p~---tp~eNv~~~v~~  340 (346)
                       |++...++    ..+. +.-|=+|-..- ..+.|+|++..++.|+...+ .....|..||+-.-   .-.+.++.||++
T Consensus       256 ~dl~~~~~~~~~~~~~k~Ig~GViDi~s~~vetveei~~rI~~al~~i~~~e~l~vnPDCGLk~~~~~~a~~KL~nMV~A  335 (343)
T PRK01207        256 QDLKYFAEHNESLQRKKFIGLGVTDVHIDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCGLRTRSREIGEQKLRNMVAA  335 (343)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             45777877554204688266005862699999989999999999972896325988899998879889999999999999


Q ss_pred             HHHCC
Q ss_conf             97306
Q gi|254780812|r  341 VRSEK  345 (346)
Q Consensus       341 vr~~~  345 (346)
                      +|+-+
T Consensus       336 ak~vr  340 (343)
T PRK01207        336 KNNIL  340 (343)
T ss_pred             HHHHH
T ss_conf             99998


No 22 
>PRK06233 hypothetical protein; Provisional
Probab=98.00  E-value=0.00024  Score=51.36  Aligned_cols=166  Identities=12%  Similarity=0.075  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC-CHHHC--------CHH---HHHHHHCCCHHHHHHHHHHHCCCCEE-E
Q ss_conf             89999999999999977777549816784383-11006--------835---67776127226899998630886236-0
Q gi|254780812|r  177 FNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDT-HAGCL--------GEH---EFENYAARSVGRIISAVRRKYPNAKF-I  243 (346)
Q Consensus       177 ~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs-~ag~L--------s~~---~f~~f~~p~~kkI~~~ik~~~~~vpi-I  243 (346)
                      ..+++.-+.++..+-++...+||++.|||=|+ ||-++        .|+   .|.+++..+++-+-..++..-.+..+ +
T Consensus       162 ~ee~~~dla~a~~~Ei~~L~~aG~~~IQiDdp~~a~l~~~~~~~~~~p~~~~~~~~~~~~~v~~~N~al~~~P~d~~i~~  241 (372)
T PRK06233        162 WSDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNETEDDPEEHQKYVKLAEDAVYVINKLLADLPEDLTVTT  241 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             99999999999999999999869998984697478898750122247256779999999999999999717998858999


Q ss_pred             CCCCCCC-----------CCHHHHHCCCCCCEEECCCCC----CHHHHHHH----CCCEEEECCCCHHH-HCCCHHHHHH
Q ss_conf             2431100-----------001342014787223046779----98999970----79846968888467-7099889999
Q gi|254780812|r  244 SFAKGAG-----------YMLKNYRRLTDSNAIGLDWSV----PLSFALEL----QKEGPVQGNLDPMR-LVVGNQVMID  303 (346)
Q Consensus       244 ~f~~g~~-----------~~l~~~~~~~g~d~isiD~~~----dl~~a~~~----~~~~~lqGNldP~~-L~~~~e~i~~  303 (346)
                      |.|+|+.           ...+.+.+ .++|.+++.+..    +++..+.+    .++.++-|=+|... -+.++|+|.+
T Consensus       242 HiC~Gn~~~~~~~~g~Y~~Ia~~l~~-~~vd~~~lE~d~~R~g~~e~L~~~~~~~~~k~vvlGvId~~s~~vE~~e~V~~  320 (372)
T PRK06233        242 HICRGNFKSTYLFSGGYEPVAKYLGQ-LNYDGFFLEYDNDRSGSFEPLKKIWNQRDNVRIVLGLITSKFPELEDPDEIIA  320 (372)
T ss_pred             EEECCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHH
T ss_conf             87679887665444667999999986-89998999716755562558998642689988999778489999999999999


Q ss_pred             HHHHHHHHHCCCCCEEEECCCCC---------CCCCHHHHHHHHHHHHH
Q ss_conf             99999997325992896089763---------36688999999999973
Q gi|254780812|r  304 GVNAILDVLGSGPFIFNLGHGIT---------PQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       304 ~~~~~l~~~~~~~~I~nLGhGi~---------p~tp~eNv~~~v~~vr~  343 (346)
                      .+++.++-......++|.-||..         .+.--++++.+++.+++
T Consensus       321 RI~~a~~~v~~e~l~~spdCGFas~~~g~~~~~~~qwaKL~~~~e~A~~  369 (372)
T PRK06233        321 RIDEAAEYVPLSNLALSTQCGFASTEEGNILTEADQWAKLALVKKIADK  369 (372)
T ss_pred             HHHHHHHHCCHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999997189988888888898753458878999999999999999999


No 23 
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=97.81  E-value=0.00076  Score=47.90  Aligned_cols=199  Identities=13%  Similarity=0.139  Sum_probs=122.1

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             87642102453201111479999999961246776524677530137222899999999999999777775498167843
Q gi|254780812|r  127 ISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF  206 (346)
Q Consensus       127 i~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF  206 (346)
                      ....++ +.. +|+=|-.-||.|++.--        |..       +...-+.+..-+..++.+-++..-++|+.+|||=
T Consensus       116 ~~~a~~-~~~-~~~K~~ltGP~ti~~~s--------~~~-------~~~~~~el~~~iA~al~~ev~~l~~agi~~iQiD  178 (330)
T COG0620         116 FLYAQS-LTE-KPVKGMLTGPVTILLWS--------FNR-------YYISREELAKDIALALRDEVKDLEDAGIKIIQID  178 (330)
T ss_pred             HHHHHH-CCC-CCCCEECCCHHHHHHHH--------CCC-------CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             777654-156-66331137578677654--------444-------4689999999999999999999997599299626


Q ss_pred             CCCHH-HCCHHH---HHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCCCCHHHHHCCCCCCEEECCCCC-CHHHHH---
Q ss_conf             83110-068356---7776127226899998630886236-02431100001342014787223046779-989999---
Q gi|254780812|r  207 DTHAG-CLGEHE---FENYAARSVGRIISAVRRKYPNAKF-ISFAKGAGYMLKNYRRLTDSNAIGLDWSV-PLSFAL---  277 (346)
Q Consensus       207 Ds~ag-~Ls~~~---f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~~~l~~~~~~~g~d~isiD~~~-dl~~a~---  277 (346)
                      |+.-+ .++...   |.+++...++..+...+.   ++-| .|.|.+.-..+.+....-.+|+++++..- +++...   
T Consensus       179 Epal~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---d~~i~~HiCy~e~~~~~~~i~~ld~dv~~~e~~~s~~~~~~~~~  255 (330)
T COG0620         179 EPALREGLPLRRDDDYLEWAVEAINLAAAGVGA---DTQIHLHICYSEFNDIPDAIEALDADVIDIETSRSRMELLEVLE  255 (330)
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC---CCEEEEEEECCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf             666643775446647899999999999853788---83899998677455467788644760785320345512678987


Q ss_pred             HHC-CCEEEECCCCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC---CCHHHHHHHHHHHHHCC
Q ss_conf             707-98469688884677-0998899999999999732599289608976336---68899999999997306
Q gi|254780812|r  278 ELQ-KEGPVQGNLDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQ---VDPKNVLDLVKTVRSEK  345 (346)
Q Consensus       278 ~~~-~~~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~---tp~eNv~~~v~~vr~~~  345 (346)
                      +.. ++.+--|=+|-..= ..+.+++.+..++.++.........|..||+-.-   .-.+.++.++++++..+
T Consensus       256 ~~~~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~~~~~~e~~~vnPDCGl~~~~~~~a~~kL~nmv~a~~~~r  328 (330)
T COG0620         256 EVKYDKEIGLGVVDIHSPKVESVEEIAARIRKALERVPPERLYVNPDCGLKTLPREIAEAKLENMVKAAKEIR  328 (330)
T ss_pred             HCCCCCEEECCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             4056772451468657888798899999999999738700099779866555747999999999999999974


No 24 
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=97.38  E-value=0.0026  Score=44.10  Aligned_cols=175  Identities=13%  Similarity=0.098  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH-HHCCHHHHHHHHC
Q ss_conf             799999999612467765246775301372228999999999999997777754981678438311-0068356777612
Q gi|254780812|r  145 GAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHA-GCLGEHEFENYAA  223 (346)
Q Consensus       145 GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~a-g~Ls~~~f~~f~~  223 (346)
                      -||+|++. +     +++      -.|.+   ..+|+..++++..+-++   +.|++.|||-+|.- ..-.++.+.++..
T Consensus       134 pGP~T~~~-l-----s~~------~~y~~---~~~l~~~~a~~l~~~i~---~l~~~~IQiDEPal~~~~~~~~~~~~~~  195 (320)
T PRK08575        134 PGPLTLAY-L-----SIN------EYYKD---LEELMEAYAKVVNSLIK---ELDSDIVEIHEPSLFSKGIKEDLLEVSK  195 (320)
T ss_pred             CCHHHHHH-H-----HCC------CCCCC---HHHHHHHHHHHHHHHHH---HHHHCEEECCCHHHHCCCHHHHHHHHHH
T ss_conf             75999999-8-----612------33599---99999999999999999---6120849626705431211899999999


Q ss_pred             CCHHHHHHHHHHHCCCCEEECCCCC-CCCCHHHHHCCCCCCEEECCCCCC----HHHHHHH-CCCEEEECCCCHHHH-CC
Q ss_conf             7226899998630886236024311-000013420147872230467799----8999970-798469688884677-09
Q gi|254780812|r  224 RSVGRIISAVRRKYPNAKFISFAKG-AGYMLKNYRRLTDSNAIGLDWSVP----LSFALEL-QKEGPVQGNLDPMRL-VV  296 (346)
Q Consensus       224 p~~kkI~~~ik~~~~~vpiI~f~~g-~~~~l~~~~~~~g~d~isiD~~~d----l~~a~~~-~~~~~lqGNldP~~L-~~  296 (346)
                      ...+++.+.+...   + +++.+-| ....++.+.. ..+|++++|....    +...... .++...-|=+|-..- ..
T Consensus       196 ~a~~~~~~~~~~~---~-~l~tyfg~~~~~~~~l~~-l~vd~i~ld~~~~~~~~l~~l~~~~~~k~l~~GvId~rn~~~e  270 (320)
T PRK08575        196 EVYKTMIEGLNKE---K-HVVTYFGINFQRLPTLVI-LPVDLFGGDVPENNKGKLGRVYAYIKKKRVYLGILDARNTKME  270 (320)
T ss_pred             HHHHHHHHCCCCC---E-EEEECCCCHHHHHHHHHC-CCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEEECCCCCCC
T ss_conf             9999987158977---7-999746976776678734-9977799984046530038887326898799989967888749


Q ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEECCCCC---CCCCHHHHHHHHHHHHH
Q ss_conf             988999999999997325992896089763---36688999999999973
Q gi|254780812|r  297 GNQVMIDGVNAILDVLGSGPFIFNLGHGIT---PQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       297 ~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~---p~tp~eNv~~~v~~vr~  343 (346)
                      +.+++.+..++.... ....-+.+..||+.   .+.=-++++++-+..|.
T Consensus       271 ~~e~i~~~i~~~~~~-~~erl~v~p~CgL~~lP~~iA~~Kl~~l~k~a~~  319 (320)
T PRK08575        271 RIDTIRRILRKVYEK-GAERIIVGNNTLLDFIPEIVAWRKLKLLGKLKGG  319 (320)
T ss_pred             CHHHHHHHHHHHHCC-CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             999999999998417-9883998089987788999999999999887568


No 25 
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=96.46  E-value=0.031  Score=36.58  Aligned_cols=30  Identities=37%  Similarity=0.344  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             999999999999777775498167843831
Q gi|254780812|r  180 LLDFLSDVSAEYLIAQIHAGVDVIQIFDTH  209 (346)
Q Consensus       180 ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~  209 (346)
                      +|+.+..+-.+.++...++||+-|||=+|.
T Consensus       176 lL~~LlpvY~elL~~L~~~G~~wVQiDEP~  205 (756)
T PRK05222        176 LLDDLLPVYQELLAELAAAGAEWVQIDEPA  205 (756)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEECCCCE
T ss_conf             999999999999999997799779725870


No 26 
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=96.22  E-value=0.14  Score=31.96  Aligned_cols=166  Identities=17%  Similarity=0.150  Sum_probs=96.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH-HCCH
Q ss_conf             320111147999999996124677652467753013722289999999999999977777549816784383110-0683
Q gi|254780812|r  137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG-CLGE  215 (346)
Q Consensus       137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag-~Ls~  215 (346)
                      -+|+|  + ||+|...-   +++.           ++......+++.+..+-.+.++...++||+-|||=+|.-. -+++
T Consensus       150 ~kPvL--v-GPvTfL~L---sK~~-----------~~~~~~~~~l~~Ll~~Y~~lL~~L~~~G~~wVQiDEP~Lv~Dl~~  212 (360)
T cd03312         150 TKPVL--L-GPVTFLKL---SKAK-----------GGGFDRLSLLDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPE  212 (360)
T ss_pred             CCCEE--E-CHHHHHHH---HCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCH
T ss_conf             87579--7-44899887---4224-----------788798999999999999999999976997797147523047999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHCCCCEEE--CCCCCCCCCHHHHHCCCCCCEEECCCCCC---HHHHHHHC--CCEEEECC
Q ss_conf             5677761272268999986308862360--24311000013420147872230467799---89999707--98469688
Q gi|254780812|r  216 HEFENYAARSVGRIISAVRRKYPNAKFI--SFAKGAGYMLKNYRRLTDSNAIGLDWSVP---LSFALELQ--KEGPVQGN  288 (346)
Q Consensus       216 ~~f~~f~~p~~kkI~~~ik~~~~~vpiI--~f~~g~~~~l~~~~~~~g~d~isiD~~~d---l~~a~~~~--~~~~lqGN  288 (346)
                      +.-..|.     +..+.+.+..++++++  -|-++.+..++.+.. .+++++++|-...   ++..+..+  ++...-|=
T Consensus       213 ~~~~~~~-----~~Y~~L~~~~~~~kill~TYFg~~~~~~~~l~~-lpv~gl~lDlv~g~~~l~~i~~~~~~~k~L~aGV  286 (360)
T cd03312         213 EWLAAFK-----RAYEELAKAAPGLKLLLATYFGSLGENLDLLAS-LPVDGLHLDLVRGPENLEAVLKAGFADKVLSAGV  286 (360)
T ss_pred             HHHHHHH-----HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHC-CCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf             9999999-----999999715789719998876348899999975-9986799860578667999996089986799975


Q ss_pred             CCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf             884677-09988999999999997325992896089763
Q gi|254780812|r  289 LDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGIT  326 (346)
Q Consensus       289 ldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~  326 (346)
                      +|-.-. ..+-++..+....+....+ ...+.+..|-++
T Consensus       287 VdGRNIWr~dl~~~l~~l~~l~~~~~-~~l~vs~ScSLL  324 (360)
T cd03312         287 VDGRNIWRADLAASLALLETLAAILG-DRLVVSPSCSLL  324 (360)
T ss_pred             ECCCEECHHCHHHHHHHHHHHHHHHC-CCEEEECCCCCC
T ss_conf             45845243179999999999998628-968996888654


No 27 
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930    In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys.    Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis.  ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate  Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=96.20  E-value=0.018  Score=38.26  Aligned_cols=150  Identities=15%  Similarity=0.197  Sum_probs=81.1

Q ss_pred             HHHCCCCCCCHHHHHHHHCCCHHHHHHHHH-----------HHH-------------HHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             961246776524677530137222899999-----------999-------------99999977777549816784383
Q gi|254780812|r  153 YMISGGFIKDHGQNRVFAYQNSRAFNWLLD-----------FLS-------------DVSAEYLIAQIHAGVDVIQIFDT  208 (346)
Q Consensus       153 YmieG~~sk~~~~~~~~~~~~p~~~~~ll~-----------~lt-------------~~~~~yl~~Qi~aGad~iqIFDs  208 (346)
                      |-+|-=|--+|.-.++||.++|  |++|=+           +|-             +++..|++.-.++|+|+.=||||
T Consensus       590 fSLE~WGGATFDVA~RFL~EDP--WeRL~~lR~~vPN~lfQMLLRgANaVGYtnYPDNvv~~Fv~qa~~~GiD~FRvFDs  667 (1169)
T TIGR01235       590 FSLECWGGATFDVAMRFLHEDP--WERLEDLRKEVPNILFQMLLRGANAVGYTNYPDNVVKKFVKQAAQSGIDIFRVFDS  667 (1169)
T ss_pred             CEEHHCCCHHHHHHHHHCCCCH--HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf             0002058611678765157883--79999998546852468887541000024775348999999888468307870011


Q ss_pred             --------------------------CHHHCCHHHHHHHHCCCHHHH-----------------------------HHHH
Q ss_conf             --------------------------110068356777612722689-----------------------------9998
Q gi|254780812|r  209 --------------------------HAGCLGEHEFENYAARSVGRI-----------------------------ISAV  233 (346)
Q Consensus       209 --------------------------~ag~Ls~~~f~~f~~p~~kkI-----------------------------~~~i  233 (346)
                                                ..|-++...=.+|=|.|...|                             +.+|
T Consensus       668 LN~l~~l~l~~dAv~~~gkv~EAAicYtGDil~~~r~KYdL~YYt~lA~eL~~aGaHIL~iKDMAGlLKP~AAk~L~~AL  747 (1169)
T TIGR01235       668 LNWLENLKLGMDAVKEAGKVVEAAICYTGDILDPARKKYDLKYYTNLAEELVKAGAHILGIKDMAGLLKPAAAKLLIKAL  747 (1169)
T ss_pred             CCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHHH
T ss_conf             13321020163677750997999975200326888974377889999999997098034301011244289999999999


Q ss_pred             HHHCCCCEEECCCCCCCC-CHHHHH--CCCCCCEEE--CCCCCCHHHHHH--HCC-CEEEEC-CCCHHHHC-------CC
Q ss_conf             630886236024311000-013420--147872230--467799899997--079-846968-88846770-------99
Q gi|254780812|r  234 RRKYPNAKFISFAKGAGY-MLKNYR--RLTDSNAIG--LDWSVPLSFALE--LQK-EGPVQG-NLDPMRLV-------VG  297 (346)
Q Consensus       234 k~~~~~vpiI~f~~g~~~-~l~~~~--~~~g~d~is--iD~~~dl~~a~~--~~~-~~~lqG-NldP~~L~-------~~  297 (346)
                      |+++|++||-.|..+++. ..-.|.  ...|+|++-  +|+---+.  -+  ++. =-+|+| |+||-+=.       .=
T Consensus       748 re~~PD~PiH~HTHDtSG~ava~~~aaveAGvDvvDvAv~smSG~T--SQPS~~a~~~aL~G~~~dpgln~~~v~~ls~Y  825 (1169)
T TIGR01235       748 REKIPDLPIHLHTHDTSGAAVASMLAAVEAGVDVVDVAVDSMSGLT--SQPSLGALVAALEGSERDPGLNVEDVRELSAY  825 (1169)
T ss_pred             HHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEHHHHHHHCCCC--HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             7327998568626661268999999998758861145676410450--03338999997278989888898999898788


Q ss_pred             HHHHHHHHH
Q ss_conf             889999999
Q gi|254780812|r  298 NQVMIDGVN  306 (346)
Q Consensus       298 ~e~i~~~~~  306 (346)
                      ||+++...-
T Consensus       826 We~~R~~Ya  834 (1169)
T TIGR01235       826 WEEVRKLYA  834 (1169)
T ss_pred             HHHHHHHHH
T ss_conf             999974421


No 28 
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276   This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=96.19  E-value=0.08  Score=33.72  Aligned_cols=32  Identities=31%  Similarity=0.160  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             89999999999999977777549816784383
Q gi|254780812|r  177 FNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDT  208 (346)
Q Consensus       177 ~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs  208 (346)
                      ...+|+.|..+=.+-++...++||+=|||=+|
T Consensus       191 ~~~~l~~Llp~Y~~vl~~L~~~Ga~wvQiDEP  222 (778)
T TIGR01371       191 PLELLEKLLPVYKEVLKKLAEAGATWVQIDEP  222 (778)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             79998999999999999998679708986385


No 29 
>PRK13116 consensus
Probab=95.72  E-value=0.086  Score=33.49  Aligned_cols=62  Identities=19%  Similarity=0.175  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA  198 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a  198 (346)
                      .+..+++.++.+|++.. ++|++-        ++|.                  ||- ++.       -.-+|++...++
T Consensus        77 ~~~~~~~~v~~ir~~~~-~~Pivl--------M~Y~------------------N~i-~~~-------G~e~F~~~~~~a  121 (278)
T PRK13116         77 TVDSALEQIKRVRAAYP-EVPIGM--------LIYG------------------NVP-FTR-------GLDRFYQEFAEA  121 (278)
T ss_pred             CHHHHHHHHHHHCCCCC-CCCEEE--------EECC------------------CHH-HHC-------CHHHHHHHHHHC
T ss_conf             67899999998403589-876899--------8057------------------288-772-------799999999776


Q ss_pred             CCCEEEECCCCHHHCCHHHHHH
Q ss_conf             9816784383110068356777
Q gi|254780812|r  199 GVDVIQIFDTHAGCLGEHEFEN  220 (346)
Q Consensus       199 Gad~iqIFDs~ag~Ls~~~f~~  220 (346)
                      |+|.+-|-|     |++++-++
T Consensus       122 GvdGlIipD-----LP~eE~~~  138 (278)
T PRK13116        122 GADSILLPD-----VPVREGAP  138 (278)
T ss_pred             CCCEEEECC-----CCHHHHHH
T ss_conf             975899469-----99788899


No 30 
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830   Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=95.66  E-value=0.022  Score=37.59  Aligned_cols=52  Identities=21%  Similarity=0.315  Sum_probs=38.6

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             999777775498167843831100683567776127226899998630886236024311
Q gi|254780812|r  189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG  248 (346)
Q Consensus       189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g  248 (346)
                      ++--+.-++||||-|+|.|| .|.++|+-+.+.+    |+|.+.+|+   +.|+..||.+
T Consensus       146 Ik~~k~A~eAGADRi~~~DT-VGV~~P~km~~l~----k~~k~~~kK---d~~~sVHCHN  197 (371)
T TIGR02090       146 IKVFKKAEEAGADRINVADT-VGVLTPQKMEELI----KKIKENVKK---DLPVSVHCHN  197 (371)
T ss_pred             HHHHHHHHHCCCCEEEECCC-CCCCCHHHHHHHH----HHHHHHHCC---CCCEEEEEEC
T ss_conf             99987133216777550785-5636826799999----999986358---8705886208


No 31 
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276   This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=95.59  E-value=0.26  Score=30.14  Aligned_cols=195  Identities=14%  Similarity=0.174  Sum_probs=124.4

Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH-
Q ss_conf             1024532011114799999999612467765246775301372228999999999999997777754981678438311-
Q gi|254780812|r  132 KKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHA-  210 (346)
Q Consensus       132 ~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~a-  210 (346)
                      +.|- ++|+=|=-.||-|+++          ..-    -+ +..--+..-+.+.-++.+=+...-+||+.+|||=++.= 
T Consensus       564 QSLT-~KpVKGMLTGPVTIL~----------WSF----~R-~D~p~~~~A~QIALAlrdEV~DLE~AGI~iIQiDEPALR  627 (778)
T TIGR01371       564 QSLT-SKPVKGMLTGPVTILN----------WSF----VR-DDIPRKEIADQIALALRDEVLDLEEAGIKIIQIDEPALR  627 (778)
T ss_pred             CCCC-CCCCCCCCCCCHHCCC----------CCC----CC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHC
T ss_conf             2146-8897765683211035----------535----55-688879999999999999999998769817985407850


Q ss_pred             -HH----CCH-HHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC-CCCCCHHHHHCCCCCCEEECCCCC-CHHHHHHHCCC
Q ss_conf             -00----683-56777612722689999863088623602431-100001342014787223046779-98999970798
Q gi|254780812|r  211 -GC----LGE-HEFENYAARSVGRIISAVRRKYPNAKFISFAK-GAGYMLKNYRRLTDSNAIGLDWSV-PLSFALELQKE  282 (346)
Q Consensus       211 -g~----Ls~-~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~-g~~~~l~~~~~~~g~d~isiD~~~-dl~~a~~~~~~  282 (346)
                       |+    =.- ..|-+|+..--+=-...++... .+ .-|+|= .-+..+..+.++ .+|||||...- +++-...+-.-
T Consensus       628 EgLPLR~~d~h~~YL~WAV~aFrla~sgV~~~T-QI-HTHMCYSeFn~II~~I~~L-DADVIsIE~SRS~~~lL~~f~~~  704 (778)
T TIGR01371       628 EGLPLRKSDWHSEYLDWAVEAFRLATSGVKDET-QI-HTHMCYSEFNDIIEAIAAL-DADVISIEASRSDMELLDAFKNI  704 (778)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-CC-CCCCCCCCHHHHHHHHHHC-CCCCEEHHHCCCCHHHHHHHHHH
T ss_conf             788877431104457899998777524888886-63-4433337743799988432-58710031104755799998520


Q ss_pred             EEEECCCCHH--HHCCC----HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH---HHHHHHHHHHHHCC
Q ss_conf             4696888846--77099----8899999999999732599289608976336688---99999999997306
Q gi|254780812|r  283 GPVQGNLDPM--RLVVG----NQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDP---KNVLDLVKTVRSEK  345 (346)
Q Consensus       283 ~~lqGNldP~--~L~~~----~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~---eNv~~~v~~vr~~~  345 (346)
                      ...--.+=|-  -.|.+    .|++..-+.++|+..-...+=.|..||+----=+   .-++.||+|+|..|
T Consensus       705 ~~Y~~giGpGVYDIHSPRvPS~eE~~~~~~~aL~~~p~~~lWVNPDCGLKTR~~~Ev~asLkNMV~AAK~~R  776 (778)
T TIGR01371       705 FGYPNGIGPGVYDIHSPRVPSVEEMADLIEKALQVLPAERLWVNPDCGLKTRNWEEVIASLKNMVEAAKAAR  776 (778)
T ss_pred             CCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCHHHCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             364323487213226888673899999999999740055080578887877886156888999999999982


No 32 
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776    This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=95.51  E-value=0.05  Score=35.15  Aligned_cols=76  Identities=20%  Similarity=0.191  Sum_probs=51.9

Q ss_pred             HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHC----CCCCCE---
Q ss_conf             7777754981678438311006835677761272268999986308862360243110000134201----478722---
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRR----LTDSNA---  264 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~----~~g~d~---  264 (346)
                      ++..++-|+|-|+|=|- ||+|+|..-.        +++++||++++++|+-.||.-++. +-.|+-    ..|+|.   
T Consensus       156 a~~L~~~G~DSI~IKDM-aGlLTP~~AY--------ELV~alK~~~~n~pvhLH~H~TtG-mA~~AllkA~EAG~d~iDT  225 (616)
T TIGR01108       156 AKELLEMGVDSICIKDM-AGLLTPKVAY--------ELVSALKKEFGNLPVHLHSHATTG-MAEMALLKAIEAGADMIDT  225 (616)
T ss_pred             HHHHHHHCCCEEEEECC-CCCCCHHHHH--------HHHHHHHHHCCCEEEEEECCCCHH-HHHHHHHHHHHCCCCCCHH
T ss_conf             99999818860552020-0464415899--------999999742397468863247233-7999999888707880020


Q ss_pred             ----EECCCCCCHHHHH
Q ss_conf             ----3046779989999
Q gi|254780812|r  265 ----IGLDWSVPLSFAL  277 (346)
Q Consensus       265 ----isiD~~~dl~~a~  277 (346)
                          +|-....+..++.
T Consensus       226 AisS~S~gtSHPptE~l  242 (616)
T TIGR01108       226 AISSMSGGTSHPPTETL  242 (616)
T ss_pred             CCCCCCCCCCCCHHHHH
T ss_conf             05523478888747999


No 33 
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.13  E-value=0.28  Score=29.88  Aligned_cols=132  Identities=17%  Similarity=0.230  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHHCC----CHHHHHC-CHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCCCEEEECCCCCCCCCCCCH
Q ss_conf             34579999976155----3899842-799999987212876298726521332001043244337316887522233333
Q gi|254780812|r   30 RYLPEYRQIRKKFK----NFLDMCY-TPEYTVELTLQPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQ  104 (346)
Q Consensus        30 rylpey~~~r~~~~----~f~~~~~-~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~~v~f~~~~GP~~~p~~~~  104 (346)
                      |+..-+.+++.+..    .|+..+. ++|-..|+ ++-+..=|.|+.=           ||...+=+---||+|......
T Consensus         3 r~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~-i~~L~~~GaD~iE-----------LGvPfSDPvADGP~Iq~A~~r   70 (265)
T COG0159           3 RLDQKFAQLKAENRGALIPYVTAGDPDLETSLEI-IKTLVEAGADILE-----------LGVPFSDPVADGPTIQAAHLR   70 (265)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH-HHHHHHCCCCEEE-----------ECCCCCCCCCCCHHHHHHHHH
T ss_conf             4899999999737897488894889998999999-9999867988899-----------668888867668899998999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             55420567012344323787778764210245320111147999999996124677652467753013722289999999
Q gi|254780812|r  105 EIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFL  184 (346)
Q Consensus       105 ~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~l  184 (346)
                      ..     +..   -.+..+++-++.+|++ +.++|++        |+                  .|-||-....+-   
T Consensus        71 AL-----~~g---~t~~~~lel~~~~r~~-~~~~Piv--------lm------------------~Y~Npi~~~Gie---  112 (265)
T COG0159          71 AL-----AAG---VTLEDTLELVEEIRAK-GVKVPIV--------LM------------------TYYNPIFNYGIE---  112 (265)
T ss_pred             HH-----HCC---CCHHHHHHHHHHHHHC-CCCCCEE--------EE------------------EECCHHHHHHHH---
T ss_conf             99-----779---9889999999999861-8999889--------98------------------701188773599---


Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHH
Q ss_conf             9999999777775498167843831100683567776
Q gi|254780812|r  185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENY  221 (346)
Q Consensus       185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f  221 (346)
                           .|++.-.++|+|.+.|-|     |++++=.+|
T Consensus       113 -----~F~~~~~~~GvdGlivpD-----LP~ee~~~~  139 (265)
T COG0159         113 -----KFLRRAKEAGVDGLLVPD-----LPPEESDEL  139 (265)
T ss_pred             -----HHHHHHHHCCCCEEEECC-----CCHHHHHHH
T ss_conf             -----999999975998798578-----986677789


No 34 
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=94.75  E-value=0.099  Score=33.06  Aligned_cols=68  Identities=16%  Similarity=0.185  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHC-CCCEEECCCCCCCCC----HHHHHCCCCC
Q ss_conf             99997777754981678438311006835677761272268999986308-862360243110000----1342014787
Q gi|254780812|r  188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKY-PNAKFISFAKGAGYM----LKNYRRLTDS  262 (346)
Q Consensus       188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~-~~vpiI~f~~g~~~~----l~~~~~~~g~  262 (346)
                      -++.++...+.|||.|+|=|. ||+|+|..-        .+++.++|+.. |++||-+|+..++..    +..-.+ .|+
T Consensus       157 y~~~ak~l~~~G~d~i~IKDm-AGll~P~~a--------~~LV~~lk~~~g~d~pI~~HtH~T~G~~~~~~l~Aie-AGv  226 (499)
T PRK12330        157 FVEQAKRLLDMGCDSICIKDM-AALLKPQPA--------YDLVKGIKEACGPDTRVHVHAHATTGVTLVSLMKAIE-AGV  226 (499)
T ss_pred             HHHHHHHHHHCCCCEEEEECC-CCCCCHHHH--------HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHH-CCC
T ss_conf             999999999759998998475-346788999--------9999999986389983798517887469999999998-499


Q ss_pred             CEE
Q ss_conf             223
Q gi|254780812|r  263 NAI  265 (346)
Q Consensus       263 d~i  265 (346)
                      |++
T Consensus       227 Div  229 (499)
T PRK12330        227 DVV  229 (499)
T ss_pred             CEE
T ss_conf             887


No 35 
>PRK13117 consensus
Probab=94.70  E-value=0.23  Score=30.54  Aligned_cols=54  Identities=24%  Similarity=0.318  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA  198 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a  198 (346)
                      .+..+++.++.+|++.. ++|++        +++|.                  ||-     +.   .-.-+|++...++
T Consensus        77 ~~~~~~~~~~~ir~~~~-~~piv--------lM~Y~------------------N~i-----~~---~G~e~F~~~~~~a  121 (268)
T PRK13117         77 TPAQCFELLAKIRAKYP-TIPIG--------LLLYA------------------NLV-----FA---NGIDNFYARCAEA  121 (268)
T ss_pred             CHHHHHHHHHHHHCCCC-CCCEE--------EEECC------------------CHH-----HH---CCHHHHHHHHHHC
T ss_conf             69999999988500478-98779--------97326------------------289-----87---1799999999976


Q ss_pred             CCCEEEECC
Q ss_conf             981678438
Q gi|254780812|r  199 GVDVIQIFD  207 (346)
Q Consensus       199 Gad~iqIFD  207 (346)
                      |+|.+-|-|
T Consensus       122 GvdGvIipD  130 (268)
T PRK13117        122 GVDSVLIAD  130 (268)
T ss_pred             CCCEEEECC
T ss_conf             987798579


No 36 
>PRK13138 consensus
Probab=94.53  E-value=0.33  Score=29.38  Aligned_cols=21  Identities=19%  Similarity=0.256  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             2378777876421024532011
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLI  141 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLI  141 (346)
                      +..+++.++.+|+. ..++|++
T Consensus        74 ~~~~~~~~~~ir~~-~~~~piv   94 (264)
T PRK13138         74 MDKILEITAEIHKL-HPEIPLV   94 (264)
T ss_pred             HHHHHHHHHHHCCC-CCCCCEE
T ss_conf             88974467760335-8988889


No 37 
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=94.34  E-value=0.33  Score=29.39  Aligned_cols=54  Identities=24%  Similarity=0.299  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf             9999977777549816784383110068356777612722689999863088623602431100
Q gi|254780812|r  187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG  250 (346)
Q Consensus       187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~  250 (346)
                      .-.++++...+.|+|-|+|=|- ||+|+|..-.        ++++.+|+..+ +|+..||..++
T Consensus       157 ~yv~~akel~~~g~DSIciKDm-aGlltP~~ay--------elVk~iK~~~~-~pv~lHtH~Ts  210 (472)
T COG5016         157 YYVELAKELLEMGVDSICIKDM-AGLLTPYEAY--------ELVKAIKKELP-VPVELHTHATS  210 (472)
T ss_pred             HHHHHHHHHHHCCCCEEEEECC-CCCCCHHHHH--------HHHHHHHHHCC-CEEEEECCCCC
T ss_conf             9999999999727987884000-0269868899--------99999997459-70698504555


No 38 
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.22  E-value=0.14  Score=31.99  Aligned_cols=71  Identities=14%  Similarity=0.112  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCC-H---HHHHCCCC
Q ss_conf             9999997777754981678438311006835677761272268999986308862360243110000-1---34201478
Q gi|254780812|r  186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYM-L---KNYRRLTD  261 (346)
Q Consensus       186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~-l---~~~~~~~g  261 (346)
                      +..++.++...++|||.|+|-|+ +|+|.|..-.        +++.++|+.. ++||-.||.++..+ .   ..-.+ .|
T Consensus       154 ~yyv~~a~~l~~~Gad~I~ikD~-aGll~P~~~~--------eLV~aLk~~~-~lpI~~HtH~t~Gla~an~laAie-AG  222 (463)
T PRK12331        154 DYFVKLAKEMQEIGADSICIKDM-AGILTPYVAY--------ELVKCIKENV-TVPLEVHTHATSGIAEMTYLKAIE-AG  222 (463)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECC-CCCCCHHHHH--------HHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHH-CC
T ss_conf             99999999999649988998678-6776889999--------9999999744-985699836887579999999998-49


Q ss_pred             CCEEEC
Q ss_conf             722304
Q gi|254780812|r  262 SNAIGL  267 (346)
Q Consensus       262 ~d~isi  267 (346)
                      +|++.+
T Consensus       223 aDivD~  228 (463)
T PRK12331        223 ADIIDT  228 (463)
T ss_pred             CCEEEE
T ss_conf             999962


No 39 
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=93.94  E-value=0.18  Score=31.26  Aligned_cols=70  Identities=17%  Similarity=0.236  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCC----HHHHHCCCC
Q ss_conf             9999997777754981678438311006835677761272268999986308862360243110000----134201478
Q gi|254780812|r  186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYM----LKNYRRLTD  261 (346)
Q Consensus       186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~----l~~~~~~~g  261 (346)
                      +.-.+.++...++|||.|+|=|+ ||+|.|..-.        +++.++|+ .+++|+-.|+.++..+    +..-.+ .|
T Consensus       163 ~yy~~~ak~l~~~Gad~I~iKDm-aGlL~P~~a~--------~LV~~lK~-~~~iPI~~HtH~t~Gla~a~~laAie-AG  231 (468)
T PRK12581        163 NYYLSLVKELVEMGADSICIKDM-AGILTPKAAK--------ELVSGIKA-MTNLPLIVHTHATSGISQMTYLAAVE-AG  231 (468)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECC-CCCCCHHHHH--------HHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHH-CC
T ss_conf             99999999999739998998478-7776889999--------99999983-67986599825887549999999998-19


Q ss_pred             CCEEE
Q ss_conf             72230
Q gi|254780812|r  262 SNAIG  266 (346)
Q Consensus       262 ~d~is  266 (346)
                      +|++.
T Consensus       232 aDiVD  236 (468)
T PRK12581        232 ADRID  236 (468)
T ss_pred             CCEEE
T ss_conf             99997


No 40 
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase; InterPro: IPR010138   This entry represents LpxH, or UDP-2,3-diacylglucosamine hydrolase (or pyrophosphatase), which is an essential enzyme in Escherichia coli that catalyses the fourth step in lipid A biosynthesis. This reaction involves pyrophosphate bond hydrolysis of the precursor UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate and UMP . Several Gram-negative bacteria have homologues of LpxH and/or LpxH2, while others have only distant orthologues of LpxH or LpxH2, or lack these enzymes altogether .; GO: 0016462 pyrophosphatase activity, 0009245 lipid A biosynthetic process, 0005737 cytoplasm.
Probab=93.89  E-value=0.043  Score=35.60  Aligned_cols=75  Identities=15%  Similarity=0.278  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEE----CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCH--HHHH
Q ss_conf             9999999977777549816784----383110068356777612722689999863088623602431100001--3420
Q gi|254780812|r  184 LSDVSAEYLIAQIHAGVDVIQI----FDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYML--KNYR  257 (346)
Q Consensus       184 lt~~~~~yl~~Qi~aGad~iqI----FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l--~~~~  257 (346)
                      ||..-++|++.++..+||+++|    ||-|-|-=.+..+.+=+..-++++.+    .  |||+ ||.+|+--.|  +.++
T Consensus        16 iTa~Fl~FL~~~A~G~AdALYILGDLFeaWIGDD~~~~l~~~va~~~r~vsd----~--GV~~-YF~~GNRDFLiG~~Fa   88 (241)
T TIGR01854        16 ITALFLDFLREEARGKADALYILGDLFEAWIGDDDPSALARSVAEAIRAVSD----Q--GVPC-YFMHGNRDFLIGKRFA   88 (241)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHCCHHHCEECCCCCCHHHHHHHHHHHHHHC----C--CEEE-EEECCCCHHHHHHHHH
T ss_conf             8999999987523340000221012000114689721799999999998732----8--9079-8405985156668999


Q ss_pred             CCCCCCEE
Q ss_conf             14787223
Q gi|254780812|r  258 RLTDSNAI  265 (346)
Q Consensus       258 ~~~g~d~i  265 (346)
                      +.+|+..+
T Consensus        89 r~aG~~LL   96 (241)
T TIGR01854        89 REAGMTLL   96 (241)
T ss_pred             HHHCCEEC
T ss_conf             97088107


No 41 
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=93.78  E-value=0.7  Score=27.09  Aligned_cols=35  Identities=14%  Similarity=0.162  Sum_probs=16.5

Q ss_pred             ECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEE
Q ss_conf             43831100683567776127226899998630886236
Q gi|254780812|r  205 IFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKF  242 (346)
Q Consensus       205 IFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpi  242 (346)
                      +||+-+--++..+  +.+... -+.++.+|+.+|++.+
T Consensus       158 ~~DpLv~~i~t~~--~~~~~~-leair~ik~~~P~v~t  192 (268)
T PRK07535        158 YIDPLVLPLSAAQ--TAGVEV-LETIRRIKELYPKVHT  192 (268)
T ss_pred             EEECCCCEEECCC--HHHHHH-HHHHHHHHHHCCCCCE
T ss_conf             8845512100680--789999-9999999987877775


No 42 
>pfam08267 Meth_synt_1 Cobalamin-independent synthase, N-terminal domain. The N-terminal domain and C-terminal domains of cobalamin-independent synthases together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilize a loop from the C-terminal domain.
Probab=93.55  E-value=0.76  Score=26.82  Aligned_cols=163  Identities=17%  Similarity=0.127  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             23787778764210245320111147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG  199 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG  199 (346)
                      +..+.||.. +..   .-+|+|   -||+|...-      +|...      ..+   -..+++.++.+-.+-++...++|
T Consensus       137 ~~e~~eA~~-lG~---~~kPVL---vGPvTfL~L------sk~~~------~~~---~~~ll~~ll~~Y~~ll~~L~~~G  194 (310)
T pfam08267       137 LEEYLEAKA-LGI---KAKPVL---LGPLTFLWL------SKNKG------GKD---RLELLEALLPVYKELLKELAAAG  194 (310)
T ss_pred             HHHHHHHHH-CCC---CCCCEE---ECCHHHHHH------HCCCC------CCC---HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999997-499---888668---551899987------50257------899---99999999999999999998779


Q ss_pred             CCEEEECCCCH-HHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCCCCHHHHHCCCCCCEEECCCCCC---HH
Q ss_conf             81678438311-00683567776127226899998630886236-024311000013420147872230467799---89
Q gi|254780812|r  200 VDVIQIFDTHA-GCLGEHEFENYAARSVGRIISAVRRKYPNAKF-ISFAKGAGYMLKNYRRLTDSNAIGLDWSVP---LS  274 (346)
Q Consensus       200 ad~iqIFDs~a-g~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~~~l~~~~~~~g~d~isiD~~~d---l~  274 (346)
                      |+-|||=+|.- .-++++.-+.|..-| +++.+   ...+.+-+ -||. +....++.+.+ .+++++++|-...   ++
T Consensus       195 ~~wVQiDEP~Lv~dl~~~~~~~~~~~Y-~~L~~---~~~~kill~TYFg-~~~~~~~~l~~-lpv~gl~lDlv~~~~~l~  268 (310)
T pfam08267       195 AEWVQIDEPALVLDLPKEWLEAFKEAY-AELAS---KGGLKLLLATYFG-SVADALELLAS-LPVDGLGLDLVRGPENLA  268 (310)
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHH-HHHHH---CCCCCEEEECCCC-CHHHHHHHHHC-CCCCEEEEECCCCHHHHH
T ss_conf             987983277021579999999999999-99971---7898689982556-78889999976-997479986057865799


Q ss_pred             HHHH-HCC-CEEEECCCCHHHH-CCCHHHHHHHHHHHHH
Q ss_conf             9997-079-8469688884677-0998899999999999
Q gi|254780812|r  275 FALE-LQK-EGPVQGNLDPMRL-VVGNQVMIDGVNAILD  310 (346)
Q Consensus       275 ~a~~-~~~-~~~lqGNldP~~L-~~~~e~i~~~~~~~l~  310 (346)
                      .... ... +...-|=+|-.-. ..+-+...+.+.++.+
T Consensus       269 ~v~~~~p~~k~L~aGvVdGRNIWr~dl~~~l~~l~~l~~  307 (310)
T pfam08267       269 ALKKGFPADKVLSAGVIDGRNIWRADLEKALALLETLAE  307 (310)
T ss_pred             HHHHHCCCCCEEEEEEECCEECCHHCHHHHHHHHHHHHH
T ss_conf             999618999789999865710443279999999999999


No 43 
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=93.55  E-value=0.76  Score=26.82  Aligned_cols=52  Identities=13%  Similarity=0.034  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf             9999999777775498167843831100683567776127226899998630886236024
Q gi|254780812|r  185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF  245 (346)
Q Consensus       185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f  245 (346)
                      |.-++++++.--++|||++++.=|.-.-.+.+    -...|.++|.++.     +.|++.|
T Consensus        82 t~~~i~~a~~A~~~Gadav~v~~P~y~~~s~~----~l~~~f~~ia~~~-----~~Pi~lY  133 (292)
T PRK03170         82 TAEAIELTKFAEKAGADGALVVTPYYNKPTQE----GLYQHFKAIAEAT-----DLPIILY  133 (292)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH----HHHHHHHHHHHCC-----CCCEEEE
T ss_conf             99999999989875999899617768899999----9999999998635-----9976987


No 44 
>PRK13114 consensus
Probab=93.30  E-value=0.38  Score=28.97  Aligned_cols=63  Identities=21%  Similarity=0.261  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA  198 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a  198 (346)
                      .+..+++-++.+|++.. ++|+|-        ++|                  -||     ++..-   .-.|++..-++
T Consensus        73 ~l~~~f~~v~~~r~~~~-~~Pivl--------M~Y------------------~N~-----i~~~G---~~~F~~~~~~a  117 (266)
T PRK13114         73 TTADIFRIAAEFRQRHP-EVPLVL--------MGY------------------ANP-----MVRRG---PDWFAAECKKA  117 (266)
T ss_pred             CHHHHHHHHHHHHHCCC-CCCEEE--------EEE------------------HHH-----HHHHH---HHHHHHHHHHC
T ss_conf             79999999999874189-988799--------863------------------019-----99864---99999999974


Q ss_pred             CCCEEEECCCCHHHCCHHHHHHH
Q ss_conf             98167843831100683567776
Q gi|254780812|r  199 GVDVIQIFDTHAGCLGEHEFENY  221 (346)
Q Consensus       199 Gad~iqIFDs~ag~Ls~~~f~~f  221 (346)
                      |+|.+-|-|     |++++-.+|
T Consensus       118 GvdG~IipD-----LP~eE~~~~  135 (266)
T PRK13114        118 GVDGVICVD-----IPPEEDAEL  135 (266)
T ss_pred             CCCEEEECC-----CCHHHHHHH
T ss_conf             997798458-----997888999


No 45 
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=93.28  E-value=0.84  Score=26.53  Aligned_cols=22  Identities=14%  Similarity=0.238  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             32378777876421024532011
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLI  141 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLI  141 (346)
                      .+..+++.++.+|++.. ++|++
T Consensus        69 ~~~~~~~~~~~~r~~~~-~~piv   90 (258)
T pfam00290        69 TLDQTLELVEEIRNKGT-SVPIV   90 (258)
T ss_pred             CHHHHHHHHHHHHHCCC-CCCEE
T ss_conf             69999999998551289-98889


No 46 
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=93.22  E-value=0.86  Score=26.47  Aligned_cols=189  Identities=14%  Similarity=0.169  Sum_probs=113.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH-
Q ss_conf             0245320111147999999996124677652467753013722289999999999999977777549816784383110-
Q gi|254780812|r  133 KLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG-  211 (346)
Q Consensus       133 ~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag-  211 (346)
                      .|. ++|+=|-..||.|+...          .    |.++ ...-...-..+.-++.+=+...-+||+.+|||=++.-- 
T Consensus       542 SlT-~KpvKGMLTGPVTIL~W----------S----FvRd-D~pr~~~a~QiALAlrdEV~dLE~aGI~iIQIDEpAlRE  605 (756)
T PRK05222        542 SLT-DKPVKGMLTGPVTILNW----------S----FVRD-DQPRKETAKQIALAIRDEVLDLEAAGIKIIQIDEPALRE  605 (756)
T ss_pred             HCC-CCCCCEEECCCHHHHCC----------C----CCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHC
T ss_conf             713-89743330463455302----------5----3146-779999999999999999999998699789846168755


Q ss_pred             HCC-----HHHHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCC-CCCCHHHHHCCCCCCEEECCCCC-C--HHHHHHHCC
Q ss_conf             068-----3567776127226899998630886236-024311-00001342014787223046779-9--899997079
Q gi|254780812|r  212 CLG-----EHEFENYAARSVGRIISAVRRKYPNAKF-ISFAKG-AGYMLKNYRRLTDSNAIGLDWSV-P--LSFALELQK  281 (346)
Q Consensus       212 ~Ls-----~~~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g-~~~~l~~~~~~~g~d~isiD~~~-d--l~~a~~~~~  281 (346)
                      -|+     -..|.+|+.+..+--...++..   +-| .|.|=. -+..++.+.. .++|+||+...- +  +-.+.+.. 
T Consensus       606 gLPLr~~~~~~YL~WAv~aFrlats~v~~~---TQIHTHMCYSeF~dIi~aI~~-mDADVIsiE~sRS~~ell~~f~~~-  680 (756)
T PRK05222        606 GLPLRRSDWDAYLDWAVEAFRLATSGVKDE---TQIHTHMCYSEFNDIIDAIAA-LDADVISIETSRSDMELLDAFEDF-  680 (756)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCC---CEEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHC-
T ss_conf             688774367899999999999872478977---723641246627999999985-898757898317767389999867-


Q ss_pred             CEEEECCCCHHH--HC----CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHH---HHHHHHHHHHC
Q ss_conf             846968888467--70----99889999999999973259928960897633668899---99999999730
Q gi|254780812|r  282 EGPVQGNLDPMR--LV----VGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKN---VLDLVKTVRSE  344 (346)
Q Consensus       282 ~~~lqGNldP~~--L~----~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eN---v~~~v~~vr~~  344 (346)
                        .....+-|-+  .+    -+.|++.+..++.++.......=.|..||+---.-+|.   ++.||+++|.-
T Consensus       681 --~y~~~IGpGVYDIHSPrvPsveEi~~~i~~al~~i~~e~lWVNPDCGLKTR~w~Et~~aL~nMV~Aa~~~  750 (756)
T PRK05222        681 --GYPNEIGPGVYDIHSPRVPSVEEIEALLRKALEVIPAERLWVNPDCGLKTRGWPETEAALKNMVAAAKEL  750 (756)
T ss_pred             --CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             --9976677800125789999989999999999971899888889888877698288899999999999999


No 47 
>PRK13119 consensus
Probab=92.95  E-value=0.94  Score=26.20  Aligned_cols=63  Identities=16%  Similarity=0.265  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA  198 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a  198 (346)
                      .+..+++.++.+|++- .++|++        +++|.                  ||     ++..   -.-+|++..-++
T Consensus        75 ~~~~~~~~~~~ir~~~-~~~piv--------lMtY~------------------N~-----i~~y---G~e~F~~~~~~~  119 (261)
T PRK13119         75 SLRDVLDVVRKFRETD-TQTPVV--------LMGYL------------------NP-----VHKM---GYREFAQEAAKA  119 (261)
T ss_pred             CHHHHHHHHHHHHCCC-CCCCEE--------EEECH------------------HH-----HHHH---HHHHHHHHHHHC
T ss_conf             7889999999865148-998989--------98403------------------78-----9886---299999999975


Q ss_pred             CCCEEEECCCCHHHCCHHHHHHH
Q ss_conf             98167843831100683567776
Q gi|254780812|r  199 GVDVIQIFDTHAGCLGEHEFENY  221 (346)
Q Consensus       199 Gad~iqIFDs~ag~Ls~~~f~~f  221 (346)
                      |+|.+-|-|     |+.++.++|
T Consensus       120 GvdGvIipD-----LP~ee~~~~  137 (261)
T PRK13119        120 GVDGVLTVD-----SPVETIDPL  137 (261)
T ss_pred             CCCEEEECC-----CCHHHHHHH
T ss_conf             985798368-----997887999


No 48 
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393   Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , .   Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=92.88  E-value=0.2  Score=30.85  Aligned_cols=64  Identities=19%  Similarity=0.337  Sum_probs=46.5

Q ss_pred             HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC-CCHHHHHCCCCCCEEECCCC
Q ss_conf             77777549816784383110068356777612722689999863088623602431100-00134201478722304677
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG-YMLKNYRRLTDSNAIGLDWS  270 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~-~~l~~~~~~~g~d~isiD~~  270 (346)
                      +..=++||||+|++ |-    .+|++        +++.++.++.+.|++ ++=-++|.+ ..+..|+. +|.|+||+..-
T Consensus       199 a~eA~~AGADiImL-DN----m~p~~--------~~~av~~~~~~~p~~-~~EaSGGitl~n~~~ya~-~gVD~IS~G~l  263 (276)
T TIGR00078       199 AEEAAEAGADIIML-DN----MKPEE--------IKEAVELLKGRNPNV-LVEASGGITLDNIEEYAE-TGVDVISSGAL  263 (276)
T ss_pred             HHHHHHCCCCEEEC-CC----CCHHH--------HHHHHHHHHHCCCEE-EEEEECCCCHHHHHHHHH-CCCCEEECCCH
T ss_conf             99999709959980-69----89479--------999999997029908-999836998789999840-89758832741


No 49 
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=92.78  E-value=0.34  Score=29.30  Aligned_cols=70  Identities=16%  Similarity=0.151  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCC-HHHHH--CCCCC
Q ss_conf             9999997777754981678438311006835677761272268999986308862360243110000-13420--14787
Q gi|254780812|r  186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYM-LKNYR--RLTDS  262 (346)
Q Consensus       186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~-l~~~~--~~~g~  262 (346)
                      +.-.+.++...+.|||.|+|=|. ||+|.|..        ..+++.++|+.. ++||-+|+.++... .-.+.  -..|+
T Consensus       155 ~yy~~~a~~l~~~G~d~i~iKDm-aGll~P~~--------a~~LV~alk~~~-~lpI~~HtH~t~G~~~a~~l~A~eAGv  224 (580)
T PRK09282        155 ETWVDLAKQLEEMGCDSICIKDM-AGLLTPYA--------AYELVSALKKEV-DLPVHLHCHATTGLATMTYLKAVEAGV  224 (580)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECC-CCCCCHHH--------HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf             99999999999749988997266-55789899--------999999999861-981699824776479999999998488


Q ss_pred             CEE
Q ss_conf             223
Q gi|254780812|r  263 NAI  265 (346)
Q Consensus       263 d~i  265 (346)
                      |++
T Consensus       225 div  227 (580)
T PRK09282        225 DIL  227 (580)
T ss_pred             CEE
T ss_conf             867


No 50 
>PRK12999 pyruvate carboxylase; Reviewed
Probab=92.27  E-value=0.66  Score=27.27  Aligned_cols=108  Identities=16%  Similarity=0.209  Sum_probs=62.6

Q ss_pred             HCCCCCCCHHHHHHHHCCCHHHHHHHHH--H---------H-------------HHHHHHHHHHHHHCCCCEEEECCCC-
Q ss_conf             1246776524677530137222899999--9---------9-------------9999999777775498167843831-
Q gi|254780812|r  155 ISGGFIKDHGQNRVFAYQNSRAFNWLLD--F---------L-------------SDVSAEYLIAQIHAGVDVIQIFDTH-  209 (346)
Q Consensus       155 ieG~~sk~~~~~~~~~~~~p~~~~~ll~--~---------l-------------t~~~~~yl~~Qi~aGad~iqIFDs~-  209 (346)
                      +|--|--.|....+|+.++|  |++|-.  .         |             -+++..|++.-+++|.|++-|||+- 
T Consensus       575 lE~WGGATfDv~~RfL~EdP--w~Rl~~lr~~~pn~~~QmLlRg~N~vGY~~Ypdnvv~~fv~~a~~~GiDvfRiFD~LN  652 (1147)
T PRK12999        575 LEMWGGATFDVAYRFLKEDP--WERLAELREAMPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLN  652 (1147)
T ss_pred             EEECCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             87127863899998755692--8999999986777346653122444576679737999999999983989116731344


Q ss_pred             --------------------------HHHCCH-------HHHHHHHC--------------------C-CHHHHHHHHHH
Q ss_conf             --------------------------100683-------56777612--------------------7-22689999863
Q gi|254780812|r  210 --------------------------AGCLGE-------HEFENYAA--------------------R-SVGRIISAVRR  235 (346)
Q Consensus       210 --------------------------ag~Ls~-------~~f~~f~~--------------------p-~~kkI~~~ik~  235 (346)
                                                +++++|       ++|-+.+.                    | ...+++.++|+
T Consensus       653 ~~~nm~~~i~~v~~~g~~~e~aicyTGdi~dp~~~~~~l~yy~~~a~~l~~~G~~~l~IKDMAGLl~P~aa~~LV~aLk~  732 (1147)
T PRK12999        653 WVENMRVAIDAVRETGKVAEAAICYTGDILDPARAKYDLDYYVDLAKELEAAGAHILAIKDMAGLLKPAAAYKLVSALKE  732 (1147)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             66778999999997098899998742577787888766999999999999768988997144546887999999999986


Q ss_pred             HCCCCEEECCCCCCCCC-HHHHHC--CCCCCEE
Q ss_conf             08862360243110000-134201--4787223
Q gi|254780812|r  236 KYPNAKFISFAKGAGYM-LKNYRR--LTDSNAI  265 (346)
Q Consensus       236 ~~~~vpiI~f~~g~~~~-l~~~~~--~~g~d~i  265 (346)
                      . +++||-+|+.+++.. .-.+..  ..|+|++
T Consensus       733 ~-~~lPIhlHtHdTsG~~~at~laA~eAGvDiV  764 (1147)
T PRK12999        733 E-VDLPIHLHTHDTSGNGLATYLAAAEAGVDIV  764 (1147)
T ss_pred             H-CCCCEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             1-6984598436788558999999998599989


No 51 
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=92.22  E-value=0.5  Score=28.12  Aligned_cols=54  Identities=19%  Similarity=0.188  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHH-CCCCEEECCCCCC
Q ss_conf             99999777775498167843831100683567776127226899998630-8862360243110
Q gi|254780812|r  187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRK-YPNAKFISFAKGA  249 (346)
Q Consensus       187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~-~~~vpiI~f~~g~  249 (346)
                      .+.+.++...++|||.|.|-|| +|.+.|++..        ++++.+++. .+++|+-.|+.++
T Consensus       145 ~l~~~a~~~~~~Gad~I~l~DT-~G~~~P~~v~--------~~v~~l~~~l~~~i~igfH~HNn  199 (337)
T PRK08195        145 KLAEQAKLMESYGAQCVYVVDS-AGALLPDDVR--------ARVRALRAALKPDTQVGFHGHHN  199 (337)
T ss_pred             HHHHHHHHHHHCCCCEEEECCC-CCCCCHHHHH--------HHHHHHHHHCCCCCEEEEEECCC
T ss_conf             9999999998659999997898-7667999999--------99999998649985499985388


No 52 
>PRK13131 consensus
Probab=92.12  E-value=1.2  Score=25.49  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             2378777876421024532011
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLI  141 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLI  141 (346)
                      +...++.++.+|+. ..++|++
T Consensus        71 ~~~~~~~~~~~r~~-~~~~piv   91 (257)
T PRK13131         71 MAKNFQLLKKIRDY-NHHIPIG   91 (257)
T ss_pred             HHHHHHHHHHHHHC-CCCCCEE
T ss_conf             89999999998704-9998889


No 53 
>KOG2263 consensus
Probab=91.98  E-value=0.89  Score=26.35  Aligned_cols=159  Identities=18%  Similarity=0.214  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCCCH--HH-C---CHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC-CCCCHH
Q ss_conf             99999999997777754981678438311--00-6---83567776127226899998630886236024311-000013
Q gi|254780812|r  182 DFLSDVSAEYLIAQIHAGVDVIQIFDTHA--GC-L---GEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG-AGYMLK  254 (346)
Q Consensus       182 ~~lt~~~~~yl~~Qi~aGad~iqIFDs~a--g~-L---s~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g-~~~~l~  254 (346)
                      ..+.-.+.+-..-.-++|+.+|||=++.-  |+ |   ....|.+|+....+--...+++.. .+ ..|||-. -+..+.
T Consensus       582 ~QiALaikDEV~DLEkaGikVIQiDE~ALREGLPLR~aE~~~Yl~WAv~aFRi~~sgVqd~T-QI-HtH~CYSdfndi~~  659 (765)
T KOG2263         582 YQIALAIKDEVEDLEKAGIKVIQIDEAALREGLPLRKAEHSFYLDWAVHAFRITNSGVQDST-QI-HTHMCYSDFNDIIH  659 (765)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-HH-HHHHHHHCCCHHHH
T ss_conf             99999888788789872965999570787558975235688899999888533043456651-01-22101400237888


Q ss_pred             HHHCCCCCCEEECCCCCCHHHHHHHCCCEEEEC-CCCHHH--HC----CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf             420147872230467799899997079846968-888467--70----99889999999999973259928960897633
Q gi|254780812|r  255 NYRRLTDSNAIGLDWSVPLSFALELQKEGPVQG-NLDPMR--LV----VGNQVMIDGVNAILDVLGSGPFIFNLGHGITP  327 (346)
Q Consensus       255 ~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lqG-NldP~~--L~----~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p  327 (346)
                      .+.+ ..+|++++.+.-+-+.......+.+--| .+-|-+  ++    -+.+++.+...+++......-+=.|..||+--
T Consensus       660 ~I~~-mDADVitIEnSrsD~kllsvf~~gvkY~~~IGpG~~DIHSPRiPs~dE~~erI~~~l~~~~~~~lWvNPDCGLKT  738 (765)
T KOG2263         660 SIID-MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIAERINKMLAVLPQNILWVNPDCGLKT  738 (765)
T ss_pred             HHHH-CCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
T ss_conf             9885-457679975475648999998614765677687500046899998789999999999726402277778867444


Q ss_pred             ----CCCHHHHHHHHHHHHHC
Q ss_conf             ----66889999999999730
Q gi|254780812|r  328 ----QVDPKNVLDLVKTVRSE  344 (346)
Q Consensus       328 ----~tp~eNv~~~v~~vr~~  344 (346)
                          +|.+ .++.||++.|.+
T Consensus       739 R~~~E~~~-~L~~Mv~AAk~~  758 (765)
T KOG2263         739 RGYTEVKP-ALKNMVAAAKLI  758 (765)
T ss_pred             CCCCCCHH-HHHHHHHHHHHH
T ss_conf             88730208-899999999999


No 54 
>PRK13123 consensus
Probab=91.82  E-value=1.3  Score=25.26  Aligned_cols=17  Identities=24%  Similarity=0.305  Sum_probs=12.9

Q ss_pred             HHHHHHHCCCCEEEECC
Q ss_conf             97777754981678438
Q gi|254780812|r  191 YLIAQIHAGVDVIQIFD  207 (346)
Q Consensus       191 yl~~Qi~aGad~iqIFD  207 (346)
                      |++...++|+|.+-|-|
T Consensus       109 F~~~~~~~GvdGvIipD  125 (256)
T PRK13123        109 FVEDLAETGVKGLIIPD  125 (256)
T ss_pred             HHHHHHHCCCCEEECCC
T ss_conf             99999974997897379


No 55 
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=91.76  E-value=1.3  Score=25.22  Aligned_cols=133  Identities=15%  Similarity=0.169  Sum_probs=59.3

Q ss_pred             HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC-CCCCC----------CCCHHHHHCCC
Q ss_conf             77777549816784383110068356777612722689999863088623602-43110----------00013420147
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFIS-FAKGA----------GYMLKNYRRLT  260 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~-f~~g~----------~~~l~~~~~~~  260 (346)
                      +.+.+++|||.+ +||+..++.           -.+..+..+|+.. +.|++. |+-..          ...+..+.. .
T Consensus       132 ~~~L~e~GvD~i-llET~~dl~-----------E~~~Al~aar~~~-~lPvi~s~t~~~~G~t~~G~~~~~a~~~l~~-~  197 (608)
T PRK08645        132 IDALLEEGVDGL-LLETFYDLE-----------ELLEALKAARKKT-DLPIIAQVAFHEDGVTQNGTSLEEALKQLVA-L  197 (608)
T ss_pred             HHHHHHCCCCEE-EEEHHCCHH-----------HHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCHHHHHHHHHC-C
T ss_conf             999975799899-986305999-----------9999999999756-9979999998899808999979999999862-8


Q ss_pred             CCCEEECCCCCCHHHH----HHH----CCCEEEECCC-CHHH-----HC-CCHHHHHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf             8722304677998999----970----7984696888-8467-----70-998899999999999732599289608976
Q gi|254780812|r  261 DSNAIGLDWSVPLSFA----LEL----QKEGPVQGNL-DPMR-----LV-VGNQVMIDGVNAILDVLGSGPFIFNLGHGI  325 (346)
Q Consensus       261 g~d~isiD~~~dl~~a----~~~----~~~~~lqGNl-dP~~-----L~-~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi  325 (346)
                      |+|++++.=.......    +++    ...+..+-|- -|..     .+ .++|.+.+.++++.+.+.+   |..==|| 
T Consensus       198 gad~VG~NC~~GP~~m~~~l~~l~~~~~~pl~v~PNAGlP~~~~gr~~Y~~tPe~Fa~~a~~~~~~Ga~---iIGGCCG-  273 (608)
T PRK08645        198 GADVVGLNCGLGPYHMLEALKRIELPADAPLSAYPNAGLPEYVEGRYVYSANPEYFAEYAREFVEEGVR---LIGGCCG-  273 (608)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCC---EEEECCC-
T ss_conf             998898879789999999999987425981899788999887898302789999999999999985997---9975779-


Q ss_pred             CCCCCHHHHHHHHHHHHHCC
Q ss_conf             33668899999999997306
Q gi|254780812|r  326 TPQVDPKNVLDLVKTVRSEK  345 (346)
Q Consensus       326 ~p~tp~eNv~~~v~~vr~~~  345 (346)
                         |.||.++++-+++|..+
T Consensus       274 ---TTPeHIraia~al~~~~  290 (608)
T PRK08645        274 ---TTPEHIRAMKEALRGLK  290 (608)
T ss_pred             ---CCHHHHHHHHHHHCCCC
T ss_conf             ---99999999999844789


No 56 
>PRK13133 consensus
Probab=91.73  E-value=1.3  Score=25.19  Aligned_cols=104  Identities=18%  Similarity=0.261  Sum_probs=50.3

Q ss_pred             HHHHHHCCCCEEEECCCCEECCHHHCCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC---CC
Q ss_conf             212876298726521332001043244337316887522233333554205670123443237877787642102---45
Q gi|254780812|r   60 LQPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKL---PN  136 (346)
Q Consensus        60 l~p~~r~~~DaaIlFsDIl~~~ealG~~v~f~~~~GP~~~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l---~~  136 (346)
                      +.-+.+-|.|..=           +|....-+---||++.......     ....   -.+..+++.++.+|...   .-
T Consensus        35 i~~l~~~GaDiiE-----------lGiPFSDP~ADGpvIQ~A~~rA-----L~~G---~~~~~~~~~~~~~r~~~~~~~~   95 (267)
T PRK13133         35 LEALQESGADIIE-----------LGIPYSDPIGDGPVIQNAAHTA-----IRNG---VSVRSLLELVRKARNGEGCRKI   95 (267)
T ss_pred             HHHHHHCCCCEEE-----------ECCCCCCCCCCCHHHHHHHHHH-----HHCC---CCHHHHHHHHHHHHHCCCCCCC
T ss_conf             9999975999899-----------7899888666689999999999-----9869---9899999999999730243466


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHH
Q ss_conf             32011114799999999612467765246775301372228999999999999997777754981678438311006835
Q gi|254780812|r  137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEH  216 (346)
Q Consensus       137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~  216 (346)
                      ++|++        +++|+                  ||     ++..   -.-.|++...++|+|.+-|-|     |+++
T Consensus        96 ~~Piv--------lMtY~------------------N~-----i~~y---G~e~F~~~~~~aGvdGlIipD-----LP~e  136 (267)
T PRK13133         96 TVPIL--------LMGYC------------------NP-----LIAY---GGDCFLADAVKAGVDGLLIPD-----LPPE  136 (267)
T ss_pred             CCCEE--------EHHHH------------------HH-----HHHH---CHHHHHHHHHHCCCCEEECCC-----CCHH
T ss_conf             87787--------15645------------------79-----9984---779999999986987887789-----9968


Q ss_pred             HHHHH
Q ss_conf             67776
Q gi|254780812|r  217 EFENY  221 (346)
Q Consensus       217 ~f~~f  221 (346)
                      +..+|
T Consensus       137 E~~~~  141 (267)
T PRK13133        137 EAIDF  141 (267)
T ss_pred             HHHHH
T ss_conf             88999


No 57 
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=91.44  E-value=0.51  Score=28.07  Aligned_cols=53  Identities=19%  Similarity=0.202  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHC-CCCEEECCCCCC
Q ss_conf             99997777754981678438311006835677761272268999986308-862360243110
Q gi|254780812|r  188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKY-PNAKFISFAKGA  249 (346)
Q Consensus       188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~-~~vpiI~f~~g~  249 (346)
                      +.+.++...++|||.|.|-||. |.+.|++..        ++++.+++.. |++|+-.|+.++
T Consensus       145 l~~~a~~~~~~Gad~I~i~DT~-G~~~P~~v~--------~~v~~l~~~~~~~i~ig~H~HNn  198 (333)
T TIGR03217       145 LAEQAKLMESYGADCVYIVDSA-GAMLPDDVR--------DRVRALKAVLKPETQVGFHAHHN  198 (333)
T ss_pred             HHHHHHHHHHCCCCEEEECCCC-CCCCHHHHH--------HHHHHHHHHCCCCCEEEEEEECC
T ss_conf             9999999985699999975964-468999999--------99999998629975488986178


No 58 
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=91.14  E-value=0.62  Score=27.44  Aligned_cols=52  Identities=21%  Similarity=0.300  Sum_probs=36.9

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf             9997777754981678438311006835677761272268999986308862360243110
Q gi|254780812|r  189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA  249 (346)
Q Consensus       189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~  249 (346)
                      .++++.-+++|||-|.+-|| .|...|.++.        ++++.+++..|..++-.|+.+.
T Consensus       158 ~~~~~~~~~~Ga~~I~laDT-~G~a~P~~v~--------~~i~~v~~~~~~~~i~~H~Hnd  209 (287)
T PRK05692        158 ADVAERLFALGCDEISLGDT-IGVGTPGQVR--------RVLEAVLAEFPAERLAGHFHDT  209 (287)
T ss_pred             HHHHHHHHHCCCCEEECCCC-CCCCCHHHHH--------HHHHHHHHHCCCCCEEEEECCC
T ss_conf             99999998579978544765-5666999999--------9999999866887235674487


No 59 
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=91.03  E-value=1.3  Score=25.31  Aligned_cols=148  Identities=14%  Similarity=0.144  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHHHHHHCCCCCCCHHHH---------HH---HHCCCHHHHHHHHH
Q ss_conf             237877787642102453201111479-----99999996124677652467---------75---30137222899999
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIGFCGA-----PWTVASYMISGGFIKDHGQN---------RV---FAYQNSRAFNWLLD  182 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIGF~Gg-----P~TlasYmieG~~sk~~~~~---------~~---~~~~~p~~~~~ll~  182 (346)
                      +...++.++.+|++++ ++|+|+...+     =|+-..-++|.-|..-++-.         +.   .+-++|+.+.++.+
T Consensus        83 le~~L~~i~~~k~~~P-~~~vIaSI~g~~~~e~w~~la~~~e~~GaDalELNiSCPn~~~~~~~G~~~gq~pe~v~~i~~  161 (413)
T PRK08318         83 LEVNLREIRRVKRDYP-DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMVTR  161 (413)
T ss_pred             HHHHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHCCCHHHHHHHHH
T ss_conf             9999999999886078-970899994587889999999986651887799955567766666555110579999999999


Q ss_pred             HHHH---------------HHHHHHHHHHHCCCCEEEECCCCHHHCC--HH------------HHHHHHCCCHHHH----
Q ss_conf             9999---------------9999977777549816784383110068--35------------6777612722689----
Q gi|254780812|r  183 FLSD---------------VSAEYLIAQIHAGVDVIQIFDTHAGCLG--EH------------EFENYAARSVGRI----  229 (346)
Q Consensus       183 ~lt~---------------~~~~yl~~Qi~aGad~iqIFDs~ag~Ls--~~------------~f~~f~~p~~kkI----  229 (346)
                      .+.+               -+.+.+++-.++|||+|..+.|..++..  -+            .|--++-|.++-|    
T Consensus       162 ~Vk~~~~iPV~vKLsPnvtdi~~iA~aa~~aGADgv~liNTi~~~~~iDid~~~~~p~i~~~~~~GGlSG~aikPiALr~  241 (413)
T PRK08318        162 WVKRGSRLPVIAKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNM  241 (413)
T ss_pred             HHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf             98850688569982899752899999999769988999814786553202235530210677776766645676999999


Q ss_pred             HHHHHH--HCCCCEEECCCCCCC--CCHHHHHCCCCCCEEECCCC
Q ss_conf             999863--088623602431100--00134201478722304677
Q gi|254780812|r  230 ISAVRR--KYPNAKFISFAKGAG--YMLKNYRRLTDSNAIGLDWS  270 (346)
Q Consensus       230 ~~~ik~--~~~~vpiI~f~~g~~--~~l~~~~~~~g~d~isiD~~  270 (346)
                      +..+.+  +.+++|||.-. |..  ...-++.- .|++++-+-..
T Consensus       242 V~~i~~~~~~~~ipIiG~G-GI~s~~Da~e~il-aGAsaVQv~Ta  284 (413)
T PRK08318        242 VAEIARDPETRGLPISGIG-GIETWRDAAEFIL-LGAGTVQVCTA  284 (413)
T ss_pred             HHHHHHHCCCCCCCEEEEC-CCCCHHHHHHHHH-HCCCCEEEEEH
T ss_conf             9999863467883779756-8598999999998-27892167510


No 60 
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733   Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway .   TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=90.86  E-value=1.6  Score=24.61  Aligned_cols=111  Identities=17%  Similarity=0.216  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHCC----HHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCC
Q ss_conf             999977777549816784383110068----3567776127226899998630886236024311000013420147872
Q gi|254780812|r  188 SAEYLIAQIHAGVDVIQIFDTHAGCLG----EHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSN  263 (346)
Q Consensus       188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls----~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d  263 (346)
                      ....++.-+++|++++|+=|=...-+.    .+.+.+.+.    ++-+-.+++  ++|+|.     +- -.+++-..++|
T Consensus        17 ~~~~ve~Al~GGV~~~QlR~K~~~~~~~yGE~~~~~~~A~----~l~~lc~~y--~~~f~v-----ND-~vdlA~~~~AD   84 (210)
T TIGR00693        17 LLARVEAALKGGVTLVQLRDKGSNALQQYGETRERLELAE----KLRELCRKY--GVPFIV-----ND-RVDLALALGAD   84 (210)
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHH----HHHHHHHHC--CCCEEE-----CC-HHHHHHHHCCC
T ss_conf             8999999985896299984058754212585889999999----999999870--897688-----28-39999983798


Q ss_pred             EEECCCCC-CHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCC-CE
Q ss_conf             23046779-989999707984696888846770998899999999999732599-28
Q gi|254780812|r  264 AIGLDWSV-PLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGP-FI  318 (346)
Q Consensus       264 ~isiD~~~-dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~-~I  318 (346)
                      +++|...- ++.+||++.++-.+.|==     ..+.+++.+... | +. ..+. ||
T Consensus        85 GvHlGQ~D~p~~~aR~l~G~~~iiG~S-----~~~~~e~~~a~~-C-~~-~~gaDY~  133 (210)
T TIGR00693        85 GVHLGQDDLPVSEARKLLGPDKIIGVS-----THNLEELAEAAA-C-EL-KEGADYI  133 (210)
T ss_pred             EEEECCCCCCHHHHHHHCCCCCEEEEE-----ECCHHHHHHHHH-H-HH-HCCCCEE
T ss_conf             776678889989999853899579853-----379899999998-7-64-0789888


No 61 
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=90.81  E-value=0.91  Score=26.28  Aligned_cols=18  Identities=28%  Similarity=0.536  Sum_probs=11.7

Q ss_pred             HHHHHHHHCCCCCCHHHHHH
Q ss_conf             77876421024532011114
Q gi|254780812|r  125 QSISILRKKLPNHITLIGFC  144 (346)
Q Consensus       125 eAi~~~k~~l~~~~pLIGF~  144 (346)
                      -|+..+|+++  ++|++|-+
T Consensus        81 ~al~~LR~~~--~iPVvGvi   98 (269)
T COG0796          81 VALEDLREKF--DIPVVGVI   98 (269)
T ss_pred             HHHHHHHHHC--CCCEEEEC
T ss_conf             9999999867--99989953


No 62 
>PRK13121 consensus
Probab=90.24  E-value=1.8  Score=24.25  Aligned_cols=63  Identities=19%  Similarity=0.281  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA  198 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a  198 (346)
                      .+..+++.++.+|++ ..++|++=        ++|.                  ||     ++..-   .-+|++...++
T Consensus        77 ~~~~~~~~~~~~r~~-~~~~Pivl--------M~Y~------------------N~-----i~~yG---~e~F~~~~~~a  121 (265)
T PRK13121         77 SLRQVLAMVKEFRET-NQTTPVVL--------MGYA------------------NP-----IERMG---YDAFAAAARAA  121 (265)
T ss_pred             CHHHHHHHHHHHHCC-CCCCCEEE--------EEHH------------------HH-----HHHHH---HHHHHHHHHHC
T ss_conf             846779999983103-79999898--------6214------------------59-----99971---99999999872


Q ss_pred             CCCEEEECCCCHHHCCHHHHHHH
Q ss_conf             98167843831100683567776
Q gi|254780812|r  199 GVDVIQIFDTHAGCLGEHEFENY  221 (346)
Q Consensus       199 Gad~iqIFDs~ag~Ls~~~f~~f  221 (346)
                      |+|.+-|-|     |++++-.+|
T Consensus       122 GvdGlIipD-----LP~eE~~~~  139 (265)
T PRK13121        122 GVDGVLVVD-----YPPEECEEF  139 (265)
T ss_pred             CCCEEECCC-----CCHHHHHHH
T ss_conf             987343489-----998999999


No 63 
>PRK13120 consensus
Probab=90.00  E-value=1.9  Score=24.12  Aligned_cols=109  Identities=18%  Similarity=0.306  Sum_probs=55.1

Q ss_pred             CHHHHHHH-HHHHHHHCCCCEE---EECCCCEECCHHHCCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             79999998-7212876298726---5213320010432443373168875222333335542056701234432378777
Q gi|254780812|r   51 TPEYTVEL-TLQPIRRYNFDAA---ILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQS  126 (346)
Q Consensus        51 ~pela~ev-tl~p~~r~~~Daa---IlFsDIl~~~ealG~~v~f~~~~GP~~~p~~~~~~~~~~~~~~~~~~~l~~v~eA  126 (346)
                      +|++.+-. .+..+.+-|.|..   |-|||              +--.||++........     ...   -.+..+++-
T Consensus        31 ~P~~~~t~~~l~~l~~~GaDiiElGiPFSD--------------PvADGPvIQ~A~~rAL-----~~G---~~l~~vl~~   88 (285)
T PRK13120         31 DPSPQATVPLMHALVRAGADLVELGVPFSD--------------PMADGPVVQRAAERAI-----AQG---VGLRRVLEL   88 (285)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCC--------------CCCCCHHHHHHHHHHH-----HCC---CCHHHHHHH
T ss_conf             899899999999999769999997898787--------------4566899999999999-----769---984469999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             87642102453201111479999999961246776524677530137222899999999999999777775498167843
Q gi|254780812|r  127 ISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF  206 (346)
Q Consensus       127 i~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF  206 (346)
                      ++.+|++. .++|++        |++|.                  ||     ++..   -.-+|++.--++|+|.+-|-
T Consensus        89 v~~~r~~~-~~~Piv--------lM~Y~------------------Np-----i~~y---G~e~F~~~~~~aGvdGlIIp  133 (285)
T PRK13120         89 VADFRRDD-SVTPVV--------LMGYA------------------NP-----IERM---GQRAFAQAAQAAGVDGVLVV  133 (285)
T ss_pred             HHHHHHCC-CCCCEE--------EEEHH------------------HH-----HHHH---HHHHHHHHHHHCCCCEEECC
T ss_conf             99987348-988889--------86105------------------49-----9998---79999999998398779647


Q ss_pred             CCCHHHCCHHHHHHH
Q ss_conf             831100683567776
Q gi|254780812|r  207 DTHAGCLGEHEFENY  221 (346)
Q Consensus       207 Ds~ag~Ls~~~f~~f  221 (346)
                      |     |++++-.+|
T Consensus       134 D-----LP~EE~~~~  143 (285)
T PRK13120        134 D-----YPPEEVDEF  143 (285)
T ss_pred             C-----CCHHHHHHH
T ss_conf             9-----997999999


No 64 
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930    In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys.    Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis.  ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate  Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=89.91  E-value=0.95  Score=26.15  Aligned_cols=118  Identities=22%  Similarity=0.287  Sum_probs=57.2

Q ss_pred             CCCEEEECCCCEECCHHHCCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             98726521332001043244337316887522233333554205670123443237877787642102453201111479
Q gi|254780812|r   67 NFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGA  146 (346)
Q Consensus        67 ~~DaaIlFsDIl~~~ealG~~v~f~~~~GP~~~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~Gg  146 (346)
                      |+|-=.+| |-|==++.|-+.++=..+.|=+.|-..+-.-+.+++.... .+ |.|+.+-    -+||-.       +| 
T Consensus       658 GiD~FRvF-DsLN~l~~l~l~~dAv~~~gkv~EAAicYtGDil~~~r~K-Yd-L~YYt~l----A~eL~~-------aG-  722 (1169)
T TIGR01235       658 GIDIFRVF-DSLNWLENLKLGMDAVKEAGKVVEAAICYTGDILDPARKK-YD-LKYYTNL----AEELVK-------AG-  722 (1169)
T ss_pred             CCEEEECC-CCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCC-CC-HHHHHHH----HHHHHH-------CC-
T ss_conf             83078700-1113321020163677750997999975200326888974-37-7889999----999997-------09-


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH----------------HHHHHHHHHHHCCCCEEEEC-CCC
Q ss_conf             9999999612467765246775301372228999999999----------------99999777775498167843-831
Q gi|254780812|r  147 PWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSD----------------VSAEYLIAQIHAGVDVIQIF-DTH  209 (346)
Q Consensus       147 P~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~----------------~~~~yl~~Qi~aGad~iqIF-Ds~  209 (346)
                           ++++   +.||..=.+     +|+.+..|+.-|-+                .-+.-..+.++||||+|-+. ||.
T Consensus       723 -----aHIL---~iKDMAGlL-----KP~AAk~L~~ALre~~PD~PiH~HTHDtSG~ava~~~aaveAGvDvvDvAv~sm  789 (1169)
T TIGR01235       723 -----AHIL---GIKDMAGLL-----KPAAAKLLIKALREKIPDLPIHLHTHDTSGAAVASMLAAVEAGVDVVDVAVDSM  789 (1169)
T ss_pred             -----CCEE---EEHHHHCCC-----HHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_conf             -----8034---301011244-----289999999999732799856862666126899999999875886114567641


Q ss_pred             HHH
Q ss_conf             100
Q gi|254780812|r  210 AGC  212 (346)
Q Consensus       210 ag~  212 (346)
                      +|+
T Consensus       790 SG~  792 (1169)
T TIGR01235       790 SGL  792 (1169)
T ss_pred             CCC
T ss_conf             045


No 65 
>PRK13118 consensus
Probab=89.84  E-value=1.9  Score=24.03  Aligned_cols=54  Identities=19%  Similarity=0.255  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA  198 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a  198 (346)
                      .+..+++.++.+|++. .++|++-        ++|                  -||     ++..   -.-+|++...++
T Consensus        77 ~~~~~~~~v~~~r~~~-~~~Pivl--------M~Y------------------~N~-----i~~~---G~e~F~~~~~~~  121 (269)
T PRK13118         77 GLADVLQMVREFRQGD-QTTPVVL--------MGY------------------LNP-----IEIY---GYERFVAQAKEA  121 (269)
T ss_pred             CHHHHHHHHHHHHHCC-CCCCEEE--------EEE------------------CCH-----HHHH---HHHHHHHHHHHC
T ss_conf             6889999999986438-9999899--------740------------------007-----8786---399999999985


Q ss_pred             CCCEEEECC
Q ss_conf             981678438
Q gi|254780812|r  199 GVDVIQIFD  207 (346)
Q Consensus       199 Gad~iqIFD  207 (346)
                      |+|.+-|-|
T Consensus       122 GvdGvIipD  130 (269)
T PRK13118        122 GVDGLILVD  130 (269)
T ss_pred             CCCEEECCC
T ss_conf             997464589


No 66 
>PRK00915 2-isopropylmalate synthase; Validated
Probab=89.73  E-value=0.99  Score=26.04  Aligned_cols=54  Identities=28%  Similarity=0.332  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC---CCEEECCCCC
Q ss_conf             99999977777549816784383110068356777612722689999863088---6236024311
Q gi|254780812|r  186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP---NAKFISFAKG  248 (346)
Q Consensus       186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~---~vpiI~f~~g  248 (346)
                      ++..+.+++-+++|||.|.+-||.+. ..|..+.++        ++.+++..|   ++|+-.||.+
T Consensus       149 ~~l~~~~~aa~~aGa~~i~l~DTvG~-~~P~~~~~~--------i~~l~~~~p~~~~v~i~vH~HN  205 (511)
T PRK00915        149 DFLCRVVEAAIDAGATTINIPDTVGY-TTPEEFGEL--------IKTLRERVPNIDKAIISVHCHN  205 (511)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCC-CCHHHHHHH--------HHHHHHHCCCCCCCEEEEEECC
T ss_conf             99999999987649999864566677-693899999--------9999986488656248998418


No 67 
>PRK13112 consensus
Probab=89.51  E-value=2  Score=23.87  Aligned_cols=63  Identities=19%  Similarity=0.244  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA  198 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a  198 (346)
                      .+..+++-++.+|++. .++|++        |++|.                  ||     ++..   -.-+|++...++
T Consensus        78 ~~~~~~~~~~~ir~~~-~~~Piv--------lM~Y~------------------N~-----i~~~---G~e~F~~~~~~a  122 (279)
T PRK13112         78 TLAKTLYLAREFRKDD-DTTPIV--------LMGYY------------------NP-----IYIY---GVERFLTDAKAA  122 (279)
T ss_pred             CHHHHHHHHHHHHCCC-CCCCEE--------EEEEC------------------HH-----HHHH---CHHHHHHHHHHC
T ss_conf             6889999999851348-998879--------98512------------------49-----9884---799999999973


Q ss_pred             CCCEEEECCCCHHHCCHHHHHHH
Q ss_conf             98167843831100683567776
Q gi|254780812|r  199 GVDVIQIFDTHAGCLGEHEFENY  221 (346)
Q Consensus       199 Gad~iqIFDs~ag~Ls~~~f~~f  221 (346)
                      |+|.+-|-|     |++++-.+|
T Consensus       123 GvdGvIipD-----LP~eE~~~~  140 (279)
T PRK13112        123 GVDGLIVVD-----LPPEMDAEL  140 (279)
T ss_pred             CCCEEEECC-----CCHHHHHHH
T ss_conf             998798469-----997888999


No 68 
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.49  E-value=2  Score=23.86  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             32378777876421024532011
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLI  141 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLI  141 (346)
                      .+..+++.++.+|++.  ++|++
T Consensus        60 ~~~~~~~~~~~~r~~~--~~piv   80 (242)
T cd04724          60 TLKDVLELVKEIRKKN--TIPIV   80 (242)
T ss_pred             CHHHHHHHHHHHHHCC--CCCEE
T ss_conf             4999999999987347--98889


No 69 
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal; InterPro: IPR012714    Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacteria), a toroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=89.29  E-value=2.1  Score=23.76  Aligned_cols=123  Identities=15%  Similarity=0.213  Sum_probs=81.0

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             30137222899999999999999777775498167843831100683567776127226899998630886236024311
Q gi|254780812|r  169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG  248 (346)
Q Consensus       169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g  248 (346)
                      .-.++|+....+|+.=...+.+|...-+++|||+|         +..+--++.+.-|+.       ++  |   |+=.|.
T Consensus       252 i~I~~P~Qi~~FldqEe~~Lke~VD~i~~~GAnVV---------fCQKGIDD~Aq~yLa-------k~--G---IlAvRR  310 (522)
T TIGR02339       252 ISITSPDQIKKFLDQEEAMLKEMVDKIADAGANVV---------FCQKGIDDLAQHYLA-------KA--G---ILAVRR  310 (522)
T ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE---------EECCCHHHHHHHHHH-------HC--C---EEEECC
T ss_conf             33078899999999999999999889998289879---------822886899999871-------05--6---022043


Q ss_pred             -CCCCHHHHHCCCCCCEEE-CCCCC--CHHHH-----HHHCCC--EEEECCCCHH---HH-CCCHHHHHHHHHHHHHHH
Q ss_conf             -000013420147872230-46779--98999-----970798--4696888846---77-099889999999999973
Q gi|254780812|r  249 -AGYMLKNYRRLTDSNAIG-LDWSV--PLSFA-----LELQKE--GPVQGNLDPM---RL-VVGNQVMIDGVNAILDVL  312 (346)
Q Consensus       249 -~~~~l~~~~~~~g~d~is-iD~~~--dl~~a-----~~~~~~--~~lqGNldP~---~L-~~~~e~i~~~~~~~l~~~  312 (346)
                       ...-++.+.+.||+..+| ++.-.  ||..|     ++.+++  ..++|-=||.   +| .|+.|.|-.|+.+-|+.+
T Consensus       311 VKkSDi~~LarATGA~i~s~i~e~~~~DLG~A~lVE~r~vG~~~m~Fveg~knpKAVtiLlRGgtehVVDE~ERsl~DA  389 (522)
T TIGR02339       311 VKKSDIEKLARATGAKIVSSIKEITESDLGYAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERSLQDA  389 (522)
T ss_pred             CCHHHHHHHHHHCCCCEECCHHHCCHHHCCCEEEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCEEHHHHHHHHHHH
T ss_conf             3533799998731884125731169636761422686542686238884079983578999658750102134668889


No 70 
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=89.00  E-value=0.94  Score=26.20  Aligned_cols=67  Identities=25%  Similarity=0.267  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEE
Q ss_conf             9999977777549816784383110068356777612722689999863088623602431100001342014787223
Q gi|254780812|r  187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAI  265 (346)
Q Consensus       187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~i  265 (346)
                      ...+-+.+.++||||+|. .|+.-|. |         .+..+.++.+|+.+|++|+|.=..-+...-.++.+ .|+|++
T Consensus       238 ~~~eRa~~Lv~aGvDvlv-IDtAhGh-s---------~~v~~~ik~ik~~~p~v~vIaGNVaT~~~a~~Li~-aGAD~v  304 (499)
T PTZ00314        238 EDKERAAALIDAGVDVLV-LDSSQGN-S---------IYQIDFIKWIKSTYPHLEVIAGNVVTQDQAKNLID-AGADGI  304 (499)
T ss_pred             CHHHHHHHHHHCCCCEEE-EECCCCC-C---------HHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHH-CCCCEE
T ss_conf             489999999986998999-8168877-2---------78999999988527988467643310999999997-499879


No 71 
>PRK13113 consensus
Probab=88.96  E-value=2.2  Score=23.60  Aligned_cols=63  Identities=19%  Similarity=0.291  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA  198 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a  198 (346)
                      .+..+++-++.+|++- .++|++        +++|.                  ||     ++..   -.-+|++...++
T Consensus        77 ~~~~~~~~v~~~r~~~-~~~Piv--------lM~Y~------------------N~-----i~~~---G~e~F~~~~~~~  121 (263)
T PRK13113         77 TLDRTLDMVRAFRKED-DTTPIV--------MMGYY------------------NP-----IYSR---GVDRFLAEAKEA  121 (263)
T ss_pred             CHHHHHHHHHHHHCCC-CCCCEE--------EEECH------------------HH-----HHHH---HHHHHHHHHHHC
T ss_conf             3889999999751238-998889--------98313------------------68-----9885---699999998777


Q ss_pred             CCCEEEECCCCHHHCCHHHHHHH
Q ss_conf             98167843831100683567776
Q gi|254780812|r  199 GVDVIQIFDTHAGCLGEHEFENY  221 (346)
Q Consensus       199 Gad~iqIFDs~ag~Ls~~~f~~f  221 (346)
                      |+|.+-|-|     |++++-.+|
T Consensus       122 GvdGvIipD-----LP~eE~~~~  139 (263)
T PRK13113        122 GIDGLIVVD-----LPPEEDSEL  139 (263)
T ss_pred             CCCEEEECC-----CCHHHHHHH
T ss_conf             943697179-----997888999


No 72 
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=88.75  E-value=1.1  Score=25.78  Aligned_cols=67  Identities=27%  Similarity=0.367  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf             9999777775498167843831100683567776127226899998630886236024311000013420147872230
Q gi|254780812|r  188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIG  266 (346)
Q Consensus       188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~is  266 (346)
                      ..+-+.+.+++|+|+| +.|+.-|. |.         +..+.++.+|+.+|++++|.=.-.+...-.++.+ .|+|++=
T Consensus       224 ~~eRa~~Lv~aGvDvi-vIDtAhGh-s~---------~vi~~ik~ik~~~p~~~iIaGNVaT~e~a~~Li~-aGAD~vK  290 (467)
T pfam00478       224 DLERAEALVEAGVDVI-VIDSAHGH-SE---------YVLEMIKWIKKKYPDLDVIAGNVVTAEAARELID-AGADAVK  290 (467)
T ss_pred             HHHHHHHHHHCCCCEE-EEECCCCC-CH---------HHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHH-HCCCEEE
T ss_conf             9999999987699889-97344544-18---------8999999987407877378510058999999997-0777577


No 73 
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=88.64  E-value=0.96  Score=26.13  Aligned_cols=70  Identities=24%  Similarity=0.339  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEE
Q ss_conf             99999977777549816784383110068356777612722689999863088623602431100001342014787223
Q gi|254780812|r  186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAI  265 (346)
Q Consensus       186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~i  265 (346)
                      +...+-+.+.++||||++ +.|+.-|. |.     +    .-+.++.+|+.+|++|+|.=..-+.....++.+ .|+|++
T Consensus       227 ~~~~eRa~~Lv~AGvDvi-vIDtAhGh-s~-----~----vi~~ik~ik~~~~~v~viaGNv~T~~~a~~L~~-aGaD~v  294 (486)
T PRK05567        227 ADNEERAEALVKAGVDVL-VVDTAHGH-SE-----G----VLDRVREIKAKYPDVQIIAGNVATAEAARALIE-AGADAV  294 (486)
T ss_pred             CCHHHHHHHHHHCCCCEE-EEECCCCC-HH-----H----HHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHH-CCCCEE
T ss_conf             018999999997699889-95044521-57-----7----899999997407877368751201999999997-298769


Q ss_pred             EC
Q ss_conf             04
Q gi|254780812|r  266 GL  267 (346)
Q Consensus       266 si  267 (346)
                      =+
T Consensus       295 kV  296 (486)
T PRK05567        295 KV  296 (486)
T ss_pred             EE
T ss_conf             96


No 74 
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990    Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase     IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP .  Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH     IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=88.02  E-value=1.7  Score=24.37  Aligned_cols=70  Identities=14%  Similarity=0.128  Sum_probs=31.2

Q ss_pred             HHHHHCCCCCCEEECCCCCC--------HHHHHHHCCCE-EEECCCCHHHHCCCHHHHHHHHHHHHHHHCC-------CC
Q ss_conf             13420147872230467799--------89999707984-6968888467709988999999999997325-------99
Q gi|254780812|r  253 LKNYRRLTDSNAIGLDWSVP--------LSFALELQKEG-PVQGNLDPMRLVVGNQVMIDGVNAILDVLGS-------GP  316 (346)
Q Consensus       253 l~~~~~~~g~d~isiD~~~d--------l~~a~~~~~~~-~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~-------~~  316 (346)
                      ...+.+ .|+|+|=||...-        ++|.|+..+++ +|-||+=.          .+.++.+++++.+       .|
T Consensus       244 ~~~L~~-AGvDv~viDsshGhs~~vl~~ik~~k~~Yp~~~iiaGNVaT----------~~~a~~LI~AgADg~rVGiGpG  312 (476)
T TIGR01302       244 AEALVE-AGVDVIVIDSSHGHSIYVLDSIKKIKKTYPDLDIIAGNVAT----------AEQAKALIDAGADGLRVGIGPG  312 (476)
T ss_pred             HHHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCC----------HHHHHHHHHCCCCEEEECCCCC
T ss_conf             999996-59658998166545378999999998638805799434411----------7889889852888789836889


Q ss_pred             CEEEE----CCCCCCCCCHHH
Q ss_conf             28960----897633668899
Q gi|254780812|r  317 FIFNL----GHGITPQVDPKN  333 (346)
Q Consensus       317 ~I~nL----GhGi~p~tp~eN  333 (346)
                      =||-+    |||+|.-|=+-.
T Consensus       313 SICTTr~V~gVGvPQ~TAv~~  333 (476)
T TIGR01302       313 SICTTRIVAGVGVPQITAVYD  333 (476)
T ss_pred             CCCEEEEEEECCCHHHHHHHH
T ss_conf             811001565127626889999


No 75 
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=87.86  E-value=1.4  Score=25.07  Aligned_cols=48  Identities=33%  Similarity=0.431  Sum_probs=27.1

Q ss_pred             HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             777775498167843831100683567776127226899998630886236024311
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG  248 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g  248 (346)
                      +++-+++||+.|.+.||. |...|..+.+        ++..+++..+++++-.||.+
T Consensus       164 ~~aa~~aGa~~i~l~DTv-G~~~P~~v~~--------~i~~l~~~~~~~~isvH~HN  211 (530)
T PRK12344        164 LKAAAEAGADWVVLCDTN-GGTLPHEVAA--------IVAEVRARLPGAPLGIHAHN  211 (530)
T ss_pred             HHHHHHCCCCEEEECCCC-CCCCHHHHHH--------HHHHHHHHCCCCEEEEEECC
T ss_conf             999985299600237886-5558899999--------99999974899827998459


No 76 
>KOG3253 consensus
Probab=87.67  E-value=1.9  Score=24.04  Aligned_cols=195  Identities=15%  Similarity=0.193  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC---CHHH-HHHHHHHH--------
Q ss_conf             44323787778764210245320111147999999996124677652467753013---7222-89999999--------
Q gi|254780812|r  117 LNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQ---NSRA-FNWLLDFL--------  184 (346)
Q Consensus       117 ~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~---~p~~-~~~ll~~l--------  184 (346)
                      ...+..+++++..+|-+++             ||+-||+.|+...+-..++..+.+   +|.. .+...+.+        
T Consensus       115 pp~~a~yl~ilqtLkgkiP-------------tL~d~ml~g~~~~~~~E~ms~ilkK~kep~Vn~~~kps~v~~spl~i~  181 (784)
T KOG3253         115 PPAPAPYLVILQTLKGKIP-------------TLADYMLDGNLNEGVNETMSTILKKRKEPGVNEDIKPSVVPASPLAIK  181 (784)
T ss_pred             CCCCHHHHHHHHHHHCCCC-------------HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             7632029999987532475-------------087887506713106888899876430567776667240357731796


Q ss_pred             -------HHHHHHH--HHHHHHCCCCEEEE--CCC--CHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf             -------9999999--77777549816784--383--1100683567776127226899998630886236024311000
Q gi|254780812|r  185 -------SDVSAEY--LIAQIHAGVDVIQI--FDT--HAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGY  251 (346)
Q Consensus       185 -------t~~~~~y--l~~Qi~aGad~iqI--FDs--~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~  251 (346)
                             ....-.|  ...+..---+++++  ||-  -+|-.+-.+-.|+..-+.+-++.++..++|..|||+..+..+.
T Consensus       182 aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG~nI~h~ae~~vSf~r~kvlei~gefpha~IiLvGrsmGA  261 (784)
T KOG3253         182 APSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGGANIKHAAEYSVSFDRYKVLEITGEFPHAPIILVGRSMGA  261 (784)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf             26888787663577769998754200210002455677777234888888777765433322033789855887424473


Q ss_pred             CHHHHHCCCCCCEEECCCCCCHHHHH---------------HH-CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             01342014787223046779989999---------------70-798469688884677099889999999999973259
Q gi|254780812|r  252 MLKNYRRLTDSNAIGLDWSVPLSFAL---------------EL-QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSG  315 (346)
Q Consensus       252 ~l~~~~~~~g~d~isiD~~~dl~~a~---------------~~-~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~  315 (346)
                      .+-......+.|+. |+-.+++.+..               ++ .+-.+++|-=|+   ..+++.+++-..++-..-. -
T Consensus       262 lVachVSpsnsdv~-V~~vVCigypl~~vdgprgirDE~Lldmk~PVLFV~Gsnd~---mcspn~ME~vreKMqA~~e-l  336 (784)
T KOG3253         262 LVACHVSPSNSDVE-VDAVVCIGYPLDTVDGPRGIRDEALLDMKQPVLFVIGSNDH---MCSPNSMEEVREKMQAEVE-L  336 (784)
T ss_pred             EEEEEECCCCCCCE-EEEEEEECCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCC---CCCHHHHHHHHHHHHCCCE-E
T ss_conf             01687512567734-78999715635677766688625667417966998368756---6798899999998625516-9


Q ss_pred             CCEEEECCCCCCCC
Q ss_conf             92896089763366
Q gi|254780812|r  316 PFIFNLGHGITPQV  329 (346)
Q Consensus       316 ~~I~nLGhGi~p~t  329 (346)
                      -+|=..+|-+-+.+
T Consensus       337 hVI~~adhsmaipk  350 (784)
T KOG3253         337 HVIGGADHSMAIPK  350 (784)
T ss_pred             EEECCCCCCCCCCC
T ss_conf             99657774424776


No 77 
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=87.50  E-value=1.3  Score=25.21  Aligned_cols=66  Identities=18%  Similarity=0.295  Sum_probs=38.6

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf             999777775498167843831100683567776127226899998630886236024311000013420147872230
Q gi|254780812|r  189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIG  266 (346)
Q Consensus       189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~is  266 (346)
                      .+-+.+.+++|||+|.| |+..|.      .+    +..+.++.+|+.+|++|+|.=...+...-.++.+ +|+|++=
T Consensus       155 ~era~~Lv~AGvD~lvI-D~AhGh------s~----~~~e~ik~ik~~~p~v~VIaGNVaT~~~a~~Li~-aGAD~Vk  220 (404)
T PRK06843        155 IERVEELVKAHVDILVI-DSAHGH------ST----RIIELVKTIKNKYPNLDLIAGNIVTKEAALDLIN-VGADCLK  220 (404)
T ss_pred             HHHHHHHHHCCCCEEEE-ECCCCC------HH----HHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHH-HCCCEEE
T ss_conf             99999999769999999-688752------17----8999999999767996166303057999999998-1989999


No 78 
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=87.07  E-value=1.1  Score=25.65  Aligned_cols=61  Identities=18%  Similarity=0.346  Sum_probs=42.7

Q ss_pred             HHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC-CCHHHHHCCCCCCEEECCCC
Q ss_conf             77549816784383110068356777612722689999863088623602431100-00134201478722304677
Q gi|254780812|r  195 QIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG-YMLKNYRRLTDSNAIGLDWS  270 (346)
Q Consensus       195 Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~-~~l~~~~~~~g~d~isiD~~  270 (346)
                      -+++|+|.||+ |-    .+|++        +++.++.+++..+.+ .+-.++|.+ ..+.+|.. +|+|.||+..-
T Consensus        96 a~~~~~d~I~L-Dn----~spe~--------l~~~v~~l~~~~~~v-~iEaSGgI~~~ni~~yA~-tGvD~IS~gal  157 (169)
T pfam01729        96 ALEAGADIIML-DN----FSPEE--------VREAVEELDERAGRV-LLEVSGGITLDNVLEYAK-TGVDVISVGAL  157 (169)
T ss_pred             HHHCCCCEEEE-CC----CCHHH--------HHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHH-CCCCEEECCHH
T ss_conf             98469989997-79----99999--------999999999758967-999618999999999997-69999985864


No 79 
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.07  E-value=0.83  Score=26.58  Aligned_cols=64  Identities=17%  Similarity=0.320  Sum_probs=31.6

Q ss_pred             HHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC-CCHHHHHCCCCCCEEECCC
Q ss_conf             977777549816784383110068356777612722689999863088623602431100-0013420147872230467
Q gi|254780812|r  191 YLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG-YMLKNYRRLTDSNAIGLDW  269 (346)
Q Consensus       191 yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~-~~l~~~~~~~g~d~isiD~  269 (346)
                      -+..-+++|||+||+ |-    .+|++.        ++.++.+++.+|++ .|-.++|.+ ..+.+|.+ +|+|.||+.+
T Consensus       193 ea~~a~~~gaDiI~L-Dn----~~~e~~--------k~~v~~~~~~~~~v-~ieaSGGI~~~ni~~yA~-~GvD~Is~g~  257 (272)
T PRK05848        193 EAKEAMNAGADIVMC-DN----MSVEET--------KEIVAYRNANYPHV-LLEASGNISLETINAYAK-SGVDAISSGS  257 (272)
T ss_pred             HHHHHHHCCCCEEEE-CC----CCHHHH--------HHHHHHHHCCCCCE-EEEEECCCCHHHHHHHHH-CCCCEEECCH
T ss_conf             999998459998995-89----999999--------99999874648877-999979998999999996-5999998797


No 80 
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.03  E-value=0.94  Score=26.19  Aligned_cols=11  Identities=27%  Similarity=0.151  Sum_probs=5.5

Q ss_pred             CCCCEEECCCC
Q ss_conf             78722304677
Q gi|254780812|r  260 TDSNAIGLDWS  270 (346)
Q Consensus       260 ~g~d~isiD~~  270 (346)
                      .|+|.+=+|+-
T Consensus       212 ~g~DiI~LDnm  222 (285)
T PRK07428        212 YGADIIMLDNM  222 (285)
T ss_pred             CCCCEEEECCC
T ss_conf             69999998799


No 81 
>TIGR00973 leuA_bact 2-isopropylmalate synthase; InterPro: IPR005671   The branched-chain amino acids are synthesised by a common pathway that leads from pyruvate and alpha-ketobutyrate to valine and isoleucine, and a branch that leads from the immediate precursor of valine, alpha-ketoisovalerate, to leucine . This pathway operates in archaea, bacteria, fungi and plants, but not mammals, making the enzymes suitable targets for the development of novel antibiotics and herbicides.   Isopropylmalate synthase is the enzyme responsible for the the first committed step in the leucine branch of this biosynthetic pathway, the conversion of alpha-ketoisovalerate to alpha-isopropylmalate. It is either dimeric or tetrameric, depending on the organism, with a monomer molecular mass of 60-70 kDa, a dependence on divalent metal ions for activity, and an alkaline pH optimum , , , . Like many other biosynthetic enzymes it is subject to feedback inhibition by the end product of the pathway, leucine.    This entry represents the isopropylmalate synthase most commonly found in bacteria. A related form of this enzyme is found mainly in eukaryotes and some other bacteria (IPR005668 from INTERPRO). A homologous family in archaea may represent isozymes and/or related enzymes (IPR005675 from INTERPRO). ; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process.
Probab=86.83  E-value=1.8  Score=24.27  Aligned_cols=54  Identities=28%  Similarity=0.374  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCC---EEECCCCC
Q ss_conf             9999997777754981678438311006835677761272268999986308862---36024311
Q gi|254780812|r  186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNA---KFISFAKG  248 (346)
Q Consensus       186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~v---piI~f~~g  248 (346)
                      +++.+-+.+-|+|||-+|.|-|| .|..-|..|-        .|++.+++.-||+   -+..||.+
T Consensus       151 ~fL~~~~E~AI~AGATtINiPDT-VGY~~P~EyG--------~lI~~~~e~VPNIdka~lSVHcHd  207 (514)
T TIGR00973       151 EFLARVVEAAINAGATTINIPDT-VGYALPAEYG--------NLIKGLRENVPNIDKAILSVHCHD  207 (514)
T ss_pred             HHHHHHHHHHHHCCCEEEECCCC-HHCCCHHHHH--------HHHHHHHCCCCCCCEEEEEEECCC
T ss_conf             89999999998279828726864-0003447899--------999998517888461178761447


No 82 
>PRK00865 glutamate racemase; Provisional
Probab=86.75  E-value=2.8  Score=22.85  Aligned_cols=110  Identities=10%  Similarity=0.093  Sum_probs=43.6

Q ss_pred             HHCCCCEEEECCC-CHHHCCHHHH-HHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCC--CHHH-HHCCCCCCEEECCCC
Q ss_conf             7549816784383-1100683567-776127226899998630886236024311000--0134-201478722304677
Q gi|254780812|r  196 IHAGVDVIQIFDT-HAGCLGEHEF-ENYAARSVGRIISAVRRKYPNAKFISFAKGAGY--MLKN-YRRLTDSNAIGLDWS  270 (346)
Q Consensus       196 i~aGad~iqIFDs-~ag~Ls~~~f-~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~--~l~~-~~~~~g~d~isiD~~  270 (346)
                      +..++.+.++--+ ++.++....+ .+-+...+++.++.+++...++ +|.   |++|  .+.+ +.+..+.++-=+|..
T Consensus       131 ~~~~~~V~~~~cp~Lv~liE~g~~~~~~~~~~l~~~L~~~~~~~iDt-lIL---GCTHYP~l~~~i~~~~~~~v~iIDpa  206 (262)
T PRK00865        131 FAPDCEVESLACPELVPLVEEGILGGPVLLEVLREYLAPLLAAGIDT-LVL---GCTHYPLLKPEIQQVLGEGVTLIDSG  206 (262)
T ss_pred             HCCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCE-EEE---CCCCHHHHHHHHHHHCCCCCEEECCH
T ss_conf             68998999658715999998356787999999999987764069988-997---67670778999999759998997288


Q ss_pred             CCHHHH-HHH-CCCEEE-ECCCCHH-HHC--CCHHHHHHHHHHHH
Q ss_conf             998999-970-798469-6888846-770--99889999999999
Q gi|254780812|r  271 VPLSFA-LEL-QKEGPV-QGNLDPM-RLV--VGNQVMIDGVNAIL  309 (346)
Q Consensus       271 ~dl~~a-~~~-~~~~~l-qGNldP~-~L~--~~~e~i~~~~~~~l  309 (346)
                      ...... ++. ..+.-+ .++-.+. .++  ++++.+++..++.|
T Consensus       207 ~~vA~~v~~~L~~~~l~~~~~~~~~~~f~tT~~~~~f~~~a~~fl  251 (262)
T PRK00865        207 EAIARRVARLLEESGLLNPPDAPPAHRFTTTGDPEAFKRLAQRWL  251 (262)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHC
T ss_conf             999999999998768666789998769997999999999999976


No 83 
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=86.72  E-value=3  Score=22.69  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9999999999977777549816784
Q gi|254780812|r  181 LDFLSDVSAEYLIAQIHAGVDVIQI  205 (346)
Q Consensus       181 l~~lt~~~~~yl~~Qi~aGad~iqI  205 (346)
                      .+---+.+.+.++.|+++||+++-|
T Consensus       380 ~~~d~~~~l~~A~~Qv~~GA~vLDV  404 (1229)
T PRK09490        380 KEEDYDEALDVARQQVENGAQIIDI  404 (1229)
T ss_pred             HCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             8439899999999999758978874


No 84 
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946   This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=86.38  E-value=1.3  Score=25.21  Aligned_cols=55  Identities=16%  Similarity=0.254  Sum_probs=34.4

Q ss_pred             HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHC
Q ss_conf             7777754981678438311006835677761272268999986308862360243110000134201
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRR  258 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~  258 (346)
                      ++.--++|+|+++|-=|.  -++.++.        -+.++.+|+.+ ++|+|.||++.+ .+.+.++
T Consensus        19 Ak~~~~aGtD~ilvGGs~--Gi~e~~l--------d~~v~~ik~~~-~~p~iLFPG~~~-~Ls~~AD   73 (212)
T TIGR01769        19 AKNAKEAGTDAILVGGSL--GISEDKL--------DQVVKKIKEIT-NLPVILFPGSVN-LLSRKAD   73 (212)
T ss_pred             HHHHHHCCCCEEEECCCC--CCCHHHH--------HHHHHHHHHCC-CCCEEECCCCHH-HHHHHHH
T ss_conf             999985289889836633--7335478--------89999864015-786688278845-7888865


No 85 
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=86.36  E-value=3.1  Score=22.56  Aligned_cols=21  Identities=19%  Similarity=0.358  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             32378777876421024532011
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLI  141 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLI  141 (346)
                      .+..+++.++.+|++.  ++|++
T Consensus        69 ~~~~~f~~~~~~r~~~--~~piv   89 (256)
T PRK13111         69 TLADVLELLREIRAKP--TIPIV   89 (256)
T ss_pred             CHHHHHHHHHHHHCCC--CCCEE
T ss_conf             6999999999986068--99889


No 86 
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.34  E-value=3.1  Score=22.55  Aligned_cols=93  Identities=19%  Similarity=0.279  Sum_probs=45.5

Q ss_pred             HHHHHHCCCCEEEECCCCEECCHHHCCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             21287629872652133200104324433731688752223333355420567012344323787778764210245320
Q gi|254780812|r   60 LQPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHIT  139 (346)
Q Consensus        60 l~p~~r~~~DaaIlFsDIl~~~ealG~~v~f~~~~GP~~~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~p  139 (346)
                      +.-+.+-|.|..=           +|....=+--.||++.......   +  ...   -.+..+++.++.+|++.  ++|
T Consensus        35 ~~~l~~~GaDiiE-----------lGiPfSDP~ADGpvIq~A~~~A---L--~~G---~~~~~~~~~v~~~r~~~--~~P   93 (263)
T CHL00200         35 LKILDKKGADIIE-----------LGIPYSDPLADGPIIQEASNRA---L--KQG---INLNKILSILSEVNGEI--KAP   93 (263)
T ss_pred             HHHHHHCCCCEEE-----------ECCCCCCCCCCCHHHHHHHHHH---H--HCC---CCHHHHHHHHHHHHHCC--CCC
T ss_conf             9999976999999-----------7898888666589999999999---9--779---87778999999986067--998


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             11114799999999612467765246775301372228999999999999997777754981678438
Q gi|254780812|r  140 LIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFD  207 (346)
Q Consensus       140 LIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFD  207 (346)
                      ++        |++|.                  ||     ++..   -.-+|++...++|+|.+-|-|
T Consensus        94 iv--------lMtY~------------------N~-----i~~y---G~e~F~~~~~~~GvdGlIipD  127 (263)
T CHL00200         94 IV--------IFTYY------------------NP-----VLHY---GINKFIKKISQAGVKGLIIPD  127 (263)
T ss_pred             EE--------EEEEH------------------HH-----HHHC---CHHHHHHHHHHCCCCEEECCC
T ss_conf             89--------98620------------------68-----8873---889999999984998687479


No 87 
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=86.18  E-value=0.92  Score=26.24  Aligned_cols=66  Identities=23%  Similarity=0.244  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEE
Q ss_conf             999977777549816784383110068356777612722689999863088623602431100001342014787223
Q gi|254780812|r  188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAI  265 (346)
Q Consensus       188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~i  265 (346)
                      ..+-+.+.++||||+|. .||.-|      +.++++    +.++.+|+.+|++++|.=.-.+...-.++.+ .|+|++
T Consensus       228 ~~eR~~aLv~AGvDvlv-IDtAHG------hS~~vi----~~vk~iK~~~p~~~viaGNvaT~~~a~~Li~-aGad~i  293 (479)
T PRK07807        228 VAAKARALLEAGVDVLV-IDTAHG------HQEKML----EAIRAVRALDPGVPLVAGNVVTAEGTRDLVE-AGADIV  293 (479)
T ss_pred             HHHHHHHHHHCCCCEEE-EECCCC------CHHHHH----HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH-CCCCEE
T ss_conf             89999999976998999-754576------648999----9999998408988578743202999999997-399976


No 88 
>PRK13127 consensus
Probab=85.96  E-value=3.2  Score=22.43  Aligned_cols=21  Identities=19%  Similarity=0.335  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             32378777876421024532011
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLI  141 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLI  141 (346)
                      .+..+++.++.+|++  .++|++
T Consensus        71 ~~~~~~~~~~~~r~~--~~~piv   91 (262)
T PRK13127         71 KIDKYFELVKELRVD--SSVPLV   91 (262)
T ss_pred             CHHHHHHHHHHHHCC--CCCCEE
T ss_conf             799999999997456--998879


No 89 
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=85.95  E-value=1.2  Score=25.45  Aligned_cols=125  Identities=14%  Similarity=0.247  Sum_probs=64.7

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHHHHHHHHCC-----CHHHHHHHHHHHCCCCE
Q ss_conf             53013722289999999999999977777549816784-3831100683567776127-----22689999863088623
Q gi|254780812|r  168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEHEFENYAAR-----SVGRIISAVRRKYPNAK  241 (346)
Q Consensus       168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~~f~~f~~p-----~~kkI~~~ik~~~~~vp  241 (346)
                      .-+|.+|+.+.++.+              +.|+|++.+ |-+.-|.-     . +..+     -.-..+++++++.|++|
T Consensus       169 ~~~yTdPeeA~~Fv~--------------~TgvD~LAvaiGt~HG~Y-----K-~~~~P~~~~L~~~rL~eI~~~vp~~p  228 (347)
T PRK09196        169 DQLLTDPEEAADFVK--------------KTQVDALAIAIGTSHGAY-----K-FTRKPTGDVLAIDRIKEIHARIPNTH  228 (347)
T ss_pred             HHHCCCHHHHHHHHH--------------HHCCCCCHHHHCCCCCCC-----C-CCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             431689999999999--------------748770300110134666-----5-77899722036999999998456786


Q ss_pred             EECCCCCC--------------------CCCHHHHHCC--CCCCEEECCCCCCHHHH-----HHHCCCEEEECCCCHHHH
Q ss_conf             60243110--------------------0001342014--78722304677998999-----970798469688884677
Q gi|254780812|r  242 FISFAKGA--------------------GYMLKNYRRL--TDSNAIGLDWSVPLSFA-----LELQKEGPVQGNLDPMRL  294 (346)
Q Consensus       242 iI~f~~g~--------------------~~~l~~~~~~--~g~d~isiD~~~dl~~a-----~~~~~~~~lqGNldP~~L  294 (346)
                      +..|....                    +...+++.+.  .|+.=+++|.  |+.+|     ++....-  -+.+||..+
T Consensus       229 LVLHGgS~vp~~~~~~~~~~gg~~~~~~G~~~e~i~~ai~~Gv~KiNi~T--dl~~a~~~avr~~l~~n--p~~~Dpr~~  304 (347)
T PRK09196        229 LVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDT--DLRLASTGAIRRFLAEN--PSEFDPRKY  304 (347)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEECCH--HHHHHHHHHHHHHHHHC--CCCCCHHHH
T ss_conf             78778968867899999873676654469899999999980964663374--89999999999999868--786895999


Q ss_pred             C-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             0-998899999999999732599
Q gi|254780812|r  295 V-VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       295 ~-~~~e~i~~~~~~~l~~~~~~~  316 (346)
                      + ...+.+++-++..++.++..|
T Consensus       305 ~~~~~~a~~~~v~~ki~~fGSaG  327 (347)
T PRK09196        305 LKPAMEAMKKICKARYEAFGTAG  327 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999999859867


No 90 
>PRK12857 putative aldolase; Reviewed
Probab=85.70  E-value=1.3  Score=25.13  Aligned_cols=126  Identities=13%  Similarity=0.231  Sum_probs=69.6

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             30137222899999999999999777775498167843-83110068356777612722689999863088623602431
Q gi|254780812|r  169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK  247 (346)
Q Consensus       169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~  247 (346)
                      -+|.+|+.+.++.+              +.|+|++.+. -+.-|.-..      .-.-.-++++++++.. ++|+..|. 
T Consensus       152 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGn~HG~yk~------~p~L~~~~L~~I~~~~-~vPLVLHG-  209 (284)
T PRK12857        152 AFFTDPEEARRFVE--------------ETGVDALAIAIGTAHGPYKG------VPKLDFDRLAKIRELV-NIPLVLHG-  209 (284)
T ss_pred             CCCCCHHHHHHHHH--------------HHCCCEEEHHHCCCCCCCCC------CCCCCHHHHHHHHHHC-CCCEEEEC-
T ss_conf             02589999999999--------------87978770120566677689------8856999999998616-99989768-


Q ss_pred             CCCCCHHHHHCC--CCCCEEECCCCCCHHHHHHHCCCEE-EECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             100001342014--7872230467799899997079846-96888846770-998899999999999732599
Q gi|254780812|r  248 GAGYMLKNYRRL--TDSNAIGLDWSVPLSFALELQKEGP-VQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       248 g~~~~l~~~~~~--~g~d~isiD~~~dl~~a~~~~~~~~-lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~  316 (346)
                      |++-.-+++.+.  .|+.=+.++......+.+.+..... =-+.+||..++ ...+.+++.+++.++.++..|
T Consensus       210 gSGi~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~r~~l~~~~~~~d~~~~~~~~~~a~~~~v~~~i~lfGS~g  282 (284)
T PRK12857        210 SSGVPDEAIRKAISLGVRKVNIDTNIREAFVAALRRVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSAG  282 (284)
T ss_pred             CCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999809759974879999999999999986978589899999999999999999999968898


No 91 
>PRK13129 consensus
Probab=85.49  E-value=3.4  Score=22.27  Aligned_cols=21  Identities=29%  Similarity=0.456  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             32378777876421024532011
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLI  141 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLI  141 (346)
                      .+..+++.++.+|++.  ++|++
T Consensus        79 ~~~~~~~~~~~~r~~~--~~Piv   99 (267)
T PRK13129         79 TLEKVLEMLESLKGKL--TIPII   99 (267)
T ss_pred             CHHHHHHHHHHHHCCC--CCCEE
T ss_conf             7899999999854347--88889


No 92 
>PRK13124 consensus
Probab=85.44  E-value=3.4  Score=22.26  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             32378777876421024532011
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLI  141 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLI  141 (346)
                      .+..+++-++.+|++.  ++|++
T Consensus        69 ~~~~~~~~~~~~r~~~--~~piv   89 (257)
T PRK13124         69 NIVKAMELVGKMRKKV--TIPIV   89 (257)
T ss_pred             CHHHHHHHHHHHHCCC--CCCEE
T ss_conf             6899999999852447--88889


No 93 
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.88  E-value=3  Score=22.60  Aligned_cols=17  Identities=18%  Similarity=0.434  Sum_probs=8.8

Q ss_pred             HHHCCCEEEECCCCCCC
Q ss_conf             43244337316887522
Q gi|254780812|r   82 DALGRNVRFVENEGPRM   98 (346)
Q Consensus        82 ealG~~v~f~~~~GP~~   98 (346)
                      +.+|+++++....|-.+
T Consensus        55 ~~~~~~~~~~~~dG~~v   71 (279)
T PRK08385         55 EHFGVAVEVKKRDGETV   71 (279)
T ss_pred             HHCCCEEEEECCCCCEE
T ss_conf             97498899992889890


No 94 
>PRK13136 consensus
Probab=84.78  E-value=3.6  Score=22.05  Aligned_cols=52  Identities=27%  Similarity=0.337  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA  198 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a  198 (346)
                      .+..+++.++.+|++  .++|++        +++|                  -||     ++..-    -+|++...++
T Consensus        72 ~~~~~~~~v~~~r~~--~~~piv--------lM~Y------------------~N~-----i~~~G----~~f~~~~~~~  114 (253)
T PRK13136         72 TLHDVLTLITSFRQH--SEIPII--------LFTY------------------FNP-----LLAAG----DKIYQQMKSA  114 (253)
T ss_pred             CHHHHHHHHHHHCCC--CCCCEE--------EECC------------------CHH-----HHHHH----HHHHHHHHHC
T ss_conf             799999999982257--898889--------9865------------------179-----99979----9999999974


Q ss_pred             CCCEEEECC
Q ss_conf             981678438
Q gi|254780812|r  199 GVDVIQIFD  207 (346)
Q Consensus       199 Gad~iqIFD  207 (346)
                      |+|.+-|-|
T Consensus       115 GvdGlIipD  123 (253)
T PRK13136        115 GVDGCLVVD  123 (253)
T ss_pred             CCCCEECCC
T ss_conf             987200678


No 95 
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=83.90  E-value=4  Score=21.80  Aligned_cols=23  Identities=13%  Similarity=0.180  Sum_probs=10.4

Q ss_pred             HHHHHHCCCCCCCCCC----HHHHHCC
Q ss_conf             9999966998999976----1462312
Q gi|254780812|r    7 KILEVLQGNVINPPPI----WLMRQAG   29 (346)
Q Consensus         7 ~~l~al~g~~~~r~PV----W~MrQAG   29 (346)
                      .++++++.+-.+--=|    =-|+++|
T Consensus        19 ~LikaLk~~~~~~efvGvgG~~m~aeG   45 (381)
T COG0763          19 GLIKALKARYPDVEFVGVGGEKMEAEG   45 (381)
T ss_pred             HHHHHHHHHCCCEEEEEECCHHHHHCC
T ss_conf             999999863898389981767888655


No 96 
>KOG0369 consensus
Probab=83.86  E-value=3.9  Score=21.85  Aligned_cols=144  Identities=17%  Similarity=0.263  Sum_probs=78.6

Q ss_pred             HHHHHHH----HHHCCCCCCCHHHHHHHHCCCHHHHHHH--HHHHH----------------------HHHHHHHHHHHH
Q ss_conf             9999999----9612467765246775301372228999--99999----------------------999999777775
Q gi|254780812|r  146 APWTVAS----YMISGGFIKDHGQNRVFAYQNSRAFNWL--LDFLS----------------------DVSAEYLIAQIH  197 (346)
Q Consensus       146 gP~Tlas----YmieG~~sk~~~~~~~~~~~~p~~~~~l--l~~lt----------------------~~~~~yl~~Qi~  197 (346)
                      +|+|--+    |-+|.=|--.|...++|+++.|  |.+|  |.++.                      +++-.|+..-.+
T Consensus       588 aPyvah~f~~lfslE~WGGATFDVamRFLhEcP--WeRL~~lRkliPNIPFQmLLRGANavgYssyPDNviykFce~Ak~  665 (1176)
T KOG0369         588 APYVAHAFAGLFSLENWGGATFDVAMRFLHECP--WERLRELRKLIPNIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKK  665 (1176)
T ss_pred             CHHHHHHHHHHEEHHHCCCCHHHHHHHHHHCCH--HHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             537788764240044238831567899875193--899999997678985899751355133267871689999999985


Q ss_pred             CCCCEEEECCCCH----------------H-----------HCCHHHHHHHHCCCH------------------------
Q ss_conf             4981678438311----------------0-----------068356777612722------------------------
Q gi|254780812|r  198 AGVDVIQIFDTHA----------------G-----------CLGEHEFENYAARSV------------------------  226 (346)
Q Consensus       198 aGad~iqIFDs~a----------------g-----------~Ls~~~f~~f~~p~~------------------------  226 (346)
                      .|.|+.-+|||--                |           ++.|.- .+|.+.|.                        
T Consensus       666 nGmDiFRVFDsLN~lpnl~lGmeAagkAGGVVEAai~YtGDv~dp~r-tKY~L~YY~nlad~lV~agtHiL~IKDMAG~l  744 (1176)
T KOG0369         666 NGMDIFRVFDSLNYLPNLLLGMEAAGKAGGVVEAAICYTGDVLDPSR-TKYNLDYYLNLADKLVKAGTHILGIKDMAGVL  744 (1176)
T ss_pred             CCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCC
T ss_conf             48615661013310245455566541158758998850255578654-41147999989999986267188654442336


Q ss_pred             -----HHHHHHHHHHCCCCEEECCCCCCC-CCHHHHH--CCCCCCEEEC--CCCCCHHHHHHHCC-CEEEECC-CCHH
Q ss_conf             -----689999863088623602431100-0013420--1478722304--67799899997079-8469688-8846
Q gi|254780812|r  227 -----GRIISAVRRKYPNAKFISFAKGAG-YMLKNYR--RLTDSNAIGL--DWSVPLSFALELQK-EGPVQGN-LDPM  292 (346)
Q Consensus       227 -----kkI~~~ik~~~~~vpiI~f~~g~~-~~l~~~~--~~~g~d~isi--D~~~dl~~a~~~~~-~~~lqGN-ldP~  292 (346)
                           +-++.++++++|+.||-.+..+++ ...-.|.  ...|+|++-+  |+...|..--..+- -.++||| +|..
T Consensus       745 KP~aa~lLi~alRdk~PdlPiHvHtHDtsGagVAsMlaca~AGADVVDvA~dSMSGmTSQPSmgA~vAsl~Gt~~Dt~  822 (1176)
T KOG0369         745 KPEAAKLLIGALRDKFPDLPIHVHTHDTSGAGVASMLACALAGADVVDVAVDSMSGMTSQPSMGALVASLQGTPLDTG  822 (1176)
T ss_pred             CHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf             768889999988740899853774167763879999999873996044330014566568851032200258756678


No 97 
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.76  E-value=1.6  Score=24.61  Aligned_cols=80  Identities=23%  Similarity=0.116  Sum_probs=38.0

Q ss_pred             CCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCC--HHHHH
Q ss_conf             8167843831100683567776127226899998630886236024311000013420147872230467799--89999
Q gi|254780812|r  200 VDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVP--LSFAL  277 (346)
Q Consensus       200 ad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~d--l~~a~  277 (346)
                      -|.|+|+|-.-....          -+.+.++.+|+..|..+|..=+.... ......+ .|+|.+=+|+--+  ++++.
T Consensus       169 ~D~iLIKdNHi~~~g----------~i~~ai~~~r~~~~~~kIeVEv~sl~-q~~ea~~-~gaDiImLDNms~e~~~~av  236 (288)
T PRK07896        169 GDAALIKDNHVAAAG----------SVVAALRAVRAAAPDLPCEVEVDSLE-QLDEVLA-EGAELILLDNFPVWQTQEAV  236 (288)
T ss_pred             CCEEEEEHHHHHHCC----------CHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHH-CCCCEEEECCCCHHHHHHHH
T ss_conf             542898621465308----------69999999998589961999979799-9999874-69999997799999999999


Q ss_pred             HH----CCC--EEEECCCCH
Q ss_conf             70----798--469688884
Q gi|254780812|r  278 EL----QKE--GPVQGNLDP  291 (346)
Q Consensus       278 ~~----~~~--~~lqGNldP  291 (346)
                      +.    .++  +-..||+++
T Consensus       237 ~~~~~~~~~v~lEaSGgI~~  256 (288)
T PRK07896        237 QRRDARAPTVLLESSGGLTL  256 (288)
T ss_pred             HHHHCCCCCEEEEEECCCCH
T ss_conf             99837698748999889999


No 98 
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=83.74  E-value=1.8  Score=24.24  Aligned_cols=17  Identities=29%  Similarity=0.573  Sum_probs=8.1

Q ss_pred             HHHCCCEEEECCCCCCC
Q ss_conf             43244337316887522
Q gi|254780812|r   82 DALGRNVRFVENEGPRM   98 (346)
Q Consensus        82 ealG~~v~f~~~~GP~~   98 (346)
                      +.+|+++++....|-.+
T Consensus        52 ~~~~~~v~~~~~dG~~v   68 (272)
T cd01573          52 ELLGLEVDLAAASGSRV   68 (272)
T ss_pred             HHHCCEEEEECCCCCEE
T ss_conf             98498999994879890


No 99 
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=83.33  E-value=3.5  Score=22.18  Aligned_cols=72  Identities=18%  Similarity=0.290  Sum_probs=42.7

Q ss_pred             CCCCEEECCCCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCCHHHHHHHH
Q ss_conf             78722304677998999970798469688884677099889999999999973259928960897633-66889999999
Q gi|254780812|r  260 TDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITP-QVDPKNVLDLV  338 (346)
Q Consensus       260 ~g~d~isiD~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p-~tp~eNv~~~v  338 (346)
                      .|-...++||..-...  ....+..|-|.|+|       +.|    .+.++.....+-=+|.|=...| .-+++.|++|+
T Consensus       136 ~GGtG~~fDW~~l~~~--~~~~~~~LAGGL~p-------~NV----~~ai~~~~p~gvDvSSGVE~~pG~KD~~kv~~f~  202 (208)
T COG0135         136 PGGTGQTFDWNLLPKL--RLSKPVMLAGGLNP-------DNV----AEAIALGPPYGVDVSSGVESSPGIKDPAKVKAFF  202 (208)
T ss_pred             CCCCCCEECHHHCCCC--CCCCCEEEECCCCH-------HHH----HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf             8978867797770542--45698799778898-------999----9999835983798155311689988999999999


Q ss_pred             HHHHHC
Q ss_conf             999730
Q gi|254780812|r  339 KTVRSE  344 (346)
Q Consensus       339 ~~vr~~  344 (346)
                      +++|.+
T Consensus       203 ~~vk~~  208 (208)
T COG0135         203 EAVKRA  208 (208)
T ss_pred             HHHHCC
T ss_conf             998529


No 100
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=83.19  E-value=2.6  Score=23.05  Aligned_cols=121  Identities=14%  Similarity=0.206  Sum_probs=65.7

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             30137222899999999999999777775498167843-83110068356777612722689999863088623602431
Q gi|254780812|r  169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK  247 (346)
Q Consensus       169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~  247 (346)
                      -+|.+|+.+.++.+              +.|+|++.+- -+.-|.-..+-  +    -.-.+++++++.. ++|+..|. 
T Consensus       152 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~yk~~p--~----L~~~~L~~I~~~~-~vPLVLHG-  209 (284)
T PRK09195        152 ALYTDPAQAREFVE--------------ATGIDSLAVAIGTAHGMYKSAP--K----LDFDRLENIRQWV-NIPLVLHG-  209 (284)
T ss_pred             CCCCCHHHHHHHHH--------------HHCCCEEEEEECCCCCCCCCCC--C----CCHHHHHHHHHHH-CCCEEEEC-
T ss_conf             35689999999999--------------7599889865065455558988--4----5999999999974-99989878-


Q ss_pred             CCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HHH---CCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             100001342014--78722304677998999---970---7984696888846770-998899999999999732599
Q gi|254780812|r  248 GAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LEL---QKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       248 g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~~---~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~  316 (346)
                      |++-.-+++.+.  .|+.=++++......+.   ++.   .++     ..||..++ ...+.+++.+++.++.++..|
T Consensus       210 gSG~~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~r~~l~~~p~-----~~dp~~~~~~~~~a~~~~v~~~i~~~GS~g  282 (284)
T PRK09195        210 ASGLPTKDIQQTIKLGICKVNVATELKIAFSQALKNYLTEHPE-----ANDPRHYLQPAKAAMKDVVSKVIADCGCEG  282 (284)
T ss_pred             CCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9998999999999849769986858999999999999986879-----688699999999999999999999968898


No 101
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=83.16  E-value=4.2  Score=21.60  Aligned_cols=79  Identities=18%  Similarity=0.167  Sum_probs=36.2

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC----CCHHHHHCCCCCCE
Q ss_conf             99977777549816784383110068356777612722689999863088623602431100----00134201478722
Q gi|254780812|r  189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG----YMLKNYRRLTDSNA  264 (346)
Q Consensus       189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~----~~l~~~~~~~g~d~  264 (346)
                      ++.++.--++|||++++.=+.---.+.+.    ...|.++|.++.     +.|+++|-+...    ..+..+.+. -.++
T Consensus        85 i~la~~A~~~Gadai~v~pPyy~~~~~~~----l~~~~~~ia~a~-----~lPi~lYn~~~~~~~~~~l~~L~~~-~pni  154 (296)
T PRK03620         85 IEYAQAAERAGADGILLLPPYLTEAPQEG----LAAHVEAVCKST-----DLGVIVYNRDNAVLTADTLARLAER-CPNL  154 (296)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHHC-----CCCEEEECCCCCCCCHHHHHHHHHH-CCCE
T ss_conf             99999999829998996698678999999----999999999831-----8997751788877699999999972-8988


Q ss_pred             EECCC-CCCHHHHH
Q ss_conf             30467-79989999
Q gi|254780812|r  265 IGLDW-SVPLSFAL  277 (346)
Q Consensus       265 isiD~-~~dl~~a~  277 (346)
                      +++=+ .-|+....
T Consensus       155 vgiKdss~d~~~~~  168 (296)
T PRK03620        155 IGFKDGVGDIELMV  168 (296)
T ss_pred             EEEEECCCCHHHHH
T ss_conf             99995868899999


No 102
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=83.13  E-value=4.2  Score=21.59  Aligned_cols=53  Identities=19%  Similarity=0.118  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf             9999999777775498167843831100683567776127226899998630886236024
Q gi|254780812|r  185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF  245 (346)
Q Consensus       185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f  245 (346)
                      |+.++++++.-.++|||+++++=|.-.-.+.+.-.    .|.+++++.    .++.|+++|
T Consensus        82 ~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~~----~~~~~i~~~----~~~~piiiY  134 (288)
T cd00954          82 LKESQELAKHAEELGYDAISAITPFYYKFSFEEIK----DYYREIIAA----AASLPMIIY  134 (288)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHH----HHHHHHHHH----CCCCCEEEE
T ss_conf             99999999999864978677379988799979999----999999985----779965432


No 103
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=83.11  E-value=1.7  Score=24.32  Aligned_cols=63  Identities=22%  Similarity=0.250  Sum_probs=25.8

Q ss_pred             HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC-CCHHHHHCCCCCCEEECCC
Q ss_conf             77777549816784383110068356777612722689999863088623602431100-0013420147872230467
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG-YMLKNYRRLTDSNAIGLDW  269 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~-~~l~~~~~~~g~d~isiD~  269 (346)
                      +..-+++|||+||+ |    ..+|++.        ++.++.++...|++ .+--++|.+ ..+..|.. +|+|++|..+
T Consensus       202 ~~ea~~~gaD~IlL-D----nmsp~~l--------~~av~~~~~~~~~~-~lEaSGGI~~~ni~~yA~-tGVD~i~tsa  265 (284)
T PRK06096        202 AIAALRAQPDVLQL-D----KFSPQQA--------TEIAQIAPSLAPHC-TLALTGGINLTTLKNYLD-CGIRLFITSA  265 (284)
T ss_pred             HHHHHHCCCCEEEE-C----CCCHHHH--------HHHHHHHHHHCCCE-EEEEECCCCHHHHHHHHH-CCCCEEEECC
T ss_conf             99998579999996-8----9899999--------99999987217977-999989999999999998-0999998282


No 104
>PRK13135 consensus
Probab=82.95  E-value=4.3  Score=21.54  Aligned_cols=61  Identities=21%  Similarity=0.340  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA  198 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a  198 (346)
                      .+..+++.++.+|++.  ++|++        |++|.                  ||-     +.   --.-+|++.-.++
T Consensus        77 ~~~~~~~~~~~~r~~~--~~Piv--------lM~Y~------------------N~i-----~~---yG~e~F~~~~~~~  120 (267)
T PRK13135         77 TLPRILAMVRSVRRRC--QVPIV--------LMGYY------------------NPI-----FA---YGLERFAADAAAA  120 (267)
T ss_pred             CHHHHHHHHHHHHCCC--CCCEE--------EEECC------------------HHH-----HH---HHHHHHHHHHHHC
T ss_conf             4999999999863358--99889--------98423------------------099-----88---4689999999974


Q ss_pred             CCCEEEECCCCHHHCCHHHHHH
Q ss_conf             9816784383110068356777
Q gi|254780812|r  199 GVDVIQIFDTHAGCLGEHEFEN  220 (346)
Q Consensus       199 Gad~iqIFDs~ag~Ls~~~f~~  220 (346)
                      |+|.+-|-|     |++++-++
T Consensus       121 GvdGlIipD-----LP~ee~~~  137 (267)
T PRK13135        121 GVDGVLLVD-----LPPEEAEE  137 (267)
T ss_pred             CCCEEECCC-----CCHHHHHH
T ss_conf             997476378-----99788899


No 105
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=82.29  E-value=4  Score=21.76  Aligned_cols=145  Identities=17%  Similarity=0.099  Sum_probs=65.0

Q ss_pred             HHCCCCEEEECCCCEECC---------HHHCCCEEEECCCCCCCCCCCCHHHH---HCCCCC----HHHHHHHHHHHHHH
Q ss_conf             762987265213320010---------43244337316887522233333554---205670----12344323787778
Q gi|254780812|r   64 RRYNFDAAILFSDILVIA---------DALGRNVRFVENEGPRMDPITTQEIY---LLNPNI----DLFLNYLLPIFQSI  127 (346)
Q Consensus        64 ~r~~~DaaIlFsDIl~~~---------ealG~~v~f~~~~GP~~~p~~~~~~~---~~~~~~----~~~~~~l~~v~eAi  127 (346)
                      +.+|-||..|-..+|...         ..+|+++=.        |--..++..   ....+.    ......+..-++..
T Consensus       130 ~~~GAdaiLLI~~~L~~~~l~~l~~~a~~lgl~~Lv--------Evh~~~el~~a~~~~~~iiGiNnRnL~tf~vdl~~t  201 (459)
T PRK09427        130 RYYQADAILLMLSVLDDEQYRQLAAVAHSLNMGVLT--------EVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRT  201 (459)
T ss_pred             HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEE--------EECCHHHHHHHHHCCCCEEEEECCCCCCEEECHHHH
T ss_conf             980998999870228999999999999982990799--------968999999998489998998789886214877999


Q ss_pred             HHHHHCCCCCCHHHHHHH--HHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHH-HHHHH---HHH-HHHHHHHHHHHHCC
Q ss_conf             764210245320111147--999999996124677652467753013-72228-99999---999-99999977777549
Q gi|254780812|r  128 SILRKKLPNHITLIGFCG--APWTVASYMISGGFIKDHGQNRVFAYQ-NSRAF-NWLLD---FLS-DVSAEYLIAQIHAG  199 (346)
Q Consensus       128 ~~~k~~l~~~~pLIGF~G--gP~TlasYmieG~~sk~~~~~~~~~~~-~p~~~-~~ll~---~lt-~~~~~yl~~Qi~aG  199 (346)
                      ..+...+++++.+|.=.|  +|-.+..+ -++  ...|+..-.+|.. ||+.+ .+|+-   ++. =...+-+.+-+++|
T Consensus       202 ~~l~~~ip~~~~~vsESGI~~~~dv~~l-~~~--~~~~LvGe~lmr~~d~~~~~r~l~~g~~KICGIT~~eDA~~a~~~G  278 (459)
T PRK09427        202 RELAPLIPADVTVISESGIYTHAQVREL-SPF--VNGFLIGSSLMAEDDLDLAVRKLILGENKVCGLTRPQDAKAAYDAG  278 (459)
T ss_pred             HHHHHHCCCCCEEEECCCCCCHHHHHHH-HHH--CCEEEECHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
T ss_conf             9999768999749973799999999999-843--9999978587579998999999737898467899899999999849


Q ss_pred             CCEEE-ECCC-CHHHCCHHHHH
Q ss_conf             81678-4383-11006835677
Q gi|254780812|r  200 VDVIQ-IFDT-HAGCLGEHEFE  219 (346)
Q Consensus       200 ad~iq-IFDs-~ag~Ls~~~f~  219 (346)
                      ||++- ||-+ +--.++++.-.
T Consensus       279 AD~iGfIF~~~SpR~Vs~e~Ak  300 (459)
T PRK09427        279 AVYGGLIFVEKSPRYVSLEQAQ  300 (459)
T ss_pred             CCEEEEEEECCCCCCCCHHHHH
T ss_conf             9989899726988879999999


No 106
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=82.14  E-value=3.7  Score=22.03  Aligned_cols=27  Identities=15%  Similarity=0.236  Sum_probs=13.1

Q ss_pred             ECCCCCCC-CCHHHHHCCCCCCEEECCCC
Q ss_conf             02431100-00134201478722304677
Q gi|254780812|r  243 ISFAKGAG-YMLKNYRRLTDSNAIGLDWS  270 (346)
Q Consensus       243 I~f~~g~~-~~l~~~~~~~g~d~isiD~~  270 (346)
                      +--++|.+ ..+..|.. +|.|.||+.|-
T Consensus       237 lEaSGgIt~~ni~~yA~-tGVD~IS~gal  264 (280)
T COG0157         237 LEASGGITLENIREYAE-TGVDVISVGAL  264 (280)
T ss_pred             EEEECCCCHHHHHHHHH-CCCCEEEECCC
T ss_conf             99758978778999862-69979980733


No 107
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=81.84  E-value=3.4  Score=22.26  Aligned_cols=41  Identities=20%  Similarity=0.127  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHCC-CCEEECCCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf             689999863088-6236024311000013420147872230467
Q gi|254780812|r  227 GRIISAVRRKYP-NAKFISFAKGAGYMLKNYRRLTDSNAIGLDW  269 (346)
Q Consensus       227 kkI~~~ik~~~~-~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~  269 (346)
                      .+.++.+|++.| ..++..=+..... .....+ .|+|++=+|+
T Consensus       169 ~~av~~~r~~~~~~~~IeVEv~s~~e-~~~a~~-~gadiI~LDn  210 (268)
T cd01572         169 TEAVRRARAAAPFTLKIEVEVETLEQ-LKEALE-AGADIIMLDN  210 (268)
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCHHH-HHHHHH-CCCCEEEECC
T ss_conf             99999999867998529999488999-999997-5999999779


No 108
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process.
Probab=81.44  E-value=2  Score=23.92  Aligned_cols=107  Identities=20%  Similarity=0.267  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC--CHHHH-HH--H-HCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             237877787642102453201111479999999961246776--52467-75--3-013722289999999999999977
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIK--DHGQN-RV--F-AYQNSRAFNWLLDFLSDVSAEYLI  193 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk--~~~~~-~~--~-~~~~p~~~~~ll~~lt~~~~~yl~  193 (346)
                      -.+-.+=|+.+|++++|. ==||.||=|        ||-+..  +-+.. ..  . -.++|           +.-..||+
T Consensus       121 F~YA~DLV~yIr~~YGD~-F~IgVAGYP--------EgHpe~i~~Gla~~~~kd~GheqdP-----------~~DL~yLK  180 (312)
T TIGR00677       121 FKYAVDLVKYIRSKYGDY-FCIGVAGYP--------EGHPEAIEDGLASNEAKDVGHEQDP-----------EKDLKYLK  180 (312)
T ss_pred             HHHHHHHHHHHHHHCCCC-CCEEECCCC--------CCCCHHHHHHCCCCCCCCCCCCCCH-----------HHHHHHHH
T ss_conf             576678899877523880-211202787--------7783466520257753246754573-----------67899998


Q ss_pred             HHHHCCCCEE--EECCCCHHHCCHHHHHHHHCCCHHHHHHHHHH-HCCCCEEE--CCCCCCCCCHHHHHCCC
Q ss_conf             7775498167--84383110068356777612722689999863-08862360--24311000013420147
Q gi|254780812|r  194 AQIHAGVDVI--QIFDTHAGCLGEHEFENYAARSVGRIISAVRR-KYPNAKFI--SFAKGAGYMLKNYRRLT  260 (346)
Q Consensus       194 ~Qi~aGad~i--qIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~-~~~~vpiI--~f~~g~~~~l~~~~~~~  260 (346)
                      ..|++|||-|  |+|      -..+.|-+|+        +.+++ .+-++||+  .+|=.+...+..+.+.+
T Consensus       181 ~KV~aGADfIiTQlF------YDvD~Fl~fv--------~~~R~r~Gi~~PI~PGIMPI~~Y~~F~R~~k~s  238 (312)
T TIGR00677       181 EKVDAGADFIITQLF------YDVDNFLKFV--------NDVRARIGIDCPIVPGIMPINNYKSFLRRAKLS  238 (312)
T ss_pred             HHHCCCCCEEEECCH------HHHHHHHHHH--------HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             863058974752117------7799999999--------998986587767578867303579999987615


No 109
>pfam02581 TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyses the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI.
Probab=81.35  E-value=4.9  Score=21.15  Aligned_cols=83  Identities=19%  Similarity=0.298  Sum_probs=48.1

Q ss_pred             HHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf             99777775498167843831100683567776127226899998630886236024311000013420147872230467
Q gi|254780812|r  190 EYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDW  269 (346)
Q Consensus       190 ~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~  269 (346)
                      +.++.-+++|+++||+-+..   ++.+.|.+.+    +++.+-+++.  ++++|..  +   . .++....++|.+++..
T Consensus        16 ~~~~~~l~~Gv~~vqlR~K~---~~~~~~~~~a----~~l~~i~~~~--~~~liin--~---~-~~lA~~~~~dGvHL~~   80 (180)
T pfam02581        16 EVVEEALKGGVTIVQLREKD---LDDRELLELA----ERLRALCRKY--GVPLIIN--D---R-VDLALAVGADGVHLGQ   80 (180)
T ss_pred             HHHHHHHHCCCCEEEECCCC---CCHHHHHHHH----HHHHHHHHHH--CCEEEEC--C---H-HHHHHHHCCCEEECCC
T ss_conf             99999998699999987898---7999999999----9999999982--9979987--8---5-9999972979894486


Q ss_pred             C-CCHHHHHHHCCCEEEEC
Q ss_conf             7-99899997079846968
Q gi|254780812|r  270 S-VPLSFALELQKEGPVQG  287 (346)
Q Consensus       270 ~-~dl~~a~~~~~~~~lqG  287 (346)
                      . .+..++|+..++..+.|
T Consensus        81 ~d~~~~~~r~~~~~~~iiG   99 (180)
T pfam02581        81 DDLPVAEARELLGPDKIIG   99 (180)
T ss_pred             CCCCHHHHHHHCCCCCEEE
T ss_conf             7667999998649776897


No 110
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase,  is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=81.10  E-value=4.1  Score=21.72  Aligned_cols=125  Identities=18%  Similarity=0.316  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-----
Q ss_conf             23787778764210245320111147999999---9961246776524677530137222899999999999999-----
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVA---SYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY-----  191 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~Tla---sYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y-----  191 (346)
                      .+..+++|+.+++++++  -+|| +|.=.|..   ...--|   -+|.-       -|-.-.++++.+-+.-+-|     
T Consensus        39 t~~a~~~i~~l~~~~~~--~~iG-aGTV~~~~~~~~a~~aG---a~Fiv-------sP~~~~~v~~~a~~~~~~~iPGv~  105 (190)
T cd00452          39 TPGALEAIRALRKEFPE--ALIG-AGTVLTPEQADAAIAAG---AQFIV-------SPGLDPEVVKAANRAGIPLLPGVA  105 (190)
T ss_pred             CCHHHHHHHHHHHHCCC--CEEE-ECCCCCHHHHHHHHHCC---CCEEE-------CCCCCHHHHHHHHHCCCCEECCCC
T ss_conf             80299999999986898--0896-52347799999999859---98997-------377999999999982996657879


Q ss_pred             ----HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC-CCCCHHHHHCCCCCCEEE
Q ss_conf             ----777775498167843831100683567776127226899998630886236024311-000013420147872230
Q gi|254780812|r  192 ----LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG-AGYMLKNYRRLTDSNAIG  266 (346)
Q Consensus       192 ----l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g-~~~~l~~~~~~~g~d~is  266 (346)
                          +..-.++|++.+.+|-.  +.+.+.+.+            .++.-+|+++++- ++| +-..+.+|.+ .|+.+++
T Consensus       106 TpsEi~~A~~~G~~~vK~FPa--~~~G~~~lk------------al~~pfp~~~~~p-tGGI~~~N~~~yl~-~gv~avG  169 (190)
T cd00452         106 TPTEIMQALELGADIVKLFPA--EAVGPAYIK------------ALKGPFPQVRFMP-TGGVSLDNAAEWLA-AGVVAVG  169 (190)
T ss_pred             CHHHHHHHHHCCCCEEEECCC--CCCCHHHHH------------HHHCCCCCCCEEE-ECCCCHHHHHHHHH-CCCEEEE
T ss_conf             999999999879998998955--114999999------------9855489993899-67999888999996-8998999


Q ss_pred             CCCCCCH
Q ss_conf             4677998
Q gi|254780812|r  267 LDWSVPL  273 (346)
Q Consensus       267 iD~~~dl  273 (346)
                      ++|...-
T Consensus       170 ~g~~l~~  176 (190)
T cd00452         170 GGSLLPK  176 (190)
T ss_pred             ECHHCCH
T ss_conf             5412588


No 111
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=80.59  E-value=5.2  Score=20.97  Aligned_cols=78  Identities=17%  Similarity=0.146  Sum_probs=42.9

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf             99977777549816784383110068356777612722689999863088623602431100001342014787223046
Q gi|254780812|r  189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLD  268 (346)
Q Consensus       189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD  268 (346)
                      .++++.-+++|+..||+-+-.   ++.+.+.+.+.    ++.+-.++ + ++|+|..     . -.+++...++|.+++.
T Consensus        22 ~~~ve~al~gGv~~vQlR~K~---~~~~e~~~~a~----~~~~l~~~-~-~v~lIIN-----D-~vdlA~~~~AdGVHLG   86 (211)
T PRK03512         22 VQWIERLLDAGVRTLQLRIKD---RRDEEVEADVV----AAIALGRR-Y-NARLFIN-----D-YWRLAIKHQAYGVHLG   86 (211)
T ss_pred             HHHHHHHHHCCCCEEEEECCC---CCHHHHHHHHH----HHHHHHHH-H-CCEEEEE-----C-CHHHHHHCCCCEEECC
T ss_conf             999999998799999981799---99999999999----99999998-0-9859997-----8-6899997199889659


Q ss_pred             CCC-CHHHHHHHCC
Q ss_conf             779-9899997079
Q gi|254780812|r  269 WSV-PLSFALELQK  281 (346)
Q Consensus       269 ~~~-dl~~a~~~~~  281 (346)
                      ..- +...+|++.+
T Consensus        87 q~Dl~~~~aR~~lg  100 (211)
T PRK03512         87 QEDLETTDLNAIRA  100 (211)
T ss_pred             CCCCCHHHHHHHCC
T ss_conf             65368899998669


No 112
>PRK08185 hypothetical protein; Provisional
Probab=80.53  E-value=2.2  Score=23.53  Aligned_cols=126  Identities=11%  Similarity=0.159  Sum_probs=66.1

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             3013722289999999999999977777549816784-383110068356777612722689999863088623602431
Q gi|254780812|r  169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK  247 (346)
Q Consensus       169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~  247 (346)
                      .+|.+|+.+.++.+              +.|+|++.+ |-+.-|.-.+..=-+.    .-++++.+++.. ++|+..|. 
T Consensus       146 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGn~HG~Yk~~~~p~l----~~~~l~~I~~~~-~vPLVLHG-  205 (283)
T PRK08185        146 IIYTDPEQAEDFVS--------------RTGVDTLAVAIGTAHGIYPKDKKPKL----QMDILKEINERV-DIPLVLHG-  205 (283)
T ss_pred             CCCCCHHHHHHHHH--------------HHCCCEEEEECCCCCCCCCCCCCCCC----CHHHHHHHHHHC-CCCEEEEC-
T ss_conf             00489999999999--------------87999786332554555578898423----789999999864-99989758-


Q ss_pred             CCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HHHCCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             100001342014--78722304677998999---9707984696888846770-998899999999999732599
Q gi|254780812|r  248 GAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LELQKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       248 g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~~~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~  316 (346)
                      |++..-+++.+.  .|+.=+.++..+...+.   ++...+-  -...||..++ ...+.+++.+++.++.++..|
T Consensus       206 gSG~~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~~~~l~~~--p~~~d~~~~~~~~~~a~~~~v~~ki~~fGS~g  278 (283)
T PRK08185        206 GSANPDAEIAESVTLGVGKINISSDMKYAFFQKVREILVAN--PSWWEPNVIYPDAINAAKEVVRHKMKLFNSTG  278 (283)
T ss_pred             CCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999998693799848679999999999999859--77578799989999999999999999969987


No 113
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=80.18  E-value=5.4  Score=20.88  Aligned_cols=22  Identities=9%  Similarity=0.255  Sum_probs=12.2

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             7787642102453201111479
Q gi|254780812|r  125 QSISILRKKLPNHITLIGFCGA  146 (346)
Q Consensus       125 eAi~~~k~~l~~~~pLIGF~Gg  146 (346)
                      +.++..++..++++|+|--+|+
T Consensus        61 ~v~~~~v~~~~grvpviaG~g~   82 (299)
T COG0329          61 EVLEAVVEAVGGRVPVIAGVGS   82 (299)
T ss_pred             HHHHHHHHHHCCCCCEEEECCC
T ss_conf             9999999996897778986287


No 114
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=80.08  E-value=2.2  Score=23.58  Aligned_cols=43  Identities=14%  Similarity=0.082  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHCC-CCEEECCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf             2689999863088-62360243110000134201478722304677
Q gi|254780812|r  226 VGRIISAVRRKYP-NAKFISFAKGAGYMLKNYRRLTDSNAIGLDWS  270 (346)
Q Consensus       226 ~kkI~~~ik~~~~-~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~  270 (346)
                      +.+.++.+|+..| ..++..=+..... .....+ .|+|.+=+|+-
T Consensus       167 ~~~av~~~r~~~~~~~kIeVEv~tl~e-a~~a~~-~g~D~I~LDn~  210 (269)
T cd01568         167 ITEAVKRARAAAPFEKKIEVEVETLEE-AEEALE-AGADIIMLDNM  210 (269)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECCHHH-HHHHHH-CCCCEEEECCC
T ss_conf             999999999868998439999498999-999997-69999998798


No 115
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=79.94  E-value=2  Score=23.83  Aligned_cols=125  Identities=16%  Similarity=0.268  Sum_probs=66.6

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             30137222899999999999999777775498167843-83110068356777612722689999863088623602431
Q gi|254780812|r  169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK  247 (346)
Q Consensus       169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~  247 (346)
                      -.|.+|+.+.++.+              +.|+|++.+. -+.-|.-.+.. -+.-.    ++++++++.. ++|+..|. 
T Consensus       145 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGn~HG~yk~~~-p~L~~----~~L~~I~~~~-~vPLVlHG-  203 (276)
T cd00947         145 GLLTDPEEAEEFVE--------------ETGVDALAVAIGTSHGAYKGGE-PKLDF----DRLKEIAERV-NVPLVLHG-  203 (276)
T ss_pred             CCCCCHHHHHHHHH--------------HHCCCEEEEECCCCCCCCCCCC-CCCCH----HHHHHHHHHC-CCCEEEEC-
T ss_conf             33489999999999--------------8598878764164344568999-86488----9999999973-99879757-


Q ss_pred             CCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HHHCCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             100001342014--78722304677998999---9707984696888846770-998899999999999732599
Q gi|254780812|r  248 GAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LELQKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       248 g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~~~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~  316 (346)
                      |++..-+++.+.  .|+.=++++......+.   ++....-  -...||..++ ...+.+++.+++.++.++..|
T Consensus       204 gSG~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~r~~~~~~--~~~~d~~~~~~~~~~a~~~~v~~~i~lfGS~G  276 (276)
T cd00947         204 GSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAEN--PKEFDPRKYLAPAIEAVKEVVKHKMELFGSAG  276 (276)
T ss_pred             CCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999998497599867389999999999999868--88679799999999999999999999858999


No 116
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS.  Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=79.79  E-value=5.5  Score=20.80  Aligned_cols=144  Identities=14%  Similarity=0.065  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEC-CC---CHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCC-CHHHHHCC
Q ss_conf             9999999777775498167843-83---1100683567776127226899998630886236024311000-01342014
Q gi|254780812|r  185 SDVSAEYLIAQIHAGVDVIQIF-DT---HAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGY-MLKNYRRL  259 (346)
Q Consensus       185 t~~~~~yl~~Qi~aGad~iqIF-Ds---~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~-~l~~~~~~  259 (346)
                      .+...+++..+++.|||+|-|- +|   .+..+|++.=.+-..|.++.|.+.    + ++++..   ++.. ..-..+-.
T Consensus        23 ~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~~Rl~pvi~~l~~~----~-~~~iSI---DT~~~~Va~~al~   94 (257)
T cd00739          23 LDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGE----L-DVLISV---DTFRAEVARAALE   94 (257)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----C-CCCEEE---ECCCHHHHHHHHH
T ss_conf             9999999999998799899979875899998699888898899999999860----7-982899---7997599999998


Q ss_pred             CCCCEEE-CCCC-CC--H-HHHHHHCCCEEEECCC-CHHHHC-----CC-HHHHHHHHHHHHHHHCC-----CCCEEEEC
Q ss_conf             7872230-4677-99--8-9999707984696888-846770-----99-88999999999997325-----99289608
Q gi|254780812|r  260 TDSNAIG-LDWS-VP--L-SFALELQKEGPVQGNL-DPMRLV-----VG-NQVMIDGVNAILDVLGS-----GPFIFNLG  322 (346)
Q Consensus       260 ~g~d~is-iD~~-~d--l-~~a~~~~~~~~lqGNl-dP~~L~-----~~-~e~i~~~~~~~l~~~~~-----~~~I~nLG  322 (346)
                      .|++.|. +..- .|  + +.+++..-.+++|=+- .|..+.     .+ -+++.....+-++....     ..-|+-.|
T Consensus        95 ~Ga~iINDisg~~~d~~m~~~va~~~~~~ilmH~~g~p~~m~~~~~~~dv~~~i~~~f~~~i~~l~~~Gi~~~~IiiDPG  174 (257)
T cd00739          95 AGADIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPG  174 (257)
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             49989975342447778999999849999997689984222337863309999999999999999987998251997088


Q ss_pred             CCCCCCCCHHHHHHH
Q ss_conf             976336688999999
Q gi|254780812|r  323 HGITPQVDPKNVLDL  337 (346)
Q Consensus       323 hGi~p~tp~eNv~~~  337 (346)
                      .|. ..|+.+|++.+
T Consensus       175 ~GF-gKt~~~n~~ll  188 (257)
T cd00739         175 IGF-GKTPEHNLELL  188 (257)
T ss_pred             CCC-CCCHHHHHHHH
T ss_conf             787-88879999999


No 117
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205   This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=79.34  E-value=3.2  Score=22.48  Aligned_cols=52  Identities=23%  Similarity=0.352  Sum_probs=34.6

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf             999777775498167843831100683567776127226899998630886236024311000
Q gi|254780812|r  189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGY  251 (346)
Q Consensus       189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~  251 (346)
                      .+-+++-+++|-|+|+|-=|..--++          -+..+++.+++++ ++|+|.|+.|.+.
T Consensus        17 ~eI~~a~~~~GTDail~GGs~gVt~~----------~~~~~~~~~~e~~-~~P~ilfPsn~~~   68 (242)
T TIGR01768        17 DEIAKAAAESGTDAILVGGSQGVTLD----------KLDQLIEALRERY-GVPIILFPSNLTN   68 (242)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCHH----------HHHHHHHHHHHCC-CCCEEEECCCCCC
T ss_conf             89999998358988982277870368----------8999999997405-9837984188742


No 118
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain.  DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=78.99  E-value=5.8  Score=20.63  Aligned_cols=113  Identities=18%  Similarity=0.168  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             23787778764210245320111147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG  199 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG  199 (346)
                      +.+.++.++.+|++++ +.|+|+...+.                        ..++.+..+.+.+.           ++|
T Consensus        83 ~~~~~~~~~~~~~~~~-~~~~i~si~~~------------------------~~~~~~~~~a~~~~-----------~~g  126 (299)
T cd02940          83 LEYWLKEIRELKKDFP-DKILIASIMCE------------------------YNKEDWTELAKLVE-----------EAG  126 (299)
T ss_pred             HHHHHHHHHHHHHCCC-CCCEEEEEECC------------------------CCHHHHHHHHHHHH-----------HCC
T ss_conf             9999999999875279-97379885178------------------------98789999999998-----------718


Q ss_pred             CCEEEECCCCHHHCCHHHHH-H--HHCCCHHHHHHHHHHHCCCCEEECCCCCCC--CCHHHH---HCCCCCCEEECCCCC
Q ss_conf             81678438311006835677-7--612722689999863088623602431100--001342---014787223046779
Q gi|254780812|r  200 VDVIQIFDTHAGCLGEHEFE-N--YAARSVGRIISAVRRKYPNAKFISFAKGAG--YMLKNY---RRLTDSNAIGLDWSV  271 (346)
Q Consensus       200 ad~iqIFDs~ag~Ls~~~f~-~--f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~--~~l~~~---~~~~g~d~isiD~~~  271 (346)
                      ||++-|==|.-...+...+- .  .-...++++++++++.. ++|++.  |=+-  ..+..+   ....|+|++.+-++.
T Consensus       127 ad~lElNiScPN~~~~~~~g~~~~~~~~~l~~i~~~v~~~~-~~Pi~v--KLsP~~~~i~~ia~~~~~~gadgiv~~Nt~  203 (299)
T cd02940         127 ADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIA--KLTPNITDIREIARAAKEGGADGVSAINTV  203 (299)
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCEEE--ECCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             88899826788987612345552449999999999998624-786489--628871549999999998599899997666


No 119
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=78.84  E-value=5.2  Score=20.99  Aligned_cols=170  Identities=18%  Similarity=0.202  Sum_probs=72.6

Q ss_pred             HHCCHHHHH-HHHHHHHHHCCCCEEEECCCCEECCHH--HC--CCEEEECCCCCCCCCCCCHH--HHHCCCCCHHHHHHH
Q ss_conf             842799999-987212876298726521332001043--24--43373168875222333335--542056701234432
Q gi|254780812|r   48 MCYTPEYTV-ELTLQPIRRYNFDAAILFSDILVIADA--LG--RNVRFVENEGPRMDPITTQE--IYLLNPNIDLFLNYL  120 (346)
Q Consensus        48 ~~~~pela~-evtl~p~~r~~~DaaIlFsDIl~~~ea--lG--~~v~f~~~~GP~~~p~~~~~--~~~~~~~~~~~~~~l  120 (346)
                      ++++-++-. +=.+..+...|+||. +.+|.-++--+  .|  .++..    ++..+-.+...  .....-..-....+-
T Consensus        72 ~~~~~~~~~~~~~l~~l~e~GvDav-iv~Dpg~i~l~~e~~p~l~ih~----S~q~~v~N~~~~~f~~~~G~~rvVl~rE  146 (347)
T COG0826          72 LLHNDELETLERYLDRLVELGVDAV-IVADPGLIMLARERGPDLPIHV----STQANVTNAETAKFWKELGAKRVVLPRE  146 (347)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEE-EECCHHHHHHHHHHCCCCCEEE----EEEEECCCHHHHHHHHHCCCEEEEECCC
T ss_conf             4164105689999999997598789-9718899999997589986899----6567217899999999769879981764


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHH--------HHHHHHHHHHCCCCCCCHH---HHHHHHC---C--CHHHH-----HH
Q ss_conf             3787778764210245320111147--------9999999961246776524---6775301---3--72228-----99
Q gi|254780812|r  121 LPIFQSISILRKKLPNHITLIGFCG--------APWTVASYMISGGFIKDHG---QNRVFAY---Q--NSRAF-----NW  179 (346)
Q Consensus       121 ~~v~eAi~~~k~~l~~~~pLIGF~G--------gP~TlasYmieG~~sk~~~---~~~~~~~---~--~p~~~-----~~  179 (346)
                      -. .+-|+.++++++ ++++=-|+=        |==.+++|+- |. +.|-.   ....+-+   .  ++...     ..
T Consensus       147 ls-~~ei~~i~~~~~-~veiEvfVhGalcia~SgRC~ls~~~~-~~-~~n~g~c~~~~r~~~~~~~~~~~~~~~~~~g~~  222 (347)
T COG0826         147 LS-LEEIKEIKEQTP-DVEIEVFVHGALCIAYSGRCLLSNYFT-GR-SANRGGCCQPCRWGYYLVETLCKGEVLSLNGTY  222 (347)
T ss_pred             CC-HHHHHHHHHHCC-CCEEEEEEECCHHHCCCCHHHHHHHCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEE
T ss_conf             89-999999997288-863899993453541373335666422-78-878887677666441002566776067436407


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH-HCCHHHHHHHHCCCHHHHH
Q ss_conf             99999999999977777549816784383110-0683567776127226899
Q gi|254780812|r  180 LLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG-CLGEHEFENYAARSVGRII  230 (346)
Q Consensus       180 ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag-~Ls~~~f~~f~~p~~kkI~  230 (346)
                      +|.----..++++...+++|+|.+-|    .| .-++++..+-+.-|.+.+-
T Consensus       223 ~~s~~dl~~~~~l~~L~~~GV~s~KI----eGR~k~~~yv~~v~~~yr~aid  270 (347)
T COG0826         223 LMSPKDLNLLEELPELIEAGVDSLKI----EGRMKSIEYVARVVKAYRQAID  270 (347)
T ss_pred             EECCHHHHHHHHHHHHHHCCCCEEEE----CCCCCCHHHHHHHHHHHHHHHH
T ss_conf             64520144577699999759848998----6876898999999999999998


No 120
>PRK13137 consensus
Probab=78.59  E-value=6  Score=20.55  Aligned_cols=61  Identities=20%  Similarity=0.209  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             23787778764210245320111147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG  199 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG  199 (346)
                      +..+++.++.+|++.  ++|++-        ++|.                  ||     ++.   --.-+|++.--++|
T Consensus        85 l~~~l~~~~~~r~~~--~~Pivl--------M~Y~------------------N~-----i~~---yG~e~F~~~a~~aG  128 (266)
T PRK13137         85 TRRTLELVRELRALT--DTPLVI--------MTYL------------------NP-----IYA---VGPEEFMRLFQEAG  128 (266)
T ss_pred             HHHHHHHHHHHCCCC--CCCEEE--------EECH------------------HH-----HHH---HCHHHHHHHHHHCC
T ss_conf             778999999755568--987899--------9345------------------89-----987---58999999999769


Q ss_pred             CCEEEECCCCHHHCCHHHHHHH
Q ss_conf             8167843831100683567776
Q gi|254780812|r  200 VDVIQIFDTHAGCLGEHEFENY  221 (346)
Q Consensus       200 ad~iqIFDs~ag~Ls~~~f~~f  221 (346)
                      +|.+-|-|     |++++..+|
T Consensus       129 vdGlIipD-----LP~eE~~~~  145 (266)
T PRK13137        129 VDGLILPD-----LPPDQDPEI  145 (266)
T ss_pred             CCEEEECC-----CCHHHHHHH
T ss_conf             60999479-----997888999


No 121
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=78.55  E-value=6  Score=20.54  Aligned_cols=127  Identities=17%  Similarity=0.276  Sum_probs=63.1

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCC--HHHHHHHHCCCHHHHHHHHHHHCCCCEEECCC
Q ss_conf             0137222899999999999999777775498167843-83110068--35677761272268999986308862360243
Q gi|254780812|r  170 AYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLG--EHEFENYAARSVGRIISAVRRKYPNAKFISFA  246 (346)
Q Consensus       170 ~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls--~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~  246 (346)
                      +|.+|+.+.++.+              +.|+|++.+. -+.-|.-.  +..   ..-...-+++++++++.+++|+..+.
T Consensus       162 ~yT~Peea~~Fv~--------------~TgvD~LAvaiGt~HG~Yk~~~~~---~~p~L~~d~L~~I~~~v~~vPLVLHG  224 (321)
T PRK07084        162 TYTQPEEVEDFVT--------------KTGVDSLAISIGTSHGAFKFKPGE---CPPPLRFDILAEIEKRIPGFPIVLHG  224 (321)
T ss_pred             HCCCHHHHHHHHH--------------HHCCCEEEEECCHHCCCCCCCCCC---CCCCCCHHHHHHHHHHCCCCCEEEEC
T ss_conf             0599999999999--------------869985864201003676678888---87443699999999857799868528


Q ss_pred             CCC--------------------CCCHHHHHC--CCCCCEEECCCCCCHHHH---HHHCCCEEEECCCCHHHHCC-CHHH
Q ss_conf             110--------------------000134201--478722304677998999---97079846968888467709-9889
Q gi|254780812|r  247 KGA--------------------GYMLKNYRR--LTDSNAIGLDWSVPLSFA---LELQKEGPVQGNLDPMRLVV-GNQV  300 (346)
Q Consensus       247 ~g~--------------------~~~l~~~~~--~~g~d~isiD~~~dl~~a---~~~~~~~~lqGNldP~~L~~-~~e~  300 (346)
                      +..                    +.--+++.+  ..|+.=+.+|......+.   |+...+.  -...||..++. ..+.
T Consensus       225 gS~~p~~~v~~~~~~Gg~~~~~~G~~de~i~~Ai~~GI~KvNi~Tdl~~a~~~~ir~~l~~~--p~~~Dpr~~l~~a~~a  302 (321)
T PRK07084        225 ASSVPQELVETINQHGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGRLAMTAAIRKVLDEK--PEEFDPRKYLGPARDA  302 (321)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH
T ss_conf             99882788777875288555678999999999998697699818078999999999999869--7768969999999999


Q ss_pred             HHHHHH-HHHHHHCCC
Q ss_conf             999999-999973259
Q gi|254780812|r  301 MIDGVN-AILDVLGSG  315 (346)
Q Consensus       301 i~~~~~-~~l~~~~~~  315 (346)
                      +++-++ ++++.++..
T Consensus       303 ~~~~v~~k~i~l~GS~  318 (321)
T PRK07084        303 LKKLYKHKNINVLGSN  318 (321)
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             9999999999984899


No 122
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=78.13  E-value=3.3  Score=22.38  Aligned_cols=124  Identities=9%  Similarity=0.131  Sum_probs=66.5

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             0137222899999999999999777775498167843-831100683567776127226899998630886236024311
Q gi|254780812|r  170 AYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG  248 (346)
Q Consensus       170 ~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g  248 (346)
                      .+.+|+.+.++.+.              .|+|++.+. -+.-|. ..+  -+.    .-+.++.+++.. ++|+..|. |
T Consensus       151 ~~T~Peea~~Fv~~--------------TgvD~LAvaiGt~HG~-~~~--p~l----~~~~l~~I~~~~-~iPLVLHG-g  207 (283)
T PRK07998        151 CKTEPEKVKTFVER--------------TGCDMLAVSIGNVHGL-DDI--PRI----DIPLLKRIAEVS-PVPLVIHG-G  207 (283)
T ss_pred             CCCCHHHHHHHHHH--------------HCCCEEEEECCCCCCC-CCC--CCC----CHHHHHHHHHHC-CCCEEEEC-C
T ss_conf             38999999999998--------------6889996404664567-878--863----899999988647-98789869-9


Q ss_pred             CCCCHHHHHC--CCCCCEEECCCCCCHHHHHHHCCCEEE-ECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             0000134201--478722304677998999970798469-6888846770-998899999999999732599
Q gi|254780812|r  249 AGYMLKNYRR--LTDSNAIGLDWSVPLSFALELQKEGPV-QGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       249 ~~~~l~~~~~--~~g~d~isiD~~~dl~~a~~~~~~~~l-qGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~  316 (346)
                      ++-.-+++.+  ..|+.=+.++......+...+.....- -...||.-++ ...+.+++.+++-++.+++.+
T Consensus       208 SGi~~e~i~~ai~~Gi~KiNi~Tel~~a~~~~~r~~l~~np~~~d~~~~~~~~~~a~~e~v~~ki~lfgS~~  279 (283)
T PRK07998        208 SGIPPDILRSFVNYRVAKVNIASDLRKAFITTVGKAYVNNHNEANLARVMASAKQAVEEDVYSKIKMMNENH  279 (283)
T ss_pred             CCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999999999869869995868999999999999986877689799979999999999999999878797


No 123
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=77.97  E-value=3.7  Score=22.01  Aligned_cols=105  Identities=19%  Similarity=0.304  Sum_probs=58.4

Q ss_pred             HHHHHHHHHCCCCEE--EECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC--CCCCCCCCHHHHHC-CCCCC
Q ss_conf             999777775498167--84383110068356777612722689999863088623602--43110000134201-47872
Q gi|254780812|r  189 AEYLIAQIHAGVDVI--QIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFIS--FAKGAGYMLKNYRR-LTDSN  263 (346)
Q Consensus       189 ~~yl~~Qi~aGad~i--qIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~--f~~g~~~~l~~~~~-~~g~d  263 (346)
                      +.|++.-|+||||-+  |+|      -..+.|.+|.        +.++..+-++|||=  .|=-+-..+..+++ .+|++
T Consensus       176 ~~nLK~KVdAGAd~aITQlF------Fdnd~y~rF~--------d~c~~aGI~~PI~PGIMPi~n~~q~~Rf~~~~~g~~  241 (302)
T TIGR00676       176 IENLKRKVDAGADYAITQLF------FDNDDYYRFV--------DRCRAAGIDVPIIPGIMPITNFKQLLRFAESLCGAE  241 (302)
T ss_pred             HHHHHHHHHHCCCCEEEEEE------CCHHHHHHHH--------HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             99999988627780331111------1566788899--------999987895000167236367678999966414884


Q ss_pred             EEECCCCCCHHHHHHH--CCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC--CEEEE
Q ss_conf             2304677998999970--7984696888846770-998899999999999732599--28960
Q gi|254780812|r  264 AIGLDWSVPLSFALEL--QKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP--FIFNL  321 (346)
Q Consensus       264 ~isiD~~~dl~~a~~~--~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~--~I~nL  321 (346)
                             ++-.-.+++  ..+       ||..+. -+-|-..+-++++++.+-.+=  |.+|-
T Consensus       242 -------iP~~L~~~l~~~~~-------D~~~~~~~G~e~A~~q~~~L~~~GV~g~HfYTlN~  290 (302)
T TIGR00676       242 -------IPAWLVKRLEKYED-------DPEEVRAVGIEYATDQCEDLIAEGVPGIHFYTLNR  290 (302)
T ss_pred             -------CHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHCCC
T ss_conf             -------20899999863048-------98899999999999999999976897211210488


No 124
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain.  Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=77.94  E-value=4.1  Score=21.67  Aligned_cols=14  Identities=29%  Similarity=0.442  Sum_probs=8.3

Q ss_pred             HHHHHHCCCCEEEE
Q ss_conf             77777549816784
Q gi|254780812|r  192 LIAQIHAGVDVIQI  205 (346)
Q Consensus       192 l~~Qi~aGad~iqI  205 (346)
                      ++.-.+||.|.|+|
T Consensus       156 A~rA~~AGfDgVEI  169 (382)
T cd02931         156 AVIAKEAGFDGVEI  169 (382)
T ss_pred             HHHHHHCCCCEEEE
T ss_conf             99999849998996


No 125
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=77.81  E-value=3.7  Score=22.05  Aligned_cols=123  Identities=17%  Similarity=0.246  Sum_probs=67.1

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC-CCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             301372228999999999999997777754981678438-3110068356777612722689999863088623602431
Q gi|254780812|r  169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFD-THAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK  247 (346)
Q Consensus       169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFD-s~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~  247 (346)
                      -+|.+|+.+.++.+              +.|+|++.+.= +.-|.-..+      -.-.-++++.+++.. ++|+..|. 
T Consensus       153 ~~~T~pe~a~~Fv~--------------~TgvD~LAvaiGn~HG~yk~~------p~l~~~~l~~i~~~~-~vPLVLHG-  210 (285)
T PRK07709        153 VIYADPAECKHLVE--------------ATGIDCLAPALGSVHGPYKGE------PNLGFAEMEQVRDFT-GVPLVLHG-  210 (285)
T ss_pred             CCCCCHHHHHHHHH--------------HHCCCEEEHHHCCCCCCCCCC------CCCCHHHHHHHHHCC-CCCEEEEC-
T ss_conf             51579999999997--------------318788842205555776898------876699999998405-99879649-


Q ss_pred             CCCCCHHHHHC--CCCCCEEECCCCCCHHHH---HH-HCCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             10000134201--478722304677998999---97-07984696888846770-998899999999999732599
Q gi|254780812|r  248 GAGYMLKNYRR--LTDSNAIGLDWSVPLSFA---LE-LQKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       248 g~~~~l~~~~~--~~g~d~isiD~~~dl~~a---~~-~~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~  316 (346)
                      |++..-+++.+  ..|+.=+.++......+.   ++ +..+   -...||..++ ...+.+++.+++.++.++..|
T Consensus       211 gSG~~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~~~~l~~~---~~~~dp~~~~~~~~~a~~~~v~~ki~~fGS~g  283 (285)
T PRK07709        211 GTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKD---QEVYDPRKFIGPGRDAIKATVIGKIREFGSNG  283 (285)
T ss_pred             CCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999998598599988288999999999999739---76479799999999999999999999848898


No 126
>PRK09389 (R)-citramalate synthase; Provisional
Probab=77.63  E-value=3.4  Score=22.27  Aligned_cols=52  Identities=17%  Similarity=0.104  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             99999777775498167843831100683567776127226899998630886236024311
Q gi|254780812|r  187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG  248 (346)
Q Consensus       187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g  248 (346)
                      +..+.+++-+++|||.|.+-||.+..+ |..+.+        +++.+++.. ++|+-.||.+
T Consensus       143 fl~e~~~~a~~aga~~i~l~DTvG~~~-P~~~~~--------~i~~l~~~~-~~~i~vH~HN  194 (487)
T PRK09389        143 FLKELYRAGIEAGADRICFCDTVGILT-PERSYE--------LFKRLSESL-KIPISIHCHN  194 (487)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCC-HHHHHH--------HHHHHCCCC-CCEEEEEECC
T ss_conf             999999999973899622488888879-999999--------986300467-8548997059


No 127
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.50  E-value=5.4  Score=20.85  Aligned_cols=17  Identities=12%  Similarity=0.345  Sum_probs=7.0

Q ss_pred             CHHHHHCCCCCCEEECCC
Q ss_conf             013420147872230467
Q gi|254780812|r  252 MLKNYRRLTDSNAIGLDW  269 (346)
Q Consensus       252 ~l~~~~~~~g~d~isiD~  269 (346)
                      .+.+|.. +|+|.||+.+
T Consensus       249 ni~~yA~-tGvD~IS~g~  265 (281)
T PRK06106        249 TAPAIAA-SGVDLISVGW  265 (281)
T ss_pred             HHHHHHH-CCCCEEECCH
T ss_conf             9999997-3999998384


No 128
>PRK13140 consensus
Probab=77.49  E-value=6.4  Score=20.34  Aligned_cols=53  Identities=25%  Similarity=0.470  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA  198 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a  198 (346)
                      .+..+++.++.+|++.  ++|++        +++|.                  ||     ++..   -.-+|++.-.++
T Consensus        74 ~~~~~~~~~~~~r~~~--~~piv--------lM~Y~------------------N~-----i~~~---G~e~F~~~~~~~  117 (257)
T PRK13140         74 TLKLLFEQLKDIRKEV--QIPLI--------LMGYL------------------NP-----IMQY---GFEKFCKKCAET  117 (257)
T ss_pred             CHHHHHHHHHHHHCCC--CCCEE--------EEECH------------------HH-----HHHH---CHHHHHHHHHHC
T ss_conf             8999999999974368--98889--------99055------------------99-----9851---799999999984


Q ss_pred             CCCEEEECC
Q ss_conf             981678438
Q gi|254780812|r  199 GVDVIQIFD  207 (346)
Q Consensus       199 Gad~iqIFD  207 (346)
                      |+|.+-|-|
T Consensus       118 GvdGlIipD  126 (257)
T PRK13140        118 GIDGVIIPD  126 (257)
T ss_pred             CCCEEEECC
T ss_conf             998698359


No 129
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=77.08  E-value=6.5  Score=20.28  Aligned_cols=14  Identities=43%  Similarity=0.890  Sum_probs=6.0

Q ss_pred             HHHHHHHCCCCEEE
Q ss_conf             99986308862360
Q gi|254780812|r  230 ISAVRRKYPNAKFI  243 (346)
Q Consensus       230 ~~~ik~~~~~vpiI  243 (346)
                      ++.+|+.+|++|+|
T Consensus       126 ik~ir~~~p~~~Ii  139 (325)
T cd00381         126 IKFIKKKYPNVDVI  139 (325)
T ss_pred             HHHHHHHCCCCCEE
T ss_conf             99999768997568


No 130
>PRK13115 consensus
Probab=77.06  E-value=6.6  Score=20.26  Aligned_cols=18  Identities=17%  Similarity=0.034  Sum_probs=11.9

Q ss_pred             HHHHHHHHCCCCEEEECC
Q ss_conf             997777754981678438
Q gi|254780812|r  190 EYLIAQIHAGVDVIQIFD  207 (346)
Q Consensus       190 ~yl~~Qi~aGad~iqIFD  207 (346)
                      +|++...++|+|.+-|-|
T Consensus       118 ~F~~~~~~~GvdGvIipD  135 (269)
T PRK13115        118 RFARDLAAAGGAGLITPD  135 (269)
T ss_pred             HHHHHHHHCCCCEEECCC
T ss_conf             999999973998076478


No 131
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=76.82  E-value=6.7  Score=20.21  Aligned_cols=69  Identities=20%  Similarity=0.216  Sum_probs=44.1

Q ss_pred             HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf             7777754981678438311006835677761272268999986308862360243110000134201478722304677
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWS  270 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~  270 (346)
                      .+...++|+|.|.+-+.-...          .....++++.++++..++++++-|...++.........|++.++++..
T Consensus        77 ~~~~~~~g~d~v~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~a~~~g~~~v~~~~~  145 (200)
T cd04722          77 AAAARAAGADGVEIHGAVGYL----------AREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNG  145 (200)
T ss_pred             HHHHHHCCCCEEEECCCCCCC----------CCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf             999998399989978999654----------300689999999844896499968999999999999809979997087


No 132
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=76.38  E-value=6.9  Score=20.13  Aligned_cols=52  Identities=13%  Similarity=0.078  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf             9999999777775498167843831100683567776127226899998630886236024
Q gi|254780812|r  185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF  245 (346)
Q Consensus       185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f  245 (346)
                      |+-+++.++.--++|||++++.=|.-.-.+.+.    ...|.++|.++.     +.|++.|
T Consensus        81 t~~~i~~a~~A~~~Gadai~v~pP~y~~~s~~~----l~~~~~~ia~a~-----~lPi~lY  132 (284)
T cd00950          81 TAEAIELTKRAEKAGADAALVVTPYYNKPSQEG----LYAHFKAIAEAT-----DLPVILY  132 (284)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHCC-----CCCEEEE
T ss_conf             999999999999839998996266578979999----999999997555-----9977987


No 133
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=76.36  E-value=6.9  Score=20.13  Aligned_cols=82  Identities=13%  Similarity=0.109  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC--CC--CCC---CCHHHHHC
Q ss_conf             999999777775498167843831100683567776127226899998630886236024--31--100---00134201
Q gi|254780812|r  186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF--AK--GAG---YMLKNYRR  258 (346)
Q Consensus       186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f--~~--g~~---~~l~~~~~  258 (346)
                      +.+++.++.--++|||++++.=+.-.-.+++..    ..|.++|.++.     +.|++.|  +.  |..   ..+..+.+
T Consensus        79 ~~~~~~a~~a~~~Gad~i~v~pP~y~~~~~~~i----~~~~~~i~~~~-----~~pi~iYn~P~~~g~~l~~~~l~~L~~  149 (281)
T cd00408          79 REAIELARHAEEAGADGVLVVPPYYNKPSQEGI----VAHFKAVADAS-----DLPVILYNIPGRTGVDLSPETIARLAE  149 (281)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHH----HHHHHHHHHCC-----CCCEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf             999999999997599989987997778999999----99999998555-----997799727753167768999999848


Q ss_pred             CCCCCEEECC-CCCCHHHHHH
Q ss_conf             4787223046-7799899997
Q gi|254780812|r  259 LTDSNAIGLD-WSVPLSFALE  278 (346)
Q Consensus       259 ~~g~d~isiD-~~~dl~~a~~  278 (346)
                      .  .+++++= ..-|+....+
T Consensus       150 ~--~nv~giK~s~~d~~~~~~  168 (281)
T cd00408         150 H--PNIVGIKDSSGDLDRLTR  168 (281)
T ss_pred             C--CCEEEEECCCCCHHHHHH
T ss_conf             9--998999848899999999


No 134
>PRK04180 pyridoxine biosynthesis protein; Provisional
Probab=76.33  E-value=6.8  Score=20.15  Aligned_cols=47  Identities=15%  Similarity=0.136  Sum_probs=26.8

Q ss_pred             HHHCCCHHHHHHHHHHHCCCCEEECCCCC--CCCCHHH-HHCCCCCCEEECCCC
Q ss_conf             76127226899998630886236024311--0000134-201478722304677
Q gi|254780812|r  220 NYAARSVGRIISAVRRKYPNAKFISFAKG--AGYMLKN-YRRLTDSNAIGLDWS  270 (346)
Q Consensus       220 ~f~~p~~kkI~~~ik~~~~~vpiI~f~~g--~~~~l~~-~~~~~g~d~isiD~~  270 (346)
                      ++..||  +++..+++.+ ..|+..|+-|  +++.--. |++ .|+|.+=+.+-
T Consensus       187 ~~~ap~--elv~~v~~~g-rLPVvnFaAGGiATPADAALmMq-LG~dGVFVGSG  236 (293)
T PRK04180        187 ELGAPY--ELVKEVARLG-RLPVVNFAAGGIATPADAALMMQ-LGADGVFVGSG  236 (293)
T ss_pred             HHCCCH--HHHHHHHHHC-CCCEEEECCCCCCCCHHHHHHHH-CCCCEEEECCC
T ss_conf             847768--9999999848-87625532577578056999987-17874675454


No 135
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=76.21  E-value=6.9  Score=20.10  Aligned_cols=12  Identities=33%  Similarity=0.512  Sum_probs=5.4

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             320111147999
Q gi|254780812|r  137 HITLIGFCGAPW  148 (346)
Q Consensus       137 ~~pLIGF~GgP~  148 (346)
                      ++|+|=|.|+|=
T Consensus        59 ~lPviLfPg~~~   70 (231)
T pfam01884        59 GLPIILFPGNPS   70 (231)
T ss_pred             CCCEEEECCCHH
T ss_conf             999899569867


No 136
>KOG2550 consensus
Probab=76.21  E-value=5.9  Score=20.57  Aligned_cols=67  Identities=22%  Similarity=0.308  Sum_probs=39.0

Q ss_pred             HHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf             9977777549816784383110068356777612722689999863088623602431100001342014787223046
Q gi|254780812|r  190 EYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLD  268 (346)
Q Consensus       190 ~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD  268 (346)
                      .-+...+++|+|+| |.||+-|.  ..        |.-+.+..+|+++|...+|.=.-=+...-+++.+ .|+|.+-+.
T Consensus       254 ~rl~ll~~aGvdvv-iLDSSqGn--S~--------~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~-aGaDgLrVG  320 (503)
T KOG2550         254 ERLDLLVQAGVDVV-ILDSSQGN--SI--------YQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIA-AGADGLRVG  320 (503)
T ss_pred             HHHHHHHHCCCCEE-EEECCCCC--CH--------HHHHHHHHHHHHCCCCEEECCCEEEHHHHHHHHH-CCCCEEEEC
T ss_conf             77888663488689-99668885--04--------5799999998668886343165533888999987-367605752


No 137
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695   Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis.   Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis.  .
Probab=76.11  E-value=2.4  Score=23.38  Aligned_cols=152  Identities=21%  Similarity=0.295  Sum_probs=75.9

Q ss_pred             HHHCCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHHH----
Q ss_conf             432443373168875222333335542056701234432378777876421024532011-----11479999999----
Q gi|254780812|r   82 DALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLI-----GFCGAPWTVAS----  152 (346)
Q Consensus        82 ealG~~v~f~~~~GP~~~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLI-----GF~GgP~Tlas----  152 (346)
                      |..|.+=-|..|-|  +-     ....=.||  .....|..|..-++.|-.-  .++|||     || |+||+++-    
T Consensus        30 e~aGF~A~YLSGaa--~a-----a~sLGlPD--LG~~tL~Eva~~~r~Itr~--~~LPlLVD~DTGF-Gea~nvaRTVre   97 (287)
T TIGR02317        30 ERAGFEAIYLSGAA--VA-----AGSLGLPD--LGITTLTEVAERARRITRV--TDLPLLVDADTGF-GEALNVARTVRE   97 (287)
T ss_pred             HHCCCCEEEEHHHH--HH-----HHHHCCCC--CCCCCHHHHHHHHHHHHHH--CCCCEEEEEECCC-CCHHHHHHHHHH
T ss_conf             86375566101687--74-----13206776--7667878999998877753--0487278633289-835449999999


Q ss_pred             --------HHHCCC--CCC-CHHHHHHHHCCCHHHHHHHHH---------------------HHHHHHHHHHHHHHHCCC
Q ss_conf             --------961246--776-524677530137222899999---------------------999999999777775498
Q gi|254780812|r  153 --------YMISGG--FIK-DHGQNRVFAYQNSRAFNWLLD---------------------FLSDVSAEYLIAQIHAGV  200 (346)
Q Consensus       153 --------YmieG~--~sk-~~~~~~~~~~~~p~~~~~ll~---------------------~lt~~~~~yl~~Qi~aGa  200 (346)
                              --||-.  +.| .++..|.+ .+..|-+.++--                     =-.|..|+=+++-|||||
T Consensus        98 me~AGaAa~HiEDQv~pKrCGHL~gK~l-v~~~eMv~kI~AAv~Ar~De~f~iiARTDA~AvEGld~AI~RA~aYvEAGA  176 (287)
T TIGR02317        98 MEDAGAAAVHIEDQVLPKRCGHLNGKEL-VSRDEMVRKIKAAVDARRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGA  176 (287)
T ss_pred             HHHHHHHHCCHHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf             9984454004677425442678988740-488779999999714789997277531023421365889999986787261


Q ss_pred             CEEEECCCCHHHC-CHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC----CCCCCCCCHHHHHCCCCCCE
Q ss_conf             1678438311006-8356777612722689999863088623602----43110000134201478722
Q gi|254780812|r  201 DVIQIFDTHAGCL-GEHEFENYAARSVGRIISAVRRKYPNAKFIS----FAKGAGYMLKNYRRLTDSNA  264 (346)
Q Consensus       201 d~iqIFDs~ag~L-s~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~----f~~g~~~~l~~~~~~~g~d~  264 (346)
                      |+|  |   +.-| +.++|++|+        +.|    |++|++=    |.|..-.-..++.+ .|++.
T Consensus       177 D~I--F---pEAL~~~~eFr~Fa--------~~v----k~vPLLANMTEFGKTPl~t~deL~~-~Gy~m  227 (287)
T TIGR02317       177 DMI--F---PEALESEEEFREFA--------KAV----KDVPLLANMTEFGKTPLYTADELRE-IGYKM  227 (287)
T ss_pred             CCC--H---HHHHHHHHHHHHHH--------HHC----CCCCEECCCCCCCCCCCCCHHHHHH-CCCEE
T ss_conf             531--3---87853288889999--------866----8984230112026764565798964-89448


No 138
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.09  E-value=6.7  Score=20.22  Aligned_cols=80  Identities=16%  Similarity=0.210  Sum_probs=34.6

Q ss_pred             CCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCC--CHHHHH
Q ss_conf             816784383110068356777612722689999863088623602431100001342014787223046779--989999
Q gi|254780812|r  200 VDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSV--PLSFAL  277 (346)
Q Consensus       200 ad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~--dl~~a~  277 (346)
                      -|.|+|||..-...+          -+.+.+..+++..|..+|..=+... .......+ .|+|++=+|+--  ++..+.
T Consensus       160 sd~iLiKdNHi~~~g----------~i~~~v~~~~~~~~~~kIeVEv~tl-~q~~~a~~-~gaDiI~LDnms~~~lk~av  227 (277)
T PRK05742        160 YDAFLIKENHIAACG----------GIAQAVAAAHRIAPGKPVEVEVESL-DELRQALA-AGADIVMLDELSLDDMREAV  227 (277)
T ss_pred             CCEEEEECCHHHHCC----------CHHHHHHHHHHHCCCCCEEEEECCH-HHHHHHHH-CCCCEEEECCCCHHHHHHHH
T ss_conf             635897454655506----------7999999999848997269996779-99999874-69989998699999999999


Q ss_pred             HH-CCCE--EEECCCCH
Q ss_conf             70-7984--69688884
Q gi|254780812|r  278 EL-QKEG--PVQGNLDP  291 (346)
Q Consensus       278 ~~-~~~~--~lqGNldP  291 (346)
                      ++ .++.  -..||+++
T Consensus       228 ~~~~~~~~iEaSGGI~~  244 (277)
T PRK05742        228 RLTAGRAKLEASGGINE  244 (277)
T ss_pred             HHHCCCEEEEEECCCCH
T ss_conf             97479748999889999


No 139
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=75.96  E-value=7  Score=20.06  Aligned_cols=18  Identities=17%  Similarity=0.289  Sum_probs=14.7

Q ss_pred             CCCCCHHHHHHHHHHHHH
Q ss_conf             336688999999999973
Q gi|254780812|r  326 TPQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       326 ~p~tp~eNv~~~v~~vr~  343 (346)
                      .-..+++.|+.|+++||.
T Consensus       237 ~n~VD~~RV~~fm~~vr~  254 (254)
T pfam03437       237 NNEVDIERVSKIAELAKH  254 (254)
T ss_pred             CCCCCHHHHHHHHHHHCC
T ss_conf             897799999999998419


No 140
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=75.78  E-value=7.1  Score=20.03  Aligned_cols=91  Identities=14%  Similarity=0.062  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC-CC---CCHHHHHCCCCCC
Q ss_conf             9999777775498167843831100683567776127226899998630886236024311-00---0013420147872
Q gi|254780812|r  188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG-AG---YMLKNYRRLTDSN  263 (346)
Q Consensus       188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g-~~---~~l~~~~~~~g~d  263 (346)
                      .++.++.--++|||++++.-|+--..+++.    ...|.++|.++.     +.|++.|-+. ..   ..+..+.+. -.+
T Consensus        88 ai~la~~a~~~Gad~v~v~pPyy~~~~~~~----l~~~f~~ia~a~-----~~pi~lYn~~~~~~~~~~l~~L~~~-~p~  157 (296)
T TIGR03249        88 AIEIARLAEKAGADGYLLLPPYLINGEQEG----LYAHVEAVCEST-----DLGVIVYQRDNAVLNADTLERLADR-CPN  157 (296)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHHC-----CCCEEEECCCCCCCCHHHHHHHHHC-CCC
T ss_conf             999999998759997897799889999999----999999999715-----9977873077878799999999815-798


Q ss_pred             EEECCCC-CCHHHHHH----HCCCEEEECC
Q ss_conf             2304677-99899997----0798469688
Q gi|254780812|r  264 AIGLDWS-VPLSFALE----LQKEGPVQGN  288 (346)
Q Consensus       264 ~isiD~~-~dl~~a~~----~~~~~~lqGN  288 (346)
                      ++++=+. -|+....+    .+++..+.+.
T Consensus       158 i~giK~s~~d~~~~~~~~~~~~~~~~~~~g  187 (296)
T TIGR03249       158 LVGFKDGIGDMEQMIEITQRLGDRLGYLGG  187 (296)
T ss_pred             EEEEEECCCCHHHHHHHHHHCCCCCEEEEC
T ss_conf             799997766899999999973997279738


No 141
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=75.68  E-value=7.1  Score=20.01  Aligned_cols=85  Identities=24%  Similarity=0.253  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf             99997777754981678438311006835677761272268999986308862360243110000134201478722304
Q gi|254780812|r  188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGL  267 (346)
Q Consensus       188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isi  267 (346)
                      ..+-+.+-+++|+++||+-|-.   .+...+.+.+    +++-+-+++.  ++|.|.--      -.+++-..++|++++
T Consensus       157 l~~~Ve~AL~gGv~ivQlR~K~---~~~~~~l~~A----~~l~~Lc~~y--~a~fIIND------rvDlAlav~ADGVHL  221 (345)
T PRK02615        157 LLEVVEAALKAGVKLVQYRDKT---GDDRERLEEA----KQLKELCKRY--GALFIVND------RVDIALAVDADGVHL  221 (345)
T ss_pred             HHHHHHHHHHCCCCEEEEECCC---CCHHHHHHHH----HHHHHHHHHH--CCEEEEEC------CHHHHHHCCCCEEEE
T ss_conf             9999999997599889830589---9999999999----9999999995--99489819------699999749987755


Q ss_pred             CCC-CCHHHHHHHCCCEEEEC
Q ss_conf             677-99899997079846968
Q gi|254780812|r  268 DWS-VPLSFALELQKEGPVQG  287 (346)
Q Consensus       268 D~~-~dl~~a~~~~~~~~lqG  287 (346)
                      +.. +++..+|++.+.-.|.|
T Consensus       222 GQ~Dlpi~~aR~llG~~~iIG  242 (345)
T PRK02615        222 GQEDLPLAVARQLLGPEKIIG  242 (345)
T ss_pred             CCCCCCHHHHHHHCCCCCEEE
T ss_conf             888789999998739991899


No 142
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=75.38  E-value=2.3  Score=23.51  Aligned_cols=169  Identities=18%  Similarity=0.252  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CCEEEEC-
Q ss_conf             1147999999996124677652467753013722289999999999999977777549--------------8167843-
Q gi|254780812|r  142 GFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG--------------VDVIQIF-  206 (346)
Q Consensus       142 GF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG--------------ad~iqIF-  206 (346)
                      |-+|==.|||.-         -..+..|....-=.++.||.-...+ -.|++.=-|.+              .+++-|= 
T Consensus      1175 G~vGIIl~LAM~---------I~sTlQWAV~sSI~VDgLMRSV~RV-FKfID~P~E~~~~~~~~~~~k~g~~s~~lvI~N 1244 (1534)
T TIGR01271      1175 GEVGIILTLAMN---------ILSTLQWAVNSSIDVDGLMRSVSRV-FKFIDLPQEESKPSKSGKKYKNGQLSKVLVIEN 1244 (1534)
T ss_pred             CEEEHHHHHHHH---------HHHHHHHHHHCCEECCHHHHEEEHH-EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             302035788999---------9888877875000001122100020-233336788886777766544677774577607


Q ss_pred             ------CCC--HHHCCHHHHHHHHCCCHH---HHHHHHH-HHCCCCEEECCCC---CCCCCHHHHHCCCC------CCEE
Q ss_conf             ------831--100683567776127226---8999986-3088623602431---10000134201478------7223
Q gi|254780812|r  207 ------DTH--AGCLGEHEFENYAARSVG---RIISAVR-RKYPNAKFISFAK---GAGYMLKNYRRLTD------SNAI  265 (346)
Q Consensus       207 ------Ds~--ag~Ls~~~f~~f~~p~~k---kI~~~ik-~~~~~vpiI~f~~---g~~~~l~~~~~~~g------~d~i  265 (346)
                            |-|  .|...-+.   .-.+|+.   -+.+.+- .-.+|-.+....|   |.+.++..+.++..      +|++
T Consensus      1245 ~H~~~dd~WP~~G~M~V~~---LT~KYT~~G~avL~dlSFsv~~GQ~VGlLGRTGsGKSTLLSAlLRL~~T~GEI~IDGv 1321 (1534)
T TIGR01271      1245 KHVKKDDIWPSGGQMDVKD---LTAKYTEAGRAVLQDLSFSVEAGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGV 1321 (1534)
T ss_pred             CCCCCCCCCCCCCEEEECC---CEEEECCCCHHHHHHCCEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEECCE
T ss_conf             7676467799988567525---4023210205556413414438835775302687678999999996077981676233


Q ss_pred             ECCCCCCHHHHHH---HCC-CE-EEEC----CCCHHHHCCCHHH--HHHHH--HHHHHHHCC--------CCCEEEECCC
Q ss_conf             0467799899997---079-84-6968----8884677099889--99999--999997325--------9928960897
Q gi|254780812|r  266 GLDWSVPLSFALE---LQK-EG-PVQG----NLDPMRLVVGNQV--MIDGV--NAILDVLGS--------GPFIFNLGHG  324 (346)
Q Consensus       266 siD~~~dl~~a~~---~~~-~~-~lqG----NldP~~L~~~~e~--i~~~~--~~~l~~~~~--------~~~I~nLGhG  324 (346)
                      |=| .+.|...|+   +-| ++ ++.|    ||||..=+.+.|-  |.+||  +.+++++-+        +|||+|-||-
T Consensus      1322 SW~-SvtLQ~WRKAFGViPQKvFi~sGTFR~NLDPy~~~SD~E~WkVaeEVGLkSvIEQFPdKLdF~L~DGGyvLS~GHK 1400 (1534)
T TIGR01271      1322 SWN-SVTLQKWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1400 (1534)
T ss_pred             EEC-CCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCEEEECCCEEEECCHH
T ss_conf             505-2122003444131563478831551136881342260356666543154311000888412488628678316416


No 143
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit; InterPro: IPR004430   3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus .    Members of this entry are 3-isopropylmalate dehydratase, large subunit, or the large subunit domain of single-chain forms. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures. All are dehydratases (4.2.1 from EC) and bind a [4Fe-4S]-cluster. 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The archaeal leuC-like proteins are not included in group.; GO: 0003861 3-isopropylmalate dehydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex.
Probab=74.87  E-value=1.7  Score=24.35  Aligned_cols=92  Identities=20%  Similarity=0.228  Sum_probs=53.8

Q ss_pred             HHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC-----CCHHHHHCCCCCCEE
Q ss_conf             977777549816784383110068356777612722689999863088623602431100-----001342014787223
Q gi|254780812|r  191 YLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG-----YMLKNYRRLTDSNAI  265 (346)
Q Consensus       191 yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~-----~~l~~~~~~~g~d~i  265 (346)
                      -+++-||+||-        ||++.|++          --++++|.+      -|=|||..     ..++.+.-.   +.-
T Consensus       225 ~CNMaIE~GAr--------AGliaPDE----------tTF~Y~K~R------~~aPKG~ef~~AVayWKtL~tD---~gA  277 (472)
T TIGR00170       225 VCNMAIEAGAR--------AGLIAPDE----------TTFEYVKGR------PHAPKGKEFDKAVAYWKTLKTD---EGA  277 (472)
T ss_pred             HHHHHHHHHHH--------CCCCCCCC----------HHHHHCCCC------CCCCCCCCHHHHHHHHHHCCCC---CCC
T ss_conf             44577886322--------27628840----------246620768------8888877678999987533698---887


Q ss_pred             ECCCCCCHHHHHHH--------CC--CEEEECCC-CHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             04677998999970--------79--84696888-84677099889999999999973
Q gi|254780812|r  266 GLDWSVPLSFALEL--------QK--EGPVQGNL-DPMRLVVGNQVMIDGVNAILDVL  312 (346)
Q Consensus       266 siD~~~dl~~a~~~--------~~--~~~lqGNl-dP~~L~~~~e~i~~~~~~~l~~~  312 (346)
                      .+|..+.|+ |.++        +|  =+++.+++ ||..+-.+-+  +++..+-|.-+
T Consensus       278 ~fD~~i~l~-a~~i~P~vTWGtnPg~vl~v~~~vP~P~~~~dp~~--k~~aerAl~Ym  332 (472)
T TIGR00170       278 KFDTVITLE-AEDISPQVTWGTNPGQVLPVNEEVPDPKSFADPVK--KASAERALAYM  332 (472)
T ss_pred             CCCCEEEEC-CEEECCEEECCCCCCCEEECCCCCCCCCCCCCHHH--HHHHHHHHHHH
T ss_conf             236368852-51315546537899826733788877512378445--77899999970


No 144
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=74.79  E-value=7.5  Score=19.86  Aligned_cols=91  Identities=15%  Similarity=0.122  Sum_probs=40.4

Q ss_pred             HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC----CCHHHHHCCCCCCE
Q ss_conf             99977777549816784383110068356777612722689999863088623602431100----00134201478722
Q gi|254780812|r  189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG----YMLKNYRRLTDSNA  264 (346)
Q Consensus       189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~----~~l~~~~~~~g~d~  264 (346)
                      ++.++.--+.|||++++.=++--..+.+.    +..|.++|.++.     +.|++.|.+...    ..+..+.+. -.++
T Consensus        84 i~la~~a~~~Gadav~v~pPy~~~~~~~~----l~~~~~~ia~a~-----~lpi~lYn~~~~~~~~~~l~~L~~~-~p~i  153 (289)
T cd00951          84 IAYAQAAEKAGADGILLLPPYLTEAPQEG----LYAHVEAVCKST-----DLGVIVYNRANAVLTADSLARLAER-CPNL  153 (289)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHHC-----CCCEEECCCCCCCCCHHHHHHHHHH-CCCE
T ss_conf             99999999759999997698888999999----999999999846-----9986614887767789999999983-6878


Q ss_pred             EECCCC-CCHHHHHH----HCCCEEEECCC
Q ss_conf             304677-99899997----07984696888
Q gi|254780812|r  265 IGLDWS-VPLSFALE----LQKEGPVQGNL  289 (346)
Q Consensus       265 isiD~~-~dl~~a~~----~~~~~~lqGNl  289 (346)
                      +++=+. -|+....+    .+++..+.|++
T Consensus       154 ~giK~s~~d~~~~~~~~~~~~~~~~~~~g~  183 (289)
T cd00951         154 VGFKDGVGDIELMRRIVAKLGDRLLYLGGL  183 (289)
T ss_pred             EEEEECCCCHHHHHHHHHHCCCCCEEEECC
T ss_conf             999978889999999999759982898589


No 145
>PRK13139 consensus
Probab=74.45  E-value=7.7  Score=19.80  Aligned_cols=62  Identities=16%  Similarity=0.289  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA  198 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a  198 (346)
                      .+..+++-++.+|++.  ++|++        +++|.                  ||     ++..   -.-+|++..-++
T Consensus        76 ~~~~~~~~~~~~~~~~--~~piv--------lM~Y~------------------N~-----i~~~---G~e~F~~~~~~~  119 (254)
T PRK13139         76 KVRECFDFAREVVAAF--NIPFL--------FMTYY------------------NI-----LFKY---GVERFIDEVADI  119 (254)
T ss_pred             CHHHHHHHHHHHHHCC--CCCEE--------EEEEH------------------HH-----HHHC---CHHHHHHHHHHC
T ss_conf             7999999999997248--97689--------99525------------------99-----9870---999999999975


Q ss_pred             CCCEEEECCCCHHHCCHHHHHHH
Q ss_conf             98167843831100683567776
Q gi|254780812|r  199 GVDVIQIFDTHAGCLGEHEFENY  221 (346)
Q Consensus       199 Gad~iqIFDs~ag~Ls~~~f~~f  221 (346)
                      |+|.+-|-|     |++++-.+|
T Consensus       120 Gv~GvIipD-----LP~eE~~~~  137 (254)
T PRK13139        120 GVKGLIVPD-----LPPEQAQDY  137 (254)
T ss_pred             CCCEEECCC-----CCHHHHHHH
T ss_conf             998586479-----997889999


No 146
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVA cPLA2, an 85 kDa protein, consists of two domains: the regulatory C2 domain and the alpha/beta hydrolase PLA2 domain. Group IVA cPLA2 is also referred to as cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (cPLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile
Probab=74.36  E-value=7.7  Score=19.78  Aligned_cols=17  Identities=41%  Similarity=0.530  Sum_probs=10.0

Q ss_pred             HHHCCCCEEEECCCCHH
Q ss_conf             77549816784383110
Q gi|254780812|r  195 QIHAGVDVIQIFDTHAG  211 (346)
Q Consensus       195 Qi~aGad~iqIFDs~ag  211 (346)
                      |=+-.+|+|--||-+|+
T Consensus       341 rP~R~VDvIisfD~Sa~  357 (505)
T cd07200         341 RPQRGVDLIISFDFSAR  357 (505)
T ss_pred             CCCCCCCEEEEEECCCC
T ss_conf             88976677999757898


No 147
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=74.28  E-value=7.7  Score=19.77  Aligned_cols=74  Identities=18%  Similarity=0.289  Sum_probs=35.0

Q ss_pred             HHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf             99777775498167843831100683567776127226899998630886236024311000013420147872230467
Q gi|254780812|r  190 EYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDW  269 (346)
Q Consensus       190 ~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~  269 (346)
                      ..+..-+++|++++|+-|-.   .+.+.+.    .-.+++.+-.++.  ++|+|..  +    -.++....++|.+++..
T Consensus        25 ~~ve~al~~Gv~~vQlR~K~---~~~~~~~----~~a~~~~~lc~~~--~v~liIN--d----~~dlA~~~~AdGVHlGq   89 (211)
T COG0352          25 EWVEAALKGGVTAVQLREKD---LSDEEYL----ALAEKLRALCQKY--GVPLIIN--D----RVDLALAVGADGVHLGQ   89 (211)
T ss_pred             HHHHHHHHCCCEEEEEECCC---CCHHHHH----HHHHHHHHHHHHH--CCEEEEC--C----CHHHHHHCCCCEEEECC
T ss_conf             99999996799499980289---8749999----9999999999981--9809966--8----39999767998897087


Q ss_pred             C-CCHHHHHH
Q ss_conf             7-99899997
Q gi|254780812|r  270 S-VPLSFALE  278 (346)
Q Consensus       270 ~-~dl~~a~~  278 (346)
                      . .++..+++
T Consensus        90 ~D~~~~~ar~   99 (211)
T COG0352          90 DDMPLAEARE   99 (211)
T ss_pred             CCCCHHHHHH
T ss_conf             6545588997


No 148
>pfam05913 DUF871 Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.
Probab=74.09  E-value=7.8  Score=19.74  Aligned_cols=15  Identities=27%  Similarity=0.095  Sum_probs=10.5

Q ss_pred             CCCCEEEECCCCHHH
Q ss_conf             498167843831100
Q gi|254780812|r  198 AGVDVIQIFDTHAGC  212 (346)
Q Consensus       198 aGad~iqIFDs~ag~  212 (346)
                      .++|.|.|-|+.++.
T Consensus       211 ~~iD~V~IGD~~~s~  225 (357)
T pfam05913       211 GLIDDVLIGDAYASE  225 (357)
T ss_pred             CCCCEEEECCCCCCH
T ss_conf             898979986999999


No 149
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=74.09  E-value=7.8  Score=19.74  Aligned_cols=80  Identities=16%  Similarity=0.144  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC--CC--CCC---CCHHHHH
Q ss_conf             9999999777775498167843831100683567776127226899998630886236024--31--100---0013420
Q gi|254780812|r  185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF--AK--GAG---YMLKNYR  257 (346)
Q Consensus       185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f--~~--g~~---~~l~~~~  257 (346)
                      |+.+++.++.-.++|||++++.=+.-...+.+.    ...|.+.|.++.     +.|+++|  +.  |..   ..+..+.
T Consensus        85 t~~ai~~a~~a~~~Gad~v~~~pP~y~~~~~~~----i~~~f~~va~a~-----~~pi~iYn~P~~tg~~~~~~~l~~L~  155 (294)
T PRK04147         85 TAEAQELAKYATELGYDAISAVTPFYYPFSFEE----ICDYYREIIDSA-----DNPMIVYNIPALTGVNLSLDQFNELF  155 (294)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHHC-----CCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf             899999999999759988997278677899899----999999998504-----99778875675416788999999995


Q ss_pred             CCCCCCEEECC-CCCCHHH
Q ss_conf             14787223046-7799899
Q gi|254780812|r  258 RLTDSNAIGLD-WSVPLSF  275 (346)
Q Consensus       258 ~~~g~d~isiD-~~~dl~~  275 (346)
                      +.  .+++++= ...|+..
T Consensus       156 ~~--~~i~giK~s~~d~~~  172 (294)
T PRK04147        156 TL--PKIIGVKQTAGDLYQ  172 (294)
T ss_pred             CC--CCEEEEEECCCCHHH
T ss_conf             68--998899928899999


No 150
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210   This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=73.62  E-value=8  Score=19.66  Aligned_cols=131  Identities=11%  Similarity=0.206  Sum_probs=80.5

Q ss_pred             HHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEE--ECCCCCCCCC--HH--------HHHCCCCCC
Q ss_conf             75498167843831100683567776127226899998630886236--0243110000--13--------420147872
Q gi|254780812|r  196 IHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKF--ISFAKGAGYM--LK--------NYRRLTDSN  263 (346)
Q Consensus       196 i~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpi--I~f~~g~~~~--l~--------~~~~~~g~d  263 (346)
                      |..|||+|.|==--++-=.+++|++..     +|.+-. +.+ |+|+  +-|+||..=.  ..        .+....|+|
T Consensus       100 i~~GADAVS~HvNvGs~~e~d~~~~lg-----~vA~~a-d~~-GvPlLAMmYaRG~~i~~e~d~~~v~HAaRlg~ElGAD  172 (259)
T TIGR01949       100 IRLGADAVSIHVNVGSDTEADQIEDLG-----DVAEIA-DDW-GVPLLAMMYARGPRIDDEVDPEVVAHAARLGEELGAD  172 (259)
T ss_pred             HHCCCCEEEEEEECCCCCCHHHHHHHH-----HHHHHH-HHC-CCCHHECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             732898679988648987389999998-----999988-654-8842011278868876644767888887653534577


Q ss_pred             EEECCCCCCHHHHHHH----CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCC----CCCEEEECCCCCCCCCHHHHH
Q ss_conf             2304677998999970----79846968888467709988999999999997325----992896089763366889999
Q gi|254780812|r  264 AIGLDWSVPLSFALEL----QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGS----GPFIFNLGHGITPQVDPKNVL  335 (346)
Q Consensus       264 ~isiD~~~dl~~a~~~----~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~----~~~I~nLGhGi~p~tp~eNv~  335 (346)
                      ++=+-|.=|++-..+.    ...+++-|. +|   +.+.+++.+-++.-++++..    +.-||+  |    ++|..=.+
T Consensus       173 vvK~~Y~Gd~~SF~~VV~~c~~PVvvAGG-~k---~~s~~efLq~v~DA~~aGAAGvs~GRnvFq--h----~~p~~~~~  242 (259)
T TIGR01949       173 VVKVPYTGDIDSFEEVVKACAVPVVVAGG-PK---LASDREFLQMVKDAMEAGAAGVSVGRNVFQ--H----DTPVAITK  242 (259)
T ss_pred             EEEECCCCCHHHHHHHHCCCCCCEEEECC-CC---CCCCHHHHHHHHHHHHHCCCCEECCCCCCC--C----CCHHHHHH
T ss_conf             66514317746799996217877787377-79---887467778899999818782310563014--6----88789999


Q ss_pred             HHHHHHHH
Q ss_conf             99999973
Q gi|254780812|r  336 DLVKTVRS  343 (346)
Q Consensus       336 ~~v~~vr~  343 (346)
                      |+-.-||+
T Consensus       243 Av~~iVH~  250 (259)
T TIGR01949       243 AVSAIVHE  250 (259)
T ss_pred             HHHHHCCC
T ss_conf             99873469


No 151
>TIGR00067 glut_race glutamate racemase; InterPro: IPR004391 Glutamate racemase (5.1.1.3 from EC) provides the (R)-glutamic acid required for cell wall biosynthesis. It converts L-glutamate to D-glutamate during peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases.; GO: 0008881 glutamate racemase activity, 0009252 peptidoglycan biosynthetic process.
Probab=73.61  E-value=2.8  Score=22.91  Aligned_cols=26  Identities=15%  Similarity=0.126  Sum_probs=19.0

Q ss_pred             HHHHHHHHCCCHHHHHHHHH--HHCCCC
Q ss_conf             35677761272268999986--308862
Q gi|254780812|r  215 EHEFENYAARSVGRIISAVR--RKYPNA  240 (346)
Q Consensus       215 ~~~f~~f~~p~~kkI~~~ik--~~~~~v  240 (346)
                      .+..+++++.++|.+...+.  +..+++
T Consensus       154 ~~~~~~~~~~~lk~~l~pl~~l~~~~d~  181 (262)
T TIGR00067       154 GEFEEDYALECLKAYLSPLLRLDTQIDT  181 (262)
T ss_pred             HCCCHHHHHHHHHHHCCCHHHHCCCCCE
T ss_conf             0244158999999860526774289987


No 152
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=73.60  E-value=4.9  Score=21.15  Aligned_cols=15  Identities=20%  Similarity=0.333  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             889999999999973
Q gi|254780812|r  298 NQVMIDGVNAILDVL  312 (346)
Q Consensus       298 ~e~i~~~~~~~l~~~  312 (346)
                      .+.+.+++.+-|+..
T Consensus       214 ~~~F~~~y~~~l~~~  228 (252)
T PRK01683        214 QQAFLTRYHQMLDEA  228 (252)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999986


No 153
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=73.58  E-value=5  Score=21.11  Aligned_cols=25  Identities=16%  Similarity=0.110  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHCCCC-CCHHHHHH
Q ss_conf             23787778764210245-32011114
Q gi|254780812|r  120 LLPIFQSISILRKKLPN-HITLIGFC  144 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~-~~pLIGF~  144 (346)
                      +.++.+.++.+++.++. .+|+|..+
T Consensus        73 ~~~~~~~l~~~~~~~~~~~~pvi~si   98 (294)
T cd04741          73 LDYYLEYIRTISDGLPGSAKPFFISV   98 (294)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf             89999999998654655587089989


No 154
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=73.43  E-value=2.9  Score=22.79  Aligned_cols=121  Identities=16%  Similarity=0.240  Sum_probs=65.4

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             30137222899999999999999777775498167843-83110068356777612722689999863088623602431
Q gi|254780812|r  169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK  247 (346)
Q Consensus       169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~  247 (346)
                      -++.+|+.+.++.+.              .|+|++.+. -+.-|.-.++      -.-.-++++.+++.. ++|+..|. 
T Consensus       152 ~~~T~peea~~Fv~~--------------TgvD~LAvaiGn~HG~y~~~------p~l~~~~L~~I~~~~-~iPLVLHG-  209 (286)
T PRK12738        152 AFLTDPQEAKRFVEL--------------TGVDSLAVAIGTAHGLYSKT------PKIDFQRLAEIREVV-DVPLVLHG-  209 (286)
T ss_pred             CCCCCHHHHHHHHHH--------------HCCCEEHHHHCCCCCCCCCC------CCCCHHHHHHHHHCC-CCCEEEEC-
T ss_conf             357999999999998--------------79781223323546777999------947899999997307-99989769-


Q ss_pred             CCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HH-H--CCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             100001342014--78722304677998999---97-0--7984696888846770-998899999999999732599
Q gi|254780812|r  248 GAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LE-L--QKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       248 g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~-~--~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~  316 (346)
                      |++..-+++.+.  .|+.=++++......+.   |+ +  .++     ..||..++ ...+.+++.+++.++.+++.+
T Consensus       210 gSG~~~e~i~~ai~~Gi~KvNi~T~l~~a~~~~~r~~l~~~p~-----~~dp~~~l~~~~~a~~~~v~~ki~~~GS~g  282 (286)
T PRK12738        210 ASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQ-----GNDPRYYMRVGMDAMKEVVRNKINVCGSAN  282 (286)
T ss_pred             CCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999769069984858999999999999986978-----688699999999999999999999849988


No 155
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=73.39  E-value=8.1  Score=19.63  Aligned_cols=125  Identities=11%  Similarity=0.174  Sum_probs=67.0

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC-CCHHHCCHHHHHHHHCCCH-HHHHHHHHHHCCCCEEECCC
Q ss_conf             301372228999999999999997777754981678438-3110068356777612722-68999986308862360243
Q gi|254780812|r  169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFD-THAGCLGEHEFENYAARSV-GRIISAVRRKYPNAKFISFA  246 (346)
Q Consensus       169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFD-s~ag~Ls~~~f~~f~~p~~-kkI~~~ik~~~~~vpiI~f~  246 (346)
                      .+|.+|+.+.++.              -+.|+|++.+.= +.-|.-..       .|-+ -+.++++++.. ++|+..|.
T Consensus       153 ~~~T~peea~~Fv--------------~~TgvD~LAvaiGt~HG~yk~-------~p~l~~~~L~~I~~~~-~vPLVLHG  210 (286)
T PRK08610        153 IIYADPKECQELV--------------EKTGIDALAPALGSVHGPYKG-------EPKLGFKEMEEIGLST-GLPLVLHG  210 (286)
T ss_pred             CCCCCHHHHHHHH--------------HHHCCCEEEEECCCCCCCCCC-------CCCCCHHHHHHHHHHC-CCCEEEEC
T ss_conf             3037999999999--------------973986673111554465589-------9877899999998524-99979658


Q ss_pred             CCCCCCHHHHHCC--CCCCEEECCCCCCHHHHHHHCCCEEE-ECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             1100001342014--78722304677998999970798469-6888846770-998899999999999732599
Q gi|254780812|r  247 KGAGYMLKNYRRL--TDSNAIGLDWSVPLSFALELQKEGPV-QGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       247 ~g~~~~l~~~~~~--~g~d~isiD~~~dl~~a~~~~~~~~l-qGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~  316 (346)
                       |++..-+++.+.  .|+.=++++......+.+.+.....- ....||..++ ...+.+++.+++.++.++..+
T Consensus       211 -gSGi~~e~i~~ai~~Gi~KvNi~T~l~~a~~~~~r~~l~~~p~~~dp~~~~~~~~~a~~~~V~~ki~~fGS~g  283 (286)
T PRK08610        211 -GTGIPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTSN  283 (286)
T ss_pred             -CCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             -9999999999999859848996718899999999999985977578799999999999999999999838866


No 156
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=73.11  E-value=8.2  Score=19.58  Aligned_cols=73  Identities=16%  Similarity=0.231  Sum_probs=31.7

Q ss_pred             HHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf             97777754981678438311006835677761272268999986308862360243110000134201478722304677
Q gi|254780812|r  191 YLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWS  270 (346)
Q Consensus       191 yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~  270 (346)
                      .++.-+++|++.||+-+..   ++.+.|.+.+    +++.+.+++.  ++++|...     . .++....++|++++...
T Consensus        17 ~l~~~l~~gv~~iqlR~k~---~~~~~~~~~a----~~~~~~~~~~--~~~liInd-----~-~~lA~~~~~dGvHl~~~   81 (196)
T cd00564          17 VVEAALKGGVTLVQLREKD---LSARELLELA----RALRELCRKY--GVPLIIND-----R-VDLALAVGADGVHLGQD   81 (196)
T ss_pred             HHHHHHHCCCCEEEECCCC---CCHHHHHHHH----HHHHHHHHHH--CCEEEECC-----H-HHHHHHHCCCEEECCCC
T ss_conf             9999998599999986799---8999999999----9999999980--99799788-----6-99999739987955846


Q ss_pred             -CCHHHHHH
Q ss_conf             -99899997
Q gi|254780812|r  271 -VPLSFALE  278 (346)
Q Consensus       271 -~dl~~a~~  278 (346)
                       .++..+|+
T Consensus        82 d~~~~~~r~   90 (196)
T cd00564          82 DLPVAEARA   90 (196)
T ss_pred             CCCHHHHHH
T ss_conf             689999998


No 157
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=72.42  E-value=4  Score=21.77  Aligned_cols=126  Identities=15%  Similarity=0.240  Sum_probs=66.8

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCC-HHHHHHHHHHHCCCCEEECCC
Q ss_conf             30137222899999999999999777775498167843-8311006835677761272-268999986308862360243
Q gi|254780812|r  169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARS-VGRIISAVRRKYPNAKFISFA  246 (346)
Q Consensus       169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~-~kkI~~~ik~~~~~vpiI~f~  246 (346)
                      -+|.+|+.+.++.+.              .|+|++.+- -+.-|.-..      ..|- .-++++++++.. ++|+..|.
T Consensus       150 ~~~T~peea~~Fv~~--------------TgvD~LAvaiG~~HG~yk~------~~p~L~~~~L~~I~~~~-~iPLVlHG  208 (283)
T pfam01116       150 ALYTDPEEAKEFVER--------------TGVDSLAVAIGNVHGVYKP------LEPKLDFDRLKEIQAAV-DVPLVLHG  208 (283)
T ss_pred             CCCCCHHHHHHHHHH--------------HCCCEEEEECCCCCCCCCC------CCCCCCHHHHHHHHHHC-CCCEEEEC
T ss_conf             225899999999998--------------6988787643653444689------99866999999999873-99878658


Q ss_pred             CCCCCCHHHHHCC--CCCCEEECCCCCCHHHHHHHCCCEE-EECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             1100001342014--7872230467799899997079846-96888846770-998899999999999732599
Q gi|254780812|r  247 KGAGYMLKNYRRL--TDSNAIGLDWSVPLSFALELQKEGP-VQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       247 ~g~~~~l~~~~~~--~g~d~isiD~~~dl~~a~~~~~~~~-lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~  316 (346)
                       |++..-+++.+.  .|+.=+.++......+...+..... =-++.||..++ ...+.+++.+++.++.++..+
T Consensus       209 -gSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~r~~l~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~fGs~g  281 (283)
T pfam01116       209 -GSGVPDEEIRKAIKLGVAKINIDTDLQWAFTKAVREYLAENPGNYDPRKYLRPAREAMKEVVKEKIRLFGSAG  281 (283)
T ss_pred             -CCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             -9999999999999839669985759999999999999986978689899999999999999999999968898


No 158
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH).  DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS.  Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.  Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate.  These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=72.21  E-value=8.6  Score=19.44  Aligned_cols=144  Identities=13%  Similarity=0.120  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEEC-CCC---HHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCC
Q ss_conf             999999777775498167843-831---1006835677761272268999986308862360243110000134201478
Q gi|254780812|r  186 DVSAEYLIAQIHAGVDVIQIF-DTH---AGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTD  261 (346)
Q Consensus       186 ~~~~~yl~~Qi~aGad~iqIF-Ds~---ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g  261 (346)
                      +...+++..+++.|||+|-|- +|.   +..+|++.=.+-..|.++.|.    +. +++|+..=+.... -.+.-.+ .|
T Consensus        24 ~~a~~~a~~~i~~GAdiIDIG~eSTrPg~~~i~~~eE~~Rl~pvl~~i~----~~-~~v~iSIDT~~~~-Va~~al~-~G   96 (258)
T cd00423          24 DKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALA----GE-PDVPISVDTFNAE-VAEAALK-AG   96 (258)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH----CC-CCCEEEEECCCHH-HHHHHHH-CC
T ss_conf             9999999999987999999798778999974777888888500568874----27-9960999798889-9999998-59


Q ss_pred             CCEEE-CCCC---CC-HHHHHHHCCCEEEECCC-CHHHHC-----CC-HHHHHHHHHHHHHHHCC-----CCCEEEECCC
Q ss_conf             72230-4677---99-89999707984696888-846770-----99-88999999999997325-----9928960897
Q gi|254780812|r  262 SNAIG-LDWS---VP-LSFALELQKEGPVQGNL-DPMRLV-----VG-NQVMIDGVNAILDVLGS-----GPFIFNLGHG  324 (346)
Q Consensus       262 ~d~is-iD~~---~d-l~~a~~~~~~~~lqGNl-dP~~L~-----~~-~e~i~~~~~~~l~~~~~-----~~~I~nLGhG  324 (346)
                      ++.|. +...   -. ++.+.+.+-.++++=+- .|..+.     .+ -+++.+..++-++.+..     ..-|+-.|-|
T Consensus        97 ~~iINDVsg~~~d~~m~~~va~~~~~~ilmH~~~~p~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~Gi~~~~IiiDPGiG  176 (258)
T cd00423          97 ADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIG  176 (258)
T ss_pred             CCEEECCHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCC
T ss_conf             98682400310655799999974998898305788655666898664899999999999999998699930088747767


Q ss_pred             CCCCCCHHHHHHH
Q ss_conf             6336688999999
Q gi|254780812|r  325 ITPQVDPKNVLDL  337 (346)
Q Consensus       325 i~p~tp~eNv~~~  337 (346)
                      .. .|+.+|...+
T Consensus       177 Fg-K~~~~n~~ll  188 (258)
T cd00423         177 FG-KTEEHNLELL  188 (258)
T ss_pred             CC-CCHHHHHHHH
T ss_conf             78-8878899999


No 159
>PRK13132 consensus
Probab=71.99  E-value=8.7  Score=19.41  Aligned_cols=17  Identities=12%  Similarity=0.258  Sum_probs=11.3

Q ss_pred             HHHHHHHCCCCEEEECC
Q ss_conf             97777754981678438
Q gi|254780812|r  191 YLIAQIHAGVDVIQIFD  207 (346)
Q Consensus       191 yl~~Qi~aGad~iqIFD  207 (346)
                      |++...++|+|.+-|-|
T Consensus       105 F~~~~~~~GvdGlIipD  121 (246)
T PRK13132        105 FVKKAKELGISGLIVPD  121 (246)
T ss_pred             HHHHHHHCCCCEEECCC
T ss_conf             99999876998577579


No 160
>PRK08508 biotin synthase; Provisional
Probab=71.73  E-value=8.8  Score=19.37  Aligned_cols=16  Identities=19%  Similarity=0.382  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHCCC
Q ss_conf             2378777876421024
Q gi|254780812|r  120 LLPIFQSISILRKKLP  135 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~  135 (346)
                      +..+.++++.+|++.+
T Consensus        74 ~e~v~~~v~~Ik~~~~   89 (279)
T PRK08508         74 LEYVAKAAKAVKKEVP   89 (279)
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             9999999999863379


No 161
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=71.65  E-value=5.7  Score=20.70  Aligned_cols=18  Identities=33%  Similarity=0.588  Sum_probs=11.6

Q ss_pred             HHCCHHHHHHHHHHHHHH
Q ss_conf             842799999987212876
Q gi|254780812|r   48 MCYTPEYTVELTLQPIRR   65 (346)
Q Consensus        48 ~~~~pela~evtl~p~~r   65 (346)
                      ++.+||.|-.+++.-++.
T Consensus        11 ~~ldpE~aH~~~~~~l~~   28 (336)
T PRK05286         11 FKLDPERAHELTIRALKR   28 (336)
T ss_pred             HCCCHHHHHHHHHHHHHH
T ss_conf             769989999999999998


No 162
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.61  E-value=8.9  Score=19.35  Aligned_cols=10  Identities=20%  Similarity=0.229  Sum_probs=4.7

Q ss_pred             CCCCEEECCC
Q ss_conf             7872230467
Q gi|254780812|r  260 TDSNAIGLDW  269 (346)
Q Consensus       260 ~g~d~isiD~  269 (346)
                      .|+|.+=+|+
T Consensus       207 ~g~diImLDN  216 (277)
T PRK08072        207 AGADIIMFDN  216 (277)
T ss_pred             CCCCEEEECC
T ss_conf             7998999879


No 163
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II  (metal dependent) aldolase subfamilies.
Probab=71.09  E-value=9.1  Score=19.27  Aligned_cols=109  Identities=9%  Similarity=0.132  Sum_probs=65.4

Q ss_pred             HHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC--CCCCCCCC------H----HHHHCCCCC
Q ss_conf             77549816784383110068356777612722689999863088623602--43110000------1----342014787
Q gi|254780812|r  195 QIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFIS--FAKGAGYM------L----KNYRRLTDS  262 (346)
Q Consensus       195 Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~--f~~g~~~~------l----~~~~~~~g~  262 (346)
                      -+..|||+|.+-=.|++--..++     +.-+.++.++.++.  +.|++.  +++|....      +    -.+....|+
T Consensus        85 AvrlGAdaV~~~v~~Gs~~E~~~-----l~~l~~v~~ea~~~--G~Pll~~~yprG~~~~~~~d~~~ia~aaRia~ELGA  157 (235)
T cd00958          85 AVRLGADAVGVTVYVGSEEEREM-----LEELARVAAEAHKY--GLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGA  157 (235)
T ss_pred             HHHCCCCEEEEEEECCCCHHHHH-----HHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             98355567999986898168999-----99999999999983--997899974168765565668999999999999789


Q ss_pred             CEEECCCCCCHHHHHHH----CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             22304677998999970----79846968888467709988999999999997325
Q gi|254780812|r  263 NAIGLDWSVPLSFALEL----QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGS  314 (346)
Q Consensus       263 d~isiD~~~dl~~a~~~----~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~  314 (346)
                      |++-+.|.-|.+..+++    .-.+.+.|.  |  -..+.+++.+.++..++.+..
T Consensus       158 DiVKv~y~g~~e~f~~vv~~~~vPVviaGG--~--k~~~~~~~L~~v~~a~~aGa~  209 (235)
T cd00958         158 DIVKTKYTGDAESFKEVVEGCPVPVVIAGG--P--KKDSEEEFLKMVYDAMEAGAA  209 (235)
T ss_pred             CEEEECCCCCHHHHHHHHHHCCCCEEECCC--C--CCCCHHHHHHHHHHHHHCCCC
T ss_conf             989823999989999999708998998089--9--999999999999999976995


No 164
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis.  Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent.   The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=71.04  E-value=9.1  Score=19.26  Aligned_cols=45  Identities=27%  Similarity=0.461  Sum_probs=24.4

Q ss_pred             HHHHHHCCCCEEEEC-------------------CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC-CCEE
Q ss_conf             777775498167843-------------------83110068356777612722689999863088-6236
Q gi|254780812|r  192 LIAQIHAGVDVIQIF-------------------DTHAGCLGEHEFENYAARSVGRIISAVRRKYP-NAKF  242 (346)
Q Consensus       192 l~~Qi~aGad~iqIF-------------------Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~-~vpi  242 (346)
                      ++.-.+||.|.|+|-                   |-|+|  |.+.--+|    ..+|++++++..+ +.|+
T Consensus       160 A~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGG--s~enR~Rf----~~Eii~aVr~~vg~d~~v  224 (336)
T cd02932         160 ARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGG--SLENRMRF----LLEVVDAVRAVWPEDKPL  224 (336)
T ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCC--CHHHHHHH----HHHHHHHHHHHHCCCCCE
T ss_conf             999998399999863137479998369411677786799--78999889----999999999983998870


No 165
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP,  present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=70.65  E-value=8.6  Score=19.45  Aligned_cols=47  Identities=11%  Similarity=0.088  Sum_probs=27.1

Q ss_pred             HHHCCCHHHHHHHHHHHCCCCEEECCCCC--CCCCHHH-HHCCCCCCEEECCCC
Q ss_conf             76127226899998630886236024311--0000134-201478722304677
Q gi|254780812|r  220 NYAARSVGRIISAVRRKYPNAKFISFAKG--AGYMLKN-YRRLTDSNAIGLDWS  270 (346)
Q Consensus       220 ~f~~p~~kkI~~~ik~~~~~vpiI~f~~g--~~~~l~~-~~~~~g~d~isiD~~  270 (346)
                      ++..||  +++..+++.+ ..|+.-|+-|  +++.--. |++ .|+|.+=+.+-
T Consensus       178 ~~~ap~--elv~~v~~~g-rLPVvnFaAGGiATPADAALmMq-LG~dGVFVGSG  227 (283)
T cd04727         178 EIQAPY--ELVKETAKLG-RLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSG  227 (283)
T ss_pred             HHCCCH--HHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHH-CCCCEEEECCC
T ss_conf             867758--9999999978-97636642678588377999997-28987887765


No 166
>PRK13134 consensus
Probab=70.58  E-value=9.3  Score=19.20  Aligned_cols=61  Identities=21%  Similarity=0.296  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA  198 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a  198 (346)
                      .+..+++.++..|++.  ++|+|        |++|.                  ||     ++..   -.-+|++...++
T Consensus        79 ~~~~~~~~~~~~~~~~--~~piv--------lMtY~------------------N~-----i~~y---G~e~F~~~~~~a  122 (257)
T PRK13134         79 TLRWIMDGLAARKGRL--RAGLV--------LMGYL------------------NP-----FMQY---GFERFVRDAADA  122 (257)
T ss_pred             CHHHHHHHHHHHHCCC--CCCEE--------EEECC------------------HH-----HHHH---HHHHHHHHHHHC
T ss_conf             8789999999874468--99989--------98534------------------59-----9974---689999999867


Q ss_pred             CCCEEEECCCCHHHCCHHHHHH
Q ss_conf             9816784383110068356777
Q gi|254780812|r  199 GVDVIQIFDTHAGCLGEHEFEN  220 (346)
Q Consensus       199 Gad~iqIFDs~ag~Ls~~~f~~  220 (346)
                      |+|.+-|-|     |+.++-.+
T Consensus       123 GvdGvIipD-----LP~eE~~~  139 (257)
T PRK13134        123 GVAGCIIPD-----LPLDEDAD  139 (257)
T ss_pred             CCCEEEECC-----CCHHHHHH
T ss_conf             987599469-----99778899


No 167
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=70.36  E-value=9.4  Score=19.16  Aligned_cols=54  Identities=30%  Similarity=0.382  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC-CCEEECCCCCC
Q ss_conf             9999977777549816784383110068356777612722689999863088-62360243110
Q gi|254780812|r  187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP-NAKFISFAKGA  249 (346)
Q Consensus       187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~-~vpiI~f~~g~  249 (346)
                      ...+.+++..++||+.|.+-||- |...|..|.+        +++.++...+ .+++-.||.+.
T Consensus       147 ~l~~~~~~~~~~ga~~i~l~DTv-G~~~P~~~~~--------~i~~l~~~v~~~~~i~~H~HND  201 (409)
T COG0119         147 FLAEVVKAAIEAGADRINLPDTV-GVATPNEVAD--------IIEALKANVPNKVILSVHCHND  201 (409)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCC-CCCCHHHHHH--------HHHHHHHHCCCCCEEEEEECCC
T ss_conf             99999999997199499977876-8658799999--------9999998378887388983698


No 168
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=70.16  E-value=9.5  Score=19.13  Aligned_cols=52  Identities=12%  Similarity=0.044  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf             9999999777775498167843831100683567776127226899998630886236024
Q gi|254780812|r  185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF  245 (346)
Q Consensus       185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f  245 (346)
                      |+-+++.++.--++|||++++.=+.-...+++.    +..|.+.|.++.     +.|++.|
T Consensus        82 t~~~i~~a~~A~~~Gad~i~v~pP~y~~~~~~~----i~~~~~~va~a~-----~lPi~iY  133 (289)
T pfam00701        82 TREAIHLAQLAEAAGADGVLAVTPYYNKPSQEG----LYQHFKAIAAAT-----DLPVILY  133 (289)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHCC-----CCCEEEE
T ss_conf             999999999999749997887799888999999----999999998315-----9977997


No 169
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=70.08  E-value=9.5  Score=19.12  Aligned_cols=124  Identities=16%  Similarity=0.232  Sum_probs=65.9

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             30137222899999999999999777775498167843-83110068356777612722689999863088623602431
Q gi|254780812|r  169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK  247 (346)
Q Consensus       169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~  247 (346)
                      -+|.+|+.+.++.+              +.|+|++.+. -+.-|.-..+-      .-.-.+++.+++.. ++|+..|. 
T Consensus       152 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~yk~~p------~L~~d~L~~I~~~~-~iPLVLHG-  209 (284)
T PRK12737        152 AMYTNPDAAAEFVE--------------RTGIDSLAVAIGTAHGLYKGEP------KLDFDRLEEIREKV-SIPLVLHG-  209 (284)
T ss_pred             HHCCCHHHHHHHHH--------------HHCCCEEEECCCCCCCCCCCCC------CCCHHHHHHHHHHC-CCCEEEEC-
T ss_conf             13179999999999--------------9698987000375356759998------57899999999863-99989668-


Q ss_pred             CCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HHHCCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             100001342014--78722304677998999---9707984696888846770-998899999999999732599
Q gi|254780812|r  248 GAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LELQKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       248 g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~~~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~  316 (346)
                      |++..-+++.+.  .|+.=+.++......+.   ++...+-  -...||..++ ...+.+++.+++.++.++..|
T Consensus       210 gSG~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~~~~l~~~--p~~~d~~~~~~~~~~a~~e~v~~ki~l~GS~g  282 (284)
T PRK12737        210 ASGVPDEDVKKAISLGICKVNVATELKIAFSDAVKKYFYEN--PKANDPRKYMTPGKEAMKEVVRHKIKVCGSEG  282 (284)
T ss_pred             CCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999997795899858589999999999999878--78689699999999999999999999858999


No 170
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=70.06  E-value=9.6  Score=19.12  Aligned_cols=47  Identities=28%  Similarity=0.361  Sum_probs=35.0

Q ss_pred             HHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf             77754981678438311006835677761272268999986308862360243110
Q gi|254780812|r  194 AQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA  249 (346)
Q Consensus       194 ~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~  249 (346)
                      .-.++|||.|.+-|| .|...|++..        +++..+++..|++|+-.|+.++
T Consensus       145 ~~~~~G~~~i~l~DT-~G~~~P~~v~--------~lv~~l~~~~~~~~i~~H~Hn~  191 (237)
T pfam00682       145 VAQEAGATRINIADT-VGVLTPNEAA--------DLISALKDRVPPVIIEVHCHND  191 (237)
T ss_pred             HHHHCCCCEEEECCC-CCCCCHHHHH--------HHHHHHHHCCCCCCEEEEECCC
T ss_conf             998619857973686-4557989999--------9999999708987158874488


No 171
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=69.66  E-value=9.7  Score=19.06  Aligned_cols=186  Identities=16%  Similarity=0.171  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8777876421024-----53201111479999999961246776524677530137222899999999999999777775
Q gi|254780812|r  123 IFQSISILRKKLP-----NHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIH  197 (346)
Q Consensus       123 v~eAi~~~k~~l~-----~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~  197 (346)
                      ..+|.++-|+--.     ..+-+.|.+ ||.+-....     +.+|              .--.+-+.+.-.+-+...++
T Consensus        95 n~~aa~iAR~aA~~~~~~k~rfVaGsi-GPt~k~~~~-----~~~~--------------~v~fd~l~~ay~eq~~~Li~  154 (311)
T COG0646          95 NQKAARIARRAADEAGDPKPRFVAGSI-GPTNKTLSI-----SPDF--------------AVTFDELVEAYREQVEGLID  154 (311)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCCCCCCC-----CCCC--------------CCCHHHHHHHHHHHHHHHHH
T ss_conf             999999999998644788753898732-686776776-----8766--------------63599999999999999983


Q ss_pred             CCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC--CC---------CCCHHHHHCCCCCCEEE
Q ss_conf             49816784383110068356777612722689999863088623602431--10---------00013420147872230
Q gi|254780812|r  198 AGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK--GA---------GYMLKNYRRLTDSNAIG  266 (346)
Q Consensus       198 aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~--g~---------~~~l~~~~~~~g~d~is  266 (346)
                      .|||++ ++++.-+.+.-+    =++...++..++...   ..|++....  .+         ...+..+.. .+++.++
T Consensus       155 gG~D~i-LiET~~D~l~~K----aA~~a~~~~~~~~~~---~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~-~~~~~vG  225 (311)
T COG0646         155 GGADLI-LIETIFDTLNAK----AAVFAAREVFEELGV---RLPVMISGTITDSGRTLSGQTIEAFLNSLEH-LGPDAVG  225 (311)
T ss_pred             CCCCEE-EEEHHCCHHHHH----HHHHHHHHHHHHCCC---CCCEEEEEEEECCCEECCCCCHHHHHHHHHC-CCCCEEE
T ss_conf             787589-975221689899----999999999873277---6547999998037612379868999998663-5974785


Q ss_pred             CCCCCCHHHHHH----H---CC-CEEEECCCC-HHH-----HC-CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH
Q ss_conf             467799899997----0---79-846968888-467-----70-998899999999999732599289608976336688
Q gi|254780812|r  267 LDWSVPLSFALE----L---QK-EGPVQGNLD-PMR-----LV-VGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDP  331 (346)
Q Consensus       267 iD~~~dl~~a~~----~---~~-~~~lqGNld-P~~-----L~-~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~  331 (346)
                      +.-..-....+.    +   .+ -++...|=- |..     .+ .+++.+.+.+..+.+.+.-  -|..==||    |.|
T Consensus       226 lNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~v--nIvGGCCG----TTP  299 (311)
T COG0646         226 LNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGGV--NIVGGCCG----TTP  299 (311)
T ss_pred             ECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--EEECCCCC----CCH
T ss_conf             345668899999999987416924998079999754688452689989999999999983784--16044369----998


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999973
Q gi|254780812|r  332 KNVLDLVKTVRS  343 (346)
Q Consensus       332 eNv~~~v~~vr~  343 (346)
                      |+++++.++|++
T Consensus       300 eHIraia~~v~~  311 (311)
T COG0646         300 EHIRAIAEAVKG  311 (311)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999998429


No 172
>pfam00809 Pterin_bind Pterin binding enzyme. This family includes a variety of pterin binding enzymes that all adopt a TIM barrel fold. The family includes dihydropteroate synthase EC:2.5.1.15 as well as a group methyltransferase enzymes including methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) that catalyses a key step in the Wood-Ljungdahl pathway of carbon dioxide fixation. It transfers the N5-methyl group from methyltetrahydrofolate (CH3-H4folate) to a cob(I)amide centre in another protein, the corrinoid iron-sulfur protein. MeTr is a member of a family of proteins that includes methionine synthase and methanogenic enzymes that activate the methyl group of methyltetra-hydromethano(or -sarcino)pterin.
Probab=69.53  E-value=9.8  Score=19.04  Aligned_cols=143  Identities=15%  Similarity=0.131  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEC-CC---CHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCC
Q ss_conf             999999777775498167843-83---11006835677761272268999986308862360243110000134201478
Q gi|254780812|r  186 DVSAEYLIAQIHAGVDVIQIF-DT---HAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTD  261 (346)
Q Consensus       186 ~~~~~yl~~Qi~aGad~iqIF-Ds---~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g  261 (346)
                      +.....++.|++.|||+|-|- +|   .+..++++.=.+...|.++.+    ++.  ++|+..=+... ...+.-.+ .|
T Consensus        19 ~~a~~~a~~~i~~GAdiIDIG~eSTrPga~~v~~~eE~~Rl~pvl~~l----~~~--~~~iSIDT~~~-~v~~~al~-~G   90 (208)
T pfam00809        19 DKALEQAREMVEEGADIIDIGGESTRPGAGMVSGEEELERLVPVLEAL----RDQ--DVPISIDTFNA-EVAEAALK-AG   90 (208)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH----HCC--CCCEEEECCCH-HHHHHHHH-CC
T ss_conf             999999999998799899868976899986468899999999999986----357--98289979849-99999998-19


Q ss_pred             CCEEECCCCC--C--H-HHHHHHCCCEEEECCC-CHHHHCC---CHHHHHHHHHHHH----HHHCC-----CCCEEEECC
Q ss_conf             7223046779--9--8-9999707984696888-8467709---9889999999999----97325-----992896089
Q gi|254780812|r  262 SNAIGLDWSV--P--L-SFALELQKEGPVQGNL-DPMRLVV---GNQVMIDGVNAIL----DVLGS-----GPFIFNLGH  323 (346)
Q Consensus       262 ~d~isiD~~~--d--l-~~a~~~~~~~~lqGNl-dP~~L~~---~~e~i~~~~~~~l----~~~~~-----~~~I~nLGh  323 (346)
                      +++++=.+..  |  + +.+++.+-.++++=+- .|..+..   ...++..++...+    +.+..     ..-|+-.|-
T Consensus        91 ~~iINDvsg~~~d~~~~~~~a~~~~~~vlmh~~~~p~~~~~~~~~~~dv~~~i~~~~~~~i~~~~~~Gi~~~~IiiDPGi  170 (208)
T pfam00809        91 ADIINDSSGGKDDPEMAPLAAEYGAPVVLMHMDGNPQGMQENPEYRVDVVEELLRFLTERLEAAEAAGVPPERIILDPGI  170 (208)
T ss_pred             CCEEEECHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCC
T ss_conf             93898701210377999999973999998668999865332676530699999999999999999879897779971887


Q ss_pred             CCCCCCCHHHHHHH
Q ss_conf             76336688999999
Q gi|254780812|r  324 GITPQVDPKNVLDL  337 (346)
Q Consensus       324 Gi~p~tp~eNv~~~  337 (346)
                      |. -.|+..|...+
T Consensus       171 GF-~k~~~~n~~ll  183 (208)
T pfam00809       171 GF-GKTEEHNLELL  183 (208)
T ss_pred             CC-CCCHHHHHHHH
T ss_conf             88-89867789999


No 173
>KOG1606 consensus
Probab=69.50  E-value=9.8  Score=19.04  Aligned_cols=46  Identities=13%  Similarity=0.065  Sum_probs=20.6

Q ss_pred             HHCCCHHHHHHHHHHHCCCCEEECCCCC--CCCCHH-HHHCCCCCCEEECCCC
Q ss_conf             6127226899998630886236024311--000013-4201478722304677
Q gi|254780812|r  221 YAARSVGRIISAVRRKYPNAKFISFAKG--AGYMLK-NYRRLTDSNAIGLDWS  270 (346)
Q Consensus       221 f~~p~~kkI~~~ik~~~~~vpiI~f~~g--~~~~l~-~~~~~~g~d~isiD~~  270 (346)
                      .+.||-  ++...++.+ ..|+.-|.-|  +++.-- -|++ .|||.+=+.+.
T Consensus       192 i~aP~d--Lv~~t~q~G-rlPVV~FAaGGvaTPADAALmMQ-LGCdGVFVGSg  240 (296)
T KOG1606         192 IAAPYD--LVKQTKQLG-RLPVVNFAAGGVATPADAALMMQ-LGCDGVFVGSG  240 (296)
T ss_pred             HCCCHH--HHHHHHHCC-CCCEEEECCCCCCCHHHHHHHHH-CCCCEEEECCC
T ss_conf             647089--999999708-77458742567588167999998-08984886554


No 174
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.11  E-value=6.1  Score=20.51  Aligned_cols=27  Identities=7%  Similarity=0.087  Sum_probs=13.3

Q ss_pred             EECCCCCCC-CCHHHHHCCCCCCEEECCC
Q ss_conf             602431100-0013420147872230467
Q gi|254780812|r  242 FISFAKGAG-YMLKNYRRLTDSNAIGLDW  269 (346)
Q Consensus       242 iI~f~~g~~-~~l~~~~~~~g~d~isiD~  269 (346)
                      .+--++|.+ ..+.+|.+ +|+|.||+..
T Consensus       239 ~lEaSGgI~~~ni~~yA~-tGVD~IS~ga  266 (281)
T PRK06543        239 IVEASGNVSLNTVPAIAS-TGVDVISVGA  266 (281)
T ss_pred             EEEEECCCCHHHHHHHHH-CCCCEEECCH
T ss_conf             999988999999999997-3999998382


No 175
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=68.83  E-value=3.9  Score=21.85  Aligned_cols=114  Identities=16%  Similarity=0.278  Sum_probs=61.4

Q ss_pred             HCCCCEEEE-CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCC--CCCCEEECCCCCCH
Q ss_conf             549816784-383110068356777612722689999863088623602431100001342014--78722304677998
Q gi|254780812|r  197 HAGVDVIQI-FDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRL--TDSNAIGLDWSVPL  273 (346)
Q Consensus       197 ~aGad~iqI-FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~--~g~d~isiD~~~dl  273 (346)
                      +.|+|++.+ |-+.-|.-... ....    .-.+++++++..+++|+..|. |++.--+++.+.  .|+.=+.++....+
T Consensus       164 eTgvD~LAvaiGt~HG~Y~~~-~~~L----~~d~l~~I~~~v~~vPLVLHG-gSG~~~e~i~~ai~~Gi~KvNi~Tdl~~  237 (293)
T PRK07315        164 ETGIDFLAAGIGNIHGPYPEN-WEGL----DLDHLEKLTEAVPGFPIVLHG-GSGIPDDQIQEAIKLGVAKVNVNTECQI  237 (293)
T ss_pred             HCCCCEEEHHHCCCCCCCCCC-CCCC----CHHHHHHHHHCCCCCCEEEEC-CCCCCHHHHHHHHHCCCEEEEECCHHHH
T ss_conf             706643401204524553899-9876----899999998517998579758-9999999999999819558874619899


Q ss_pred             HHH---HHHCC---C----EEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             999---97079---8----4696888846770-998899999999999732599
Q gi|254780812|r  274 SFA---LELQK---E----GPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       274 ~~a---~~~~~---~----~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~  316 (346)
                      .+.   |+...   +    ..--+.+||..++ ...+.+++.+++-++.++..+
T Consensus       238 a~~~~~r~~l~~~~~~~~~~~~k~~~Dpr~~~~~~~~a~~~~v~~ki~lfGS~g  291 (293)
T PRK07315        238 AFANATRKFAREYEANEAEYDKKKLFDPRKFLAPGFKAIQAAVEERIDVFGSAN  291 (293)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999999971566433346777668589999999999999999999968898


No 176
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=68.12  E-value=7.3  Score=19.94  Aligned_cols=22  Identities=18%  Similarity=0.049  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             23787778764210245320111
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIG  142 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIG  142 (346)
                      +..+.+.++..+++.. .+|+|.
T Consensus        76 ~~~~~~~l~~~~~~~~-~~~vi~   97 (308)
T PRK02506         76 FDYYLDYVLDLQKTGP-HKPHFL   97 (308)
T ss_pred             HHHHHHHHHHHHHHCC-CCCEEE
T ss_conf             8999998899996279-997588


No 177
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=68.11  E-value=7.7  Score=19.79  Aligned_cols=21  Identities=14%  Similarity=0.404  Sum_probs=9.4

Q ss_pred             HHHHHHHHHCCCCEEECCCCCC
Q ss_conf             8999986308862360243110
Q gi|254780812|r  228 RIISAVRRKYPNAKFISFAKGA  249 (346)
Q Consensus       228 kI~~~ik~~~~~vpiI~f~~g~  249 (346)
                      +.++.+|+++ ++|+|.|+.+.
T Consensus        60 ~~v~~ik~~~-~lPvilfP~~~   80 (240)
T COG1646          60 NVVEAIKERT-DLPVILFPGSP   80 (240)
T ss_pred             HHHHHHHHHC-CCCEEEECCCH
T ss_conf             9999997506-99889935881


No 178
>pfam01180 DHO_dh Dihydroorotate dehydrogenase.
Probab=68.11  E-value=7.9  Score=19.69  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             23787778764210245320111
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIG  142 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIG  142 (346)
                      ++.+.+.++..+++.+.++|+|-
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~vi~   98 (290)
T pfam01180        76 LDAVLEELLKRRKEYPRPLGIIL   98 (290)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             79999999987775388853786


No 179
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH).  Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate.  These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=68.10  E-value=10  Score=18.85  Aligned_cols=25  Identities=12%  Similarity=0.165  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9999999999977777549816784
Q gi|254780812|r  181 LDFLSDVSAEYLIAQIHAGVDVIQI  205 (346)
Q Consensus       181 l~~lt~~~~~yl~~Qi~aGad~iqI  205 (346)
                      .+.=.+.+.+-++.|+++||+++-+
T Consensus        21 ~~~d~~~i~~~A~~Q~~~GA~~LDV   45 (252)
T cd00740          21 KAEDYDEALDVARQQVEGGAQILDL   45 (252)
T ss_pred             HCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             8579899999999999849988995


No 180
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=66.81  E-value=11  Score=18.67  Aligned_cols=23  Identities=17%  Similarity=0.278  Sum_probs=10.5

Q ss_pred             HHCCCCEEEECCCCHHHCCHHHHHHH
Q ss_conf             75498167843831100683567776
Q gi|254780812|r  196 IHAGVDVIQIFDTHAGCLGEHEFENY  221 (346)
Q Consensus       196 i~aGad~iqIFDs~ag~Ls~~~f~~f  221 (346)
                      +++|+++||+-+..   ++.+.|.+.
T Consensus        30 l~~Gv~~vQlR~K~---~~~~~~~~~   52 (210)
T PRK00043         30 LAGGVTLVQLREKG---ADARERLEL   52 (210)
T ss_pred             HHCCCCEEEECCCC---CCHHHHHHH
T ss_conf             98699999992699---899999999


No 181
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=66.75  E-value=10  Score=18.89  Aligned_cols=110  Identities=15%  Similarity=0.181  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHCCCCEE--EECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC--CCCCCCCCHHHHHCCCCC
Q ss_conf             99999777775498167--84383110068356777612722689999863088623602--431100001342014787
Q gi|254780812|r  187 VSAEYLIAQIHAGVDVI--QIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFIS--FAKGAGYMLKNYRRLTDS  262 (346)
Q Consensus       187 ~~~~yl~~Qi~aGad~i--qIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~--f~~g~~~~l~~~~~~~g~  262 (346)
                      .=++|++.-++||||-+  |+|      ...+.|.+|        ++.+++.+.++|||-  .+=.+-..+..|.+.+|+
T Consensus       164 ~Di~~Lk~KvdaGAdf~ITQ~F------FD~e~f~~f--------~d~~~~~GI~vPIiPGImPi~~~~~~~r~~~~~g~  229 (296)
T PRK09432        164 ADLINLKRKVDAGANRAITQFF------FDVESYLRF--------RDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNV  229 (296)
T ss_pred             HHHHHHHHHHHCCCCEEEEEHE------ECHHHHHHH--------HHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHCC
T ss_conf             8999999999746664630020------049999999--------99999859997401230102578999999998199


Q ss_pred             CEEECCCCCCHHHHHHHCCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             223046779989999707984696888846770-998899999999999732599289608
Q gi|254780812|r  263 NAIGLDWSVPLSFALELQKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGPFIFNLG  322 (346)
Q Consensus       263 d~isiD~~~dl~~a~~~~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~~I~nLG  322 (346)
                      .+       + .+..+.....    .=||..+. .+-+-..+-++++++.+.++=|+..+.
T Consensus       230 ~i-------P-~~l~~~le~~----~~d~e~~~~~Gi~~a~~q~~~L~~~Gv~glHfYTlN  278 (296)
T PRK09432        230 RI-------P-SWMAKMFDGL----DDDAETRKLVGASIAMDMVKILSREGVKDFHFYTLN  278 (296)
T ss_pred             CC-------H-HHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             88-------6-9999998601----899999999999999999999997799955993289


No 182
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=66.35  E-value=11  Score=18.72  Aligned_cols=72  Identities=18%  Similarity=0.152  Sum_probs=43.0

Q ss_pred             HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHH------CCCCCCEE
Q ss_conf             777775498167843831100683567776127226899998630886236024311000013420------14787223
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYR------RLTDSNAI  265 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~------~~~g~d~i  265 (346)
                      +.+-.+.++|+|.+    +.+++.      ..++++++++.+++.+.++|++  ++|. ..-+.+.      +..|+|+.
T Consensus       132 v~~~~~~~~divgl----SallTt------Tm~~mk~vi~~l~~~g~~vkv~--vGGa-~vt~~fa~~~~~~~y~Gad~y  198 (213)
T cd02069         132 LEAAKEHKADIIGL----SGLLVP------SLDEMVEVAEEMNRRGIKIPLL--IGGA-ATSRKHTAVKIAPEYDGPVVY  198 (213)
T ss_pred             HHHHHHCCCCEEEE----ECCCCC------CHHHHHHHHHHHHHCCCCEEEE--ECCC-CCCHHHHHHHHHHCCCCCCEE
T ss_conf             99999749999998----323030------4999999999999749981799--7163-278889987641036798078


Q ss_pred             ECCCCCCHHHH
Q ss_conf             04677998999
Q gi|254780812|r  266 GLDWSVPLSFA  276 (346)
Q Consensus       266 siD~~~dl~~a  276 (346)
                      +-|-..-.+.+
T Consensus       199 ~~dA~~aV~~~  209 (213)
T cd02069         199 VKDASRALGVA  209 (213)
T ss_pred             ECCHHHHHHHH
T ss_conf             43999999999


No 183
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=66.30  E-value=11  Score=18.61  Aligned_cols=52  Identities=19%  Similarity=0.306  Sum_probs=28.6

Q ss_pred             HHHHHHCCCCEEEECCCCH----HHCCH------HHHH---HHHCCCHHHHHHHHHHHCC-CCEEE
Q ss_conf             7777754981678438311----00683------5677---7612722689999863088-62360
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHA----GCLGE------HEFE---NYAARSVGRIISAVRRKYP-NAKFI  243 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~a----g~Ls~------~~f~---~f~~p~~kkI~~~ik~~~~-~vpiI  243 (346)
                      ++.-+++|-|+|-|--..+    +.|||      +.|-   +-=..+..++++++++..| +.|+.
T Consensus       562 A~rA~~AGFD~IEiH~AHGYLl~qFLSPlsN~RtDeYGGsleNR~Rf~lEV~~aVR~~~p~~~Pl~  627 (770)
T PRK08255        562 TRRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPADKPMS  627 (770)
T ss_pred             HHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             999998399989995234555887538644677543578888777889999999998678988669


No 184
>pfam07745 Glyco_hydro_53 Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.
Probab=66.16  E-value=11  Score=18.59  Aligned_cols=177  Identities=23%  Similarity=0.258  Sum_probs=89.1

Q ss_pred             CCEECCHHHCCCEEEECCCCCCCCCCCCHHH-----HHC----CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             3200104324433731688752223333355-----420----5670123443237877787642102453201111479
Q gi|254780812|r   76 DILVIADALGRNVRFVENEGPRMDPITTQEI-----YLL----NPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGA  146 (346)
Q Consensus        76 DIl~~~ealG~~v~f~~~~GP~~~p~~~~~~-----~~~----~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~Gg  146 (346)
                      ||-..++---+++.|....|-..+++..-+.     .++    +|. +.....+..|.+..+..|+.  +-+-++-|-=+
T Consensus         5 DiS~~~~~E~~G~~y~d~~G~~~d~~~iLk~~GvN~vRlRvWvnP~-~~g~~dl~~v~~~akrak~~--GmkvlLdfHYS   81 (332)
T pfam07745         5 DISSLNELENAGVSYKNENGQTQDLFTILKDAGVNSIRLRVWVNPY-DTGNNDLDDVIEIAKRAKAA--GMKVLLDFHYS   81 (332)
T ss_pred             CCHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCEEEEEEEECCC-CCCCCCHHHHHHHHHHHHHC--CCEEEEEEECC
T ss_conf             1046999997698689999988689999997698869999865788-77768999999999999987--99399986313


Q ss_pred             H-HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEC-CCCHHHCC----HHHH
Q ss_conf             9-99999961246776524677530137222899999999999999777775498--167843-83110068----3567
Q gi|254780812|r  147 P-WTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGV--DVIQIF-DTHAGCLG----EHEF  218 (346)
Q Consensus       147 P-~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGa--d~iqIF-Ds~ag~Ls----~~~f  218 (346)
                      = |+=        +.+. .+-+.|--   ..+.+|-+.+-+.+.+-+...-++|+  |.|||- |...|+|-    ...|
T Consensus        82 D~WAD--------Pg~Q-~~P~aW~~---~~~~~L~~~vy~yT~~vl~~lk~~Gv~pd~VQVGNEin~GmLwp~g~~~~~  149 (332)
T pfam07745        82 DTWAD--------PGKQ-TKPKAWAS---LDFEQLKKALYNYTKDVLNALKEAGITPDMVQVGNEITSGMLWPEGKTPNW  149 (332)
T ss_pred             CCCCC--------CCCC-CCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCH
T ss_conf             55468--------5557-68633345---999999999999999999999986999644786413556644768897789


Q ss_pred             HHHHCCCHHHHHHHHHHHCCCCEEE-CCCCCCC-C----CHHHHHC-CCCCCEEECC
Q ss_conf             7761272268999986308862360-2431100-0----0134201-4787223046
Q gi|254780812|r  219 ENYAARSVGRIISAVRRKYPNAKFI-SFAKGAG-Y----MLKNYRR-LTDSNAIGLD  268 (346)
Q Consensus       219 ~~f~~p~~kkI~~~ik~~~~~vpiI-~f~~g~~-~----~l~~~~~-~~g~d~isiD  268 (346)
                      ..|+ ..++.=++++|+..|+++|+ |+..+.. .    .+..+.. -...|+|++.
T Consensus       150 ~~~a-~ll~ag~~AVr~~~~~~ki~lHl~~~~~~~~~~~~fd~l~~~gvd~DviG~S  205 (332)
T pfam07745       150 ENLA-KLLNSGYWAVKDVNPTIKVMIHLDNGEDNGTYRWWFDNLLAAGVDFDVIGVS  205 (332)
T ss_pred             HHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             9999-9999999999853999739999589877588999999999759980267656


No 185
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS.  The enzymatic mechanism of 1VHN is not known at the present.
Probab=65.86  E-value=12  Score=18.55  Aligned_cols=90  Identities=9%  Similarity=0.052  Sum_probs=44.8

Q ss_pred             HCCCHHHHHHHHHHHHH------------------HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHH
Q ss_conf             01372228999999999------------------999997777754981678438311006835677761272268999
Q gi|254780812|r  170 AYQNSRAFNWLLDFLSD------------------VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIIS  231 (346)
Q Consensus       170 ~~~~p~~~~~ll~~lt~------------------~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~  231 (346)
                      |.++|+.+.++++.+.+                  .+.++++.--++||+.+.|-==.+.+       .|.-|..-+.+.
T Consensus       104 Ll~~p~~v~~iv~~~~~~~~ipVsvKiRlg~~~~~~~~~~~~~l~~~G~~~ltvH~Rt~~q-------~~~~~a~~e~i~  176 (231)
T cd02801         104 LLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQ-------RYSGPADWDYIA  176 (231)
T ss_pred             HHHCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHH-------CCCCCCCHHHHH
T ss_conf             7629789999999999756994799997077863479999999997699899983561441-------467762269999


Q ss_pred             HHHHHCCCCEEECCCCCCC--CCHHHHHCCCCCCEEECC
Q ss_conf             9863088623602431100--001342014787223046
Q gi|254780812|r  232 AVRRKYPNAKFISFAKGAG--YMLKNYRRLTDSNAIGLD  268 (346)
Q Consensus       232 ~ik~~~~~vpiI~f~~g~~--~~l~~~~~~~g~d~isiD  268 (346)
                      .+++ .+++|+|. .+|..  ....++.+.+|+|.+.+.
T Consensus       177 ~~~~-~~~ipvi~-NGdI~s~~d~~~~~~~tg~dgvMig  213 (231)
T cd02801         177 EIKE-AVSIPVIA-NGDIFSLEDALRCLEQTGVDGVMIG  213 (231)
T ss_pred             HHHH-CCCCEEEE-ECCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf             9986-59977998-3890999999999985099999987


No 186
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.73  E-value=12  Score=18.53  Aligned_cols=46  Identities=28%  Similarity=0.299  Sum_probs=23.2

Q ss_pred             HHHHHHCCCCEEEECCCCHHH----CCHH------HH---HHHHCCCHHHHHHHHHHHC
Q ss_conf             777775498167843831100----6835------67---7761272268999986308
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAGC----LGEH------EF---ENYAARSVGRIISAVRRKY  237 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag~----Ls~~------~f---~~f~~p~~kkI~~~ik~~~  237 (346)
                      ++.-.+||.|.|+|-=..+-+    |||.      .|   -+-=..+..+|++++++..
T Consensus       147 A~~A~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtD~YGGs~eNR~Rf~~eii~air~~v  205 (327)
T cd02803         147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAV  205 (327)
T ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             99999849998998357661888721754698777788898999899999999999973


No 187
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=65.42  E-value=12  Score=18.49  Aligned_cols=92  Identities=27%  Similarity=0.376  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC--EEEEC-CCCHHHC---CHH-HHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCC
Q ss_conf             8999999999999997777754981--67843-8311006---835-67776127226899998630886236-024311
Q gi|254780812|r  177 FNWLLDFLSDVSAEYLIAQIHAGVD--VIQIF-DTHAGCL---GEH-EFENYAARSVGRIISAVRRKYPNAKF-ISFAKG  248 (346)
Q Consensus       177 ~~~ll~~lt~~~~~yl~~Qi~aGad--~iqIF-Ds~ag~L---s~~-~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g  248 (346)
                      ++++-..+-+.+..-+..+.+.|++  .||+- ++..|.|   ... .|++++. -+++-+.++|+-.|++++ |||+-|
T Consensus       147 fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~-L~n~g~~avrev~p~ikv~lHla~g  225 (403)
T COG3867         147 FEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAA-LLNAGIRAVREVSPTIKVALHLAEG  225 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCCCHHHHHH-HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             999999999999999999997489945167545467713246788767689999-9997765653248971699993478


Q ss_pred             CCC-CHHHHH-----CCCCCCEEECCC
Q ss_conf             000-013420-----147872230467
Q gi|254780812|r  249 AGY-MLKNYR-----RLTDSNAIGLDW  269 (346)
Q Consensus       249 ~~~-~l~~~~-----~~~g~d~isiD~  269 (346)
                      .+. .+.-+.     .....|+|++.+
T Consensus       226 ~~n~~y~~~fd~ltk~nvdfDVig~Sy  252 (403)
T COG3867         226 ENNSLYRWIFDELTKRNVDFDVIGSSY  252 (403)
T ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             887523588878877389840776312


No 188
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.85  E-value=9.4  Score=19.15  Aligned_cols=61  Identities=15%  Similarity=0.201  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE----CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHC-CCCEEECCCCCCCCCH
Q ss_conf             999999977777549816784----38311006835677761272268999986308-8623602431100001
Q gi|254780812|r  185 SDVSAEYLIAQIHAGVDVIQI----FDTHAGCLGEHEFENYAARSVGRIISAVRRKY-PNAKFISFAKGAGYML  253 (346)
Q Consensus       185 t~~~~~yl~~Qi~aGad~iqI----FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~-~~vpiI~f~~g~~~~l  253 (346)
                      |+...+|++.+. +.||++.|    ||.|-|--.+.+       -.++++..++... .|+++.++.++-...+
T Consensus        16 t~~fl~Fl~~~a-~~ad~lyilGDifd~w~g~~~~~~-------~~~~V~~~l~~~a~~G~~v~~i~GN~Dfll   81 (237)
T COG2908          16 TAFFLDFLREEA-AQADALYILGDIFDGWIGDDEPPQ-------LHRQVAQKLLRLARKGTRVYYIHGNHDFLL   81 (237)
T ss_pred             HHHHHHHHHHCC-CCCCEEEEECHHHHHHHCCCCCCH-------HHHHHHHHHHHHHHCCCEEEEECCCHHHHH
T ss_conf             999999998353-567579995001666626876038-------999999999999865984799447618888


No 189
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=63.96  E-value=12  Score=18.31  Aligned_cols=31  Identities=26%  Similarity=0.283  Sum_probs=20.6

Q ss_pred             CCCEEEE---CCCCCC-CCCHHHHHHHHHHHHHCC
Q ss_conf             9928960---897633-668899999999997306
Q gi|254780812|r  315 GPFIFNL---GHGITP-QVDPKNVLDLVKTVRSEK  345 (346)
Q Consensus       315 ~~~I~nL---GhGi~p-~tp~eNv~~~v~~vr~~~  345 (346)
                      .|+|..+   -+|+.. ..+++.++.|++++|.-+
T Consensus       227 dG~IvgT~lK~~G~~~n~VD~~Rv~~~v~~a~~~~  261 (263)
T COG0434         227 DGVIVGTSLKKGGVTWNPVDLERVRRFVEAARRLR  261 (263)
T ss_pred             CCEEEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf             86699786603886368459999999999998753


No 190
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=63.75  E-value=13  Score=18.28  Aligned_cols=53  Identities=13%  Similarity=0.026  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf             9999999777775498167843831100683567776127226899998630886236024
Q gi|254780812|r  185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF  245 (346)
Q Consensus       185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f  245 (346)
                      |.-+++.++.-.++|||++++.-|.-.-.+.+.    ...|.++|.++    .|+.|+++|
T Consensus        89 t~~ai~~a~~a~~~Gad~~lv~~P~y~~~~~~~----l~~~~~~ia~a----~~~lPiilY  141 (309)
T cd00952          89 TRDTIARTRALLDLGADGTMLGRPMWLPLDVDT----AVQFYRDVAEA----VPEMAIAIY  141 (309)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHH----CCCCCEEEE
T ss_conf             999999999998469899998888588999999----99999999986----789988999


No 191
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=63.57  E-value=13  Score=18.26  Aligned_cols=52  Identities=17%  Similarity=0.187  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf             99997777754981678438311006835677761272268999986308862360243110
Q gi|254780812|r  188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA  249 (346)
Q Consensus       188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~  249 (346)
                      +.++++.-.++|||.|.+-|| .|.+.|.++.++        ++.+++.. ++|+-.||.+.
T Consensus       147 l~~~~~~a~~~Gad~I~l~DT-~G~~~P~~v~~~--------v~~l~~~~-~~~i~~H~HNd  198 (378)
T PRK11858        147 LIEAAKAAEEAGADRVRFCDT-VGILDPFTMYEL--------VKELVEAV-DIPIEVHCHND  198 (378)
T ss_pred             HHHHHHHHHHCCCCEEEECCC-CCCCCHHHHHHH--------HHHHHHHC-CCCEEEEEECC
T ss_conf             999999999749989996365-566699999999--------99999726-98559997077


No 192
>TIGR00502 nagB glucosamine-6-phosphate isomerase; InterPro: IPR004547 Glucosamine-6-phosphate isomerase (3.5.99.6 from EC) catalyses the conversion of D-glucosamine 6-phosphate and water to D-fructose 6-phosphate in the N-acetylglucosamine utilization pathway. The enzyme was formerly classified as EC 5.3.1.10. This family also includes a closely related pair of proteins from Bacillus subtilis, one of which is uncharacterised but included as a member of the orthologous set.; GO: 0004342 glucosamine-6-phosphate deaminase activity, 0006044 N-acetylglucosamine metabolic process.
Probab=63.49  E-value=13  Score=18.25  Aligned_cols=103  Identities=16%  Similarity=0.135  Sum_probs=49.8

Q ss_pred             HHHHH--HHHHHHHHHHHCCCC--CCCHHHHHHH--------HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             11114--799999999612467--7652467753--------01372228999999999999997777754981678438
Q gi|254780812|r  140 LIGFC--GAPWTVASYMISGGF--IKDHGQNRVF--------AYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFD  207 (346)
Q Consensus       140 LIGF~--GgP~TlasYmieG~~--sk~~~~~~~~--------~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFD  207 (346)
                      ++|-+  |.|.+++--||+---  .=+|.++..+        -.++|+..|-.|-   +-.-+|++.    -.+=+.|-.
T Consensus        36 VLGLpTGgTP~g~Yk~LI~l~qa~~~sF~~v~TfNlDEY~GL~~~hP~SYh~FM~---~~fF~HId~----~~~~i~Iln  108 (260)
T TIGR00502        36 VLGLPTGGTPVGTYKQLIRLYQAGKISFQNVVTFNLDEYVGLSEEHPESYHSFMH---NNFFQHIDI----KPENINILN  108 (260)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHH---HHCCCCCCC----CCCCCCCCC
T ss_conf             6106888875789999999850487432410553141001587888852137866---512354477----734455888


Q ss_pred             CCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCC-HHHHHCCCCC
Q ss_conf             311006835677761272268999986308862360243110000-1342014787
Q gi|254780812|r  208 THAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYM-LKNYRRLTDS  262 (346)
Q Consensus       208 s~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~-l~~~~~~~g~  262 (346)
                      =.|..|..     =|..|-++|-+    .  | .+-.|-.|.+.. -..+.+ .|.
T Consensus       109 Gna~dl~a-----eCr~YE~~i~s----~--G-~i~lf~gGiG~dGHIaFNE-PgS  151 (260)
T TIGR00502       109 GNADDLEA-----ECRRYEEKIKS----Y--G-GIDLFLGGIGADGHIAFNE-PGS  151 (260)
T ss_pred             CCCHHHHH-----HHHHHHHHHHH----H--C-CEEEEEEEECCCCCEEECC-CCC
T ss_conf             68655788-----99899999985----1--8-8178973024888632168-888


No 193
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=63.09  E-value=12  Score=18.48  Aligned_cols=13  Identities=38%  Similarity=0.557  Sum_probs=6.2

Q ss_pred             HHHHHHHCCCCEE
Q ss_conf             9777775498167
Q gi|254780812|r  191 YLIAQIHAGVDVI  203 (346)
Q Consensus       191 yl~~Qi~aGad~i  203 (346)
                      -+.+.+++|||+|
T Consensus       246 Ra~~Lv~aGvD~l  258 (497)
T PRK07107        246 RVPALVEAGADVL  258 (497)
T ss_pred             HHHHHHHCCCCEE
T ss_conf             9999998599999


No 194
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=62.93  E-value=11  Score=18.70  Aligned_cols=34  Identities=26%  Similarity=0.229  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHH
Q ss_conf             99999997777754981678438311006835677761
Q gi|254780812|r  185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYA  222 (346)
Q Consensus       185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~  222 (346)
                      .+-.|+=+++.++||||+|..    -++-++++|++|+
T Consensus       165 ld~AI~Ra~AY~eAGAD~if~----~al~~~e~i~~f~  198 (289)
T COG2513         165 LDDAIERAQAYVEAGADAIFP----EALTDLEEIRAFA  198 (289)
T ss_pred             HHHHHHHHHHHHHCCCCEECC----CCCCCHHHHHHHH
T ss_conf             799999999999759768713----6679999999999


No 195
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=62.80  E-value=6.1  Score=20.46  Aligned_cols=127  Identities=14%  Similarity=0.278  Sum_probs=67.7

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCC-----CHHHHHHHHHHHCCCCE
Q ss_conf             530137222899999999999999777775498167843-831100683567776127-----22689999863088623
Q gi|254780812|r  168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAAR-----SVGRIISAVRRKYPNAK  241 (346)
Q Consensus       168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p-----~~kkI~~~ik~~~~~vp  241 (346)
                      .-+|.+|+.+.++.+              +.|+|.+.+. -+.-|.     |. +..+     ..-+++++++++.|++|
T Consensus       169 ~~~yT~Peea~~Fv~--------------~TgvD~LAvaiGt~HG~-----YK-~~~~p~~~~l~~~~L~~i~~~~~~~p  228 (347)
T PRK13399        169 DQMLTDPDQAVDFVQ--------------RTGVDALAIAIGTSHGA-----YK-FTRKPDGDILAIDRIEEIHARLPNTH  228 (347)
T ss_pred             HHHCCCHHHHHHHHH--------------HHCCCEEEEEECCCCCC-----CC-CCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             332489999999999--------------86898586440534478-----77-88899855237999999997378987


Q ss_pred             EECCCCCC--------------------CCCHHHHHCC--CCCCEEECCCCCCHHHH---HHHCCCEEEECCCCHHHHC-
Q ss_conf             60243110--------------------0001342014--78722304677998999---9707984696888846770-
Q gi|254780812|r  242 FISFAKGA--------------------GYMLKNYRRL--TDSNAIGLDWSVPLSFA---LELQKEGPVQGNLDPMRLV-  295 (346)
Q Consensus       242 iI~f~~g~--------------------~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~~~~~~~lqGNldP~~L~-  295 (346)
                      +..+.+..                    +.-.+++.+.  .|+.=+.+|......+.   |+...+-  -+.+||..++ 
T Consensus       229 LVLHGgS~vp~~~~~~~~~~GG~~~~~~G~~~e~i~~AI~~GV~KiNi~Tdl~~A~~~~vr~~l~~~--p~~~Dpr~~l~  306 (347)
T PRK13399        229 LVMHGSSSVPQELQEIINAYGGDMKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEH--PSEFDPRKALK  306 (347)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHC--CCCCCCHHHHH
T ss_conf             6874797884788899997077666788999999999998197799858377899999999999859--77689089999


Q ss_pred             CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             998899999999999732599
Q gi|254780812|r  296 VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       296 ~~~e~i~~~~~~~l~~~~~~~  316 (346)
                      ...+.+.+.++..++.++..|
T Consensus       307 ~~~~am~~~v~~ki~~fGS~g  327 (347)
T PRK13399        307 PAMKAMTSLCKQRFEAFGTAG  327 (347)
T ss_pred             HHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999999999999849977


No 196
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=62.06  E-value=13  Score=18.08  Aligned_cols=17  Identities=24%  Similarity=0.360  Sum_probs=7.4

Q ss_pred             HHHHHHHHHCCCCEEEE
Q ss_conf             99977777549816784
Q gi|254780812|r  189 AEYLIAQIHAGVDVIQI  205 (346)
Q Consensus       189 ~~yl~~Qi~aGad~iqI  205 (346)
                      ++.+..+++.|||+|-|
T Consensus        41 ~~~a~~mi~~GAdiIDI   57 (282)
T PRK11613         41 VKHANLMINAGATIIDV   57 (282)
T ss_pred             HHHHHHHHHCCCCEEEE
T ss_conf             99999999889969997


No 197
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=61.93  E-value=14  Score=18.06  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=10.3

Q ss_pred             CCCCEECCHHHCCCEEEECCCCCC
Q ss_conf             133200104324433731688752
Q gi|254780812|r   74 FSDILVIADALGRNVRFVENEGPR   97 (346)
Q Consensus        74 FsDIl~~~ealG~~v~f~~~~GP~   97 (346)
                      |-+++..+.-+|+.+-.  +.-|.
T Consensus        51 ~~ell~~Anklg~~viv--DvnPs   72 (360)
T COG3589          51 FKELLKEANKLGLRVIV--DVNPS   72 (360)
T ss_pred             HHHHHHHHHHCCCEEEE--ECCHH
T ss_conf             99999999865968999--74877


No 198
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=61.55  E-value=14  Score=18.02  Aligned_cols=19  Identities=16%  Similarity=0.329  Sum_probs=7.5

Q ss_pred             CCCCEEECCC-CCCHHHHHH
Q ss_conf             7872230467-799899997
Q gi|254780812|r  260 TDSNAIGLDW-SVPLSFALE  278 (346)
Q Consensus       260 ~g~d~isiD~-~~dl~~a~~  278 (346)
                      .|+|++++.+ ..++..+|+
T Consensus        86 ~gADGVHlGq~d~~~~~aR~  105 (221)
T PRK06512         86 VKADGLHIEGNAAALAEAIE  105 (221)
T ss_pred             CCCCEEEECCCCCCHHHHHH
T ss_conf             09986652687531999999


No 199
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain.  DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=61.14  E-value=14  Score=17.97  Aligned_cols=111  Identities=14%  Similarity=0.172  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             23787778764210245320111147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG  199 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG  199 (346)
                      +..+++-++..+++. .++|+|..+++.                         ..+.+.++.+.+.           ++|
T Consensus        82 ~~~~~~~l~~~~~~~-~~~pli~Si~~~-------------------------~~~~~~~~a~~~~-----------~~g  124 (289)
T cd02810          82 LDVWLQDIAKAKKEF-PGQPLIASVGGS-------------------------SKEDYVELARKIE-----------RAG  124 (289)
T ss_pred             HHHHHHHHHHHHHCC-CCCEEEEECCCC-------------------------CHHHHHHHHHHHH-----------HHC
T ss_conf             899999999998617-995399978889-------------------------8789999999999-----------847


Q ss_pred             CCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC---C-CCHHHHH---CCCCCCEEECCCCC
Q ss_conf             81678438311006835677761272268999986308862360243110---0-0013420---14787223046779
Q gi|254780812|r  200 VDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA---G-YMLKNYR---RLTDSNAIGLDWSV  271 (346)
Q Consensus       200 ad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~---~-~~l~~~~---~~~g~d~isiD~~~  271 (346)
                      ||++-+-=|.-+.-....+. .....+.+|++.+++.. ++|++.  |=+   + ..+..+.   ...|+|++.+-++.
T Consensus       125 ad~lElNiScPn~~~~~~~~-~~~~~~~~i~~~v~~~~-~~Pv~v--KLsp~~~~~~~~~ia~~~~~~ga~gv~~~Nt~  199 (289)
T cd02810         125 AKALELNLSCPNVGGGRQLG-QDPEAVANLLKAVKAAV-DIPLLV--KLSPYFDLEDIVELAKAAERAGADGLTAINTI  199 (289)
T ss_pred             CCEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHCC-CCCEEE--ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             98489984036756553201-49999999999998602-687488--42788761689999999997599689996787


No 200
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=61.11  E-value=14  Score=17.96  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHCCCCE-EEECCC
Q ss_conf             99999977777549816-784383
Q gi|254780812|r  186 DVSAEYLIAQIHAGVDV-IQIFDT  208 (346)
Q Consensus       186 ~~~~~yl~~Qi~aGad~-iqIFDs  208 (346)
                      +.+.+++....+.|+-. +-+||+
T Consensus       128 ~~~~~~~~~~~~~gi~pe~e~yd~  151 (274)
T pfam05853       128 ADVEEFAARMQEAGVKPEFECFDV  151 (274)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECH
T ss_conf             999999999998599149999779


No 201
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=59.75  E-value=15  Score=17.81  Aligned_cols=22  Identities=5%  Similarity=0.063  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             378777876421024532011114
Q gi|254780812|r  121 LPIFQSISILRKKLPNHITLIGFC  144 (346)
Q Consensus       121 ~~v~eAi~~~k~~l~~~~pLIGF~  144 (346)
                      ..+.+-++..+++.  ++|+|..+
T Consensus        75 ~~~~~~l~~~~~~~--~~pvi~si   96 (296)
T cd04740          75 EAFLEELLPWLREF--GTPVIASI   96 (296)
T ss_pred             HHHHHHHHHHHCCC--CCEEEEEE
T ss_conf             89998789863568--97189981


No 202
>KOG2918 consensus
Probab=59.72  E-value=9.7  Score=19.06  Aligned_cols=17  Identities=12%  Similarity=0.311  Sum_probs=8.8

Q ss_pred             CCHHHHHHHHHHHCCCCEE
Q ss_conf             7226899998630886236
Q gi|254780812|r  224 RSVGRIISAVRRKYPNAKF  242 (346)
Q Consensus       224 p~~kkI~~~ik~~~~~vpi  242 (346)
                      ++-+-.++.+|.+  |+|.
T Consensus       233 ~Fg~vM~~nlk~r--~~~L  249 (335)
T KOG2918         233 RFGKVMLANLKRR--GCPL  249 (335)
T ss_pred             HHHHHHHHHHHHC--CCCC
T ss_conf             3899999988854--9977


No 203
>KOG2335 consensus
Probab=59.20  E-value=15  Score=17.74  Aligned_cols=122  Identities=20%  Similarity=0.327  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH---------------
Q ss_conf             37877787642102453201111479999999961246776524677530137222899999999---------------
Q gi|254780812|r  121 LPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLS---------------  185 (346)
Q Consensus       121 ~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt---------------  185 (346)
                      ....+|.+++-.- .+.+-|  -||.|=+.|-       ...|-   .+|..+|+++++++..+.               
T Consensus        86 ~~ll~Aa~lv~~y-~D~idl--NcGCPq~~a~-------~g~yG---a~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~  152 (358)
T KOG2335          86 ENLLKAARLVQPY-CDGIDL--NCGCPQKVAK-------RGGYG---AFLMDNPELVGEMVSAVRANLNVPVSVKIRIFV  152 (358)
T ss_pred             HHHHHHHHHHHHH-CCCCCC--CCCCCHHHHH-------CCCCC---CEECCCHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             9999999986533-472041--5899878884-------37726---000238899999999998525998699998557


Q ss_pred             --HHHHHHHHHHHHCCCCEEEECCCCH---HH-CCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC--CCHHHHH
Q ss_conf             --9999997777754981678438311---00-68356777612722689999863088623602431100--0013420
Q gi|254780812|r  186 --DVSAEYLIAQIHAGVDVIQIFDTHA---GC-LGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG--YMLKNYR  257 (346)
Q Consensus       186 --~~~~~yl~~Qi~aGad~iqIFDs~a---g~-Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~--~~l~~~~  257 (346)
                        +-+++|+++--+||++.+.|---.+   |. ..|-+|+         -+.++++..+++|+|.- +|+.  .......
T Consensus       153 d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~---------~i~~v~~~~~~ipviaN-GnI~~~~d~~~~~  222 (358)
T KOG2335         153 DLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWE---------AIKAVRENVPDIPVIAN-GNILSLEDVERCL  222 (358)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCCHH---------HHHHHHHHCCCCCEEEE-CCCCCHHHHHHHH
T ss_conf             6787899999998679868999365577628888876779---------99999974767708950-8857689999999


Q ss_pred             CCCCCCEE
Q ss_conf             14787223
Q gi|254780812|r  258 RLTDSNAI  265 (346)
Q Consensus       258 ~~~g~d~i  265 (346)
                      +.||+|++
T Consensus       223 ~~tG~dGV  230 (358)
T KOG2335         223 KYTGADGV  230 (358)
T ss_pred             HHHCCCEE
T ss_conf             97587468


No 204
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=58.99  E-value=12  Score=18.39  Aligned_cols=103  Identities=17%  Similarity=0.245  Sum_probs=53.9

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHH---HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf             778764210245320111147999---9999961246776524677530137222899999999999999777775498-
Q gi|254780812|r  125 QSISILRKKLPNHITLIGFCGAPW---TVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGV-  200 (346)
Q Consensus       125 eAi~~~k~~l~~~~pLIGF~GgP~---TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGa-  200 (346)
                      +.++..|++.| +.+++-.+-+--   ..+-+.+   .|.|-.+...++ .+-   .+++=.=-..+..|+..|  .|. 
T Consensus       112 ~~~~~~~~~~P-~~~vV~YvNtsA~vKA~~Di~c---TSsNAvkvVe~~-~~~---~~Iif~PD~~Lg~yva~~--tg~k  181 (324)
T COG0379         112 EEVRAFKEKHP-DAPVVTYVNTSAEVKAEADICC---TSSNAVKVVESA-LDG---DKILFLPDKNLGRYVAKQ--TGAK  181 (324)
T ss_pred             HHHHHHHHHCC-CCCEEEEEECHHHHHHHCCEEE---ECCCHHHHHHHC-CCC---CCEEECCCHHHHHHHHHH--CCCC
T ss_conf             99999999788-9856999618198886559389---463099999721-579---838983707799999997--5998


Q ss_pred             CEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             16784383110068356777612722689999863088623602431
Q gi|254780812|r  201 DVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK  247 (346)
Q Consensus       201 d~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~  247 (346)
                      ++|    .|-|..+..+      .+..+-+..+|++||+..++.||-
T Consensus       182 ~ii----~w~G~C~VH~------~ft~~~i~~~k~~~Pda~vlvHPE  218 (324)
T COG0379         182 KII----LWPGHCIVHE------EFTAEDIEELKEKYPDAEVLVHPE  218 (324)
T ss_pred             CEE----EECCCCCHHH------HCCHHHHHHHHHHCCCCEEEECCC
T ss_conf             289----8787410101------108999999998789987997899


No 205
>PRK08904 consensus
Probab=58.58  E-value=15  Score=17.67  Aligned_cols=146  Identities=16%  Similarity=0.234  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH--HHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-----
Q ss_conf             32378777876421024532011114799999999--61246776524677530137222899999999999999-----
Q gi|254780812|r  119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASY--MISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY-----  191 (346)
Q Consensus       119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasY--mieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y-----  191 (346)
                      +.+..+++|+.+++++++ + +|| +|.=.|...-  .++-|  -+|.       --|-.-..+++.+.+.-+.|     
T Consensus        44 rtp~a~~~i~~l~~~~p~-~-~vG-aGTVl~~e~~~~a~~aG--A~Fi-------VSP~~~~~v~~~a~~~~i~~iPGv~  111 (207)
T PRK08904         44 RTPVGLDAIRLIAKEVPN-A-IVG-AGTVTNPEQLKAVEDAG--AVFA-------ISPGLHESLAKAGHNSGIPLIPGVA  111 (207)
T ss_pred             CCCHHHHHHHHHHHHCCC-C-EEE-EEECCCHHHHHHHHHCC--CCEE-------ECCCCCHHHHHHHHHCCCCEECCCC
T ss_conf             991399999999986898-7-685-53136899999999849--9999-------8489989999999983997657869


Q ss_pred             ----HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             ----77777549816784383110068356777612722689999863088623602431100-0013420147872230
Q gi|254780812|r  192 ----LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG-YMLKNYRRLTDSNAIG  266 (346)
Q Consensus       192 ----l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~-~~l~~~~~~~g~d~is  266 (346)
                          +..-.++|++.+.+|=  |+.++...|           +++++.-+|+++++- .+|.+ .++.+|.+        
T Consensus       112 TpsEi~~A~~~G~~~vK~FP--A~~~GG~~~-----------lkal~~pfp~i~~~p-TGGV~~~N~~~yl~--------  169 (207)
T PRK08904        112 TPGEIQLALEHGIDTLKLFP--AEVVGGKAM-----------LKALYGPYADVRFCP-TGGISLATAPEYLA--------  169 (207)
T ss_pred             CHHHHHHHHHCCCCEEEECC--CHHCCCHHH-----------HHHHHCCCCCCEEEE-CCCCCHHHHHHHHH--------
T ss_conf             99999999987999899776--222088999-----------998746599980886-58989878999981--------


Q ss_pred             CCCCCCHHHHHHHCCCEEEECC-CCHHHH--CCCHHHHHHHHHHHHH
Q ss_conf             4677998999970798469688-884677--0998899999999999
Q gi|254780812|r  267 LDWSVPLSFALELQKEGPVQGN-LDPMRL--VVGNQVMIDGVNAILD  310 (346)
Q Consensus       267 iD~~~dl~~a~~~~~~~~lqGN-ldP~~L--~~~~e~i~~~~~~~l~  310 (346)
                                  .+.-.++-|. +-|.-+  .+++++|.+.+++.+.
T Consensus       170 ------------~~~v~~vgGS~l~~~~~i~~~d~~~I~~~a~~a~~  204 (207)
T PRK08904        170 ------------LPNVLCVGGSWLTPKEAVKNKDWDTITRLAKEAAA  204 (207)
T ss_pred             ------------CCCEEEEECHHHCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf             ------------89849998814389999974899999999999972


No 206
>TIGR01481 ccpA catabolite control protein A; InterPro: IPR006377   Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [e.g. acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription.
Probab=56.85  E-value=3.8  Score=21.95  Aligned_cols=68  Identities=19%  Similarity=0.325  Sum_probs=38.2

Q ss_pred             CCCEEEECCCCEECCHHHCCCE------EEECCCCCCC-CCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             9872652133200104324433------7316887522-23333355420567012344323787778764210245320
Q gi|254780812|r   67 NFDAAILFSDILVIADALGRNV------RFVENEGPRM-DPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHIT  139 (346)
Q Consensus        67 ~~DaaIlFsDIl~~~ealG~~v------~f~~~~GP~~-~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~p  139 (346)
                      .+|+ |||         ||-.+      .|...+-|++ .=-.  |.....|  ....+|.+-.-||+..+-++  +++.
T Consensus       116 QVDG-iIf---------mG~~Ite~~re~F~rs~~PVVLAGt~--D~~~~~p--SVNIDy~~A~kEav~~l~~~--GhK~  179 (332)
T TIGR01481       116 QVDG-IIF---------MGGEITEKLREEFSRSPVPVVLAGTV--DKENELP--SVNIDYKQATKEAVKELIAK--GHKK  179 (332)
T ss_pred             HCCE-EEE---------CCHHHHHHHHHHHHCCCCCEEEECCC--CCCCCCC--CCCCCHHHHHHHHHHHHHHC--CCCE
T ss_conf             1011-344---------43021089999971289988995354--8654677--31016789999999998633--5826


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             111147999999
Q gi|254780812|r  140 LIGFCGAPWTVA  151 (346)
Q Consensus       140 LIGF~GgP~Tla  151 (346)
                       |+|+|||.+=-
T Consensus       180 -iAfv~G~L~~~  190 (332)
T TIGR01481       180 -IAFVSGSLSDS  190 (332)
T ss_pred             -EEEEECCCCCC
T ss_conf             -88873675711


No 207
>TIGR00430 Q_tRNA_tgt queuine tRNA-ribosyltransferase; InterPro: IPR004803   The queuine tRNA-ribosyltransferase (tgt) 2.4.2.29 from EC catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The archaea have a closely related enzyme (IPR004804 from INTERPRO) that catalyses a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes. ; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0008616 queuosine biosynthetic process.
Probab=56.62  E-value=16  Score=17.51  Aligned_cols=113  Identities=21%  Similarity=0.258  Sum_probs=63.1

Q ss_pred             HHHHHHCCCCEEEECCCCHHHCCHHHH----HHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCC-------C
Q ss_conf             777775498167843831100683567----77612722689999863088623602431100001342014-------7
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAGCLGEHEF----ENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRL-------T  260 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f----~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~-------~  260 (346)
                      +..|-.=|+|+||+||--.+..++-+|    -+-+..+.++-+++-+++.-+-.=.+|.==-+..++++.+.       .
T Consensus       161 ~~IQ~~LGSDIiM~fDeC~p~~ad~~~~~~s~~rt~rWA~~~l~~~~~~~~G~~~~LFgIvQGg~y~dLR~~S~~~L~~~  240 (415)
T TIGR00430       161 MEIQYALGSDIIMAFDECTPYPADYDYAEKSTERTLRWAERCLEAHDRRKEGNKQALFGIVQGGTYEDLRSQSAKGLIEL  240 (415)
T ss_pred             HHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             99998628977987026887886578999999987999999998620247887775346870730488899999999861


Q ss_pred             CC-----CEE-ECCCCC-CHHHHHH----H-CCCEEEECCCCHHHH--CCCHHHHHHHHHHHHHH
Q ss_conf             87-----223-046779-9899997----0-798469688884677--09988999999999997
Q gi|254780812|r  261 DS-----NAI-GLDWSV-PLSFALE----L-QKEGPVQGNLDPMRL--VVGNQVMIDGVNAILDV  311 (346)
Q Consensus       261 g~-----d~i-siD~~~-dl~~a~~----~-~~~~~lqGNldP~~L--~~~~e~i~~~~~~~l~~  311 (346)
                      +.     -.+ ||...- ++.+..+    + ..+       -|..|  .|++|++.+.+.+=+|-
T Consensus       241 df~GYAIGGLisVGEp~~~m~~il~~~~PLlP~d-------KPRYLMGvG~p~~l~~ai~~GiDm  298 (415)
T TIGR00430       241 DFPGYAIGGLISVGEPKDDMLRILEHTAPLLPKD-------KPRYLMGVGTPEDLLDAIRRGIDM  298 (415)
T ss_pred             CCCCCEEECEEECCCCHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCHHHHHHHHHHCCCH
T ss_conf             8895045032412588899888998750357776-------884020548889999999816741


No 208
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=56.23  E-value=9.9  Score=19.00  Aligned_cols=20  Identities=30%  Similarity=0.400  Sum_probs=14.0

Q ss_pred             HHHHHHCCCCEEEECCCCHH
Q ss_conf             77777549816784383110
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAG  211 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag  211 (346)
                      .-.|=+-++|+|--||+++|
T Consensus       299 plLrP~R~VDvIisfD~S~~  318 (430)
T cd07202         299 LVLPPVRNTDLILSFDFSEG  318 (430)
T ss_pred             CCCCCCCCEEEEEEECCCCC
T ss_conf             35587754018998326778


No 209
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases).  Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=55.83  E-value=17  Score=17.37  Aligned_cols=48  Identities=13%  Similarity=-0.035  Sum_probs=36.7

Q ss_pred             CHHHHHHHHHHHHHHHCCCC--C--EEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             98899999999999732599--2--896089763366889999999999730
Q gi|254780812|r  297 GNQVMIDGVNAILDVLGSGP--F--IFNLGHGITPQVDPKNVLDLVKTVRSE  344 (346)
Q Consensus       297 ~~e~i~~~~~~~l~~~~~~~--~--I~nLGhGi~p~tp~eNv~~~v~~vr~~  344 (346)
                      +.+.+++.++++|+.+...+  -  +-.+|+|+.---+.+-.+.++++|++|
T Consensus        86 ~~~~l~~~~~~~L~~A~~~~~~SIAfPaigtG~~g~p~~~~A~~~~~~i~~F  137 (137)
T cd02903          86 ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF  137 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             6999999999999999986997899905456777889999999999999839


No 210
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=55.61  E-value=17  Score=17.34  Aligned_cols=13  Identities=0%  Similarity=0.008  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             8999999999997
Q gi|254780812|r  299 QVMIDGVNAILDV  311 (346)
Q Consensus       299 e~i~~~~~~~l~~  311 (346)
                      ++..+..+++.+.
T Consensus       383 ~~~~~~a~~l~~~  395 (738)
T PRK09517        383 DEALAQARGFART  395 (738)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999981


No 211
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=55.18  E-value=17  Score=17.30  Aligned_cols=28  Identities=14%  Similarity=0.318  Sum_probs=10.8

Q ss_pred             EECCCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf             6024311000013420147872230467
Q gi|254780812|r  242 FISFAKGAGYMLKNYRRLTDSNAIGLDW  269 (346)
Q Consensus       242 iI~f~~g~~~~l~~~~~~~g~d~isiD~  269 (346)
                      ++=..||.+..+..+.+..++++.++|.
T Consensus        17 VLDlGCG~G~ll~~L~~~k~v~~~GvEi   44 (193)
T pfam07021        17 VLDLGCGDGSLLYLLQEEKQVDGRGIEL   44 (193)
T ss_pred             EEEECCCCCHHHHHHHHCCCCCEEEECC
T ss_conf             9983688989999998766987698338


No 212
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain.  DCR in E. coli  is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=55.09  E-value=17  Score=17.29  Aligned_cols=52  Identities=21%  Similarity=0.236  Sum_probs=26.1

Q ss_pred             HHHHHHCCCCEEEECCCCHH----HCCHHH---HHHHH------CCCHHHHHHHHHHHC-CCCEEE
Q ss_conf             77777549816784383110----068356---77761------272268999986308-862360
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAG----CLGEHE---FENYA------ARSVGRIISAVRRKY-PNAKFI  243 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag----~Ls~~~---f~~f~------~p~~kkI~~~ik~~~-~~vpiI  243 (346)
                      ++.-.+||.|.|+|--..+-    .|||..   =++|.      ..+..+|++++++.. ++.|+.
T Consensus       143 A~rA~~AGfDgVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~~vg~d~~v~  208 (353)
T cd02930         143 AALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIII  208 (353)
T ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             999998299989962567614877338754788574579878887999999999999709987499


No 213
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.74  E-value=18  Score=17.25  Aligned_cols=145  Identities=17%  Similarity=0.257  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------
Q ss_conf             37877787642102453201111479999999--961246776524677530137222899999999999999-------
Q gi|254780812|r  121 LPIFQSISILRKKLPNHITLIGFCGAPWTVAS--YMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY-------  191 (346)
Q Consensus       121 ~~v~eAi~~~k~~l~~~~pLIGF~GgP~Tlas--YmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y-------  191 (346)
                      +.-+++|+.+++++++ + +|| +|.=.|...  ..++-|  -+|.       --|-.-..+++.+-+.-+.|       
T Consensus        51 p~a~~~I~~l~~~~p~-~-~vG-aGTV~~~e~~~~a~~aG--A~Fi-------VSP~~~~~v~~~a~~~~i~~iPGv~Tp  118 (212)
T PRK05718         51 PAALEAIRAIRKEVPE-A-LIG-AGTVLNPEQLAQAIEAG--AQFI-------VSPGLTPPLLKACQDGPIPLIPGVNTP  118 (212)
T ss_pred             CHHHHHHHHHHHHCCC-C-EEE-EEEECCHHHHHHHHHCC--CCEE-------ECCCCCHHHHHHHHHCCCCEECCCCCH
T ss_conf             6199999999975898-1-796-53313488999999849--9899-------848998999999998199765786999


Q ss_pred             --HHHHHHCCCCEEEECCCCHHHC-CHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC-CCCHHHHHCCCCCCEEEC
Q ss_conf             --7777754981678438311006-835677761272268999986308862360243110-000134201478722304
Q gi|254780812|r  192 --LIAQIHAGVDVIQIFDTHAGCL-GEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA-GYMLKNYRRLTDSNAIGL  267 (346)
Q Consensus       192 --l~~Qi~aGad~iqIFDs~ag~L-s~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~-~~~l~~~~~~~g~d~isi  267 (346)
                        +..-.++|++.+.+|=  |+.+ .+++            +++++.-.|+++++- .+|. -.++.+|.+..++-    
T Consensus       119 sEi~~A~~~G~~~vK~FP--A~~~gG~~~------------lkal~~p~p~i~~~p-tGGV~~~N~~~yl~~~~v~----  179 (212)
T PRK05718        119 SELMLAMELGLRTFKFFP--AEASGGVKM------------LKALAGPFSDVRFCP-TGGISPANYRDYLALPNVL----  179 (212)
T ss_pred             HHHHHHHHCCCCEEEECC--CCCCCCHHH------------HHHHHCCCCCCEEEE-CCCCCHHHHHHHHCCCCEE----
T ss_conf             999999987999899787--610179999------------999856589982886-5998987899998178869----


Q ss_pred             CCCCCHHHHHHHCCCEEEECC-CCH-HHH-CCCHHHHHHHHHHHHHHH
Q ss_conf             677998999970798469688-884-677-099889999999999973
Q gi|254780812|r  268 DWSVPLSFALELQKEGPVQGN-LDP-MRL-VVGNQVMIDGVNAILDVL  312 (346)
Q Consensus       268 D~~~dl~~a~~~~~~~~lqGN-ldP-~~L-~~~~e~i~~~~~~~l~~~  312 (346)
                                      ++-|. +=| ..+ -+++++|.+.+++.++..
T Consensus       180 ----------------avgGS~l~~~~~v~~~d~~~I~~~a~~~~~~v  211 (212)
T PRK05718        180 ----------------CIGGSWMVPKDAIENGDWDRITRLAREAVALV  211 (212)
T ss_pred             ----------------EEECHHHCCHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             ----------------99873528999986489999999999999973


No 214
>PRK08782 consensus
Probab=54.35  E-value=18  Score=17.21  Aligned_cols=148  Identities=17%  Similarity=0.205  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-----
Q ss_conf             237877787642102453201111479999999---961246776524677530137222899999999999999-----
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVAS---YMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY-----  191 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~Tlas---YmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y-----  191 (346)
                      .+..+++|+.++++.++  -++| +|.=.|...   ..-.|   -+|..       -|-.-..+++.+.+.-+.|     
T Consensus        52 t~~a~~~i~~l~~~~p~--~~vG-aGTV~~~e~~~~a~~aG---A~FiV-------SP~~~~~v~~~a~~~~i~~iPGv~  118 (219)
T PRK08782         52 TPVAIEALAMLKRELPN--IVIG-AGTVLSERQLRQSVDAG---ADFLV-------TPGTPAPLARLLADAPIPAVPGAA  118 (219)
T ss_pred             CCHHHHHHHHHHHHCCC--CEEE-EEEECCHHHHHHHHHCC---CCEEE-------CCCCCHHHHHHHHHCCCCEECCCC
T ss_conf             93399999999986899--4799-99705899999999849---98998-------789979999999981997647859


Q ss_pred             ----HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf             ----7777754981678438311006835677761272268999986308862360243110000134201478722304
Q gi|254780812|r  192 ----LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGL  267 (346)
Q Consensus       192 ----l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isi  267 (346)
                          +..-.++|++.+.+|=  |+.+.+-.|-           ++++.-+|+++++- .+|                ++.
T Consensus       119 TpSEi~~A~~~G~~~vKlFP--A~~~Gg~~~l-----------kal~~pfp~~~f~p-TGG----------------V~~  168 (219)
T PRK08782        119 TPTELLTLMGLGFRVCKLFP--ATAVGGLQML-----------KGLAGPLSELKLCP-TGG----------------ISE  168 (219)
T ss_pred             CHHHHHHHHHCCCCEEEECC--CHHCCCHHHH-----------HHHHCCCCCCEEEE-CCC----------------CCH
T ss_conf             99999999987999899777--3220849999-----------99847699981876-799----------------898


Q ss_pred             CCCCCHHHHHHHCCCEEEEC-CCCHHH-H-CCCHHHHHHHHHHHHHHHC
Q ss_conf             67799899997079846968-888467-7-0998899999999999732
Q gi|254780812|r  268 DWSVPLSFALELQKEGPVQG-NLDPMR-L-VVGNQVMIDGVNAILDVLG  313 (346)
Q Consensus       268 D~~~dl~~a~~~~~~~~lqG-NldP~~-L-~~~~e~i~~~~~~~l~~~~  313 (346)
                      |   ++.+....+.-.++-| ++-|.- + -+++++|.+.+++.++..+
T Consensus       169 ~---N~~~yl~~~~v~~vgGS~l~~~~li~~~dw~~I~~~a~~~~~~v~  214 (219)
T PRK08782        169 T---NAAEFLSQPNVLCIGGSWMVPKDWLAQGQWDKVKESSAKAAAIVR  214 (219)
T ss_pred             H---HHHHHHHCCCEEEEECHHHCCHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             7---899998079939998825389999861999999999999999999


No 215
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.83  E-value=18  Score=17.15  Aligned_cols=46  Identities=24%  Similarity=0.216  Sum_probs=25.8

Q ss_pred             HHHHHHCCCCEEEEC-------------------CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHC-CCCEEE
Q ss_conf             777775498167843-------------------8311006835677761272268999986308-862360
Q gi|254780812|r  192 LIAQIHAGVDVIQIF-------------------DTHAGCLGEHEFENYAARSVGRIISAVRRKY-PNAKFI  243 (346)
Q Consensus       192 l~~Qi~aGad~iqIF-------------------Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~-~~vpiI  243 (346)
                      ++.-.+||.|.|.|-                   |-|+|  |.+.--+|    ..+|++++|+.. ++.|+.
T Consensus       155 A~rA~~AGfDgVEiH~ahGYLl~qFlS~~~N~RtDeYGG--S~ENR~Rf----~lEii~avr~~vg~d~~v~  220 (338)
T cd04733         155 ARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGG--SLENRARL----LLEIYDAIRAAVGPGFPVG  220 (338)
T ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCC--CHHHHHHH----HHHHHHHHHHHHCCCCEEE
T ss_conf             999998399989982365548998629876899685798--98899889----9999999999719988699


No 216
>PRK05414 urocanate hydratase; Provisional
Probab=53.42  E-value=18  Score=17.11  Aligned_cols=177  Identities=14%  Similarity=0.130  Sum_probs=88.5

Q ss_pred             HHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHCCCC---------------------CCCHHHHHHHHCCCHHHHHHHH
Q ss_conf             77787642102453201-1114799999999612467---------------------7652467753013722289999
Q gi|254780812|r  124 FQSISILRKKLPNHITL-IGFCGAPWTVASYMISGGF---------------------IKDHGQNRVFAYQNSRAFNWLL  181 (346)
Q Consensus       124 ~eAi~~~k~~l~~~~pL-IGF~GgP~TlasYmieG~~---------------------sk~~~~~~~~~~~~p~~~~~ll  181 (346)
                      -||++++++......|+ ||++|---+|.-++++-+-                     --.|+....++.++|+.+.+. 
T Consensus       220 deai~~~~~A~~~k~~iSIgl~GNaadl~~~l~~r~i~pDlvTDQTSaHDPl~GY~P~G~t~EEa~~lr~~dP~~f~~~-  298 (558)
T PRK05414        220 DEALALAEEAKAAGEPVSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPQGWTLEEARELRKEDPEKYVKA-  298 (558)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHH-
T ss_conf             9999999999863886068762239999999995799751677765455842355889999999999988798999999-


Q ss_pred             HHHHHHHHHHHHHHH---HCCCCEEEECCCCHHHCCHHHH-----HHHHCCCH-HHHHHHHHHHCCCCEEECCCCCCCCC
Q ss_conf             999999999977777---5498167843831100683567-----77612722-68999986308862360243110000
Q gi|254780812|r  182 DFLSDVSAEYLIAQI---HAGVDVIQIFDTHAGCLGEHEF-----ENYAARSV-GRIISAVRRKYPNAKFISFAKGAGYM  252 (346)
Q Consensus       182 ~~lt~~~~~yl~~Qi---~aGad~iqIFDs~ag~Ls~~~f-----~~f~~p~~-kkI~~~ik~~~~~vpiI~f~~g~~~~  252 (346)
                        ..+....++++..   +.|+-   .||= ++.+-.+-+     +.|..|-. ..++         -|  +||.|.++.
T Consensus       299 --v~~Sm~rHv~Aml~l~~~G~~---~FDY-GNn~r~~A~~aG~~~aF~~PgfVp~yi---------rP--lFc~G~GPF  361 (558)
T PRK05414        299 --AKASMARHVEAMLAFQARGAY---TFDY-GNNIRQMAFDAGVKNAFDFPGFVPAYI---------RP--LFCEGIGPF  361 (558)
T ss_pred             --HHHHHHHHHHHHHHHHHCCCE---EEEC-CHHHHHHHHHCCCCCCCCCCCCHHHHH---------HH--HHHCCCCCC
T ss_conf             --999999999999999987986---8866-668999999758323677876178861---------03--553377873


Q ss_pred             --------HHHHHCCCC---CCEEECCCCCCHHHHHHHCCCEEEECCCCHH-HHCC---CHHHHHHHHHHHHHHHC-CCC
Q ss_conf             --------134201478---7223046779989999707984696888846-7709---98899999999999732-599
Q gi|254780812|r  253 --------LKNYRRLTD---SNAIGLDWSVPLSFALELQKEGPVQGNLDPM-RLVV---GNQVMIDGVNAILDVLG-SGP  316 (346)
Q Consensus       253 --------l~~~~~~~g---~d~isiD~~~dl~~a~~~~~~~~lqGNldP~-~L~~---~~e~i~~~~~~~l~~~~-~~~  316 (346)
                              -+++.. |.   .+++. +......|.+.-..++.+||  .|. ++..   ....+-.+..++++.+. ++|
T Consensus       362 RWValSGdpeDi~~-TD~~~~e~f~-~~~~l~~WI~~A~e~~~fqG--lpARI~wlg~~~R~~~~lafN~~V~~G~l~aP  437 (558)
T PRK05414        362 RWVALSGDPEDIYK-TDAKVKELFP-DDRHLHNWIDMARERILFQG--LPARICWLGLGERARLGLAFNEMVRNGELKAP  437 (558)
T ss_pred             EEEECCCCHHHHHH-HHHHHHHHCC-CHHHHHHHHHHHHHHCCCCC--CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             23553798788899-9999998675-30678899999986121036--75047862730799999999999862961478


Q ss_pred             CEEEEC
Q ss_conf             289608
Q gi|254780812|r  317 FIFNLG  322 (346)
Q Consensus       317 ~I~nLG  322 (346)
                      -++.=.
T Consensus       438 IvigRD  443 (558)
T PRK05414        438 IVIGRD  443 (558)
T ss_pred             EEECCC
T ss_conf             785456


No 217
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to 
Probab=53.24  E-value=19  Score=17.09  Aligned_cols=13  Identities=38%  Similarity=0.340  Sum_probs=6.1

Q ss_pred             HHCCCCEEEECCC
Q ss_conf             7549816784383
Q gi|254780812|r  196 IHAGVDVIQIFDT  208 (346)
Q Consensus       196 i~aGad~iqIFDs  208 (346)
                      +++||-+|+|=|.
T Consensus        94 ~~aG~agi~IED~  106 (243)
T cd00377          94 EEAGAAGIHIEDQ  106 (243)
T ss_pred             HHCCCCEEEECCC
T ss_conf             9749967986587


No 218
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=52.95  E-value=19  Score=17.06  Aligned_cols=95  Identities=22%  Similarity=0.204  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCH-HHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC--CCCCCC-----CHHHH
Q ss_conf             99999997777754981678438311-00683567776127226899998630886236024--311000-----01342
Q gi|254780812|r  185 SDVSAEYLIAQIHAGVDVIQIFDTHA-GCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF--AKGAGY-----MLKNY  256 (346)
Q Consensus       185 t~~~~~yl~~Qi~aGad~iqIFDs~a-g~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f--~~g~~~-----~l~~~  256 (346)
                      |+-+++.++.--++|||++++.=+.- .-.+.+.    ...|.++|.+       .+|++.|  +..++.     .+..+
T Consensus        77 ~~~ai~la~~A~~~Gad~i~~~pP~y~~~~~~~~----l~~yf~~va~-------~lPi~lYn~P~~tg~~l~~~~~~~L  145 (279)
T cd00953          77 LEESIELARAAKSFGIYAIASLPPYYFPGIPEEW----LIKYFTDISS-------PYPTFIYNYPKATGYDINARMAKEI  145 (279)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHH----HHHHHHHHHH-------HCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf             9999999999997799989976886789999999----9999999985-------0987699677535888899999999


Q ss_pred             HCCCCCCEEEC-CCCCCHHHHH---HHCCCEEEECCCCH
Q ss_conf             01478722304-6779989999---70798469688884
Q gi|254780812|r  257 RRLTDSNAIGL-DWSVPLSFAL---ELQKEGPVQGNLDP  291 (346)
Q Consensus       257 ~~~~g~d~isi-D~~~dl~~a~---~~~~~~~lqGNldP  291 (346)
                      .+. ..+++++ |+.-|+....   ..+++..+...-|.
T Consensus       146 ~~~-~~~v~giKds~~d~~~~~~~~~~~~~~~v~~G~d~  183 (279)
T cd00953         146 KKA-GGDIIGVKDTNEDISHMLEYKRLVPDFKVYSGPDS  183 (279)
T ss_pred             HHC-CCCEEEEECCCCCHHHHHHHHHHCCCCEEECCCHH
T ss_conf             817-99889997387699999999984899478569579


No 219
>KOG0259 consensus
Probab=52.62  E-value=8.5  Score=19.46  Aligned_cols=32  Identities=22%  Similarity=0.161  Sum_probs=25.8

Q ss_pred             CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             798469688884677099889999999999973
Q gi|254780812|r  280 QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVL  312 (346)
Q Consensus       280 ~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~  312 (346)
                      ++...+||-| |.+|-.++++..+.+.++|+.-
T Consensus       310 ~p~TiiQ~Al-P~IL~kTp~efF~k~~~~lk~n  341 (447)
T KOG0259         310 GPATIIQGAL-PDILEKTPEEFFDKKLSFLKSN  341 (447)
T ss_pred             CCCHHHHHHH-HHHHHHCHHHHHHHHHHHHHHH
T ss_conf             9508598775-8898748399999999998762


No 220
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family; InterPro: IPR011929    Members of this family show sequence similarity to members of the NlpC/P60 family, described by Anantharaman and Aravind . The NlpC/P60 family includes a number of characterised bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes..
Probab=52.48  E-value=6.3  Score=20.38  Aligned_cols=24  Identities=38%  Similarity=0.605  Sum_probs=20.3

Q ss_pred             HHHCCCCCCCCCC----H--------HHHHCCCCCH
Q ss_conf             9966998999976----1--------4623123457
Q gi|254780812|r   10 EVLQGNVINPPPI----W--------LMRQAGRYLP   33 (346)
Q Consensus        10 ~al~g~~~~r~PV----W--------~MrQAGrylp   33 (346)
                      |+|-|+..+-||+    |        ||..|+|||=
T Consensus        35 RaLyG~EPE~PPpYaPDWAE~G~~e~L~~Aa~R~lv   70 (135)
T TIGR02219        35 RALYGEEPEAPPPYAPDWAEVGGGELLLEAALRHLV   70 (135)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             530588888300004751414888368888865512


No 221
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl    5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and    metabolism]
Probab=52.35  E-value=19  Score=16.99  Aligned_cols=51  Identities=22%  Similarity=0.264  Sum_probs=33.4

Q ss_pred             CCEEECCCCC----------CHHHHHH--HCCCEEEECCCCHHHHCCC-HHHHHHHHHHHHHHHC
Q ss_conf             7223046779----------9899997--0798469688884677099-8899999999999732
Q gi|254780812|r  262 SNAIGLDWSV----------PLSFALE--LQKEGPVQGNLDPMRLVVG-NQVMIDGVNAILDVLG  313 (346)
Q Consensus       262 ~d~isiD~~~----------dl~~a~~--~~~~~~lqGNldP~~L~~~-~e~i~~~~~~~l~~~~  313 (346)
                      .+.+|+||+.          +.++..+  +.+..++.||+ |..|..| -+++.+...+++++.+
T Consensus       220 lEl~g~D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~-p~vlRESLL~~vfe~ger~V~a~k  283 (361)
T COG1759         220 LELLGIDRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNI-PVVLRESLLPKVFEMGERFVEATK  283 (361)
T ss_pred             EEEEEEEHHEECCCHHHCCCCHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4576300201316212115787899745899528998785-132477778999999999999998


No 222
>pfam00838 TCTP Translationally controlled tumour protein.
Probab=52.22  E-value=8.3  Score=19.55  Aligned_cols=62  Identities=15%  Similarity=0.271  Sum_probs=39.7

Q ss_pred             HHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHH
Q ss_conf             777549816784383110068356777612722689999863088623602431100001342
Q gi|254780812|r  194 AQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNY  256 (346)
Q Consensus       194 ~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~  256 (346)
                      .+.+.|+|+|-=|.=.-...+.+.|..|...|+|++.+.+++..|.- +-.|-+++......+
T Consensus        61 ~~~~~vvDIV~~~rLqet~f~Kk~y~~yiK~YmK~v~~~L~e~~pe~-V~~Fk~~a~~~vK~i  122 (166)
T pfam00838        61 ETVERVVDIVLNFRLQETSFDKKSFKTYIKGYMKAVKAKLQEENPER-VSLFKKNIQGWVKSL  122 (166)
T ss_pred             CCCEEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHH
T ss_conf             67269888877170067478999999999999999999876519678-999999889999987


No 223
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=51.73  E-value=20  Score=16.93  Aligned_cols=69  Identities=12%  Similarity=0.247  Sum_probs=40.2

Q ss_pred             CCCEEECCCCCCHHHHHHH-CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCE--EEECCCCCCCCCHHHHHHH
Q ss_conf             8722304677998999970-798469688884677099889999999999973259928--9608976336688999999
Q gi|254780812|r  261 DSNAIGLDWSVPLSFALEL-QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFI--FNLGHGITPQVDPKNVLDL  337 (346)
Q Consensus       261 g~d~isiD~~~dl~~a~~~-~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I--~nLGhGi~p~tp~eNv~~~  337 (346)
                      |-...++||..    ++++ .....|-|+|+|       +.|.+    .+. ..-+||-  .|.|=...-.=+++.|++|
T Consensus       136 GGtG~~fdW~~----l~~~~~~~~~LAGGL~p-------~NV~~----a~~-~~~~p~gVDvsSGVE~~G~KD~~Ki~~f  199 (207)
T PRK13958        136 GGTGQTYDWTI----LKHIKDIPYLIAGGINS-------ENIQT----VNQ-LKLSHQGYDLASGIEVNGRKDIEKMTAI  199 (207)
T ss_pred             CCCCCCCCHHH----HHHCCCCCEEEEECCCH-------HHHHH----HHH-CCCCCCEEECCCCCCCCCCCCHHHHHHH
T ss_conf             99878668788----86255898699946988-------99999----996-3579998982165678898799999999


Q ss_pred             HHHHHHCC
Q ss_conf             99997306
Q gi|254780812|r  338 VKTVRSEK  345 (346)
Q Consensus       338 v~~vr~~~  345 (346)
                      |+.||+.|
T Consensus       200 i~~vk~~~  207 (207)
T PRK13958        200 VNIVKGDR  207 (207)
T ss_pred             HHHHHCCC
T ss_conf             99985789


No 224
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=51.28  E-value=20  Score=16.88  Aligned_cols=59  Identities=15%  Similarity=0.115  Sum_probs=31.3

Q ss_pred             HHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH
Q ss_conf             776127226899998630886236024311000013420147872230467799899997
Q gi|254780812|r  219 ENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE  278 (346)
Q Consensus       219 ~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~  278 (346)
                      -+...+..+++++.+++.+-.-|+++-.+|. +.-.++.+..|+|+-.-|-..-.++|+.
T Consensus       165 MTttm~~~~~viE~L~eeGiRd~v~v~vGGA-pvtq~~a~~iGAD~~~~dAs~Av~~ak~  223 (227)
T COG5012         165 MTTTMIGMKDVIELLKEEGIRDKVIVMVGGA-PVTQDWADKIGADAYAEDASDAVKKAKA  223 (227)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEEECCC-CCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             7887997999999999768854748852686-2468999971877567677889999999


No 225
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992    This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=51.12  E-value=20  Score=16.86  Aligned_cols=71  Identities=13%  Similarity=0.138  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHCCCCEEEECCCC--HHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC-CCCHHHHHCCCCCCE
Q ss_conf             9999777775498167843831--1006835677761272268999986308862360243110-000134201478722
Q gi|254780812|r  188 SAEYLIAQIHAGVDVIQIFDTH--AGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA-GYMLKNYRRLTDSNA  264 (346)
Q Consensus       188 ~~~yl~~Qi~aGad~iqIFDs~--ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~-~~~l~~~~~~~g~d~  264 (346)
                      ..+|...-++||+|.+-|==|-  |..+|++.-     +++ .+.+.+.+.  ++|+|.=.|.+ ..-| .|++ ||+.+
T Consensus       145 ~~~~a~~vv~AG~DLLvIqgT~vSaehv~~e~~-----E~L-nLk~fi~eL--DvPVv~Ggv~~Y~~AL-hLMR-tGAag  214 (376)
T TIGR01304       145 ASKLAPVVVEAGADLLVIQGTVVSAEHVSSESG-----EPL-NLKKFIQEL--DVPVVAGGVVTYTTAL-HLMR-TGAAG  214 (376)
T ss_pred             HHHHHHHHHHHCCCEEEEHHHHHHHEEECCCCC-----CCH-HHHHHHHHC--CCCEEECCCCCHHHHH-HHHH-HCCEE
T ss_conf             678889999717300420012320100468888-----721-488897548--9887883853088999-9863-01137


Q ss_pred             EECC
Q ss_conf             3046
Q gi|254780812|r  265 IGLD  268 (346)
Q Consensus       265 isiD  268 (346)
                      +=|.
T Consensus       215 vlVG  218 (376)
T TIGR01304       215 VLVG  218 (376)
T ss_pred             EEEC
T ss_conf             8864


No 226
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810    An Escherichia coli gene designated purU has been identified and characterised. The gene codes for a 280-amino-acid protein, PurU (P37051 from SWISSPROT, 3.5.1.10 from EC). PurU is an enzyme that catalyses the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate ,.  10-formyltetrahydrofolate + H(2)O = formate +tetrahydrofolate     Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer of 32kDa subunits, is activated by methionine and inhibited by glycine. Heterotropic cooperativity is observed for activation by methionine in the presence of glycine and for inhibition by glycine in the presence of methionine. These results suggest that formyl-FH4 hydrolase is a regulatory enzyme whose main function is to balance the pools of FH4 and C1-FH4 in response to changing growth conditions. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. ; GO: 0008864 formyltetrahydrofolate deformylase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=50.90  E-value=18  Score=17.12  Aligned_cols=41  Identities=7%  Similarity=0.080  Sum_probs=29.8

Q ss_pred             CCEEECCCCCCCCCHHHHHCCCCC----CEEECCCCCCHHHHHHHCCCE
Q ss_conf             623602431100001342014787----223046779989999707984
Q gi|254780812|r  239 NAKFISFAKGAGYMLKNYRRLTDS----NAIGLDWSVPLSFALELQKEG  283 (346)
Q Consensus       239 ~vpiI~f~~g~~~~l~~~~~~~g~----d~isiD~~~dl~~a~~~~~~~  283 (346)
                      ||++|+   -|.|+..+-.+. |+    |++.||++-+.+...+.|.++
T Consensus       223 GVKiIG---ATAHYVt~~LDe-GPIIeQDv~rVdH~~~~e~l~r~GrDi  267 (294)
T TIGR00655       223 GVKIIG---ATAHYVTEELDE-GPIIEQDVVRVDHTDNVEDLIRAGRDI  267 (294)
T ss_pred             CCEEEE---CCEEEECCCCCC-CCCEEECCEEECCCCCHHHHHHCCCCH
T ss_conf             833770---200100335788-890253304527667778998606751


No 227
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.81  E-value=6.2  Score=20.42  Aligned_cols=182  Identities=14%  Similarity=0.167  Sum_probs=80.7

Q ss_pred             HHHHHHHHCCCCCCCCCCHHHHHC---CCCCHHHHHHHHHCCCHHHH--HCCHHHHHHHHHHHHHHCC---------CCE
Q ss_conf             579999966998999976146231---23457999997615538998--4279999998721287629---------872
Q gi|254780812|r    5 KQKILEVLQGNVINPPPIWLMRQA---GRYLPEYRQIRKKFKNFLDM--CYTPEYTVELTLQPIRRYN---------FDA   70 (346)
Q Consensus         5 ~~~~l~al~g~~~~r~PVW~MrQA---Grylpey~~~r~~~~~f~~~--~~~pela~evtl~p~~r~~---------~Da   70 (346)
                      +++||+-++.-+.-+--+=.|.++   |||+||+.++...++  +|+  ++|.+--+=-++.-+++|.         +-.
T Consensus       397 ~~~Fl~il~~~~~~~r~l~~Mn~~GVLgrylPew~~Ivg~MQ--fdlfH~YTVDeH~lr~v~~l~~~a~~~~~~~hPl~~  474 (867)
T COG2844         397 RRLFLSILRSPNAIRRTLRPMNRYGVLGRYLPEWGKIVGLMQ--FDLFHIYTVDEHTLRVVLKLARFARGEARHEHPLAS  474 (867)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCC--CCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf             999999983898578999977774348875533776540246--674301224299999999888750121233475267


Q ss_pred             EEECCCCEECCHHHCCCE---EEECCCC-C--CCCCCCCHHHHHC-CCCCHHHHHHHHH-----HHHHHHHHHHCCCCCC
Q ss_conf             652133200104324433---7316887-5--2223333355420-5670123443237-----8777876421024532
Q gi|254780812|r   71 AILFSDILVIADALGRNV---RFVENEG-P--RMDPITTQEIYLL-NPNIDLFLNYLLP-----IFQSISILRKKLPNHI  138 (346)
Q Consensus        71 aIlFsDIl~~~ealG~~v---~f~~~~G-P--~~~p~~~~~~~~~-~~~~~~~~~~l~~-----v~eAi~~~k~~l~~~~  138 (346)
                      .|+ +- +-..|+|=...   ++.+|.| +  ++.--.-...... -.+.. ..+-+..     ..=++.--|.-++|..
T Consensus       475 ~l~-~~-~~~~elLylAaLfHDIaKGRggDHs~lGA~~a~~fc~~hGL~~~-e~~lvaWLVe~HLlMS~tAQrrDl~Dp~  551 (867)
T COG2844         475 QLM-PR-LEKRELLYLAALFHDIAKGRGGDHSILGAEDARRFCERHGLNSR-ETELVAWLVENHLLMSVTAQRRDLNDPK  551 (867)
T ss_pred             HHC-CC-CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             650-37-88731999999988862378986677619999999998299877-7689999999877767888761789869


Q ss_pred             HHHHHH---HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             011114---7999999996124677652467753013722289999999999999977777549
Q gi|254780812|r  139 TLIGFC---GAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG  199 (346)
Q Consensus       139 pLIGF~---GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG  199 (346)
                      .+.-|+   +.+=.| .|+.       .+..-.---.+|..|+.-...+.+.+......|...|
T Consensus       552 vI~~Fa~~Vq~~~rL-~~L~-------~LTVaDI~AtgP~vWN~WK~sLLr~Ly~~T~~~l~gg  607 (867)
T COG2844         552 VIDAFAEAVQDEERL-RYLL-------VLTVADIRATGPGVWNSWKASLLRELYYATERVLRGG  607 (867)
T ss_pred             HHHHHHHHHCCHHHH-HHHH-------HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999985688998-8999-------9887765066865037889999999999999997268


No 228
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=50.68  E-value=20  Score=16.82  Aligned_cols=68  Identities=13%  Similarity=0.128  Sum_probs=35.5

Q ss_pred             HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCC-HHHHHHHHHHHCCCCEEECCCCCCC--CCHHHHHCCCCCCEEECC
Q ss_conf             7777754981678438311006835677761272-2689999863088623602431100--001342014787223046
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARS-VGRIISAVRRKYPNAKFISFAKGAG--YMLKNYRRLTDSNAIGLD  268 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~-~kkI~~~ik~~~~~vpiI~f~~g~~--~~l~~~~~~~g~d~isiD  268 (346)
                      ++.--++||+.|.|--    ---.+.|.   -+. .-..+..+++.. ++|+|.- ++..  .....+.+.||+|.+-+.
T Consensus       154 ~~~~~~~G~~~ltvH~----RT~~q~y~---~~~~dw~~i~~~~~~~-~iPvi~N-GdI~s~~d~~~~~~~tg~dgvMiG  224 (312)
T PRK10550        154 ADAVQQAGATELVVHG----RTKEQGYR---AEHIDWQAIGEIRQRL-TIPVIAN-GEIWDWQSAQQCMAISGCDAVMIG  224 (312)
T ss_pred             HHHHHHCCCCEEEEEC----CCHHHCCC---CCCCCHHHHHHHHHHC-CCCEEEE-CCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf             9999973998799905----52653589---9834899999999748-9989970-795999999999871489999965


No 229
>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151   AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=50.46  E-value=4.1  Score=21.69  Aligned_cols=201  Identities=12%  Similarity=0.127  Sum_probs=84.5

Q ss_pred             EEEECCCCCCCCCCC-CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             373168875222333-3355420567012344323787778764210245320111147999999996124677652467
Q gi|254780812|r   88 VRFVENEGPRMDPIT-TQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQN  166 (346)
Q Consensus        88 v~f~~~~GP~~~p~~-~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~  166 (346)
                      +-|+.+.-|+-+... +.......|+..   +.+..-...|..+++++. -+-...+.-+=+++|.-++     .+|...
T Consensus       290 ~~l~~~G~~k~~~~~~~k~~~~~~p~l~---~~~~~~~~~~~~~~~r~~-~~~~~~~t~AAL~lA~~l~-----~~y~~~  360 (1190)
T TIGR02784       290 AFLTSKGEPKSASAVLKKAIQKSLPDLA---EALEDAASRVEALRERLR-ALRMAERTLAALRLAARLL-----QRYAAL  360 (1190)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-----HHHHHH
T ss_conf             8740688766303465456565458999---999999999999998999-9999998899999999999-----999999


Q ss_pred             HHH--HCCCHHHHHHHHHHHHH-HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC--C--
Q ss_conf             753--01372228999999999-9999977777549816784383110068356777612722689999863088--6--
Q gi|254780812|r  167 RVF--AYQNSRAFNWLLDFLSD-VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP--N--  239 (346)
Q Consensus       167 ~~~--~~~~p~~~~~ll~~lt~-~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~--~--  239 (346)
                      |+-  ..+-.+++++-...|++ ....++..-.+-|+|=|= -| -|--=||+|+.     -++.+.+++-.-..  +  
T Consensus       361 K~~rG~LDF~DLI~rt~~LL~r~~~g~WV~YKLD~GiDHIL-vD-EAQDTSP~QW~-----iI~~LA~eFF~GegAR~~s  433 (1190)
T TIGR02784       361 KKARGLLDFDDLIERTVALLARPSAGAWVHYKLDRGIDHIL-VD-EAQDTSPEQWE-----IIQALAEEFFSGEGARSGS  433 (1190)
T ss_pred             HHHCCCCCHHHHHHHHHHHCCCCCCCCCEEHCCCCCCCEEE-EC-CHHCCCHHHHH-----HHHHHHHHHCCCCCCCCCC
T ss_conf             87478987677999999970889867430010177504377-12-20048865899-----9999987630686402467


Q ss_pred             ---CEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCEE--EECCCCHHHHC---CCHHHHHHHHHHHHHH
Q ss_conf             ---236024311000013420147872230467799899997079846--96888846770---9988999999999997
Q gi|254780812|r  240 ---AKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGP--VQGNLDPMRLV---VGNQVMIDGVNAILDV  311 (346)
Q Consensus       240 ---vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~--lqGNldP~~L~---~~~e~i~~~~~~~l~~  311 (346)
                         .---.|.-|- .+..-|+-+ |++==.++      ..+....+.+  .-=++.+..|.   -|..+|.+.|..+.+.
T Consensus       434 Gr~~~RTiFAVGD-eKQSIYSFQ-GA~P~~F~------~~~~~~~~k~~~~~~~f~~~~L~~SFRST~dvL~~VD~vF~d  505 (1190)
T TIGR02784       434 GREVERTIFAVGD-EKQSIYSFQ-GADPERFA------EERRLFSRKVRAVGRKFEDVSLTYSFRSTPDVLAAVDLVFAD  505 (1190)
T ss_pred             CCCCCCCEEEECC-EEECCCCCC-CCCHHHHH------HHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCC
T ss_conf             6224532688767-310445456-77556899------998899999986100267730202305848999999887448


Q ss_pred             H
Q ss_conf             3
Q gi|254780812|r  312 L  312 (346)
Q Consensus       312 ~  312 (346)
                      =
T Consensus       506 P  506 (1190)
T TIGR02784       506 P  506 (1190)
T ss_pred             C
T ss_conf             2


No 230
>PRK06857 consensus
Probab=50.17  E-value=21  Score=16.76  Aligned_cols=147  Identities=16%  Similarity=0.222  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-----
Q ss_conf             237877787642102453201111479999999---961246776524677530137222899999999999999-----
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVAS---YMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY-----  191 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~Tlas---YmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y-----  191 (346)
                      .+..+++|+.++++.++  -+|| +|.=.|...   ..-.|   -+|.-       -|-....+++.+.+.-+-|     
T Consensus        47 t~~a~~~I~~l~~~~p~--~~vG-aGTV~~~e~~~~a~~aG---A~FiV-------SP~~~~~v~~~a~~~~i~~iPGv~  113 (209)
T PRK06857         47 SAAAAEAIRLLREAYPD--MLIG-AGTVLTPEQVDAAKEAG---ADFIV-------SPGFNPNTVKYCQQLNIPIVPGVN  113 (209)
T ss_pred             CCCHHHHHHHHHHHCCC--CEEE-EEECCCHHHHHHHHHCC---CCEEE-------CCCCCHHHHHHHHHCCCCEECCCC
T ss_conf             93299999999975899--4899-99376799999999839---99999-------089999999999974996547879


Q ss_pred             ----HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf             ----7777754981678438311006835677761272268999986308862360243110000134201478722304
Q gi|254780812|r  192 ----LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGL  267 (346)
Q Consensus       192 ----l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isi  267 (346)
                          +..-.++|++.+.+|=. ....++.+.            +.++.-+|+++++- .+|.                +.
T Consensus       114 TpsEi~~A~~~G~~~vKlFPA-~~~gG~~~l------------kal~~p~p~~~~~p-tGGV----------------~~  163 (209)
T PRK06857        114 NPSLVEQALEMGLTTLKFFPA-EASGGVNML------------KALLAPYPNLQIMP-TGGI----------------NP  163 (209)
T ss_pred             CHHHHHHHHHCCCCEEEECCC-CCCCCHHHH------------HHHHCCCCCCEEEE-CCCC----------------CH
T ss_conf             999999999879998997866-212669999------------99865389980996-4898----------------88


Q ss_pred             CCCCCHHHHHHHCCCEEEECC-CCHH-HH-CCCHHHHHHHHHHHHHHH
Q ss_conf             677998999970798469688-8846-77-099889999999999973
Q gi|254780812|r  268 DWSVPLSFALELQKEGPVQGN-LDPM-RL-VVGNQVMIDGVNAILDVL  312 (346)
Q Consensus       268 D~~~dl~~a~~~~~~~~lqGN-ldP~-~L-~~~~e~i~~~~~~~l~~~  312 (346)
                      |   ++.+..+.+.-.+..|. +=|. .+ -+++++|.+.+++.++..
T Consensus       164 ~---N~~~yl~~~~v~~~gGS~l~~~~~i~~~d~~~I~~~a~~~~~~v  208 (209)
T PRK06857        164 S---NIKDYLAIPNVVACGGTWMVPKKLIDNGNWDEIGRLVREVVALV  208 (209)
T ss_pred             H---HHHHHHCCCCEEEEECHHHCCHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             7---89999859988999893658999997289999999999999973


No 231
>TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263   Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.   This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process.
Probab=49.97  E-value=21  Score=16.74  Aligned_cols=86  Identities=12%  Similarity=0.111  Sum_probs=38.2

Q ss_pred             HHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHH--CCCCEEECC---CCC-CCCC---HHHHHCCCC
Q ss_conf             9777775498167843831100683567776127226899998630--886236024---311-0000---134201478
Q gi|254780812|r  191 YLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRK--YPNAKFISF---AKG-AGYM---LKNYRRLTD  261 (346)
Q Consensus       191 yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~--~~~vpiI~f---~~g-~~~~---l~~~~~~~g  261 (346)
                      ..+.--+.|||+++.-=       | +   |-+|..+=+.++.|.-  .-+.|+|.|   +|- .+-.   ...+++. .
T Consensus        85 l~~~a~~~G~dg~L~vt-------P-y---YNKP~q~Gl~~HFkaia~~~~lPiiLYNvPsRTg~~l~peTv~rLA~~-~  152 (288)
T TIGR00674        85 LTKFAEKLGVDGFLVVT-------P-Y---YNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLEPETVKRLAEE-P  152 (288)
T ss_pred             HHHHHHHCCCCEEECCC-------C-C---CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCC-C
T ss_conf             99999868956884588-------7-5---518882138999999998716988984287641017862899997301-6


Q ss_pred             CCEEEC-CCCCCHHHHHH----HC-CCE-EEECC
Q ss_conf             722304-67799899997----07-984-69688
Q gi|254780812|r  262 SNAIGL-DWSVPLSFALE----LQ-KEG-PVQGN  288 (346)
Q Consensus       262 ~d~isi-D~~~dl~~a~~----~~-~~~-~lqGN  288 (346)
                      -+++++ |..-|++.+-+    .+ ++. ++.||
T Consensus       153 ~NI~aiKEa~g~l~~~~~i~~~~p~~dF~vlsGD  186 (288)
T TIGR00674       153 NNIVAIKEATGNLERISEIKAITPDDDFVVLSGD  186 (288)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf             7706887268888999999986689853888478


No 232
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=49.34  E-value=21  Score=16.67  Aligned_cols=45  Identities=20%  Similarity=0.333  Sum_probs=22.2

Q ss_pred             HHHCCCCEEEECCCCH----HHCCHH------HH---HHHHCCCHHHHHHHHHHHCCC
Q ss_conf             7754981678438311----006835------67---776127226899998630886
Q gi|254780812|r  195 QIHAGVDVIQIFDTHA----GCLGEH------EF---ENYAARSVGRIISAVRRKYPN  239 (346)
Q Consensus       195 Qi~aGad~iqIFDs~a----g~Ls~~------~f---~~f~~p~~kkI~~~ik~~~~~  239 (346)
                      -.+||.|.|+|-=..+    ..|||-      .|   -+==..+..+|++++++..+.
T Consensus       168 A~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSleNR~Rf~~Eii~aVr~avg~  225 (362)
T PRK10605        168 AREAGFDLVELHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEVVDAGIAEWGA  225 (362)
T ss_pred             HHHCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9983999899702473699973897667898878997899988999999999997398


No 233
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=49.26  E-value=21  Score=16.67  Aligned_cols=21  Identities=29%  Similarity=0.314  Sum_probs=10.9

Q ss_pred             HHHHHHHHHCCCCEEEECCCC
Q ss_conf             999777775498167843831
Q gi|254780812|r  189 AEYLIAQIHAGVDVIQIFDTH  209 (346)
Q Consensus       189 ~~yl~~Qi~aGad~iqIFDs~  209 (346)
                      .+.+++..++|||.|.++.|.
T Consensus       172 ~~ia~~~~~~gadgvv~~Nt~  192 (301)
T PRK07259        172 VEIAKAAEEAGADGLSLINTL  192 (301)
T ss_pred             HHHHHHHHHCCCCEEEEECCC
T ss_conf             999999997599889995677


No 234
>PRK07695 transcriptional regulator TenI; Provisional
Probab=49.21  E-value=21  Score=16.66  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=15.1

Q ss_pred             HHHHHHCCCCEEEECCCCHHHCCHHHHHH
Q ss_conf             77777549816784383110068356777
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAGCLGEHEFEN  220 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~  220 (346)
                      +++.+++|++.||+-+-.   ++.+++.+
T Consensus        20 v~~al~~Gv~~iQlR~K~---~s~~e~~~   45 (202)
T PRK07695         20 VAMQIESEVDYIHIRERE---KSAKELYE   45 (202)
T ss_pred             HHHHHHCCCCEEEECCCC---CCHHHHHH
T ss_conf             999998799999988999---79999999


No 235
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=49.02  E-value=22  Score=16.64  Aligned_cols=90  Identities=13%  Similarity=0.109  Sum_probs=48.9

Q ss_pred             HCCCHHHHHHHHHHHHH-------------------HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHH
Q ss_conf             01372228999999999-------------------99999777775498167843831100683567776127226899
Q gi|254780812|r  170 AYQNSRAFNWLLDFLSD-------------------VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRII  230 (346)
Q Consensus       170 ~~~~p~~~~~ll~~lt~-------------------~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~  230 (346)
                      |.++|+.+.+++..+.+                   ...++++.--++||++|.|--    -...+.   |.-+..-..+
T Consensus       114 Ll~~p~~~~~iv~a~~~a~~iPVTvKiRlG~~~~~~~~~~~~~~~e~aG~~~itvHg----RT~~q~---y~g~adw~~i  186 (321)
T PRK10415        114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHG----RTRACL---FNGEAEYDSI  186 (321)
T ss_pred             HHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEH----HHHHHH---HCCCCCHHHH
T ss_conf             633989999999999734487469998468885224399999999856988999972----213443---1699877999


Q ss_pred             HHHHHHCCCCEEECCCCCCC--CCHHHHHCCCCCCEEECC
Q ss_conf             99863088623602431100--001342014787223046
Q gi|254780812|r  231 SAVRRKYPNAKFISFAKGAG--YMLKNYRRLTDSNAIGLD  268 (346)
Q Consensus       231 ~~ik~~~~~vpiI~f~~g~~--~~l~~~~~~~g~d~isiD  268 (346)
                      ..+|+.. ++|+|. .+|..  .....+.+.+|+|++=+.
T Consensus       187 ~~vk~~~-~iPvi~-NGDI~~~~da~~~l~~tg~dgvMig  224 (321)
T PRK10415        187 RAVKQKV-SIPVIA-NGDITDPLKARAVLDYTGADALMIG  224 (321)
T ss_pred             HHHHHCC-CCCEEE-CCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf             9998547-997896-5891999999999986299999975


No 236
>PRK13122 consensus
Probab=48.95  E-value=22  Score=16.63  Aligned_cols=52  Identities=15%  Similarity=0.252  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             23787778764210245320111147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG  199 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG  199 (346)
                      +..+++-++..|++.  ++|++        |++|.                  ||     ++..   -.-.|++...++|
T Consensus        60 ~~~~~~~l~~~r~~~--~~piv--------lM~Y~------------------N~-----i~~~---G~~~F~~~~~~~G  103 (242)
T PRK13122         60 IDYIFNQLEKHGDQI--KCNYV--------LMTYY------------------NI-----ICHY---GEQAFFEKCRDTG  103 (242)
T ss_pred             HHHHHHHHHHHCCCC--CCCEE--------EEEEC------------------HH-----HHHH---CHHHHHHHHHHCC
T ss_conf             999999999731367--98779--------99851------------------69-----8872---7999999998769


Q ss_pred             CCEEEECC
Q ss_conf             81678438
Q gi|254780812|r  200 VDVIQIFD  207 (346)
Q Consensus       200 ad~iqIFD  207 (346)
                      +|.+-|-|
T Consensus       104 vdGvIipD  111 (242)
T PRK13122        104 VYGLIIPD  111 (242)
T ss_pred             CCEEECCC
T ss_conf             98677789


No 237
>PTZ00151 translationally controlled tumor protein; Provisional
Probab=48.49  E-value=10  Score=18.96  Aligned_cols=60  Identities=18%  Similarity=0.407  Sum_probs=35.5

Q ss_pred             HHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHH
Q ss_conf             7549816784383110068356777612722689999863088623602431100001342
Q gi|254780812|r  196 IHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNY  256 (346)
Q Consensus       196 i~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~  256 (346)
                      ++.|+|+|-=|-=--...+.+.|..|...|+|+|.+.+++..|.- +=.|-+++...+..+
T Consensus        67 ~~~vvDIV~~~rLqEt~f~Kk~y~~yiK~YmK~v~~kLee~~per-V~~Fk~~a~~~vK~i  126 (173)
T PTZ00151         67 VEMVIDIVDAFQLQSTPFTKKEYSSYIKKYIQRIVAYLEEKNPDR-VEPFKTKAQPFVKHV  126 (173)
T ss_pred             CEEEEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHH
T ss_conf             069889877371034588999999999999999999986329889-999999889999999


No 238
>pfam10498 IFT57 Intra-flagellar transport protein 57. Eukaryotic cilia and flagella are specialized organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bidirectional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated. This protein is known as Huntington-interacting protein-1 in humans.
Probab=48.45  E-value=4.3  Score=21.58  Aligned_cols=40  Identities=5%  Similarity=0.177  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8999999999997325992896089763366889999999999730
Q gi|254780812|r  299 QVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSE  344 (346)
Q Consensus       299 e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~~  344 (346)
                      .+|-++..++-..+..+      |--++-.+|+.+|+.-+..+|+.
T Consensus       300 ~~I~eeLe~vK~emeer------g~~mtD~sPl~~IK~Ai~kLk~E  339 (355)
T pfam10498       300 NEISEELEQVKQEMEER------GASMSDGSPLVKIKQAITKLKEE  339 (355)
T ss_pred             HHHHHHHHHHHHHHHHH------CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999999999985------24567887799999999999999


No 239
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=48.09  E-value=22  Score=16.55  Aligned_cols=27  Identities=19%  Similarity=0.290  Sum_probs=11.0

Q ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             599289608976336688999999999973
Q gi|254780812|r  314 SGPFIFNLGHGITPQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       314 ~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~  343 (346)
                      +.|+|+-.--+   +.+.+..+.-++.+|+
T Consensus       252 ~~p~IlEtP~~---~~~~~~~~~~i~~lr~  278 (279)
T cd00019         252 NIPLILETPSE---NRDAAKIKKEIKLLRK  278 (279)
T ss_pred             CCCEEEECCCC---CCCHHHHHHHHHHHHH
T ss_conf             98789968999---8760689999999962


No 240
>KOG3045 consensus
Probab=47.82  E-value=16  Score=17.50  Aligned_cols=152  Identities=18%  Similarity=0.211  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC--CCEEEEC--CCCHHHCCHH----HHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             289999999999999977777549--8167843--8311006835----6777612722689999863088623602431
Q gi|254780812|r  176 AFNWLLDFLSDVSAEYLIAQIHAG--VDVIQIF--DTHAGCLGEH----EFENYAARSVGRIISAVRRKYPNAKFISFAK  247 (346)
Q Consensus       176 ~~~~ll~~lt~~~~~yl~~Qi~aG--ad~iqIF--Ds~ag~Ls~~----~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~  247 (346)
                      +..++...|.-.--.|++.|.-+|  -.+.++|  ||.|=.+=.+    +-..|-..++..|++.|+.+-.++-|.-|.|
T Consensus       110 l~~km~~rL~ggrFR~lNEqLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GC  189 (325)
T KOG3045         110 LQAKMKKRLDGGRFRYLNEQLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGC  189 (325)
T ss_pred             HHHHHHHHHCCCCEEHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             99999986225511202244405775889998851909999999999999871788829999999971767647885366


Q ss_pred             CCCCCHHHHHCCCCCCEEECC-----CCCCHHHHHHHCCCEEEE-CCCCHH----HHCC-CHHHHHHHHHHHHHHHCCCC
Q ss_conf             100001342014787223046-----779989999707984696-888846----7709-98899999999999732599
Q gi|254780812|r  248 GAGYMLKNYRRLTDSNAIGLD-----WSVPLSFALELQKEGPVQ-GNLDPM----RLVV-GNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       248 g~~~~l~~~~~~~g~d~isiD-----~~~dl~~a~~~~~~~~lq-GNldP~----~L~~-~~e~i~~~~~~~l~~~~~~~  316 (346)
                      |-..+-..    ..-.+.|+|     .++-....++    +.++ +-+|=+    .|.| +..+..+|+.++|..+|- =
T Consensus       190 GEakiA~~----~~~kV~SfDL~a~~~~V~~cDm~~----vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~-l  260 (325)
T KOG3045         190 GEAKIASS----ERHKVHSFDLVAVNERVIACDMRN----VPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGL-L  260 (325)
T ss_pred             CHHHHHHC----CCCCEEEEEEECCCCCEEECCCCC----CCCCCCCCCEEEEEHHHHCCCHHHHHHHHHHHHCCCCE-E
T ss_conf             42333204----666504663002788535322447----86766754478752755343389999999887335866-9


Q ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             28960897633668899999999997
Q gi|254780812|r  317 FIFNLGHGITPQVDPKNVLDLVKTVR  342 (346)
Q Consensus       317 ~I~nLGhGi~p~tp~eNv~~~v~~vr  342 (346)
                      ||.-.      ......|+.|++++.
T Consensus       261 ~IAEv------~SRf~dv~~f~r~l~  280 (325)
T KOG3045         261 YIAEV------KSRFSDVKGFVRALT  280 (325)
T ss_pred             EEEEH------HHHCCCHHHHHHHHH
T ss_conf             99860------221340889999998


No 241
>pfam01373 Glyco_hydro_14 Glycosyl hydrolase family 14. This family are beta amylases.
Probab=47.75  E-value=22  Score=16.51  Aligned_cols=16  Identities=13%  Similarity=0.046  Sum_probs=11.1

Q ss_pred             CHHHHHCCCCCHHHHH
Q ss_conf             6146231234579999
Q gi|254780812|r   22 IWLMRQAGRYLPEYRQ   37 (346)
Q Consensus        22 VW~MrQAGrylpey~~   37 (346)
                      ++|..|+||.-+||-.
T Consensus       100 i~ftDr~G~rn~E~lS  115 (399)
T pfam01373       100 MQFKDESGYVNNEALS  115 (399)
T ss_pred             CEEECCCCCCCCCCCC
T ss_conf             5677888984835006


No 242
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase; InterPro: IPR010159   This entry represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolase (3.5.1.14 from EC) is a homodimeric zinc-binding mammalian enzyme that catalyzes the hydrolysis of N-alpha-acylated amino acids except L-aspartic acid. , . These enzymes are listed as being members of MEROPS peptidase family S20A (clan MH).; GO: 0004046 aminoacylase activity, 0006520 amino acid metabolic process, 0005737 cytoplasm.
Probab=47.29  E-value=13  Score=18.25  Aligned_cols=10  Identities=10%  Similarity=0.378  Sum_probs=6.9

Q ss_pred             HHHHHHHHHC
Q ss_conf             7778764210
Q gi|254780812|r  124 FQSISILRKK  133 (346)
Q Consensus       124 ~eAi~~~k~~  133 (346)
                      +||||.||.+
T Consensus       123 LEA~R~Lk~~  132 (433)
T TIGR01880       123 LEAVRNLKAS  132 (433)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999865


No 243
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase; InterPro: IPR006363   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobJ and CbiH precorrin-3B C(17)-methyltransferase (2.1.1.131 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyses the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1) . In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.   These proteins belong to the superfamily of tetrapyrrole (corrin/porphyrin) methylases (IPR000878 from INTERPRO), which includes methylases that use S-adenosylmethionine (S-AdoMet) in the methylation of diverse substrates. A number of other methylases in the cobalamin biosynthesis pathway also belong to this domain superfamily (precorrin-3 methylase, IPR012203 from INTERPRO, IPR012059 from INTERPRO, IPR012382 from INTERPRO, IPR012797 from INTERPRO and others), and a fusion of precorrin-3B C17-methyltransferases with precorrin isomerase is represented by IPR014422 from INTERPRO.   Nomenclature note: precorrin-3B C17-methyltransferase is one of the two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.133 from EC). ; GO: 0008168 methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=46.96  E-value=4.5  Score=21.43  Aligned_cols=119  Identities=13%  Similarity=0.198  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHHHHH---HCCCCCCCH----HHHH---HHH---------CCCHHHHH
Q ss_conf             23787778764210245320111147--999999996---124677652----4677---530---------13722289
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIGFCG--APWTVASYM---ISGGFIKDH----GQNR---VFA---------YQNSRAFN  178 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIGF~G--gP~TlasYm---ieG~~sk~~----~~~~---~~~---------~~~p~~~~  178 (346)
                      +.-+-+||.+-++  +.+|.||. .|  |=|-+|.-.   ++.++..+.    .-+=   .+.         ..+...+-
T Consensus        57 ~~Ra~~Ai~~A~~--G~~VAlvS-SGDpGiYgMA~l~~E~~~~~~~~~~~~dieV~PGiTA~~aAAs~LGaPL~HDFc~I  133 (254)
T TIGR01466        57 IERAELAIELAKE--GKTVALVS-SGDPGIYGMAALVFEILEKKGLEDVAIDIEVIPGITAASAAASLLGAPLGHDFCVI  133 (254)
T ss_pred             HHHHHHHHHHHHC--CCEEEEEE-CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             8999999999860--99489993-68752788899999998623899772347985883378999997336311378888


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEE-EECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf             9999999999999777775498167-84383110068356777612722689999863088623602431100
Q gi|254780812|r  179 WLLDFLSDVSAEYLIAQIHAGVDVI-QIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG  250 (346)
Q Consensus       179 ~ll~~lt~~~~~yl~~Qi~aGad~i-qIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~  250 (346)
                      -|=|.||..-.---+...-|.||-| .|--+++.-= +++|.+..     +|+.+.++  |+.|+ .+.|+.+
T Consensus       134 SLSDlLtPw~~Ie~R~~aAA~aDFVia~YNP~S~~R-~~~~~~a~-----eIL~~~r~--~~TpV-GiVr~Ag  197 (254)
T TIGR01466       134 SLSDLLTPWPVIEKRLRAAAEADFVIAIYNPRSKRR-KEQLRRAV-----EILLEHRK--PDTPV-GIVRNAG  197 (254)
T ss_pred             ECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-HHHHHHHH-----HHHHHHCC--CCCEE-EEEEECC
T ss_conf             745556787899999999844992899974898765-44699999-----99998568--99728-9887458


No 244
>pfam08444 Gly_acyl_tr_C Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region. This family features the C-terminal region of several mammalian specific aralkyl acyl-CoA:amino acid N-acyltransferase (glycine N-acyltransferase) proteins EC:2.3.1.13.
Probab=46.72  E-value=7.3  Score=19.96  Aligned_cols=21  Identities=43%  Similarity=0.911  Sum_probs=14.9

Q ss_pred             CCCCCC-H-HHHHC-----CCCCHHHHH
Q ss_conf             999976-1-46231-----234579999
Q gi|254780812|r   17 INPPPI-W-LMRQA-----GRYLPEYRQ   37 (346)
Q Consensus        17 ~~r~PV-W-~MrQA-----Grylpey~~   37 (346)
                      .+..|| | +|.|.     |-.+||||.
T Consensus         6 peG~PVSW~Lmdqtge~rmgyTlPeyR~   33 (89)
T pfam08444         6 PEGTPVSWSLMDQTGELRMAGTLPKYRR   33 (89)
T ss_pred             CCCCEEEEEEECCCCEEEECCCCHHHHC
T ss_conf             9998747998537421100133777875


No 245
>TIGR00494 crcB crcB protein; InterPro: IPR003691   Three genes, crcA, cspE and crcB when present in high copy confer camphor resistance on a cell and suppress mutations in the chromosomal partition gene mukB in Escherichia coli. The cspE gene has been previously identified as a cold shock-like protein with homologues in all organisms tested .   Camphor and mukB mutations may interfere with chromosome condensation and high copy crcA, cspE and crcB have been implicated as promoting or protecting chromosome folding .; GO: 0016020 membrane.
Probab=46.51  E-value=21  Score=16.72  Aligned_cols=49  Identities=22%  Similarity=0.343  Sum_probs=32.7

Q ss_pred             CCCCCCHH---HHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             02453201---111479999999-9612467765246775301372228999999999999997
Q gi|254780812|r  133 KLPNHITL---IGFCGAPWTVAS-YMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYL  192 (346)
Q Consensus       133 ~l~~~~pL---IGF~GgP~Tlas-YmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl  192 (346)
                      ..+++..|   .||+|| ||+.| |-.          .--.+.++.+..+.++..+...+.-..
T Consensus        58 ~~~~~~~l~i~TGF~G~-~TTFSTfs~----------Et~~Ll~~g~~~~a~Ly~l~~l~~~l~  110 (119)
T TIGR00494        58 VISPDLKLLIGTGFLGA-FTTFSTFSL----------ETLKLLQEGRLGEAVLYILGTLVGGLI  110 (119)
T ss_pred             CCCCCCEEEEEECCCCC-HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             05852045322123131-355689999----------999999712799999999999999999


No 246
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=45.96  E-value=24  Score=16.32  Aligned_cols=119  Identities=14%  Similarity=0.111  Sum_probs=63.9

Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEE-CCCCHH--
Q ss_conf             67776127226899998630886236024311000013420147872230467799899997-07984696-888846--
Q gi|254780812|r  217 EFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQ-GNLDPM--  292 (346)
Q Consensus       217 ~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lq-GNldP~--  292 (346)
                      +-++|-..|...|++.++++-.+.-|.=|.||-..+-....+  +..+.|+|-.-.=..... .-.+++|. |-+|=+  
T Consensus        46 Qv~~WP~nPvd~iI~~lk~~p~~~vIaD~GCGdA~lA~~~~~--~~kV~SfDLva~n~~Vt~cDi~~~PL~d~svDvaVf  123 (214)
T pfam05148        46 QVKKWPVNPLDVIIRKLKRRPGNGVIADLGCGEARIAFRKRE--FENVHSFDLVAVNKRVIPCDMARVPLEDESVDVAVF  123 (214)
T ss_pred             HHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             997489777999999998489971899758865799986467--873885132568988351353368788772636877


Q ss_pred             --HHCC-CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             --7709-988999999999997325992896089763366889999999999730
Q gi|254780812|r  293 --RLVV-GNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSE  344 (346)
Q Consensus       293 --~L~~-~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~~  344 (346)
                        .|.| +..+...|+.++|+..|. =||.-.      ....++++.|++++++.
T Consensus       124 CLSLMGTN~~~fi~EA~RvLk~~G~-L~IAEV------~SRf~~~~~Fv~~~~~~  171 (214)
T pfam05148       124 CLSLMGTNIADFLKEANRILKNGGL-LKIAEV------RSRFPSVGLFERAFTKL  171 (214)
T ss_pred             EHHHHCCCHHHHHHHHHHHCCCCCE-EEEEEE------ECCCCCHHHHHHHHHHC
T ss_conf             5876288779999998760310878-999997------40168989999999975


No 247
>pfam00697 PRAI N-(5'phosphoribosyl)anthranilate (PRA) isomerase.
Probab=45.62  E-value=24  Score=16.29  Aligned_cols=68  Identities=21%  Similarity=0.282  Sum_probs=36.2

Q ss_pred             CCCEEECCCCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCCHHHHHHHHH
Q ss_conf             8722304677998999970798469688884677099889999999999973259928960897633-668899999999
Q gi|254780812|r  261 DSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITP-QVDPKNVLDLVK  339 (346)
Q Consensus       261 g~d~isiD~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p-~tp~eNv~~~v~  339 (346)
                      |-...++||.. +....+......|-|+|+|.       .|    .+.++..+..+-=.|.|=...| .=+++.|+.|++
T Consensus       127 GGtG~~fdw~~-~~~~~~~~~~~~LAGGL~~~-------NV----~~ai~~~~p~gVDvsSGVE~~pG~KD~~ki~~fi~  194 (195)
T pfam00697       127 GGTGKLFDWSL-ISKLLLSGLPVILAGGLTPE-------NV----SEAIQTLGPAGVDVSSGVETNPGVKDLEKIRAFVQ  194 (195)
T ss_pred             CCCCCCCCHHH-HHHHHHCCCCEEEECCCCHH-------HH----HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHC
T ss_conf             98877548999-86555216878994688989-------99----99998529989994070168899769999999970


Q ss_pred             H
Q ss_conf             9
Q gi|254780812|r  340 T  340 (346)
Q Consensus       340 ~  340 (346)
                      +
T Consensus       195 A  195 (195)
T pfam00697       195 A  195 (195)
T ss_pred             C
T ss_conf             9


No 248
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=45.29  E-value=15  Score=17.71  Aligned_cols=74  Identities=22%  Similarity=0.316  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3787778764210245320111-147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r  121 LPIFQSISILRKKLPNHITLIG-FCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG  199 (346)
Q Consensus       121 ~~v~eAi~~~k~~l~~~~pLIG-F~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG  199 (346)
                      ..|.+||+.+|++.+ ++-+|. -|-.|+|.--+-    |.  +.+. . -..|    +.-++.|.    +-+..|.+||
T Consensus        92 ~lv~rAIr~iK~~fp-dl~vi~DVcLc~YT~hGHc----Gi--l~~~-g-~IdN----D~Tl~~L~----k~Al~~A~AG  154 (320)
T cd04824          92 GPVIQAIKLIREEFP-ELLIACDVCLCEYTSHGHC----GI--LYED-G-TINN----EASVKRLA----EVALAYAKAG  154 (320)
T ss_pred             CHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCC----CC--CCCC-C-EECC----HHHHHHHH----HHHHHHHHCC
T ss_conf             499999999998789-8499954101456687777----75--4779-8-1764----89999999----9999999708


Q ss_pred             CCEEEECCCCHH
Q ss_conf             816784383110
Q gi|254780812|r  200 VDVIQIFDTHAG  211 (346)
Q Consensus       200 ad~iqIFDs~ag  211 (346)
                      ||+|.=-|..=|
T Consensus       155 aDivAPSdMMDG  166 (320)
T cd04824         155 AHIVAPSDMMDG  166 (320)
T ss_pred             CCEECCHHCCCC
T ss_conf             983341311346


No 249
>TIGR00746 arcC carbamate kinase; InterPro: IPR003964   The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes. The three- enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 100f total cell protein .   Carbamate kinase is involved in the last step of the AD pathway, converting carbamoyl phosphate and ADP into ammonia, carbon dioxide and ATP . The second step of the pathway involves the degradation of L-citrulline to carbamoyl phosphate and L-ornithine, using ornithine carbamoyltransferase .    The crystal structure of Enterococcus faecium carbamate kinase has been determined to 2.8A resolution . The enzyme exists as a homodimer of two 33kDa subunits. The hallmark of the dimer is a 16-stranded beta-sheet, surrounded by alpha-helices. Each subunit contains an active site within a large crevice.; GO: 0008804 carbamate kinase activity, 0006525 arginine metabolic process.
Probab=44.99  E-value=11  Score=18.69  Aligned_cols=236  Identities=17%  Similarity=0.135  Sum_probs=106.3

Q ss_pred             EECCHHHCCCEEEECCCCCCCCCCCCHH--HHH--CCCCCHHHH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             0010432443373168875222333335--542--056701234-43237877787642102453201111479999999
Q gi|254780812|r   78 LVIADALGRNVRFVENEGPRMDPITTQE--IYL--LNPNIDLFL-NYLLPIFQSISILRKKLPNHITLIGFCGAPWTVAS  152 (346)
Q Consensus        78 l~~~ealG~~v~f~~~~GP~~~p~~~~~--~~~--~~~~~~~~~-~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~Tlas  152 (346)
                      |+-+-.-|.+|-+..|-||.+..+....  ...  -.+..+... +- ..+..-=-++.++|.+..+=-|+.--+-|+.+
T Consensus        35 l~~~~~~G~~lvi~HGNGPQVG~LlLQ~~A~~~~~~~~~~PLDV~GA-mSQG~IGYml~q~l~~~L~~~g~~~~vaT~~T  113 (321)
T TIGR00746        35 LVKLIKRGYELVITHGNGPQVGLLLLQNQAADSEKVVPAMPLDVLGA-MSQGMIGYMLQQALNNELPKEGLEKPVATVLT  113 (321)
T ss_pred             HHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCEECC-CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             99998618979998478036888999998976037889887432020-33530789999999999986689998538999


Q ss_pred             HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE--CCCCHH----HCCHHHHHHHHCCCH
Q ss_conf             96124677652467753013722289999999999999977777549816784--383110----068356777612722
Q gi|254780812|r  153 YMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI--FDTHAG----CLGEHEFENYAARSV  226 (346)
Q Consensus       153 YmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI--FDs~ag----~Ls~~~f~~f~~p~~  226 (346)
                      ..+=  ..+|      =.++||..  .+=.+.++.-.+-. .-.+.|+.+--=  -|+-.|    +=||+=.+-+=.+.+
T Consensus       114 Qt~V--D~~D------pAF~nPTK--piGPfY~e~EAk~~-~a~~~g~~~ke~tdGD~g~gwRrVVPSP~P~~I~E~~~I  182 (321)
T TIGR00746       114 QTIV--DPKD------PAFQNPTK--PIGPFYDEEEAKKR-LAAEKGWIVKEDTDGDDGRGWRRVVPSPRPKDIVEAEVI  182 (321)
T ss_pred             EEEE--CCCC------CCCCCCCC--CCCCCCCHHHHHHH-HHHCCCCEECCCCCCCCCCCCEEECCCCCCCCCEECHHH
T ss_conf             8888--8888------88785497--51688898999999-986178700478887677830376579999663120778


Q ss_pred             HHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCC--EEECCCCCCHHHH-----HHHCCCE-EEECCCCHHHH-CCC
Q ss_conf             6899998630886236024311000013420147872--2304677998999-----9707984-69688884677-099
Q gi|254780812|r  227 GRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSN--AIGLDWSVPLSFA-----LELQKEG-PVQGNLDPMRL-VVG  297 (346)
Q Consensus       227 kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d--~isiD~~~dl~~a-----~~~~~~~-~lqGNldP~~L-~~~  297 (346)
                      +++++.      |+.+|+-.+|-   ++-+.+  |..  .-+++-.+|=+.|     .+++-|. .|-=.+|-+.+ ++.
T Consensus       183 k~L~e~------g~iVI~~GGGG---vPv~~d--g~~kkl~GVeAVIDKDlA~~~LA~~~~AD~L~ILTDVd~vy~nygk  251 (321)
T TIGR00746       183 KTLVEN------GVIVICSGGGG---VPVVED--GAEKKLKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYVNYGK  251 (321)
T ss_pred             HHHHHC------CEEEEEECCCC---EEEEEC--CCCCEEEEEEEEECHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCC
T ss_conf             998648------82799857882---035662--8943022011032366888988877438744310201245220778


Q ss_pred             H--HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             8--899999999999732599289608976336688999999999973
Q gi|254780812|r  298 N--QVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       298 ~--e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~  343 (346)
                      |  +.+.+-+-.=|+.+...+| |.-|- +.|     ||+|-|++|++
T Consensus       252 P~e~~L~~~~~~El~~~~~~G~-Fa~GS-MgP-----KV~AaI~Fv~~  292 (321)
T TIGR00746       252 PDEKKLREVTVEELEDYEKDGH-FAAGS-MGP-----KVEAAIEFVES  292 (321)
T ss_pred             HHHHHHHCCCHHHHHHHHHCCC-CCCCC-CCC-----HHHHHHHHHHC
T ss_conf             2478872469889999985588-66889-860-----38999899871


No 250
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=44.85  E-value=25  Score=16.21  Aligned_cols=58  Identities=17%  Similarity=0.170  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEECCCCH----HHCCHHH------H---HHHHCCCHHHHHHHHHHHCC
Q ss_conf             999999999997777754981678438311----0068356------7---77612722689999863088
Q gi|254780812|r  181 LDFLSDVSAEYLIAQIHAGVDVIQIFDTHA----GCLGEHE------F---ENYAARSVGRIISAVRRKYP  238 (346)
Q Consensus       181 l~~lt~~~~~yl~~Qi~aGad~iqIFDs~a----g~Ls~~~------f---~~f~~p~~kkI~~~ik~~~~  238 (346)
                      ++.+.+.-++-++.-.+||.|.|+|-=..+    ..|||..      |   .+-=..+..+|++++|+..+
T Consensus       147 I~~ii~~f~~aA~ra~~AGfDgVEiHaaHGyLl~qFLSp~~N~RtDeYGGS~eNR~Rf~~Eii~aIR~~vg  217 (338)
T cd02933         147 IPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIG  217 (338)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999998399999982244068998538532689897899989998999999999999729


No 251
>cd00983 recA RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange.
Probab=44.77  E-value=25  Score=16.20  Aligned_cols=68  Identities=12%  Similarity=0.232  Sum_probs=41.6

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHH------------HHHCCCHHHHHHHHH
Q ss_conf             75301372228999999999999997777754981678438311006835677------------761272268999986
Q gi|254780812|r  167 RVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFE------------NYAARSVGRIISAVR  234 (346)
Q Consensus       167 ~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~------------~f~~p~~kkI~~~ik  234 (346)
                      .++++..|+..++.++.+...        +++|+--+-|+||-|.+.+..+.+            +......+++...+.
T Consensus       108 ~~l~~~qp~~~Eq~l~i~~~l--------i~s~~~dliViDSvaal~p~~E~e~~~~d~~vg~~ArlmskalRklt~~l~  179 (325)
T cd00983         108 DNLLISQPDTGEQALEIADSL--------VRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSIN  179 (325)
T ss_pred             HHEEEECCCHHHHHHHHHHHH--------HCCCCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             675896663899999999997--------515887679981511236578876011321143899999999999998753


Q ss_pred             HHCCCCEEEC
Q ss_conf             3088623602
Q gi|254780812|r  235 RKYPNAKFIS  244 (346)
Q Consensus       235 ~~~~~vpiI~  244 (346)
                      +.  ++++|.
T Consensus       180 k~--~~~lIf  187 (325)
T cd00983         180 KS--NTTVIF  187 (325)
T ss_pred             CC--CCEEEE
T ss_conf             37--807999


No 252
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=44.55  E-value=10  Score=18.89  Aligned_cols=42  Identities=26%  Similarity=0.469  Sum_probs=26.7

Q ss_pred             HHHHHHHCCCCCCCCCCH-HHHHCC---CCCHHHHHHHHHCCCHHHHHC
Q ss_conf             799999669989999761-462312---345799999761553899842
Q gi|254780812|r    6 QKILEVLQGNVINPPPIW-LMRQAG---RYLPEYRQIRKKFKNFLDMCY   50 (346)
Q Consensus         6 ~~~l~al~g~~~~r~PVW-~MrQAG---rylpey~~~r~~~~~f~~~~~   50 (346)
                      +.|++.|+... .-.++| .|.|.|   ||+||+..++..++  +|+.|
T Consensus       334 ~~Fl~IL~sp~-~~~~~Lr~M~~~GVLgryIPEFg~IvgqMQ--fDlfH  379 (692)
T PRK00227        334 GDFFRILSSPV-NSRRVVKQMDRHGLWSRYVPEWDRIRGLMP--REPSH  379 (692)
T ss_pred             HHHHHHHCCCC-CHHHHHHHHHHHCCHHHHCCHHHHHCCCCC--CCCCE
T ss_conf             99999984998-668999998773567986700786517757--66550


No 253
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein; InterPro: IPR005675    This model represents largely uncharacterised proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distinct. ; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=44.48  E-value=25  Score=16.17  Aligned_cols=41  Identities=24%  Similarity=0.297  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99999777775498167843831100683567776127226899998630
Q gi|254780812|r  187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRK  236 (346)
Q Consensus       187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~  236 (346)
                      ....-+..--++|||.+-+.|+.+|-||.+-+         +|++.+|+.
T Consensus       155 YAL~~L~~A~~aGAdwlVlcDTNGGTLP~~I~---------EI~~~Vk~~  195 (543)
T TIGR00977       155 YALKTLKVAEKAGADWLVLCDTNGGTLPHEIE---------EITKKVKKS  195 (543)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH---------HHHHHHHHH
T ss_conf             99999999984698289995078799850478---------999999986


No 254
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=44.05  E-value=25  Score=16.13  Aligned_cols=136  Identities=17%  Similarity=0.224  Sum_probs=70.5

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC--C--CE
Q ss_conf             753013722289999999999999977777549816784-383110068356777612722689999863088--6--23
Q gi|254780812|r  167 RVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEHEFENYAARSVGRIISAVRRKYP--N--AK  241 (346)
Q Consensus       167 ~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~--~--vp  241 (346)
                      ...+|.+|+.+.++.+.+          .+++|.+.+.+ |-+.-|.-.|... +.-..-+++|.+.+++++.  .  +|
T Consensus       183 ~~~lyT~Peea~~fve~t----------g~ds~~~~LAvaiGt~HG~Yk~g~~-~L~p~~L~~i~~~v~~~~~~~~~pip  251 (349)
T PRK09197        183 NSKLYTQPEDVAYAYEAL----------GKISPRFTIAASFGNVHGVYKPGNV-KLRPEILKDSQEYVSKKFGLPAKPLN  251 (349)
T ss_pred             CCCCCCCHHHHHHHHHHH----------CCCCCCEEEEEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             213579989999999996----------7888754677663145545579987-76868999999999997289887752


Q ss_pred             EECCCCCCCCCHHHHHCC--CCCCEEECCCCCCHHHH-----HHH-C-CCEEEE---CC-----------CCHHHHC-CC
Q ss_conf             602431100001342014--78722304677998999-----970-7-984696---88-----------8846770-99
Q gi|254780812|r  242 FISFAKGAGYMLKNYRRL--TDSNAIGLDWSVPLSFA-----LEL-Q-KEGPVQ---GN-----------LDPMRLV-VG  297 (346)
Q Consensus       242 iI~f~~g~~~~l~~~~~~--~g~d~isiD~~~dl~~a-----~~~-~-~~~~lq---GN-----------ldP~~L~-~~  297 (346)
                      +. +-+|++.-.+++.+.  .|+.=+.+|  .|+.+|     |+. . +.-.||   ||           +||...+ ..
T Consensus       252 LV-lHGgSG~~~e~i~~aI~~GV~KiNId--Tdlq~Af~~~ir~~~~~n~d~l~~~~gn~~~~~~p~kK~yDPR~~l~~~  328 (349)
T PRK09197        252 FV-FHGGSGSTLEEIKEAVSYGVVKMNID--TDTQWAFWRGVLNYYKKNYDYLQGQLGNPEGEDKPNKKYYDPRVWLRAA  328 (349)
T ss_pred             EE-EECCCCCCHHHHHHHHHCCCEECCCC--HHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             78-86899999999999998396532456--0889999999999998582765044588644567656777928988999


Q ss_pred             HHHHHHHHHHHHHHHCCCC
Q ss_conf             8899999999999732599
Q gi|254780812|r  298 NQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       298 ~e~i~~~~~~~l~~~~~~~  316 (346)
                      .+.+.+.++.-++.++..+
T Consensus       329 ~~~m~~~v~~~~~~~gs~g  347 (349)
T PRK09197        329 EASMAARLEEAFKDLNSIG  347 (349)
T ss_pred             HHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999838888


No 255
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase; InterPro: IPR005888    The conversion of dTDP-glucose into dTDP-4-keto-6-deoxyglucose by Escherichia coli dTDP-glucose 4,6-dehydratase) takes place in the active site in three steps: dehydrogenation to dTDP-4-ketoglucose, dehydration to dTDP-4-ketoglucose-5,6-ene, and rereduction of C6 to the methyl group. The 4,6-dehydratase makes use of tightly bound NAD^+ as the coenzyme for transiently oxidizing the substrate, activating it for the dehydration step . This and other 4,6-dehydratases catalyze the first committed step in all 6-deoxysugar biosynthetic pathways described to date. Numerous 6-deoxysugars are used in bacterial lipopolysaccharide production as well as in the biosynthesis of a diverse array of secondary metabolites.; GO: 0008460 dTDP-glucose 46-dehydratase activity, 0009225 nucleotide-sugar metabolic process.
Probab=43.96  E-value=26  Score=16.12  Aligned_cols=105  Identities=17%  Similarity=0.278  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHHH--HHH----HHHHHHHHHHH--HCCCCEEEEC--CCCH
Q ss_conf             1147999999996124677652467753013-7222899999--999----99999977777--5498167843--8311
Q gi|254780812|r  142 GFCGAPWTVASYMISGGFIKDHGQNRVFAYQ-NSRAFNWLLD--FLS----DVSAEYLIAQI--HAGVDVIQIF--DTHA  210 (346)
Q Consensus       142 GF~GgP~TlasYmieG~~sk~~~~~~~~~~~-~p~~~~~ll~--~lt----~~~~~yl~~Qi--~aGad~iqIF--Ds~a  210 (346)
                      ||.|+=|.-  |||+--+.......-++.|- +++..+.|-+  ..+    |++-.-+-.|+  +.-.|+|.=|  ||..
T Consensus         9 GFIGsnFvr--y~~~~~~D~~v~vlDkLTYAgn~e~L~~l~~~pr~~Fv~GDI~D~~lv~~~~~e~~~D~VvhFAAESHV   86 (340)
T TIGR01181         9 GFIGSNFVR--YILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVDRLLKEHDPDAVVHFAAESHV   86 (340)
T ss_pred             CHHHHHHHH--HHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf             525689999--999747995799863544557865552332396615674230228899888400176778862220523


Q ss_pred             H--HCCHHHHHHHHCCCHHHHHHHHHHHCC--------CCE-EECCCCC
Q ss_conf             0--068356777612722689999863088--------623-6024311
Q gi|254780812|r  211 G--CLGEHEFENYAARSVGRIISAVRRKYP--------NAK-FISFAKG  248 (346)
Q Consensus       211 g--~Ls~~~f~~f~~p~~kkI~~~ik~~~~--------~vp-iI~f~~g  248 (346)
                      +  +.+|+-|-+==.==+-.|++++++...        ++. ++|.+.+
T Consensus        87 DRSI~~P~~F~~TNv~GT~tLLEA~R~~w~aL~e~~~a~~r~l~HiSTD  135 (340)
T TIGR01181        87 DRSISGPEAFIETNVVGTYTLLEAVRKYWHALREAKKAGVRKLHHISTD  135 (340)
T ss_pred             HHCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECC
T ss_conf             3301454114440337889999999740445664451310263576030


No 256
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.92  E-value=16  Score=17.53  Aligned_cols=84  Identities=15%  Similarity=0.077  Sum_probs=37.4

Q ss_pred             HHHHHCCCCCCEEECCCCCCHHHHHHHCCCEEEE--CCC----CHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECC---
Q ss_conf             1342014787223046779989999707984696--888----8467709988999999999997325992896089---
Q gi|254780812|r  253 LKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQ--GNL----DPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGH---  323 (346)
Q Consensus       253 l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lq--GNl----dP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGh---  323 (346)
                      +..+....|..++-+.+  |++.+.++.+++.++  |.+    .|.-++..++.+++       ..-+-|.+.-|.|   
T Consensus       188 l~~l~~~~g~TiI~iTH--dm~~v~~~adrv~vm~~G~Iv~~G~p~evf~~~~~l~~-------~~l~~P~~~~l~~~l~  258 (286)
T PRK13646        188 LKSLQTDENKAIILISH--DMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLAD-------WHIGLPEIVQLQYDFE  258 (286)
T ss_pred             HHHHHHHCCCEEEEECC--CHHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHH-------CCCCCCHHHHHHHHHH
T ss_conf             99999953989999913--89999996999999989899997789999779657987-------8999984999999999


Q ss_pred             ---CCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             ---7633668899999999997306
Q gi|254780812|r  324 ---GITPQVDPKNVLDLVKTVRSEK  345 (346)
Q Consensus       324 ---Gi~p~tp~eNv~~~v~~vr~~~  345 (346)
                         |+.-.--+-..+++++.+|+++
T Consensus       259 ~~~~~~~~~~~~t~e~~~~~~k~~~  283 (286)
T PRK13646        259 QKYQTKLKDIALTEEAFVSLYKEWQ  283 (286)
T ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             8479986766642999999999975


No 257
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.57  E-value=26  Score=16.08  Aligned_cols=44  Identities=18%  Similarity=0.123  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf             268999986308862360243110000134201478722304677
Q gi|254780812|r  226 VGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWS  270 (346)
Q Consensus       226 ~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~  270 (346)
                      +.+.+..+|++.|..+.|-.-..+-.......+ .|+|.+=+|+-
T Consensus       183 i~~av~~~r~~~~~~~kIeVEv~~l~q~~~a~~-~g~DiIlLDNm  226 (290)
T PRK06559        183 VQKAIAQARAYAPFVKMVEVEVESLAAAEEAAA-AGVDIIMLDNM  226 (290)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH-CCCCEEEECCC
T ss_conf             999999999858987669998568999999986-69999998798


No 258
>KOG2607 consensus
Probab=43.02  E-value=26  Score=16.02  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             877787642102453201111479
Q gi|254780812|r  123 IFQSISILRKKLPNHITLIGFCGA  146 (346)
Q Consensus       123 v~eAi~~~k~~l~~~~pLIGF~Gg  146 (346)
                      |-+.|+++++--++.+.+.||+++
T Consensus        66 vk~iiEIL~~Tekdtkn~fG~yss   89 (505)
T KOG2607          66 VKKIIEILLKTEKDTKNIFGRYSS   89 (505)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf             999999999607015556655377


No 259
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=42.05  E-value=27  Score=15.92  Aligned_cols=12  Identities=17%  Similarity=0.055  Sum_probs=3.9

Q ss_pred             CCCEEECCCCCC
Q ss_conf             872230467799
Q gi|254780812|r  261 DSNAIGLDWSVP  272 (346)
Q Consensus       261 g~d~isiD~~~d  272 (346)
                      |++++.......
T Consensus        40 GfeVi~~g~~~t   51 (143)
T COG2185          40 GFEVINLGLFQT   51 (143)
T ss_pred             CCEEEECCCCCC
T ss_conf             937981587589


No 260
>TIGR02146 LysS_fung_arch homocitrate synthase; InterPro: IPR011872    This entry includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus . This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs .; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=41.79  E-value=28  Score=15.89  Aligned_cols=146  Identities=18%  Similarity=0.201  Sum_probs=71.4

Q ss_pred             CEEEECCCCCCCCCCCCHH---HHHCCCCCH---HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             3373168875222333335---542056701---2344323787778764210245320111147999999996124677
Q gi|254780812|r   87 NVRFVENEGPRMDPITTQE---IYLLNPNID---LFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFI  160 (346)
Q Consensus        87 ~v~f~~~~GP~~~p~~~~~---~~~~~~~~~---~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~s  160 (346)
                      +|+|.|=.-|...+=...+   ...+..+-+   +...+..-+.+.++..-+-=.+.+.++ |+-|-+-+..     +.-
T Consensus        33 GV~~IE~g~P~vS~d~~~~ik~i~~L~~~G~l~a~iv~Hsra~~~D~~~a~~~~Vd~i~~~-~G~S~~~l~~-----~h~  106 (355)
T TIGR02146        33 GVDYIEVGHPAVSPDIRKDIKLIASLGKEGLLKAKIVTHSRAVLDDIEVAVETEVDRIDVF-FGVSKLLLKY-----KHR  106 (355)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE-EECHHHHHCC-----CCC
T ss_conf             8105724887554778999999983388876003556778999999877642278657874-3005888510-----257


Q ss_pred             CCHHHHHHHH-------C----------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHC
Q ss_conf             6524677530-------1----------3722289999999999999977777549816784383110068356777612
Q gi|254780812|r  161 KDHGQNRVFA-------Y----------QNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAA  223 (346)
Q Consensus       161 k~~~~~~~~~-------~----------~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~  223 (346)
                      ++...+..-+       .          .-.+.+..=++-    ++.-++.--+.|||=|.|.|| .|...|.++++   
T Consensus       107 ~~~~~al~~i~e~I~y~K~~Gphv~VRFtaED~~R~d~~~----L~~v~k~a~~~~vDRVsiADT-vG~~~P~~~y~---  178 (355)
T TIGR02146       107 KDLEEALEIIAEVIEYAKSHGPHVKVRFTAEDTFRSDLDD----LLKVYKTAKEAGVDRVSIADT-VGVATPRRVYE---  178 (355)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH----HHHHHHHHHHCCCCEEEEECC-CCCCCCHHHHH---
T ss_conf             7889999999999999972488247886478885121899----999999997618885675134-36788068999---


Q ss_pred             CCHHHHHHHHHHHC-CCCEEECCCCC-CCC
Q ss_conf             72268999986308-86236024311-000
Q gi|254780812|r  224 RSVGRIISAVRRKY-PNAKFISFAKG-AGY  251 (346)
Q Consensus       224 p~~kkI~~~ik~~~-~~vpiI~f~~g-~~~  251 (346)
                           +++.++..- |++++=.||.| .+.
T Consensus       179 -----L~~~v~~~VGpg~~~~~H~HND~G~  203 (355)
T TIGR02146       179 -----LVRKVKRVVGPGVDIEIHAHNDLGL  203 (355)
T ss_pred             -----HHHHHHHHCCCCCCEEEEEECCHHH
T ss_conf             -----9999986408876435630175779


No 261
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=41.71  E-value=28  Score=15.89  Aligned_cols=79  Identities=11%  Similarity=0.150  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHCCCCEEEECCC--CHHHCCHHHHHHHHCCC-HHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCC
Q ss_conf             9999977777549816784383--11006835677761272-26899998630886236024311000013420147872
Q gi|254780812|r  187 VSAEYLIAQIHAGVDVIQIFDT--HAGCLGEHEFENYAARS-VGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSN  263 (346)
Q Consensus       187 ~~~~yl~~Qi~aGad~iqIFDs--~ag~Ls~~~f~~f~~p~-~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d  263 (346)
                      .+.+|++.-.++||+.+.|--=  |-.-+||++=+  ..|+ --..+..+|+..|++|+|. .+|....-....-+..+|
T Consensus       152 ~l~~f~~~~~~aG~~~i~vH~R~a~l~Glspk~nR--~ippl~~~~v~~lk~~~p~ipvi~-NGdI~s~~~~~~~l~~~D  228 (333)
T PRK11815        152 FLCDFVDTVAEAGCDRFIVHARKAWLKGLSPKENR--EIPPLDYDRVYRLKRDFPHLTIEI-NGGIKTLEEAKEHLQHVD  228 (333)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEHHHHHCCCCHHHHC--CCCCHHHHHHHHHHHHCCCCEEEE-CCCCCCHHHHHHHHHCCC
T ss_conf             99999999997599889996027877267877750--587304899999997667871884-599699999999985599


Q ss_pred             EEECC
Q ss_conf             23046
Q gi|254780812|r  264 AIGLD  268 (346)
Q Consensus       264 ~isiD  268 (346)
                      ++-+.
T Consensus       229 GVMiG  233 (333)
T PRK11815        229 GVMIG  233 (333)
T ss_pred             EEEEH
T ss_conf             62114


No 262
>KOG2708 consensus
Probab=41.53  E-value=6  Score=20.53  Aligned_cols=83  Identities=11%  Similarity=0.204  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHCCCCCCHHHHH-----HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             877787642102453201111-----479999999961246776524677530137222899999999999999777775
Q gi|254780812|r  123 IFQSISILRKKLPNHITLIGF-----CGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIH  197 (346)
Q Consensus       123 v~eAi~~~k~~l~~~~pLIGF-----~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~  197 (346)
                      |-+|++...-. .+++-.|-|     .|+|...-.-         ...+..++++.|-.       -.+.|+.++.+--.
T Consensus        57 v~~al~ea~v~-~~diD~icyTKGPGmgaPL~~vai---------vaRtlsllw~kPlv-------~VNHCigHIEMGR~  119 (336)
T KOG2708          57 VKQALEEAGVT-SDDIDCICYTKGPGMGAPLSVVAI---------VARTLSLLWNKPLV-------GVNHCIGHIEMGRE  119 (336)
T ss_pred             HHHHHHHCCCC-HHHCCEEEECCCCCCCCCHHHHHH---------HHHHHHHHHCCCCC-------CCHHHHHHHHHCCE
T ss_conf             99999873997-522878997278987876266899---------99999998279832-------30121111322102


Q ss_pred             -CCCC-EEEECCCCHH----HCCHHHHHHHH
Q ss_conf             -4981-6784383110----06835677761
Q gi|254780812|r  198 -AGVD-VIQIFDTHAG----CLGEHEFENYA  222 (346)
Q Consensus       198 -aGad-~iqIFDs~ag----~Ls~~~f~~f~  222 (346)
                       .||+ .+-+.-|-++    .-|.+-|+-|.
T Consensus       120 iTgA~nPvvLYvSGGNTQvIAYse~rYrIFG  150 (336)
T KOG2708         120 ITGAQNPVVLYVSGGNTQVIAYSEKRYRIFG  150 (336)
T ss_pred             ECCCCCCEEEEEECCCEEEEEECCCEEEEEC
T ss_conf             2168897799990796699997154145403


No 263
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=41.44  E-value=28  Score=15.86  Aligned_cols=47  Identities=17%  Similarity=0.122  Sum_probs=20.8

Q ss_pred             HHHHHHHHHCC-CCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf             89999863088-623602431100001342014787223046779989999
Q gi|254780812|r  228 RIISAVRRKYP-NAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFAL  277 (346)
Q Consensus       228 kI~~~ik~~~~-~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~  277 (346)
                      ++++.+....| +.|.-.+..|.-..+..... .|+|.  +|...+...||
T Consensus       228 ~il~~~~~~LP~~kPryLmGvG~P~~i~~~V~-~GvD~--FDcv~Ptr~AR  275 (366)
T PRK00112        228 RILEHTAPLLPEDKPRYLMGVGTPEDLVEGVA-RGVDM--FDCVMPTRNAR  275 (366)
T ss_pred             HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHH-HCCCC--HHCCCCHHHHH
T ss_conf             99999874488777556535899899999999-38981--11254057771


No 264
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=41.04  E-value=28  Score=15.82  Aligned_cols=67  Identities=12%  Similarity=0.192  Sum_probs=41.3

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHH------------HHCCCHHHHHHHHHH
Q ss_conf             53013722289999999999999977777549816784383110068356777------------612722689999863
Q gi|254780812|r  168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFEN------------YAARSVGRIISAVRR  235 (346)
Q Consensus       168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~------------f~~p~~kkI~~~ik~  235 (346)
                      ++++..|+..++.++.+..        .++.|+-.+-|+||-|.+.+..+.+.            ......+++...+.+
T Consensus       106 ~l~~~qpd~~Eqal~i~~~--------li~~~~~~liViDSvaal~p~~E~e~~~~d~~~g~~Ar~ms~alRklt~~l~k  177 (322)
T pfam00154       106 NLLVSQPDTGEQALEIADM--------LVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISK  177 (322)
T ss_pred             HEEEECCCHHHHHHHHHHH--------HHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             5389778839999999999--------85379976599825345676888752432232135799999999999999730


Q ss_pred             HCCCCEEEC
Q ss_conf             088623602
Q gi|254780812|r  236 KYPNAKFIS  244 (346)
Q Consensus       236 ~~~~vpiI~  244 (346)
                      .  ++++|.
T Consensus       178 ~--~~~~If  184 (322)
T pfam00154       178 S--NTTVIF  184 (322)
T ss_pred             C--CCEEEE
T ss_conf             5--854999


No 265
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1.  Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=40.34  E-value=29  Score=15.74  Aligned_cols=115  Identities=13%  Similarity=0.103  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHH
Q ss_conf             99999999999999777775498167843831100683567776127226899998630886236024311000013420
Q gi|254780812|r  178 NWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYR  257 (346)
Q Consensus       178 ~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~  257 (346)
                      ..+++.=.+.+.+.++.-+++|+|+|-.=-+         ..++++.|+       .+.  |+..+.-.+  ...++.++
T Consensus       109 ~~~~~qE~~~l~~~v~~I~~~g~nVVl~~k~---------I~d~A~~~l-------~k~--gI~~vr~vk--~~dl~rla  168 (261)
T cd03334         109 DPVILQEKEYLKNLVSRIVALRPDVILVEKS---------VSRIAQDLL-------LEA--GITLVLNVK--PSVLERIS  168 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEECCC---------CCHHHHHHH-------HHC--CCEEEECCC--HHHHHHHH
T ss_conf             9999999999999999999609999998897---------798999999-------987--996890389--99999999


Q ss_pred             CCCCCCEE-ECCCCC---CHHHHH-----HHC----C--CE-EEECCCCHH----HHCCCHHHHHHHHHHHHHHH
Q ss_conf             14787223-046779---989999-----707----9--84-696888846----77099889999999999973
Q gi|254780812|r  258 RLTDSNAI-GLDWSV---PLSFAL-----ELQ----K--EG-PVQGNLDPM----RLVVGNQVMIDGVNAILDVL  312 (346)
Q Consensus       258 ~~~g~d~i-siD~~~---dl~~a~-----~~~----~--~~-~lqGNldP~----~L~~~~e~i~~~~~~~l~~~  312 (346)
                      +.||++++ |+|...   .+..+-     +++    .  .. .+.|-=.|.    +|.|+.+.+.+++++++..+
T Consensus       169 r~tGa~iv~s~d~l~~~~~LG~c~~f~v~~i~~e~~~~Kt~~~~egc~~~~~~TIlLRG~~~~~L~evkR~l~da  243 (261)
T cd03334         169 RCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFM  243 (261)
T ss_pred             HHHCCEEECCHHHCCCCCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             986990334677746865384512699999952577733699996789986779999879887999999999999


No 266
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=40.19  E-value=29  Score=15.73  Aligned_cols=10  Identities=30%  Similarity=0.723  Sum_probs=5.3

Q ss_pred             HHHHHHHHHH
Q ss_conf             1479999999
Q gi|254780812|r  143 FCGAPWTVAS  152 (346)
Q Consensus       143 F~GgP~Tlas  152 (346)
                      |.-.||..-+
T Consensus        92 ~~~s~fd~~s  101 (329)
T TIGR03569        92 FLSTPFDLES  101 (329)
T ss_pred             EEECCCCHHH
T ss_conf             9989698999


No 267
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=39.82  E-value=29  Score=15.69  Aligned_cols=48  Identities=23%  Similarity=0.352  Sum_probs=33.8

Q ss_pred             CCCCHHHHHHHHCCCHHHHHHHH-----------HHHH-------------HHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             77652467753013722289999-----------9999-------------99999977777549816784383
Q gi|254780812|r  159 FIKDHGQNRVFAYQNSRAFNWLL-----------DFLS-------------DVSAEYLIAQIHAGVDVIQIFDT  208 (346)
Q Consensus       159 ~sk~~~~~~~~~~~~p~~~~~ll-----------~~lt-------------~~~~~yl~~Qi~aGad~iqIFDs  208 (346)
                      |--.|...++|+.++|  |.+|-           ++|.             +++..|++.-.++|+|+.-||||
T Consensus       581 GGATfDVamRFL~EdP--WeRL~~lRk~~PNvlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDs  652 (1149)
T COG1038         581 GGATFDVAMRFLKEDP--WERLERLRKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDS  652 (1149)
T ss_pred             CCCHHHHHHHHHCCCH--HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf             8713788898641488--89999998768646899986005656767796689999999987669648984100


No 268
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=39.72  E-value=30  Score=15.68  Aligned_cols=52  Identities=19%  Similarity=0.257  Sum_probs=26.5

Q ss_pred             HHHHHHHCCCCEEEECCCCHH----HCCHHH---HHHHH------CCCHHHHHHHHHHHC-CCCEE
Q ss_conf             977777549816784383110----068356---77761------272268999986308-86236
Q gi|254780812|r  191 YLIAQIHAGVDVIQIFDTHAG----CLGEHE---FENYA------ARSVGRIISAVRRKY-PNAKF  242 (346)
Q Consensus       191 yl~~Qi~aGad~iqIFDs~ag----~Ls~~~---f~~f~------~p~~kkI~~~ik~~~-~~vpi  242 (346)
                      -++.-.+||.|.|+|-=..+-    .|||..   =++|.      ..+..+|++++|+.. ++.|+
T Consensus       146 AA~~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~EIi~~Ir~~vg~~f~i  211 (343)
T cd04734         146 AARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIV  211 (343)
T ss_pred             HHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             999999739988984457774699846985589967679888999899999999999981987761


No 269
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719   Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria .    This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=39.45  E-value=8.1  Score=19.64  Aligned_cols=76  Identities=14%  Similarity=0.063  Sum_probs=42.4

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCH
Q ss_conf             99999996124677652467753013722289999999999999977777549816784383110068356777612722
Q gi|254780812|r  147 PWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSV  226 (346)
Q Consensus       147 P~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~  226 (346)
                      =+-+|.|++=.=||-|-...+.  .++.+.+++||..+-+..-.--+..-+.=+=+|-|    |=.|+.++-.       
T Consensus       173 ~~~~A~Y~~vN~SSPNTPgLR~--LQ~~~~~~~LL~~~k~~~~~L~~~~~KY~P~~VKI----APDL~~~dl~-------  239 (370)
T TIGR01036       173 VGPLADYLVVNVSSPNTPGLRD--LQYKESLRDLLTAVKEETDGLRRVHRKYVPVLVKI----APDLSESDLL-------  239 (370)
T ss_pred             HHHCCCEEEEECCCCCCCCHHH--HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE----CCCCCHHHHH-------
T ss_conf             7321070788635889735132--40143589999999999999998612788578972----6898821389-------


Q ss_pred             HHHHHHHHHH
Q ss_conf             6899998630
Q gi|254780812|r  227 GRIISAVRRK  236 (346)
Q Consensus       227 kkI~~~ik~~  236 (346)
                       +|++.+.+.
T Consensus       240 -~IAd~~v~~  248 (370)
T TIGR01036       240 -DIADSAVEL  248 (370)
T ss_pred             -HHHHHHHHC
T ss_conf             -999999871


No 270
>KOG2794 consensus
Probab=39.41  E-value=17  Score=17.30  Aligned_cols=74  Identities=19%  Similarity=0.284  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             23787778764210245320111147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r  120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG  199 (346)
Q Consensus       120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG  199 (346)
                      -.+|.+||+++|+..++=+----.|-.|+|---+.    |. -.+   .-...+++.+|+|-+    ..    .+|..||
T Consensus       108 ~gpvi~ai~~lr~~fPdL~i~cDVclc~YsshGHc----Gl-l~E---dG~i~~~esv~rlae----vA----v~yAkAG  171 (340)
T KOG2794         108 NGPVIRAIRLLRDRFPDLVIACDVCLCEYSSHGHC----GL-LGE---DGVINNDESVHRLAE----VA----VSYAKAG  171 (340)
T ss_pred             CCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC----CE-ECC---CCCCCCHHHHHHHHH----HH----HHHHHCC
T ss_conf             88477789999875866078753330345578866----13-336---652157888999999----99----9988627


Q ss_pred             CCEEEECCCC
Q ss_conf             8167843831
Q gi|254780812|r  200 VDVIQIFDTH  209 (346)
Q Consensus       200 ad~iqIFDs~  209 (346)
                      ||+|.=-|-.
T Consensus       172 a~vVapSDmm  181 (340)
T KOG2794         172 ADVVAPSDMM  181 (340)
T ss_pred             CCEECCHHHH
T ss_conf             9553606753


No 271
>TIGR01264 tyr_amTase_E tyrosine aminotransferase; InterPro: IPR005957   This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate.  L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate.; GO: 0004838 tyrosine transaminase activity, 0030170 pyridoxal phosphate binding, 0009072 aromatic amino acid family metabolic process.
Probab=39.09  E-value=18  Score=17.12  Aligned_cols=33  Identities=33%  Similarity=0.397  Sum_probs=27.4

Q ss_pred             HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             0798469688884677099889999999999973
Q gi|254780812|r  279 LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVL  312 (346)
Q Consensus       279 ~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~  312 (346)
                      +|+...+||-| |.+|..||++....|.+.|+.-
T Consensus       290 ~GpntlvQGAl-~~iL~~TPq~Yf~~~~~~l~~n  322 (415)
T TIGR01264       290 LGPNTLVQGAL-PEILLKTPQEYFDGTVSVLESN  322 (415)
T ss_pred             CCCCHHHHHHH-HHHHHHCCHHHHHHHHHHHHHH
T ss_conf             46201144217-9886406556778999998740


No 272
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II; InterPro: IPR014119    The proteins in this entry are component II of the heterodimeric heptaprenyl diphosphate synthase. They are found proximate to the gene for component I (IPR009920 from INTERPRO). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis..
Probab=39.06  E-value=30  Score=15.61  Aligned_cols=139  Identities=19%  Similarity=0.298  Sum_probs=63.3

Q ss_pred             CCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHC-CCCEEECCCCC
Q ss_conf             137222899999-9999999997777754981678438311006835677761272268999986308-86236024311
Q gi|254780812|r  171 YQNSRAFNWLLD-FLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKY-PNAKFISFAKG  248 (346)
Q Consensus       171 ~~~p~~~~~ll~-~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~-~~vpiI~f~~g  248 (346)
                      .++|. +|++|. .+.++|.-          ++=||=|       .-.|++-.-.|++||-..---.- ..|...-...|
T Consensus       127 i~dp~-~H~~LS~tivEvc~G----------EIEQIkD-------kYN~dQ~lR~YLRRIKRKTALLIA~SCqLGAia~G  188 (325)
T TIGR02748       127 IKDPR-AHQILSKTIVEVCLG----------EIEQIKD-------KYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASG  188 (325)
T ss_pred             CCCHH-HHHHHHHHHHHHHHC----------CCHHHHC-------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             69827-889999999988622----------1010010-------13788860036656668899999987765200058


Q ss_pred             CCC-CHHHHHCCCCCCEEECCCCC--CH-H---HHHHHCCCE---EEECCCC-HHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             000-01342014787223046779--98-9---999707984---6968888-46770-998899999999999732599
Q gi|254780812|r  249 AGY-MLKNYRRLTDSNAIGLDWSV--PL-S---FALELQKEG---PVQGNLD-PMRLV-VGNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       249 ~~~-~l~~~~~~~g~d~isiD~~~--dl-~---~a~~~~~~~---~lqGNld-P~~L~-~~~e~i~~~~~~~l~~~~~~~  316 (346)
                      .+. ....+-. -|+ =+|+.+.+  |+ +   .-.++|+..   -+|||+- |++-- .++-.+++...++..+.    
T Consensus       189 a~~~~~~~LY~-FGY-YvGMSyQI~DDiLDFvgTee~LGKPAG~DLlQGNvTLPvLYAl~d~~~~K~~i~~v~~~~----  262 (325)
T TIGR02748       189 ADEAIVKKLYW-FGY-YVGMSYQIIDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYALEDPIGLKKRIEQVLEET----  262 (325)
T ss_pred             CCHHHHHHHHH-HHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC----
T ss_conf             89878773655-335-420145444321366466311688757653552016788885159788899997303445----


Q ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             289608976336688999999999973
Q gi|254780812|r  317 FIFNLGHGITPQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       317 ~I~nLGhGi~p~tp~eNv~~~v~~vr~  343 (346)
                           |     .++.+.++.+|++||+
T Consensus       263 -----g-----~v~~~em~~~i~~vk~  279 (325)
T TIGR02748       263 -----G-----SVTAEEMEELIEEVKK  279 (325)
T ss_pred             -----C-----CCCHHHHHHHHHHHHH
T ss_conf             -----6-----7688899999999850


No 273
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.73  E-value=31  Score=15.58  Aligned_cols=78  Identities=18%  Similarity=0.167  Sum_probs=40.7

Q ss_pred             CCCEEECCCCCCHHHHHHHCC--------CEEEECCCCHHHHCCCHHHHHHH------HHHHHHHHCCCCCEEEECCCCC
Q ss_conf             872230467799899997079--------84696888846770998899999------9999997325992896089763
Q gi|254780812|r  261 DSNAIGLDWSVPLSFALELQK--------EGPVQGNLDPMRLVVGNQVMIDG------VNAILDVLGSGPFIFNLGHGIT  326 (346)
Q Consensus       261 g~d~isiD~~~dl~~a~~~~~--------~~~lqGNldP~~L~~~~e~i~~~------~~~~l~~~~~~~~I~nLGhGi~  326 (346)
                      |..++-+.+  |++++.++.+        +++.+|  .|.-++..++.+.+.      +.++.......|+  +++  -.
T Consensus       195 g~Tvi~vTH--dl~~v~~~aDRvivl~~G~Iv~~G--tp~evf~~~~~l~~~~l~~P~~~~l~~~L~~~g~--~~~--~~  266 (287)
T PRK13637        195 NMTIILVSH--SMEDVAKIADRIIVMNKGRCELQG--TPREVFKEVDTLESIGLAVPQVTYLVRKLRKKGF--NIP--DD  266 (287)
T ss_pred             CCEEEEECC--CHHHHHHHCCEEEEEECCEEEEEC--CHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHCCC--CCC--CC
T ss_conf             989999957--999999969999999899999987--8899876988998769999919999999997599--999--88


Q ss_pred             CCCCHHHHHHHHHHHHHCCC
Q ss_conf             36688999999999973069
Q gi|254780812|r  327 PQVDPKNVLDLVKTVRSEKI  346 (346)
Q Consensus       327 p~tp~eNv~~~v~~vr~~~~  346 (346)
                      |-|..|-++.+++..|+.|+
T Consensus       267 ~~t~~e~~~~l~~~l~~~~~  286 (287)
T PRK13637        267 IFTIEEAKEELLKYLRSAKI  286 (287)
T ss_pred             CCCHHHHHHHHHHHHHHCCC
T ss_conf             66899999999999976758


No 274
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit; InterPro: IPR006470   The sequences in this group represent the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (IPR006443 from INTERPRO) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane . In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within this group. This appears to be the case for the alpha, gamma and epsilon (accessory protein IPR006452 from INTERPRO) chains as well. ; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0016021 integral to membrane.
Probab=38.58  E-value=26  Score=16.08  Aligned_cols=81  Identities=14%  Similarity=0.119  Sum_probs=43.2

Q ss_pred             CCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCEEEECCCCH---------HH
Q ss_conf             272268999986308862360243110000134201478722304677998999970798469688884---------67
Q gi|254780812|r  223 ARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDP---------MR  293 (346)
Q Consensus       223 ~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lqGNldP---------~~  293 (346)
                      ..|.+=|++..+++.-|..  |.-.|.-..++.|.+. +--+    |+.+      +--+.+=.| +.|         .+
T Consensus       122 iQY~NGiVDF~h~kCIGCg--yCi~GCPFnIPR~~k~-dnr~----yKCt------lC~DRVsvG-~ePACvKtCPT~ai  187 (293)
T TIGR01582       122 IQYQNGIVDFDHEKCIGCG--YCIVGCPFNIPRIDKV-DNRA----YKCT------LCIDRVSVG-QEPACVKTCPTNAI  187 (293)
T ss_pred             EEECCCEEECCCCCEECCC--CCCCCCCCCCCCCCCC-CCCC----EEEC------CCCCEEECC-CCCCCCCCCCCCCC
T ss_conf             7504863741158600067--3025878888888744-5751----1104------540000137-89650012776431


Q ss_pred             HCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             709988999999999997325992
Q gi|254780812|r  294 LVVGNQVMIDGVNAILDVLGSGPF  317 (346)
Q Consensus       294 L~~~~e~i~~~~~~~l~~~~~~~~  317 (346)
                      -||++|++++..++.++..+++||
T Consensus       188 ~FG~KEdM~~~a~~~vadLK~RGY  211 (293)
T TIGR01582       188 SFGFKEDMKERAEKRVADLKSRGY  211 (293)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             158757899998788888763488


No 275
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=38.57  E-value=31  Score=15.56  Aligned_cols=87  Identities=13%  Similarity=0.163  Sum_probs=42.4

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHH
Q ss_conf             20111147999999996124677652467753013722289999999999999977777549816784-38311006835
Q gi|254780812|r  138 ITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEH  216 (346)
Q Consensus       138 ~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~  216 (346)
                      +|=++|  ||.++...-    ...+....--+|.++|+              .|+...+++|||.|.+ +++        
T Consensus        43 Vpn~t~--g~~~v~~i~----~~t~~~~DvHLMv~~P~--------------~~i~~~~~~g~d~I~~H~Ea--------   94 (220)
T PRK05581         43 VPNLTI--GPPVVEAIR----KVTKLPLDVHLMVENPD--------------RYVPDFAKAGADIITFHVEA--------   94 (220)
T ss_pred             CCCCCC--CHHHHHHHH----HHCCCCEEEEEEEECHH--------------HHHHHHHHCCCCEEEECCCC--------
T ss_conf             775563--999999998----41899647899971888--------------87999997399889981675--------


Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHC
Q ss_conf             677761272268999986308862360243110000134201
Q gi|254780812|r  217 EFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRR  258 (346)
Q Consensus       217 ~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~  258 (346)
                            .+...++++.+|+.+..+-+..-+...-..+..+.+
T Consensus        95 ------~~~~~~~i~~ik~~g~k~Glalnp~T~~~~l~~~l~  130 (220)
T PRK05581         95 ------SEHIHRLLQLIKEAGIKAGLVLNPATPLEYLEYVLP  130 (220)
T ss_pred             ------CCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
T ss_conf             ------027999999999749970467669999899999987


No 276
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=38.55  E-value=31  Score=15.56  Aligned_cols=177  Identities=16%  Similarity=0.217  Sum_probs=85.2

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             77876421024532011114799999999612467765246775301372228999999999999997777754981678
Q gi|254780812|r  125 QSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQ  204 (346)
Q Consensus       125 eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iq  204 (346)
                      +|++.+++ +++.+-+|= +|-|.-.+-      |.+-....+. .+  |+..---=-+.+|.-.-..++-+++|||.+.
T Consensus        17 ~Ai~~a~~-v~~~~diiE-vGTpLik~e------G~~aV~~lr~-~~--pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~t   85 (217)
T COG0269          17 EAIEIAEE-VADYVDIIE-VGTPLIKAE------GMRAVRALRE-LF--PDKIIVADLKTADAGAIEARMAFEAGADWVT   85 (217)
T ss_pred             HHHHHHHH-HHHCCEEEE-ECCHHHHHH------HHHHHHHHHH-HC--CCCEEEEEEEECCHHHHHHHHHHHCCCCEEE
T ss_conf             99999997-122132998-076999985------1799999998-78--9986886203224048999999973898799


Q ss_pred             ECCCCHHHCCHHHHHH----------------HHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf             4383110068356777----------------612722689999863088623602431100001342014787223046
Q gi|254780812|r  205 IFDTHAGCLGEHEFEN----------------YAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLD  268 (346)
Q Consensus       205 IFDs~ag~Ls~~~f~~----------------f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD  268 (346)
                      |--    .=+.+.-..                +...-..+-.+.+++.+++. +++| +|           ......+..
T Consensus        86 V~g----~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~-~~~H-~g-----------~D~q~~G~~  148 (217)
T COG0269          86 VLG----AADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQ-VILH-RG-----------RDAQAAGKS  148 (217)
T ss_pred             EEE----CCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCE-EEEE-EC-----------CCHHHHCCC
T ss_conf             980----488899999999999839869998516899999999999718978-9997-04-----------347650899


Q ss_pred             C-CCCHHHHHHHC---CCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCC-CCCEEEECCCCCCCCC-HHHHHHHHHHHH
Q ss_conf             7-79989999707---9846968888467709988999999999997325-9928960897633668-899999999997
Q gi|254780812|r  269 W-SVPLSFALELQ---KEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGS-GPFIFNLGHGITPQVD-PKNVLDLVKTVR  342 (346)
Q Consensus       269 ~-~~dl~~a~~~~---~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~-~~~I~nLGhGi~p~tp-~eNv~~~v~~vr  342 (346)
                      | ..++...+++.   -.+++-|.++|..+               ..+.+ +..||=-|-+|..... .+-.+.|.+.++
T Consensus       149 ~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i---------------~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~  213 (217)
T COG0269         149 WGEDDLEKIKKLSDLGAKVAVAGGITPEDI---------------PLFKGIGADIVIVGRAITGAKDPAEAARKFKEEID  213 (217)
T ss_pred             CCHHHHHHHHHHHCCCCEEEEECCCCHHHH---------------HHHHCCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
T ss_conf             417789999986236835998668788788---------------99864899799988221489997999999999864


Q ss_pred             HC
Q ss_conf             30
Q gi|254780812|r  343 SE  344 (346)
Q Consensus       343 ~~  344 (346)
                      .+
T Consensus       214 ~~  215 (217)
T COG0269         214 KI  215 (217)
T ss_pred             CC
T ss_conf             25


No 277
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=38.48  E-value=28  Score=15.83  Aligned_cols=59  Identities=15%  Similarity=0.225  Sum_probs=32.6

Q ss_pred             CCHHHHHCCCCCCEEECCCCC--CHHHH-----H---H--HCCCEEEECCCCHHHHCCC-HHHHHHHHHHHHHHH
Q ss_conf             001342014787223046779--98999-----9---7--0798469688884677099-889999999999973
Q gi|254780812|r  251 YMLKNYRRLTDSNAIGLDWSV--PLSFA-----L---E--LQKEGPVQGNLDPMRLVVG-NQVMIDGVNAILDVL  312 (346)
Q Consensus       251 ~~l~~~~~~~g~d~isiD~~~--dl~~a-----~---~--~~~~~~lqGNldP~~L~~~-~e~i~~~~~~~l~~~  312 (346)
                      ..+..+.+  ..+.+|+|++.  |++..     +   +  +.++.++.||+ |..+..| -+++.+...+..++.
T Consensus       206 yFySpl~~--~lEllg~D~R~esniDg~~rlPa~~qle~~~~p~~vvvGn~-p~vlRESLL~~vf~~ge~fV~a~  277 (356)
T PRK13278        206 YFYSPIKN--RLELLGIDRRYESNIDGLVRIPAKDQLEAGIDPTYVVTGNI-PLVLRESLLPQVFEYGERFVEAS  277 (356)
T ss_pred             HCCCCCCC--CEEEEECCEEEEECCHHHCCCCHHHHHHCCCCCCEEEECCC-CCEEEHHHHHHHHHHHHHHHHHH
T ss_conf             20352006--61366310034405223204887888536899846998885-32441765799999999999999


No 278
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=38.29  E-value=31  Score=15.53  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=16.7

Q ss_pred             CHHHHHCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf             3899842799999987212876298726
Q gi|254780812|r   44 NFLDMCYTPEYTVELTLQPIRRYNFDAA   71 (346)
Q Consensus        44 ~f~~~~~~pela~evtl~p~~r~~~Daa   71 (346)
                      -|-|...+|-   +-+-.-++.|+.|..
T Consensus        69 ~~~dv~~dp~---~wAKk~v~~~gaD~I   93 (322)
T PRK04452         69 PFGDVMNDPA---AWAKKCVEKYGADMI   93 (322)
T ss_pred             HHHHHHCCHH---HHHHHHHHHCCCCEE
T ss_conf             8645522999---999999987188789


No 279
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an 
Probab=38.23  E-value=31  Score=15.52  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHH-CCCCEEEE
Q ss_conf             999999999777775-49816784
Q gi|254780812|r  183 FLSDVSAEYLIAQIH-AGVDVIQI  205 (346)
Q Consensus       183 ~lt~~~~~yl~~Qi~-aGad~iqI  205 (346)
                      ..|+...+.+...++ .|+|.+.+
T Consensus        96 ~~t~~g~~Ni~~l~~~lgvD~i~~  119 (343)
T TIGR03573        96 WNTELGVKNLNNLIKKLGFDLHTI  119 (343)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             779899999999998369985874


No 280
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=38.05  E-value=31  Score=15.50  Aligned_cols=33  Identities=18%  Similarity=0.175  Sum_probs=22.8

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             77530137222899999999999999777775498167843831
Q gi|254780812|r  166 NRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTH  209 (346)
Q Consensus       166 ~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~  209 (346)
                      ...|+-++++.+.+|++.++.           .|+=+||+-|-+
T Consensus       101 vlqWlpdH~~ll~rL~~~L~P-----------gg~LAVQmPdN~  133 (257)
T COG4106         101 VLQWLPDHPELLPRLVSQLAP-----------GGVLAVQMPDNL  133 (257)
T ss_pred             HHHHCCCCHHHHHHHHHHHCC-----------CCEEEEECCCCC
T ss_conf             664436408999999985088-----------856999788764


No 281
>TIGR01693 UTase_glnD protein-P-II uridylyltransferase; InterPro: IPR010043   This entry describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for signal-transduction protein PII, and acts as the sensory component of the nitrogen regulation (ntr) system . The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. The activity of the PII protein is stimulated by glutamine and inhibited by 2-oxoglutarate. Under glutamate-limiting conditions, PII is uridylylated by GlnD leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters .   Not all homologues of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see IPR002332 from INTERPRO), but the modification site is preserved in the PII homologue of all species with a member of this family. ; GO: 0008773 [protein-PII] uridylyltransferase activity, 0006807 nitrogen compound metabolic process.
Probab=37.13  E-value=4.8  Score=21.23  Aligned_cols=44  Identities=32%  Similarity=0.614  Sum_probs=28.1

Q ss_pred             HHHHHHHHCCCCCCCCCCHH---HHHC---CCCCHHHHHHHHHCCCHHHHHC--CHH
Q ss_conf             57999996699899997614---6231---2345799999761553899842--799
Q gi|254780812|r    5 KQKILEVLQGNVINPPPIWL---MRQA---GRYLPEYRQIRKKFKNFLDMCY--TPE   53 (346)
Q Consensus         5 ~~~~l~al~g~~~~r~PVW~---MrQA---Grylpey~~~r~~~~~f~~~~~--~pe   53 (346)
                      ++.|++-++.-   +.++|.   |.++   |||+||+..++..++  +|+.|  |+|
T Consensus       408 ~~~Fl~ll~~~---~~~~~~l~~Mn~~GvLgR~lPef~~I~g~mQ--fdlfH~YTVD  459 (903)
T TIGR01693       408 REKFLELLTSG---NAIVRALRAMNRAGVLGRFLPEFGRIVGQMQ--FDLFHVYTVD  459 (903)
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHCCCHHHHCCCCCCCCCCCC--CCCEEEEECH
T ss_conf             89999986078---6278999986421602341343345037887--5762554102


No 282
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=36.62  E-value=32  Score=15.43  Aligned_cols=134  Identities=16%  Similarity=0.164  Sum_probs=68.7

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHH----CCCCEEE
Q ss_conf             3013722289999999999999977777549816784-3831100683567776127226899998630----8862360
Q gi|254780812|r  169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEHEFENYAARSVGRIISAVRRK----YPNAKFI  243 (346)
Q Consensus       169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~----~~~vpiI  243 (346)
                      -+|.+|+.+.++.+.+-.          .+++|++.+ |-+.-|.-.+. --+.-..-+++|-+.++++    ++++|+.
T Consensus       178 ~~yTdPeea~~fv~~tG~----------~~~vD~LAvaiGt~HG~Yk~g-~~~L~~~~L~~i~~~v~~~~~~~~~~vpLV  246 (340)
T cd00453         178 ALYTQPEDVDYAYTELSK----------ISPRFTIAASFGNVHGVYKKG-NVVLTPTILRDSQEYVSKKHNLPHNSLNFV  246 (340)
T ss_pred             CCCCCHHHHHHHHHHHCC----------CCCCCEEEEEECCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             455898999999998668----------888615776404455566899-985798999999999999738888887457


Q ss_pred             CCCCCCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HHH---CCCE--EEECC-----------CCHHHHC-CCHHHH
Q ss_conf             2431100001342014--78722304677998999---970---7984--69688-----------8846770-998899
Q gi|254780812|r  244 SFAKGAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LEL---QKEG--PVQGN-----------LDPMRLV-VGNQVM  301 (346)
Q Consensus       244 ~f~~g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~~---~~~~--~lqGN-----------ldP~~L~-~~~e~i  301 (346)
                      .| +|++.-.+++.+.  .|+.=+.+|...-+...   |+.   .++.  ..-||           +||...+ ...+.+
T Consensus       247 lH-GgSGvp~e~i~~ai~~GV~KiNIdTdlq~Aft~~vr~~~~~np~~~~~~~g~~~~~~~~~kk~fDPRk~l~~a~~am  325 (340)
T cd00453         247 FH-GGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSM  325 (340)
T ss_pred             EE-CCCCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             41-78899999999999829653235608899999999999985916440445786444577778789568769999999


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999997325
Q gi|254780812|r  302 IDGVNAILDVLGS  314 (346)
Q Consensus       302 ~~~~~~~l~~~~~  314 (346)
                      .+.++.-++.++.
T Consensus       326 ~~~v~~~~~~~gs  338 (340)
T cd00453         326 IARLEKAFQELNA  338 (340)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999998379


No 283
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=36.51  E-value=33  Score=15.34  Aligned_cols=130  Identities=15%  Similarity=0.207  Sum_probs=67.7

Q ss_pred             HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCC-C-----CCCH----HHHHCCC
Q ss_conf             777775498167843831100683567776127226899998630886236-024311-0-----0001----3420147
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKF-ISFAKG-A-----GYML----KNYRRLT  260 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g-~-----~~~l----~~~~~~~  260 (346)
                      +...+++|+|++ +||+..++..-           +-+++.+++ .++.|+ +.|+.. .     +..+    ..+.+..
T Consensus       151 i~~l~~~gvD~i-l~ET~~~~~E~-----------~~~~~~~~~-~~~~pv~~s~t~~~~~~l~~G~~l~~a~~~~~~~~  217 (308)
T PRK09485        151 IEALLDAGADLL-ALETIPNLDEA-----------EALVELLKE-FPQVPAWLSFTLRDGTHISDGTPLAEAAAALAAYP  217 (308)
T ss_pred             HHHHHHCCCCEE-EEEECCCHHHH-----------HHHHHHHHH-CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             999972789889-99603999999-----------999999985-57996899999768984189991999999997378


Q ss_pred             CCCEEECCCCCCHHHH-------HHH-CCCEEEECC----CCHHH----H-CCCHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf             8722304677998999-------970-798469688----88467----7-09988999999999997325992896089
Q gi|254780812|r  261 DSNAIGLDWSVPLSFA-------LEL-QKEGPVQGN----LDPMR----L-VVGNQVMIDGVNAILDVLGSGPFIFNLGH  323 (346)
Q Consensus       261 g~d~isiD~~~dl~~a-------~~~-~~~~~lqGN----ldP~~----L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGh  323 (346)
                      .++++++.- .+.+..       ++. ...+.++-|    .||..    . -.+++...+.+++.++.+..   |..==|
T Consensus       218 ~v~~vGiNC-~~p~~~~~~l~~l~~~~~~pi~~yPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~w~~~Ga~---iiGGCC  293 (308)
T PRK09485        218 QVVAVGINC-TAPELVTPAIATLKAVTDKPLIVYPNSGEVYDAVTKTWHGPREFSATLAEQAPEWLAAGAR---LIGGCC  293 (308)
T ss_pred             CCCEEEECC-CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE---EEEECC
T ss_conf             853686317-8999999999999970697799993899988975556678988999999999999987991---998886


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q ss_conf             7633668899999999997
Q gi|254780812|r  324 GITPQVDPKNVLDLVKTVR  342 (346)
Q Consensus       324 Gi~p~tp~eNv~~~v~~vr  342 (346)
                      |    |.||+|+++-+++|
T Consensus       294 G----t~P~hI~ala~~lk  308 (308)
T PRK09485        294 R----TTPEDIAALAAALK  308 (308)
T ss_pred             C----CCHHHHHHHHHHHC
T ss_conf             8----99999999999749


No 284
>PRK13946 shikimate kinase; Provisional
Probab=36.07  E-value=33  Score=15.30  Aligned_cols=168  Identities=15%  Similarity=0.203  Sum_probs=72.5

Q ss_pred             HHCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             21024-53201111479999999961246776524677530137222899999999999999777775498167843831
Q gi|254780812|r  131 RKKLP-NHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTH  209 (346)
Q Consensus       131 k~~l~-~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~  209 (346)
                      +..|+ +++-||||.|+==|...-.        ..+.+.+-+-|   .+++++.-             .|..+=.||+. 
T Consensus        15 ~~~l~kknIvLIG~mGsGKStvGk~--------LA~~L~~~fiD---~D~~IE~~-------------~g~sI~eIF~~-   69 (195)
T PRK13946         15 RAALGKRTVVLVGLMGAGKSTVGRR--------LATMLGLPFLD---ADTEIERA-------------ARMTIPEIFAT-   69 (195)
T ss_pred             HHHHCCCCEEEECCCCCCHHHHHHH--------HHHHHCCCEEE---CHHHHHHH-------------HCCCHHHHHHH-
T ss_conf             9985899589989999988999999--------99997979898---85999998-------------09989999998-


Q ss_pred             HHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCC-CCCCEEECCCCCCHHHHHH-HCC--CEEE
Q ss_conf             10068356777612722689999863088623602431100001342014-7872230467799899997-079--8469
Q gi|254780812|r  210 AGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRL-TDSNAIGLDWSVPLSFALE-LQK--EGPV  285 (346)
Q Consensus       210 ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~-~g~d~isiD~~~dl~~a~~-~~~--~~~l  285 (346)
                         -+.+.|++.-...++++.+    .. + -||-..+|+-..-+.+..+ ...-++-++  .+++...+ +..  ..++
T Consensus        70 ---~GE~~FR~~E~~~l~~l~~----~~-~-~VIstGGG~v~~~~n~~~L~~~g~vI~L~--~~~e~l~~Rl~~~~~RPL  138 (195)
T PRK13946         70 ---YGEPEFRDLERRVIARLLK----GG-P-LVLATGGGAFMNEETRAAIREKGISVWLK--ADLDVLWERVSRRDTRPL  138 (195)
T ss_pred             ---HCHHHHHHHHHHHHHHHHC----CC-C-EEEECCCCCCCCHHHHHHHHHCCEEEEEE--CCHHHHHHHHCCCCCCCC
T ss_conf             ---6979999989999999864----89-8-79975874236899999999579689984--999999999728999998


Q ss_pred             ECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             68888467709988999999999997325992896089763366889999999999730
Q gi|254780812|r  286 QGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSE  344 (346)
Q Consensus       286 qGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~~  344 (346)
                      -.+-||      .+.+++-..+=..-.....++.+.+.    .+|.+-++..++.+++|
T Consensus       139 l~~~~~------~~~l~~l~~~R~~lY~~Ad~~I~t~~----~s~~~ia~eIi~~L~~~  187 (195)
T PRK13946        139 LRTADP------KETLARLMEERYPVYAQADLTVESRD----VPHEVIADEVIEALAAY  187 (195)
T ss_pred             CCCCCH------HHHHHHHHHHHHHHHHHCCEEEECCC----CCHHHHHHHHHHHHHHH
T ss_conf             999887------99999999999999997898988998----99999999999999999


No 285
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.03  E-value=34  Score=15.29  Aligned_cols=146  Identities=14%  Similarity=0.219  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHH--HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------
Q ss_conf             7877787642102453-201111479999999--961246776524677530137222899999999999999-------
Q gi|254780812|r  122 PIFQSISILRKKLPNH-ITLIGFCGAPWTVAS--YMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY-------  191 (346)
Q Consensus       122 ~v~eAi~~~k~~l~~~-~pLIGF~GgP~Tlas--YmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y-------  191 (346)
                      -.+++|+.+++++.+. --+|| +|.=.|...  -.++-|  -+|.       --|-.-.++++.+.+.-+-|       
T Consensus        50 ~a~~~i~~l~~~~~~~p~~~iG-aGTV~~~e~~~~a~~aG--A~Fi-------VSP~~~~~v~~~a~~~~i~~iPG~~Tp  119 (209)
T PRK06552         50 FASEVIKELVERYKDDPEVLIG-AGTVLDAVTARQAILAG--AQFI-------VSPSFNRETAKICNRYQIPYLPGCMTV  119 (209)
T ss_pred             CHHHHHHHHHHHHCCCCCEEEE-EECCCCHHHHHHHHHCC--CCEE-------ECCCCCHHHHHHHHHCCCCEECCCCCH
T ss_conf             5999999999981779981898-87274899999999859--9889-------769998999999998599641797999


Q ss_pred             --HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC-CCCHHHHHCCCCCCEEECC
Q ss_conf             --7777754981678438311006835677761272268999986308862360243110-0001342014787223046
Q gi|254780812|r  192 --LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA-GYMLKNYRRLTDSNAIGLD  268 (346)
Q Consensus       192 --l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~-~~~l~~~~~~~g~d~isiD  268 (346)
                        +..-.++|++++.+|-  |+.+++++.+.+            +.-.|+++++- .+|. ...+.+|.+ .|+.++++.
T Consensus       120 sEi~~A~~~Ga~~vKlFP--A~~~G~~yikal------------~~p~p~~~~~p-tGGV~~~N~~~~l~-aG~~~vgvG  183 (209)
T PRK06552        120 TEIVTALEAGVDIVKLFP--GSTVGPSFISAI------------KGPLPQVNIMV-TGGVSLDNVKDWFA-AGADAVGIG  183 (209)
T ss_pred             HHHHHHHHCCCCEEEECC--HHHCCHHHHHHH------------HCCCCCCCEEE-CCCCCHHHHHHHHH-CCCCEEEEC
T ss_conf             999999986999588583--332489999998------------66489992886-38999888999998-799889986


Q ss_pred             CCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             7799899997079846968888467709988999999999997
Q gi|254780812|r  269 WSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDV  311 (346)
Q Consensus       269 ~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~  311 (346)
                      +..-                 .|. --+++++|.+.+++.+++
T Consensus       184 s~l~-----------------~~~-~~~d~~~I~~~A~~~v~a  208 (209)
T PRK06552        184 GELN-----------------KLA-SQGDYDLITEKAAKYIKS  208 (209)
T ss_pred             HHHC-----------------CCH-HCCCHHHHHHHHHHHHHH
T ss_conf             5770-----------------825-418999999999999972


No 286
>TIGR03617 F420_MSMEG_2256 probable F420-dependent oxidoreductase, MSMEG_2256 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by MSMEG_2256 from Mycobacterium smegmatis.
Probab=35.69  E-value=34  Score=15.25  Aligned_cols=46  Identities=15%  Similarity=0.171  Sum_probs=33.6

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             677099889999999999973259928960897633668899999999997
Q gi|254780812|r  292 MRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVR  342 (346)
Q Consensus       292 ~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr  342 (346)
                      ..+.|+++++.+..++..+.+.+. .++-.    +....+|-+++++|+.|
T Consensus       272 ~~~~Gtpee~~~rl~~~~~~GvD~-i~l~~----p~~~~~e~~~~~~~~~~  317 (318)
T TIGR03617       272 FAVVGPPEELAAALRARFGGLADR-VSLYF----PYPPGPEFVRALLDALR  317 (318)
T ss_pred             HCCCCCHHHHHHHHHHHHHCCCCE-EEEEC----CCCCCHHHHHHHHHHHC
T ss_conf             614458999999999999679998-99968----99988689999999853


No 287
>PRK05282 peptidase E; Validated
Probab=35.62  E-value=34  Score=15.25  Aligned_cols=10  Identities=10%  Similarity=0.109  Sum_probs=4.7

Q ss_pred             CCCEEEECCC
Q ss_conf             7984696888
Q gi|254780812|r  280 QKEGPVQGNL  289 (346)
Q Consensus       280 ~~~~~lqGNl  289 (346)
                      ++++.+.|+-
T Consensus       200 g~~~~L~G~~  209 (233)
T PRK05282        200 GGKATLGGPN  209 (233)
T ss_pred             CCEEEEECCC
T ss_conf             8989995687


No 288
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=35.37  E-value=34  Score=15.22  Aligned_cols=33  Identities=6%  Similarity=0.034  Sum_probs=19.7

Q ss_pred             CHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             83567776127226899998630886236024311
Q gi|254780812|r  214 GEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG  248 (346)
Q Consensus       214 s~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g  248 (346)
                      ..++|.++-...++-+.+.+++.  |+|++.=++|
T Consensus       313 ~de~yl~~Ri~qv~yl~~~L~~~--GVPvv~P~GG  345 (459)
T PRK13237        313 VQDDYIRHRIGQVRYLGEKLLAA--GVPIVEPVGG  345 (459)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHC--CCCEECCCCC
T ss_conf             36799998899999999999987--9970368985


No 289
>pfam02341 RcbX RbcX protein. The RBCX protein has been identified as having a possible chaperone-like function. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RuBisCO in Anabaena sp. CA. RbcX has been shown to possess a chaperone-like function assisting correct folding of RuBisCO in E. coli expression studies and is needed for RuBisCO to reach its maximal activity.
Probab=35.20  E-value=35  Score=15.20  Aligned_cols=75  Identities=13%  Similarity=0.228  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH---HHHHHHHHHHHHHHHC
Q ss_conf             7877787642102453201111479999999961246776524677530137222899999---9999999997777754
Q gi|254780812|r  122 PIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLD---FLSDVSAEYLIAQIHA  198 (346)
Q Consensus       122 ~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~---~lt~~~~~yl~~Qi~a  198 (346)
                      +-|+|++.+-.+|..--|=-    + .=|..|...++....-.-...++.++|+++.++|.   -+++-+.+|+-.++.+
T Consensus        17 lTYqAvrtVl~QL~EtNP~~----~-~WL~~Fsa~~~iqDGe~fl~~L~~E~~eLa~RImtvReHlae~v~~flpemvr~   91 (108)
T pfam02341        17 LTYQAVRTVLDQLSETNPPL----A-IWLHQFSASGKIQDGEAYLEELLLENPELALRIMTVREHLAEEVADFLPEMVRT   91 (108)
T ss_pred             HHHHHHHHHHHHHHCCCHHH----H-HHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999986258688----7-799988513898568999999986699999999999999999999885999999


Q ss_pred             CCC
Q ss_conf             981
Q gi|254780812|r  199 GVD  201 (346)
Q Consensus       199 Gad  201 (346)
                      |.+
T Consensus        92 ~iq   94 (108)
T pfam02341        92 GIQ   94 (108)
T ss_pred             HHH
T ss_conf             898


No 290
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=34.81  E-value=35  Score=15.16  Aligned_cols=78  Identities=22%  Similarity=0.250  Sum_probs=46.0

Q ss_pred             EEECCCCCCC-CCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCEEEECCC--CHHHHCCCHHHHHHHHHHHHHHHCCCC-
Q ss_conf             3602431100-001342014787223046779989999707984696888--846770998899999999999732599-
Q gi|254780812|r  241 KFISFAKGAG-YMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNL--DPMRLVVGNQVMIDGVNAILDVLGSGP-  316 (346)
Q Consensus       241 piI~f~~g~~-~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lqGNl--dP~~L~~~~e~i~~~~~~~l~~~~~~~-  316 (346)
                      .|..+-+|.. ..+..+.+ -|+++.-+-|..+.++.....++..+.-|=  ||..+...-    +.+++++   ++.| 
T Consensus       169 ~V~viD~GvK~nIlr~L~~-rg~~V~VvP~~~~~~~i~~~~pDGiflSNGPGDP~~~~~~i----~~vr~l~---~~~Pi  240 (356)
T PRK12838        169 HVALIDFGLKHSILRSLSK-RGCNVTVLPYNASLEDIKNLNPDGIVLSNGPGDPKELQPYL----PTIKDLA---SSYPI  240 (356)
T ss_pred             EEEEEECCCHHHHHHHHHH-CCCEEEEECCCCCCCHHHCCCCCEEEECCCCCCHHHHHHHH----HHHHHHH---CCCCE
T ss_conf             7999958836999999997-89889998998875402324974899438998968878899----9999997---49888


Q ss_pred             CEEEECCCCC
Q ss_conf             2896089763
Q gi|254780812|r  317 FIFNLGHGIT  326 (346)
Q Consensus       317 ~I~nLGhGi~  326 (346)
                      |=-.|||-++
T Consensus       241 fGICLGHQll  250 (356)
T PRK12838        241 LGICLGHQLI  250 (356)
T ss_pred             EEECHHHHHH
T ss_conf             9974889999


No 291
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=34.74  E-value=35  Score=15.15  Aligned_cols=185  Identities=15%  Similarity=0.185  Sum_probs=97.5

Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC----CCEEEE
Q ss_conf             4210245320111147999999996124677652467753013722289999999999999977777549----816784
Q gi|254780812|r  130 LRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG----VDVIQI  205 (346)
Q Consensus       130 ~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG----ad~iqI  205 (346)
                      -|++.++...+---+.||+-|..-...   ...              +..++..+...+-+|++.-+++-    +-+|.|
T Consensus       103 yke~~g~tl~VRVCVtGP~eLY~~~FG---~t~--------------y~Di~~~lA~sV~rFi~~A~k~aknf~i~~isi  165 (343)
T PRK06052        103 YKEETGETLEVRVCVTGPTELYLQEFG---GTR--------------YTDIYLILAKSVERFIRNAFKSAKNFKIAVISI  165 (343)
T ss_pred             HHHHCCCCCCEEEEECCCHHHHHHHHC---CCH--------------HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             888508855079994482799999848---820--------------899999999999999999986522772599974


Q ss_pred             CCCCHHHCCHHHHHHHHCCCHHHHHHHH-------HHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHH---
Q ss_conf             3831100683567776127226899998-------630886236024311000013420147872230467799899---
Q gi|254780812|r  206 FDTHAGCLGEHEFENYAARSVGRIISAV-------RRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSF---  275 (346)
Q Consensus       206 FDs~ag~Ls~~~f~~f~~p~~kkI~~~i-------k~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~---  275 (346)
                      =+++-|+=+.-+|.+      ..|+.++       ++.+.++-|-.|+   ...++..++ +.+++||+.+--+.+.   
T Consensus       166 DEPSlG~np~i~fse------~~Ii~AL~~as~~a~k~g~DvqIHLHS---Pl~Y~~~ce-tpInVIG~E~A~~Psyldl  235 (343)
T PRK06052        166 DEPSLGINPEIQFSE------AEIISALTVASKYARKQGADVEIHLHS---PLYYELICE-TPINVIGVESAGTPSYLDL  235 (343)
T ss_pred             CCCCCCCCCCCCCCH------HHHHHHHHHHHHHHHHCCCCEEEEECC---HHHHHHHHC-CCCEEEEEECCCCCHHHHH
T ss_conf             787778996568588------899999999999887438834899537---277777622-6511687620689278888


Q ss_pred             --HHHHCC-CEE------------EEC--------CC--CH----HHH--CCCHHHHHHHHHHHHHHHCCC-CCEEEECC
Q ss_conf             --997079-846------------968--------88--84----677--099889999999999973259-92896089
Q gi|254780812|r  276 --ALELQK-EGP------------VQG--------NL--DP----MRL--VVGNQVMIDGVNAILDVLGSG-PFIFNLGH  323 (346)
Q Consensus       276 --a~~~~~-~~~------------lqG--------Nl--dP----~~L--~~~~e~i~~~~~~~l~~~~~~-~~I~nLGh  323 (346)
                        .+.+-+ +..            +.|        |.  |+    ..+  +.+++.|++..++..+.+++. .| .+..|
T Consensus       236 iDkkvled~d~flR~GVaRTDI~sli~~~ne~y~~N~Wk~~eyl~~iv~elEtpe~IkkRLe~Ay~~fGdrikY-~gPDC  314 (343)
T PRK06052        236 IDKKVLEDSDTFLRLGVARTDIFSLIGILNEKYGTNAWKEKEYLQKIVTELETPEVIKKRLETAYSRFGDLIKY-AGPDC  314 (343)
T ss_pred             HHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCC
T ss_conf             71998850131203140277599999999887464411348889999971478899999999999998556641-48997


Q ss_pred             CCCCCCCH-------HHHHHHHHHHH
Q ss_conf             76336688-------99999999997
Q gi|254780812|r  324 GITPQVDP-------KNVLDLVKTVR  342 (346)
Q Consensus       324 Gi~p~tp~-------eNv~~~v~~vr  342 (346)
                      |+...-+.       +|+..=|++-|
T Consensus       315 GL~swP~QelAf~lL~N~akgi~~f~  340 (343)
T PRK06052        315 GLGSWPDQELAFRLLENVAKGINEFR  340 (343)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             76778638899999999999999986


No 292
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=34.10  E-value=36  Score=15.08  Aligned_cols=139  Identities=17%  Similarity=0.138  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHH
Q ss_conf             89999999999999977777549816784383110068356777612722689999863088623602431100001342
Q gi|254780812|r  177 FNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNY  256 (346)
Q Consensus       177 ~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~  256 (346)
                      .|.-|..|+..++   .+.+++|.-++.++=+...    -.--++...|+..|.+.+++-  =+|++|  ++.   .  +
T Consensus        75 ~~~am~~L~~~V~---~~l~~~Gv~av~~~P~s~~----~~~gr~~~~~l~~i~~~l~~g--fvPvl~--GDV---v--~  138 (252)
T COG1608          75 THLAMLELNSIVV---DALLDAGVRAVSVVPISFS----TFNGRILYTYLEAIKDALEKG--FVPVLY--GDV---V--P  138 (252)
T ss_pred             HHHHHHHHHHHHH---HHHHHCCCCCCCCCCCCEE----ECCCCEEECHHHHHHHHHHCC--CEEEEE--CCE---E--E
T ss_conf             9999999999999---9998669853222686403----317703220299999998769--876233--346---8--7


Q ss_pred             HCCCCCCEEECCCCCCHHHHHHHCCCEEEEC-----CC--CHH---------------HHCCCH-----HHHHHHHHHHH
Q ss_conf             0147872230467799899997079846968-----88--846---------------770998-----89999999999
Q gi|254780812|r  257 RRLTDSNAIGLDWSVPLSFALELQKEGPVQG-----NL--DPM---------------RLVVGN-----QVMIDGVNAIL  309 (346)
Q Consensus       257 ~~~~g~d~isiD~~~dl~~a~~~~~~~~lqG-----Nl--dP~---------------~L~~~~-----e~i~~~~~~~l  309 (346)
                      .+..|+.++|=|.-+ +.-|+++.++.++-+     =+  ||.               .+-++.     --+.+.++.++
T Consensus       139 d~~~g~~IiSGDdIv-~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~  217 (252)
T COG1608         139 DDDNGYEIISGDDIV-LHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALL  217 (252)
T ss_pred             CCCCCEEEEECCHHH-HHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             489854898511899-9999974987799984578235689874866200014432343068676213133999999999


Q ss_pred             HHHCC-CC-CEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             97325-99-28960897633668899999999
Q gi|254780812|r  310 DVLGS-GP-FIFNLGHGITPQVDPKNVLDLVK  339 (346)
Q Consensus       310 ~~~~~-~~-~I~nLGhGi~p~tp~eNv~~~v~  339 (346)
                      +..+. .+ ||||-       -.+||+..++.
T Consensus       218 ~~~~~~~~vyi~ng-------~~~~ni~~~l~  242 (252)
T COG1608         218 EIARYGKEVYIFNG-------NKPENIYRALR  242 (252)
T ss_pred             HHHHCCCEEEEECC-------CCHHHHHHHHC
T ss_conf             98735863899878-------77778999965


No 293
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=33.98  E-value=36  Score=15.07  Aligned_cols=10  Identities=30%  Similarity=0.424  Sum_probs=5.7

Q ss_pred             CCCEEECCCC
Q ss_conf             8722304677
Q gi|254780812|r  261 DSNAIGLDWS  270 (346)
Q Consensus       261 g~d~isiD~~  270 (346)
                      +++++=+|+-
T Consensus       205 ~~~~IrlD~~  214 (281)
T cd00516         205 GADGIRLDSG  214 (281)
T ss_pred             CCCEEEECCC
T ss_conf             9999997979


No 294
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=33.74  E-value=36  Score=15.04  Aligned_cols=41  Identities=24%  Similarity=0.433  Sum_probs=16.2

Q ss_pred             EEEECCCCHH---HCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCC
Q ss_conf             6784383110---06835677761272268999986308862360243110000
Q gi|254780812|r  202 VIQIFDTHAG---CLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYM  252 (346)
Q Consensus       202 ~iqIFDs~ag---~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~  252 (346)
                      +.-+.++.||   .+.. .|+++     .+|++.+...    .-+.+|=++.|.
T Consensus       134 ~~lllEntAGqG~~lG~-~~eeL-----~~ii~~~~~~----~rvgvClDTcH~  177 (273)
T smart00518      134 VVILLETTAGKGSQIGS-TFEDL-----KEIIDLIKEL----DRIGVCIDTCHI  177 (273)
T ss_pred             CEEEEECCCCCCCCCCC-CHHHH-----HHHHHHCCCC----CCEEEEEECHHH
T ss_conf             67997457899884686-89999-----9999973784----653787520202


No 295
>PRK13238 tnaA tryptophanase; Provisional
Probab=33.64  E-value=36  Score=15.03  Aligned_cols=33  Identities=12%  Similarity=0.214  Sum_probs=19.3

Q ss_pred             CHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             83567776127226899998630886236024311
Q gi|254780812|r  214 GEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG  248 (346)
Q Consensus       214 s~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g  248 (346)
                      ..++|.+|-....+-+.+.+++.  |+|++.=++|
T Consensus       314 ~d~dyl~~Ri~qv~yLg~~L~~~--GVPvv~P~GG  346 (461)
T PRK13238        314 MDEDYLAYRIAQVEYLGEGLEEA--GVPVVTPAGG  346 (461)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHC--CCCEECCCCC
T ss_conf             07799997799999999999977--9970567985


No 296
>pfam07555 NAGidase beta-N-acetylglucosaminidase. This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity.
Probab=33.34  E-value=37  Score=15.00  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=56.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHHH---H---HHHHCCCHHHHHHHHHHHCCC----
Q ss_conf             13722289999999999999977777549816784-383110068356---7---776127226899998630886----
Q gi|254780812|r  171 YQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEHE---F---ENYAARSVGRIISAVRRKYPN----  239 (346)
Q Consensus       171 ~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~~---f---~~f~~p~~kkI~~~ik~~~~~----  239 (346)
                      ++.++....|+.|+..+        .+.|+..+.| ||--.+.+....   |   -+--...++++.+++.+...+    
T Consensus        84 ~~~~~d~~~L~~K~~ql--------~~~Gvr~failfDDI~~~~~~~~~~~~~~~~~~qa~l~n~v~~~l~~~~~~~~~l  155 (306)
T pfam07555        84 YSSEEDLQALLAKFEQL--------YDLGVRSFAVLFDDIEYTLWNADKRRFGSFAEAQADLLNKVQKEFIKPKGDVYPL  155 (306)
T ss_pred             CCCHHHHHHHHHHHHHH--------HHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             37899999999999999--------9749998999721687544654211134179999999999999986406888855


Q ss_pred             --CEEECCCCCCCC-CHHHHHC---------CCCCCEEECCC-CCCHHHHHH-HCCCEEEECCC
Q ss_conf             --236024311000-0134201---------47872230467-799899997-07984696888
Q gi|254780812|r  240 --AKFISFAKGAGY-MLKNYRR---------LTDSNAIGLDW-SVPLSFALE-LQKEGPVQGNL  289 (346)
Q Consensus       240 --vpiI~f~~g~~~-~l~~~~~---------~~g~d~isiD~-~~dl~~a~~-~~~~~~lqGNl  289 (346)
                        ||..|...+.+. .+..+.+         .||..++|-.- ..+++.+++ ++.+.++==|.
T Consensus       156 ~~cPt~Y~~~~~~~~Yl~~l~~~Ld~~I~V~WTG~~VvS~~it~~~~~~~~~~~~r~~~iWDNy  219 (306)
T pfam07555       156 IFCPTEYNGSWASPDYLQTLGETLDPDIDIMWTGDRVVSGEITVEDAEEVSEVLGRKPFIWDNY  219 (306)
T ss_pred             EEECHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCEECCCCCHHHHHHHHHHHCCCCEEEECC
T ss_conf             8969323378999799999986489986599448964588669999999999848998699673


No 297
>pfam08610 Pex16 Peroxisomal membrane protein (Pex16). Pex16 is a peripheral protein located at the matrix face of the peroxisomal membrane.
Probab=33.14  E-value=22  Score=16.51  Aligned_cols=34  Identities=6%  Similarity=0.276  Sum_probs=23.5

Q ss_pred             HCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             0683567776127226899998630886236024311
Q gi|254780812|r  212 CLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG  248 (346)
Q Consensus       212 ~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g  248 (346)
                      ++-.-.|++|..+-+..+...+.+   .+|++.+.++
T Consensus       253 lmRsPFyd~~Tr~~i~~~l~~l~~---~vPl~glv~~  286 (298)
T pfam08610       253 LMRGPFYDNYTKSKLESLLRRLEN---HVPLLGLVGR  286 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC---CCCCHHHHHH
T ss_conf             986689887579999999999734---7983368788


No 298
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244    This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=33.04  E-value=37  Score=14.97  Aligned_cols=33  Identities=15%  Similarity=0.270  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHH
Q ss_conf             432378777876421024--53201111479999999
Q gi|254780812|r  118 NYLLPIFQSISILRKKLP--NHITLIGFCGAPWTVAS  152 (346)
Q Consensus       118 ~~l~~v~eAi~~~k~~l~--~~~pLIGF~GgP~Tlas  152 (346)
                      ..|.|+.+-++.+|++.+  +++-|=||.  |-=+..
T Consensus        71 ssl~yy~~l~~~Ik~~~pPyG~~hiHafS--p~Ev~f  105 (331)
T TIGR00423        71 SSLEYYEELFRAIKQEFPPYGDVHIHAFS--PMEVYF  105 (331)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCEEEECCC--HHHHHH
T ss_conf             14999999999997417896524761468--689999


No 299
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative; InterPro: IPR010962    Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy .   PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic .   This entry contains a number of enzyme families:  Serine palmitoyltransferase Glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 5-aminolevulinic acid synthase 8-amino-7-oxononanoate synthase    All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.; GO: 0016740 transferase activity, 0030170 pyridoxal phosphate binding.
Probab=32.98  E-value=37  Score=14.96  Aligned_cols=52  Identities=29%  Similarity=0.485  Sum_probs=32.7

Q ss_pred             CCEEEE-CCCCHHH-HCC----CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             984696-8888467-709----98899999999999732599289608976336688999999999973
Q gi|254780812|r  281 KEGPVQ-GNLDPMR-LVV----GNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       281 ~~~~lq-GNldP~~-L~~----~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~  343 (346)
                      +++.+| |-|+=.. ..|    +++++++..++     +.+||.||+.      .||--+.|+++||..
T Consensus       228 ~~v~~qvGTLSKA~GvvGGY~AG~~~lidyL~~-----~aRPFLFSta------~~Pa~~~A~~~Av~~  285 (392)
T TIGR01825       228 DKVDIQVGTLSKAIGVVGGYVAGSKELIDYLKA-----RARPFLFSTA------LPPAVVAALIEAVDV  285 (392)
T ss_pred             CCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHH-----CCCCCCCCCC------CCHHHHHHHHHHHHH
T ss_conf             646788555223222566423488899999986-----2898601257------880789999999998


No 300
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=32.85  E-value=38  Score=14.95  Aligned_cols=136  Identities=16%  Similarity=0.187  Sum_probs=65.0

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHHHHH-HHHCCCHHHHHHHHHHHC---CCC--
Q ss_conf             53013722289999999999999977777549816784-38311006835677-761272268999986308---862--
Q gi|254780812|r  168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEHEFE-NYAARSVGRIISAVRRKY---PNA--  240 (346)
Q Consensus       168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~~f~-~f~~p~~kkI~~~ik~~~---~~v--  240 (346)
                      .-+|.+|+.+.++.+..          ...+|+|++.+ |-+.-|.-.+.... ++  .-..++.+.++++.   .++  
T Consensus       179 ~~~yT~Peea~~f~~~~----------~~~tgvd~LAvaiGt~HG~Yk~g~~kL~p--~ll~~~~~~i~~~~~~~~~~pi  246 (345)
T cd00946         179 AELYTQPEDVWYVYEAL----------SKISPNFSIAAAFGNVHGVYKPGNVKLQP--EILGEHQDYVREKLGLADDKPL  246 (345)
T ss_pred             HHCCCCHHHHHHHHHHH----------CCCCCCCEEEEEECCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCC
T ss_conf             21279999999999996----------36777605655311245434688888882--6778899999999566667873


Q ss_pred             EEECCCCCCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HH-H--CCCE--EEEC-----------CCCHHHHC-CCH
Q ss_conf             3602431100001342014--78722304677998999---97-0--7984--6968-----------88846770-998
Q gi|254780812|r  241 KFISFAKGAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LE-L--QKEG--PVQG-----------NLDPMRLV-VGN  298 (346)
Q Consensus       241 piI~f~~g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~-~--~~~~--~lqG-----------NldP~~L~-~~~  298 (346)
                      |+..| +|++.-.+++.+.  .|+.=+.+|...-+...   |+ +  .++.  .--|           .+||...+ ...
T Consensus       247 pLVLH-GgSGvp~e~i~~AI~~GV~KINI~Tdlr~Aft~air~~~~~~~d~~~~~~g~p~~~~~pn~k~fDPRk~l~~a~  325 (345)
T cd00946         247 YFVFH-GGSGSTKEEIREAISYGVVKMNIDTDTQWAYWEGVRNYYLKNEDYLQGQIGNPEGPDKPNKKYYDPRVWLREGE  325 (345)
T ss_pred             EEEEC-CCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             07851-89999999999999839563345708899999999999984704440245886555788767789578779999


Q ss_pred             HHHHHHHHHHHHHHCCCC
Q ss_conf             899999999999732599
Q gi|254780812|r  299 QVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       299 e~i~~~~~~~l~~~~~~~  316 (346)
                      +.+++-+++-++.++..+
T Consensus       326 ~am~~~v~~k~~~~gs~g  343 (345)
T cd00946         326 KSMVARVKKAFEDLNSVN  343 (345)
T ss_pred             HHHHHHHHHHHHHHCCCC
T ss_conf             999999999999818999


No 301
>pfam01702 TGT Queuine tRNA-ribosyltransferase. This is a family of queuine tRNA-ribosyltransferases EC:2.4.2.29, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine. It catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues.
Probab=32.65  E-value=38  Score=14.93  Aligned_cols=36  Identities=11%  Similarity=0.074  Sum_probs=17.1

Q ss_pred             CCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf             623602431100001342014787223046779989999
Q gi|254780812|r  239 NAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFAL  277 (346)
Q Consensus       239 ~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~  277 (346)
                      +.|...+..|.-..+..... .|+|.  +|...+-..|+
T Consensus       113 ~kPr~l~G~g~P~~i~~~v~-~GiD~--FD~~~ptr~Ar  148 (238)
T pfam01702       113 DKPRYLMGVGTPEDILEAVA-LGVDM--FDCVFPTRYAR  148 (238)
T ss_pred             CCCEEECCCCCHHHHHHHHH-HCCCC--EECCCHHHHHH
T ss_conf             78564069999999999999-58881--00341379984


No 302
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=32.53  E-value=25  Score=16.14  Aligned_cols=58  Identities=21%  Similarity=0.316  Sum_probs=32.5

Q ss_pred             HHHHHHHCCCCCCCCCCH-HHHHC---CCCCHHHHHHHHHCCCHHHHHC--CHHHHHHHHHHHHHHC
Q ss_conf             799999669989999761-46231---2345799999761553899842--7999999872128762
Q gi|254780812|r    6 QKILEVLQGNVINPPPIW-LMRQA---GRYLPEYRQIRKKFKNFLDMCY--TPEYTVELTLQPIRRY   66 (346)
Q Consensus         6 ~~~l~al~g~~~~r~PVW-~MrQA---Grylpey~~~r~~~~~f~~~~~--~pela~evtl~p~~r~   66 (346)
                      +.|+..++... .-.++| .|.+.   |||+||+..++..++  +|+.|  |++-=+=-++.-+++|
T Consensus       412 ~~Fl~iL~~~~-~~~~~Lr~M~~~GvLg~~iPef~~I~g~mQ--fD~yH~YTVDeHtl~~v~~L~~~  475 (894)
T PRK00275        412 SLFIELFKCPH-GIHRNLRRMNRYGILGRYLPEFGHIVGQMQ--HDLFHIYTVDAHTLNLIKHLRKL  475 (894)
T ss_pred             HHHHHHHHCCC-CHHHHHHHHHHCCCHHHCCCCHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999970888-779999999875973310996776525524--44100261217799999999998


No 303
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=32.41  E-value=38  Score=14.90  Aligned_cols=65  Identities=14%  Similarity=0.110  Sum_probs=33.0

Q ss_pred             HHHHHHHCCCCCCCCCCH-----HHHHCCCCC-HHHHHHHHHCCCHHHHHCC-HHH--HHHHHHHHHHHCCCCEEEE
Q ss_conf             799999669989999761-----462312345-7999997615538998427-999--9998721287629872652
Q gi|254780812|r    6 QKILEVLQGNVINPPPIW-----LMRQAGRYL-PEYRQIRKKFKNFLDMCYT-PEY--TVELTLQPIRRYNFDAAIL   73 (346)
Q Consensus         6 ~~~l~al~g~~~~r~PVW-----~MrQAGryl-pey~~~r~~~~~f~~~~~~-pel--a~evtl~p~~r~~~DaaIl   73 (346)
                      .+++++++.+..+ .-+|     .|++||--. -++.++- -+ .|.|.-.. |.+  ...-+..-++.+..|++|+
T Consensus        18 a~li~~Lk~~~~~-~~~~GiGG~~M~~~G~~~l~d~~~l~-vm-G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~   91 (382)
T PRK00025         18 AGLIRALKAQAPN-LEFVGIGGPRMEAAGFESLFDMEELA-VM-GLVEVLPRLPRLLKIRKELKRLLLAEPPDVFIL   91 (382)
T ss_pred             HHHHHHHHHHCCC-CEEEEECCHHHHHCCCCCCCCHHHHH-HC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9999999831989-67999882999976995447757831-30-199999779999999999999998649999999


No 304
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily; InterPro: IPR004799 Periplasmic protein thiol:disulphide oxidoreductase is involved in the biogenesis of c-type cytochromes as well as in disulphide bond formation in some periplasmic proteins. This group defines the DsbE subfamily.; GO: 0015036 disulfide oxidoreductase activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space.
Probab=32.13  E-value=39  Score=14.87  Aligned_cols=21  Identities=0%  Similarity=0.040  Sum_probs=11.1

Q ss_pred             HCCCCEEEECCCCHHHCCHHH
Q ss_conf             549816784383110068356
Q gi|254780812|r  197 HAGVDVIQIFDTHAGCLGEHE  217 (346)
Q Consensus       197 ~aGad~iqIFDs~ag~Ls~~~  217 (346)
                      +.+.-.|.+|=|||.-+-.|+
T Consensus        63 qG~~~LlNVWAsWCp~CraEH   83 (175)
T TIGR00385        63 QGKPVLLNVWASWCPPCRAEH   83 (175)
T ss_pred             CCCEEEEEEEECCCCCCHHCC
T ss_conf             896069988403688831000


No 305
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=32.06  E-value=32  Score=15.46  Aligned_cols=58  Identities=16%  Similarity=0.287  Sum_probs=31.5

Q ss_pred             HHHHHHHCCCCCCCCCCH-HHHHC---CCCCHHHHHHHHHCCCHHHHHC--CHHHHHHHHHHHHHHC
Q ss_conf             799999669989999761-46231---2345799999761553899842--7999999872128762
Q gi|254780812|r    6 QKILEVLQGNVINPPPIW-LMRQA---GRYLPEYRQIRKKFKNFLDMCY--TPEYTVELTLQPIRRY   66 (346)
Q Consensus         6 ~~~l~al~g~~~~r~PVW-~MrQA---Grylpey~~~r~~~~~f~~~~~--~pela~evtl~p~~r~   66 (346)
                      ++|++-++... .-.++| .|.+.   |||+||+.+++..++  +|+.|  |++-=+=-++.-+++|
T Consensus       396 ~~F~~il~~p~-~~~~~l~~M~~~GvL~~yiPef~~I~g~mQ--fDlfH~YTVDeHtl~~v~~l~~~  459 (862)
T PRK01759        396 ERFLRLFNQPN-AIKRALVPMHQYGVLTAYLPQWKHIEGLMQ--FDLFHIYTVDEHTLRVMLKLESF  459 (862)
T ss_pred             HHHHHHHCCCC-CHHHHHHHHHHHCCHHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999982988-579999999982878988478887743647--54355784768999999999998


No 306
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=31.92  E-value=39  Score=14.84  Aligned_cols=216  Identities=16%  Similarity=0.195  Sum_probs=98.8

Q ss_pred             CCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCCCEEEECCCCCCCC
Q ss_conf             97614623123457999997615538998427999999872128762987265213320010432443373168875222
Q gi|254780812|r   20 PPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMD   99 (346)
Q Consensus        20 ~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~~v~f~~~~GP~~~   99 (346)
                      +++-+==.||-.-..||.+-..++++ ++|.++-.++...+.+-+.+-.+-                  ...++..|+.=
T Consensus        11 ~~~~lAPM~gvtd~~fR~l~~~~ga~-~l~~TEmv~~~~~~~~~~~~~~~~------------------~~~~~e~p~~v   71 (323)
T COG0042          11 NRVILAPMAGVTDLPFRRLARELGAY-DLLYTEMVSAKALLHGRKKFLLLL------------------DELEEERPVAV   71 (323)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHCCC-CEEEEEEEECCHHHCCCHHHHHCC------------------CCCCCCCCEEE
T ss_conf             87788348898668999999995887-528974045304552770044305------------------64566787799


Q ss_pred             CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             33333554205670123443237877787642102453201111479999999961246776524677530137222899
Q gi|254780812|r  100 PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNW  179 (346)
Q Consensus       100 p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~  179 (346)
                      .+..              +......+|.+++-+.-.+.+-|  =+|.|--...   .    ..+-.   .+.++|+.+.+
T Consensus        72 Ql~g--------------sdp~~laeaA~~~~~~g~~~IDl--N~GCP~~~V~---~----~g~Ga---~Ll~~p~lv~~  125 (323)
T COG0042          72 QLGG--------------SDPELLAEAAKIAEELGADIIDL--NCGCPSPKVV---K----GGAGA---ALLKNPELLAE  125 (323)
T ss_pred             EECC--------------CCHHHHHHHHHHHHHCCCCEEEE--ECCCCCHHHH---C----CCCCH---HHCCCHHHHHH
T ss_conf             9738--------------99899999999998669998987--6899928980---8----98447---77179899999


Q ss_pred             HHHHHHHHH--------------------HHHHHHHHHCCCCEEEECC--CCHHHCCHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             999999999--------------------9997777754981678438--311006835677761272268999986308
Q gi|254780812|r  180 LLDFLSDVS--------------------AEYLIAQIHAGVDVIQIFD--THAGCLGEHEFENYAARSVGRIISAVRRKY  237 (346)
Q Consensus       180 ll~~lt~~~--------------------~~yl~~Qi~aGad~iqIFD--s~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~  237 (346)
                      +++.+.+.+                    .+.++.--++||+++-|==  .|-+-.++.+|         ..+..+|+..
T Consensus       126 iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~G~~~ltVHgRtr~~~y~~~a~~---------~~I~~vk~~~  196 (323)
T COG0042         126 IVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADW---------DYIKELKEAV  196 (323)
T ss_pred             HHHHHHHHCCCCCEEEEEECCCCCHHCCHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCH---------HHHHHHHHHC
T ss_conf             9999998538887499985787800200999999999679878999556676468986487---------9999999867


Q ss_pred             CCCEEECCCC-CCCCCHHHHHCCCCCCEEECCCC--CCHHHHHHHCCCEEEECCCCH
Q ss_conf             8623602431-10000134201478722304677--998999970798469688884
Q gi|254780812|r  238 PNAKFISFAK-GAGYMLKNYRRLTDSNAIGLDWS--VPLSFALELQKEGPVQGNLDP  291 (346)
Q Consensus       238 ~~vpiI~f~~-g~~~~l~~~~~~~g~d~isiD~~--~dl~~a~~~~~~~~lqGNldP  291 (346)
                      +++|+|.-.- .+......+.+.+|+|.+-+.--  -++.-.+++  +..-.|...|
T Consensus       197 ~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i--~~~~~g~~~~  251 (323)
T COG0042         197 PSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI--DYLETGELLP  251 (323)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHHHHHH--HHHCCCCCCC
T ss_conf             997598579949999999999841898799743531695575533--5530688788


No 307
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=31.54  E-value=39  Score=14.80  Aligned_cols=59  Identities=12%  Similarity=0.186  Sum_probs=29.4

Q ss_pred             HCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC--CCEEECCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf             549816784383110068356777612722689999863088--623602431100001342014787223046
Q gi|254780812|r  197 HAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP--NAKFISFAKGAGYMLKNYRRLTDSNAIGLD  268 (346)
Q Consensus       197 ~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~--~vpiI~f~~g~~~~l~~~~~~~g~d~isiD  268 (346)
                      +.++|+|.+-    ..++      ..+|-++++++.+++...  ++|++.  +|.. .-+++.+..|+|+..-|
T Consensus       131 ~~~~divglS----~~~~------~~~~~~~~~i~~lr~~~~~~~v~i~v--GG~a-~~~~~a~~~GAD~~a~d  191 (201)
T cd02070         131 EHKPDILGLS----ALMT------TTMGGMKEVIEALKEAGLRDKVKVMV--GGAP-VNQEFADEIGADGYAED  191 (201)
T ss_pred             HHCCCEEEEE----CCCC------CCHHHHHHHHHHHHHCCCCCCCEEEE--ECCC-CCHHHHHHHCCCEECCC
T ss_conf             7298999996----2566------88999999999999728988985999--8801-79999999298878479


No 308
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=31.24  E-value=20  Score=16.87  Aligned_cols=46  Identities=22%  Similarity=0.303  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             9999999961246776524677530137222899999999999999777775498167
Q gi|254780812|r  146 APWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVI  203 (346)
Q Consensus       146 gP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~i  203 (346)
                      |.|||+|    |.-|.-|...+ .+..+|+..+.+.+.+.+.+.+       .+.|+|
T Consensus        21 G~F~L~S----G~~S~~Y~d~~-~l~~~p~~~~~i~~~~~~~i~~-------~~~d~I   66 (200)
T PRK00455         21 GHFTLSS----GRKSPYYFDCR-KLFNYPEALALLGRFLAEAIKD-------SGIDFV   66 (200)
T ss_pred             CCEEECC----CCCCHHHHCCH-HHHHCHHHHHHHHHHHHHHHHH-------CCCCEE
T ss_conf             9688677----47561671888-9886999999999999999754-------499899


No 309
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=31.20  E-value=40  Score=14.76  Aligned_cols=29  Identities=21%  Similarity=0.080  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHCC----CCCEEEECCCCC
Q ss_conf             88999999999997325----992896089763
Q gi|254780812|r  298 NQVMIDGVNAILDVLGS----GPFIFNLGHGIT  326 (346)
Q Consensus       298 ~e~i~~~~~~~l~~~~~----~~~I~nLGhGi~  326 (346)
                      .+.+.+-.-.+|++++-    .-||-..|||=+
T Consensus       487 ~~~~~~laF~ILQAaR~R~sKTEYISCPSCGRT  519 (606)
T PRK00694        487 LSDVRTIAFGTLQSAGVRLVKTEYISCPGCGRT  519 (606)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
T ss_conf             778888888888875744335616658987752


No 310
>pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family.
Probab=31.19  E-value=40  Score=14.76  Aligned_cols=51  Identities=22%  Similarity=0.298  Sum_probs=26.4

Q ss_pred             HHHHHHCCCCEEEECCCCHH----HCCHHH---HHHH------HCCCHHHHHHHHHHHCC-CCEE
Q ss_conf             77777549816784383110----068356---7776------12722689999863088-6236
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAG----CLGEHE---FENY------AARSVGRIISAVRRKYP-NAKF  242 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag----~Ls~~~---f~~f------~~p~~kkI~~~ik~~~~-~vpi  242 (346)
                      ++.-.+||.|.|+|-=..+-    .|||..   =++|      =..+..+|++++++..+ +.|+
T Consensus       149 A~rA~~AGfDGVEIh~ahGyLl~QFLSp~~N~RtDeYGGslENR~Rf~~eIi~aIR~~vg~d~~i  213 (336)
T pfam00724       149 AKRAVEAGFDGVEIHGAHGYLLDQFLSPGSNKRTDEYGGSIENRARFPLEVVDAVKEAVGEDRPI  213 (336)
T ss_pred             HHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999829998996142678999862876588977678898897548999999999972877664


No 311
>KOG0628 consensus
Probab=31.18  E-value=40  Score=14.76  Aligned_cols=38  Identities=21%  Similarity=0.200  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCEECCH---------HHCCCEEEE
Q ss_conf             9999998721287629872652133200104---------324433731
Q gi|254780812|r   52 PEYTVELTLQPIRRYNFDAAILFSDILVIAD---------ALGRNVRFV   91 (346)
Q Consensus        52 pela~evtl~p~~r~~~DaaIlFsDIl~~~e---------alG~~v~f~   91 (346)
                      |-+.+++.-..+--.||+=+  =|-+++.+|         -||+.-+|.
T Consensus        87 ~siladmLs~~i~~vGFtW~--ssPa~TELE~ivmDWL~kml~LP~~Fl  133 (511)
T KOG0628          87 PSILADMLSGGIGCVGFTWA--SSPACTELEVIVMDWLGKMLGLPAEFL  133 (511)
T ss_pred             HHHHHHHHHCCCCCCCCEEE--CCCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             77999998500233441242--584067899999999999851809874


No 312
>KOG2673 consensus
Probab=31.02  E-value=28  Score=15.81  Aligned_cols=28  Identities=36%  Similarity=0.654  Sum_probs=22.8

Q ss_pred             HHHHCCCCCCCCCCHH--HHHCCCCCHHHHH
Q ss_conf             9996699899997614--6231234579999
Q gi|254780812|r    9 LEVLQGNVINPPPIWL--MRQAGRYLPEYRQ   37 (346)
Q Consensus         9 l~al~g~~~~r~PVW~--MrQAGrylpey~~   37 (346)
                      +|++-|-..+-+|-|+  ||-+| |=|.|-.
T Consensus       189 ~R~al~l~~~d~P~~~yRMR~lG-YPPg~L~  218 (485)
T KOG2673         189 TRSALGLSPGDPPEWKYRMRRLG-YPPGYLR  218 (485)
T ss_pred             HHHHHCCCCCCCHHHHHHHHHCC-CCCHHHH
T ss_conf             77763589999558888876326-9911200


No 313
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=30.86  E-value=40  Score=14.73  Aligned_cols=14  Identities=7%  Similarity=-0.171  Sum_probs=8.9

Q ss_pred             CCCCCCEEECCCCC
Q ss_conf             14787223046779
Q gi|254780812|r  258 RLTDSNAIGLDWSV  271 (346)
Q Consensus       258 ~~~g~d~isiD~~~  271 (346)
                      ...|+|++.+.++.
T Consensus       226 ~~~g~dGvi~tNTt  239 (327)
T cd04738         226 LEHGVDGIIATNTT  239 (327)
T ss_pred             HHCCCCEEEEECCC
T ss_conf             97399789995885


No 314
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.67  E-value=41  Score=14.70  Aligned_cols=11  Identities=18%  Similarity=0.114  Sum_probs=4.9

Q ss_pred             CCCCEEECCCC
Q ss_conf             78722304677
Q gi|254780812|r  260 TDSNAIGLDWS  270 (346)
Q Consensus       260 ~g~d~isiD~~  270 (346)
                      .|+|.+=+|+-
T Consensus       218 ~g~d~ImLDNm  228 (288)
T PRK06978        218 HGAQSVLLDNF  228 (288)
T ss_pred             CCCCEEEECCC
T ss_conf             89999995799


No 315
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=30.53  E-value=41  Score=14.69  Aligned_cols=46  Identities=7%  Similarity=0.044  Sum_probs=25.1

Q ss_pred             CCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf             2722689999863088623602431100001342014787223046
Q gi|254780812|r  223 ARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLD  268 (346)
Q Consensus       223 ~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD  268 (346)
                      .+...++++.+|+..|+++++.-.-..+..-+.+.+..++|.+-++
T Consensus        52 ~~~~~~~~~~~k~~~p~~~iv~GG~h~t~~p~~~l~~~~~D~vv~G   97 (127)
T cd02068          52 IYEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIG   97 (127)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCEEEEC
T ss_conf             9999999999999789978998598745499999707587789968


No 316
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.43  E-value=41  Score=14.68  Aligned_cols=67  Identities=21%  Similarity=0.249  Sum_probs=46.3

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCC
Q ss_conf             75301372228999999999999997777754981678438311006835677761272268999986308862360243
Q gi|254780812|r  167 RVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFA  246 (346)
Q Consensus       167 ~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~  246 (346)
                      ..++..+|++..++.- --+.+.+-...|-.+|-|.          |+++.|.+|.     ++-+.-.+++ |.|.|...
T Consensus        66 l~liraHPdLAgk~a~-a~elta~S~~EQasAGLd~----------Ls~~E~a~f~-----~LN~aY~~rF-gfPfI~aV  128 (176)
T COG3195          66 LALIRAHPDLAGKAAI-AGELTAESTSEQASAGLDR----------LSPEEFARFT-----ELNAAYVERF-GFPFIIAV  128 (176)
T ss_pred             HHHHHHCHHHHHHHHH-HHHHHHHHHHHHHHCCCCC----------CCHHHHHHHH-----HHHHHHHHHC-CCCEEEEE
T ss_conf             9998869336778888-7775325477777357443----------8999999999-----9999999853-99648765


Q ss_pred             CCCC
Q ss_conf             1100
Q gi|254780812|r  247 KGAG  250 (346)
Q Consensus       247 ~g~~  250 (346)
                      ||.+
T Consensus       129 kg~~  132 (176)
T COG3195         129 KGNT  132 (176)
T ss_pred             CCCC
T ss_conf             4888


No 317
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=30.19  E-value=41  Score=14.65  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=13.7

Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCCCE
Q ss_conf             79999998721287629872652133200104324433
Q gi|254780812|r   51 TPEYTVELTLQPIRRYNFDAAILFSDILVIADALGRNV   88 (346)
Q Consensus        51 ~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~~v   88 (346)
                      +|++..|++-.-+++.+.|.     |..+-+||||..+
T Consensus        30 ~p~~l~~i~~~ii~~~D~~i-----DkIv~iEa~Gipi   62 (184)
T PRK12560         30 RPAVLLEVAHKVIQIIDMDI-----DKIVTEEDKGAPL   62 (184)
T ss_pred             CHHHHHHHHHHHHHHCCCCC-----CEEEEHHHCCCHH
T ss_conf             98999999999998616687-----6897413356388


No 318
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=29.83  E-value=42  Score=14.61  Aligned_cols=35  Identities=23%  Similarity=0.459  Sum_probs=24.6

Q ss_pred             HHH-HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHH
Q ss_conf             432-378777876421024-53201111479999999
Q gi|254780812|r  118 NYL-LPIFQSISILRKKLP-NHITLIGFCGAPWTVAS  152 (346)
Q Consensus       118 ~~l-~~v~eAi~~~k~~l~-~~~pLIGF~GgP~Tlas  152 (346)
                      +++ ..+.+|+..+++..+ +++-+||+|-|=-++++
T Consensus       161 dYi~e~l~~aid~V~~itg~~dInliGyC~GGt~~~~  197 (445)
T COG3243         161 DYILEGLSEAIDTVKDITGQKDINLIGYCVGGTLLAA  197 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHH
T ss_conf             9999999999999998747651235546145699999


No 319
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=29.45  E-value=43  Score=14.56  Aligned_cols=73  Identities=10%  Similarity=0.081  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC--CCHHHHHCCCCCCE
Q ss_conf             9999977777549816784383110068356777612722689999863088623602431100--00134201478722
Q gi|254780812|r  187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG--YMLKNYRRLTDSNA  264 (346)
Q Consensus       187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~--~~l~~~~~~~g~d~  264 (346)
                      .+.++++...++||+.|.|--    --..+.|   .-|..-+.+..+++..+ +|+|. .+|..  .....+.+.+|+|.
T Consensus       139 ~~~~~~~~l~~~G~~~itvH~----Rt~~q~~---~g~a~w~~i~~~k~~~~-ipvi~-NGdi~~~~d~~~~l~~tg~dg  209 (309)
T pfam01207       139 NAVEIARRVEDAGAQALTVHG----RTRAQNY---EGPADWDAIKQVKQAVS-IPVIA-NGDITDAEDAQRCLSYTGADG  209 (309)
T ss_pred             HHHHHHHHHHHCCCCEEEEEC----CCHHHCC---CCCCCHHHHHHHHHHCC-CCEEE-ECCCCCHHHHHHHHHHHCCCE
T ss_conf             899999999846888799967----6324026---78654189999998589-82898-089488999999986109999


Q ss_pred             EECC
Q ss_conf             3046
Q gi|254780812|r  265 IGLD  268 (346)
Q Consensus       265 isiD  268 (346)
                      +=+.
T Consensus       210 vMig  213 (309)
T pfam01207       210 VMIG  213 (309)
T ss_pred             EEEC
T ss_conf             9984


No 320
>TIGR00863 P2X cation transporter protein; InterPro: IPR001429   P2X purinoceptors are cell membrane ion channels, gated by adenosine 5'-triphosphate (ATP) and other nucleotides; they have been found to be widely expressed on mammalian cells, and, by means of their functional properties, can be differentiated into three sub-groups. The first group is almost equally well activated by ATP and its analogue alphabetamethyleneATP, whereas, the second group is not activated by the latter compound. A third type of receptor (also called P2Z) is distinguished by the fact that repeated or prolonged agonist application leads to the opening of much larger pores, allowing large molecules to traverse the cell membrane. This increased permeability rapidly leads to cell death, and lysis.   Molecular cloning studies have identified seven P2X receptor subtypes, designated P2X1-P2X7. These receptors are proteins that share 35-48% amino acid identity, and possess two putative transmembrane (TM) domains, separated by a long (~270 residues) intervening sequence, which is thought to form an extracellular loop. Around 1/4 of the residues within the loop are invariant between the cloned subtypes, including 10 characteristic cysteines.   Studies of the functional properties of heterologously expressed P2X receptors, together with the examination of their distribution in native tissues, suggests they likely occur as both homo- and heteromultimers in vivo , .   This entry represents all P2X purinoreceptor subtypes.; GO: 0004872 receptor activity, 0005216 ion channel activity, 0005524 ATP binding, 0006811 ion transport, 0016020 membrane.
Probab=29.44  E-value=23  Score=16.50  Aligned_cols=43  Identities=14%  Similarity=0.187  Sum_probs=32.9

Q ss_pred             CCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEEC
Q ss_conf             4311000013420147872230467799899997-079846968
Q gi|254780812|r  245 FAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQG  287 (346)
Q Consensus       245 f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqG  287 (346)
                      .-+.+++...+|+..-|+=+|.|+|.+||+++.. -.|+..+++
T Consensus       240 ~V~~AG~dF~~lA~~GGv~GI~I~W~CDLD~~~s~C~P~YsF~r  283 (377)
T TIGR00863       240 IVEKAGQDFQDLALKGGVVGITINWDCDLDKAASECNPKYSFRR  283 (377)
T ss_pred             HHHHHCHHHHHHHHCCCEEEEEEEEEECCCCHHHCCCCEEEEEC
T ss_conf             98760631798987098888997201276841205875033100


No 321
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=29.42  E-value=33  Score=15.37  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=27.5

Q ss_pred             CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCC
Q ss_conf             831100683567776127226899998630886236024311000013420147
Q gi|254780812|r  207 DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLT  260 (346)
Q Consensus       207 Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~  260 (346)
                      ||-|+ |. ..-+.=++||++++-+++     ++|++|-+    |-+.++..++
T Consensus       157 EPLaa-LD-~~rk~EilPYLerL~~e~-----~iP~lyVS----Hsl~Ev~rLA  199 (361)
T TIGR02142       157 EPLAA-LD-EPRKKEILPYLERLHAEL-----KIPILYVS----HSLDEVARLA  199 (361)
T ss_pred             CCHHH-CC-HHHHHHHCCHHHHHHHHH-----CCCEEEEE----CCHHHHHHHH
T ss_conf             66234-06-444664161676789872-----79889990----4979998760


No 322
>PRK03059 PII uridylyl-transferase; Provisional
Probab=29.34  E-value=31  Score=15.57  Aligned_cols=58  Identities=29%  Similarity=0.539  Sum_probs=30.4

Q ss_pred             HHHHHHHCCCCCCCCCCH-HHHHC---CCCCHHHHHHHHHCCCHHHHHC--CHHHHHHHHHHHHHHC
Q ss_conf             799999669989999761-46231---2345799999761553899842--7999999872128762
Q gi|254780812|r    6 QKILEVLQGNVINPPPIW-LMRQA---GRYLPEYRQIRKKFKNFLDMCY--TPEYTVELTLQPIRRY   66 (346)
Q Consensus         6 ~~~l~al~g~~~~r~PVW-~MrQA---Grylpey~~~r~~~~~f~~~~~--~pela~evtl~p~~r~   66 (346)
                      +.|+.-++... ...++| .|.+.   |||+||+..++..++  +|+.|  |++-=+=-++.-+++|
T Consensus       393 ~~F~~iL~~~~-~~~~~l~~M~~~GvL~~~iPef~~I~g~mQ--fD~yH~YTVDeHtl~~v~~l~~~  456 (857)
T PRK03059        393 ALFMQILQQPR-GITHALRLMNQTSVLGRYLPNFRRIVGQMQ--HDLFHVYTVDQHILMVLRNLRRF  456 (857)
T ss_pred             HHHHHHHCCCC-CHHHHHHHHHHHCCHHHHCCCHHHHHCCCC--CCCHHHCCHHHHHHHHHHHHHHH
T ss_conf             99999973898-589999999874862753665786716634--55024160637899999999997


No 323
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=29.30  E-value=18  Score=17.18  Aligned_cols=58  Identities=22%  Similarity=0.196  Sum_probs=26.4

Q ss_pred             EECCCCCCHHHHHHHCCC--------EEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCC-------C-EEEECCCCC
Q ss_conf             304677998999970798--------4696888846770998899999999999732599-------2-896089763
Q gi|254780812|r  265 IGLDWSVPLSFALELQKE--------GPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGP-------F-IFNLGHGIT  326 (346)
Q Consensus       265 isiD~~~dl~~a~~~~~~--------~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~-------~-I~nLGhGi~  326 (346)
                      +-++...|+-++.++..+        .++--||+-  =..++|.+.+-++.+.+ . +-|       + ||+-+||..
T Consensus       504 lp~~~~~d~fe~l~~q~~lq~~yTGGtVlHi~LgE--~~~~~ea~~~lvk~~~~-~-~lpY~titp~fsiC~~chgy~  577 (625)
T PRK08271        504 VPLDANTDALDRFKLHGKLDKKVSGGSILHLNLDE--SLKSEEGYLKLVNIAAK-T-GVNYFAINVKITICNEGHAID  577 (625)
T ss_pred             CCCCCCCCHHHHHHHHCCCCCEECCEEEEEEECCC--CCCCHHHHHHHHHHHHH-C-CCCEEEECCCEEECCCCCCCC
T ss_conf             78889989999997524642224141899976688--88999999999999984-7-997699576713788999885


No 324
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may 
Probab=28.93  E-value=43  Score=14.50  Aligned_cols=118  Identities=20%  Similarity=0.171  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCC
Q ss_conf             99999999999777775498167843831100683567776127226899998630886236024311000013420147
Q gi|254780812|r  181 LDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLT  260 (346)
Q Consensus       181 l~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~  260 (346)
                      +..|-+.+.+|+...=-.++++--+|-.|-|..+.+.-..|.+-...-.+..+-..   .++|.  |...+   .+.--+
T Consensus       220 i~aL~~l~~eyl~~~g~~D~~v~tV~hqwMG~FP~d~~~A~~li~~~a~~A~~~gA---~kvIv--KT~~E---A~gIPt  291 (428)
T cd00245         220 LRALRELAKEYLPKYGYKDVDIHTVFHQWMGGFPRDESGAFGLIGYAATIAALSGA---TKVIV--KTPDE---AHGIPT  291 (428)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC---CEEEE--CCHHH---HCCCCC
T ss_conf             99999999999986698871699998740477998731357789889999987179---77997--28899---758998


Q ss_pred             -CCCEEECCCCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             -8722304677998999970798469688884677099889999999999973
Q gi|254780812|r  261 -DSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVL  312 (346)
Q Consensus       261 -g~d~isiD~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~  312 (346)
                       ..++-      -++.++...+-.--|-..+...+-...+.+++||+.++++.
T Consensus       292 ~eaN~~------~l~~t~~~~~~~~~q~~~~~~~~~~E~~~i~~Ev~~i~d~V  338 (428)
T cd00245         292 IEANVA------GLKATATVLNMLRGQKFPPSEAIEQEEEIIKAEVKAILDKV  338 (428)
T ss_pred             HHHHHH------HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             899999------99999999998734556786310358999999999999999


No 325
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=28.82  E-value=44  Score=14.49  Aligned_cols=91  Identities=14%  Similarity=0.201  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHH
Q ss_conf             22689999863088623602431100001342014787223046779989999707984696888846770998899999
Q gi|254780812|r  225 SVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDG  304 (346)
Q Consensus       225 ~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~  304 (346)
                      .++.+++.+|+.  ++.+..|.--....+ +.+...|+|++-+--.   ..|...          +    -...+...+.
T Consensus       111 ~L~~~i~~lk~~--~IrvSLFIDPd~~qi-~~a~~~Gad~VElhTG---~Ya~a~----------~----~~~~~~el~~  170 (234)
T cd00003         111 KLKPIIERLKDA--GIRVSLFIDPDPEQI-EAAKEVGADRVELHTG---PYANAY----------D----KAEREAELER  170 (234)
T ss_pred             HHHHHHHHHHHC--CCEEEEEECCCHHHH-HHHHHHCCCEEEEECH---HHHHHC----------C----CHHHHHHHHH
T ss_conf             999999999865--982799727987899-9999849399998247---878634----------8----1039999999


Q ss_pred             HHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             99999973259928960897633668899999999
Q gi|254780812|r  305 VNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVK  339 (346)
Q Consensus       305 ~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~  339 (346)
                      ..++.+.+..-|.-+|.|||+.    .+|+..|.+
T Consensus       171 i~~aa~~A~~lGL~VnAGHgLn----~~Nl~~i~~  201 (234)
T cd00003         171 IAKAAKLARELGLGVNAGHGLN----YENVKPIAK  201 (234)
T ss_pred             HHHHHHHHHHCCCEEECCCCCC----HHHHHHHHC
T ss_conf             9999999998598785478988----767999855


No 326
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179   This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=28.75  E-value=44  Score=14.48  Aligned_cols=116  Identities=16%  Similarity=0.271  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHCCCCCCCHHHHHHHHC-----------------C-CHHHHHHH
Q ss_conf             7877787642102453201111479999999---9612467765246775301-----------------3-72228999
Q gi|254780812|r  122 PIFQSISILRKKLPNHITLIGFCGAPWTVAS---YMISGGFIKDHGQNRVFAY-----------------Q-NSRAFNWL  180 (346)
Q Consensus       122 ~v~eAi~~~k~~l~~~~pLIGF~GgP~Tlas---YmieG~~sk~~~~~~~~~~-----------------~-~p~~~~~l  180 (346)
                      .+.++=+.+|++-| +.||++=+|+|=+..-   |-+     +.-.++-.++.                 + |+...+.+
T Consensus       103 ~~~~tF~~vR~~aP-~~~l~AN~GA~q~~~~~~~~g~-----~~~~~aid~i~AdAL~iHlN~~QE~vqpEGDr~F~~G~  176 (349)
T TIGR02151       103 EVAETFEVVREEAP-NGPLIANIGAPQLVEGGKKYGV-----EEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFSKGW  176 (349)
T ss_pred             HHHHHHHHHHHHCC-CCCEEECCCHHHHHCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             24666999997679-8337871787887406534488-----99999998751013355432330255799970156538


Q ss_pred             HHHHHHHHHH-----------------HHHHHHHCCCCEEEECC----CCHHH----------CCH----HHHHHHHCCC
Q ss_conf             9999999999-----------------97777754981678438----31100----------683----5677761272
Q gi|254780812|r  181 LDFLSDVSAE-----------------YLIAQIHAGVDVIQIFD----THAGC----------LGE----HEFENYAARS  225 (346)
Q Consensus       181 l~~lt~~~~~-----------------yl~~Qi~aGad~iqIFD----s~ag~----------Ls~----~~f~~f~~p~  225 (346)
                      ++.|.++|-.                 -++...++|+++|-|-=    |||.+          ...    +.|.+|-.|.
T Consensus       177 l~~i~~~~~~~~vPVIvKEvG~G~S~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~Rr~~~~~~~~~r~a~~f~~WGipT  256 (349)
T TIGR02151       177 LEKIAEICSAVSVPVIVKEVGFGISKEVAKLLADAGVKAIDVSGAGGTSWAAVENYRRAKESNQKYERLASAFSDWGIPT  256 (349)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
T ss_conf             99999999652898799821579988999999878900887078767559999988751575235788877774148866


Q ss_pred             HHHHHHHHHHHCCCCEEE
Q ss_conf             268999986308862360
Q gi|254780812|r  226 VGRIISAVRRKYPNAKFI  243 (346)
Q Consensus       226 ~kkI~~~ik~~~~~vpiI  243 (346)
                      ..-|++.=....++.|+|
T Consensus       257 ~~sL~~~~~~~~~~~~~i  274 (349)
T TIGR02151       257 AASLLEVRSIDAPDAPLI  274 (349)
T ss_pred             HHHHHHHHHHHCCCCCEE
T ss_conf             899999864212477368


No 327
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=28.75  E-value=36  Score=15.11  Aligned_cols=28  Identities=18%  Similarity=0.364  Sum_probs=23.5

Q ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             8960897633668899999999997306
Q gi|254780812|r  318 IFNLGHGITPQVDPKNVLDLVKTVRSEK  345 (346)
Q Consensus       318 I~nLGhGi~p~tp~eNv~~~v~~vr~~~  345 (346)
                      +||.|.|..--+++++....++..+++.
T Consensus       260 tFNmGiGmvliv~~~~~~~v~~~l~~~g  287 (297)
T cd02196         260 TFNMGIGMVLIVSEEDADEVLEILEKLG  287 (297)
T ss_pred             HCCCCCEEEEEECHHHHHHHHHHHHHCC
T ss_conf             5478722999983899999999999769


No 328
>TIGR00583 mre11 DNA repair protein (mre11); InterPro: IPR003701   Mre11 and Rad50 are two proteins required for DNA repair and meiosis-specific double-strand break formation in Saccharomyces cerevisiae. Mre11 by itself has 3' to 5' exonuclease activity that is increased when Mre11 is in a complex with Rad50 .    These eukaryotic proteins contain one metallo-phosphoesterase domain followed by an Mre11 DNA-binding domain. S. cerevisiae Mre11 is required for DNA repair and meiosis-specific double-strand break (DSB) formation  and has both 3' to 5' exonuclease activity (which increases when in complex with Rad50) and endonuclease activity. The N-terminal phosphoesterase domain is required for DSB repair, and the carboxyl-terminal dsDNA-binding domain is essential during meiosis for chromatin modification and DSB formation . Schizosaccharomyces pombe rad32 is required for repair of double strand breaks and recombination .  For additional information please see . ; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=28.63  E-value=15  Score=17.82  Aligned_cols=41  Identities=27%  Similarity=0.733  Sum_probs=30.9

Q ss_pred             CHHHHHHHHHCCCCCC--CCCC----HH--------------HHHCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             6057999996699899--9976----14--------------623123457999997615538998
Q gi|254780812|r    3 ERKQKILEVLQGNVIN--PPPI----WL--------------MRQAGRYLPEYRQIRKKFKNFLDM   48 (346)
Q Consensus         3 ~~~~~~l~al~g~~~~--r~PV----W~--------------MrQAGrylpey~~~r~~~~~f~~~   48 (346)
                      -+.+||-||.|-.+|.  ||=.    ||              =|..|.||||-     =-++|+||
T Consensus       175 vRDeRL~r~Fk~n~v~F~rP~~~~~dWFNLl~lHQNhPrr~~Ht~TG~fLPE~-----~lpdF~Dl  235 (424)
T TIGR00583       175 VRDERLFRTFKDNKVKFLRPNLRKEDWFNLLVLHQNHPRRAAHTSTGSFLPES-----FLPDFLDL  235 (424)
T ss_pred             HHHHHCEEEEECCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHH-----HHHHHHHH
T ss_conf             21101020121273588417777687410000215886645577742426134-----20345635


No 329
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI; InterPro: IPR014227   This entry contains the sporulation protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E . Second, mutation leads to a sporulation defect. Third, it is found in exactly those genomes whose bacteria are capable of sporulation, except that it is absent in Clostridium acetobutylicum ATCC 824. YtvI has extensive hydrophobic regions and is likely to be an integral membrane protein..
Probab=28.54  E-value=44  Score=14.46  Aligned_cols=42  Identities=19%  Similarity=0.219  Sum_probs=27.1

Q ss_pred             HHHHHCCCCCCCHHHHHHHHCCC-HHHHHH----HHHHHHHHHHHHHHHHH
Q ss_conf             99961246776524677530137-222899----99999999999977777
Q gi|254780812|r  151 ASYMISGGFIKDHGQNRVFAYQN-SRAFNW----LLDFLSDVSAEYLIAQI  196 (346)
Q Consensus       151 asYmieG~~sk~~~~~~~~~~~~-p~~~~~----ll~~lt~~~~~yl~~Qi  196 (346)
                      |+|++    |||..+.++++++- |+.+++    ....+......|++||.
T Consensus       175 A~Ffi----s~Dl~~l~~~~~~~lP~~~~~~~~~i~~~~~k~~~Gf~KAQ~  221 (350)
T TIGR02872       175 ATFFI----SKDLPRLKSKLFSILPERTSQKLKNIFSELKKALFGFLKAQL  221 (350)
T ss_pred             HHHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998----733999999998766578999999999999999999999999


No 330
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.51  E-value=44  Score=14.46  Aligned_cols=15  Identities=33%  Similarity=0.426  Sum_probs=11.0

Q ss_pred             HHHHHHCCCCEEEEC
Q ss_conf             777775498167843
Q gi|254780812|r  192 LIAQIHAGVDVIQIF  206 (346)
Q Consensus       192 l~~Qi~aGad~iqIF  206 (346)
                      ++.-.+||.|.|+|-
T Consensus       150 A~rA~~AGfDgVEiH  164 (353)
T cd04735         150 TRRAIEAGFDGVEIH  164 (353)
T ss_pred             HHHHHHCCCCEEEEC
T ss_conf             999998399989975


No 331
>TIGR00884 guaA_Cterm GMP synthase, C-terminal domain; InterPro: IPR001674   The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations . GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains .; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process.
Probab=28.44  E-value=19  Score=17.02  Aligned_cols=187  Identities=17%  Similarity=0.201  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHHHHHCCCCCCCHHHH----HHHHCC-CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78777876421024532011114799-9999996124677652467----753013-72228999999999999997777
Q gi|254780812|r  122 PIFQSISILRKKLPNHITLIGFCGAP-WTVASYMISGGFIKDHGQN----RVFAYQ-NSRAFNWLLDFLSDVSAEYLIAQ  195 (346)
Q Consensus       122 ~v~eAi~~~k~~l~~~~pLIGF~GgP-~TlasYmieG~~sk~~~~~----~~~~~~-~p~~~~~ll~~lt~~~~~yl~~Q  195 (346)
                      ++-++|+.+|++.+|.+.+++.+||= =|+|+.|+. +...|-+..    --+|.+ ++|.+.+.+.--.          
T Consensus         2 fi~~~i~~ir~~VGD~~vi~ALSGGVDSsV~A~L~h-rAIGD~L~~vFVD~GLlR~gE~E~V~~~F~~~l----------   70 (319)
T TIGR00884         2 FIEEAIEEIREQVGDAKVIIALSGGVDSSVAAVLLH-RAIGDRLTCVFVDHGLLRKGEAERVVKTFSDKL----------   70 (319)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHH-HHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHH----------
T ss_conf             368899999852288468998108815899999998-642276048982278887663789999987530----------


Q ss_pred             HHCCCCEEEE------CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCC-CEEECCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf             7549816784------3831100683567776127226899998630886-23602431100001342014787223046
Q gi|254780812|r  196 IHAGVDVIQI------FDTHAGCLGEHEFENYAARSVGRIISAVRRKYPN-AKFISFAKGAGYMLKNYRRLTDSNAIGLD  268 (346)
Q Consensus       196 i~aGad~iqI------FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~-vpiI~f~~g~~~~l~~~~~~~g~d~isiD  268 (346)
                         |.+.+.|      +..-.|.=.||.=|+-+-.-.-++++..-++..+ -.+=|-.=  +.+++|..+.....+-+.-
T Consensus        71 ---g~nl~~VDA~e~FL~~L~GV~DPE~KRKIIG~~FI~VFE~~A~~~~~~~~a~yL~Q--GTlYPDvIES~~~kG~~~a  145 (319)
T TIGR00884        71 ---GLNLVVVDAKERFLSALKGVTDPEEKRKIIGRVFIEVFEREAEKIGDKKKAEYLVQ--GTLYPDVIESASSKGTSGA  145 (319)
T ss_pred             ---CCCCEEECCCHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE--CCCCCCEEEECCCCCCCCC
T ss_conf             ---89827876107988752889870341311225667778889985079977999973--4344746460230477647


Q ss_pred             CCCCHHHHHHHCCCEEEECCCCHHHH----CCC-HHHHHHHHHHHHHHHC-------CCCCEEEECCC----CCCCCCHH
Q ss_conf             77998999970798469688884677----099-8899999999999732-------59928960897----63366889
Q gi|254780812|r  269 WSVPLSFALELQKEGPVQGNLDPMRL----VVG-NQVMIDGVNAILDVLG-------SGPFIFNLGHG----ITPQVDPK  332 (346)
Q Consensus       269 ~~~dl~~a~~~~~~~~lqGNldP~~L----~~~-~e~i~~~~~~~l~~~~-------~~~~I~nLGhG----i~p~tp~e  332 (346)
                           ...|-+- +   .|.| |..|    ..+ .+=.++||+++=+..|       ++||   .|=|    |.-+...|
T Consensus       146 -----~~IKsHH-N---VGGL-P~~m~l~LvEPLR~LfKDEVR~lG~~LGlP~ei~~R~PF---PGPGLAvRv~GEVt~e  212 (319)
T TIGR00884       146 -----ATIKSHH-N---VGGL-PEDMKLKLVEPLRELFKDEVRKLGKELGLPEEIVWRHPF---PGPGLAVRVLGEVTKE  212 (319)
T ss_pred             -----CCCCCCC-C---CCCC-CCCCEEEEECCCHHCCHHHHHHHHHHCCCCHHHHCCCCC---CCCCCEEEEECCCCHH
T ss_conf             -----6456310-6---6888-542602587540230217899999871886799647836---8696227886166779


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780812|r  333 NVLDL  337 (346)
Q Consensus       333 Nv~~~  337 (346)
                      .++-+
T Consensus       213 ~l~i~  217 (319)
T TIGR00884       213 KLEIL  217 (319)
T ss_pred             HHHHH
T ss_conf             99997


No 332
>PRK00654 glgA glycogen synthase; Provisional
Probab=28.41  E-value=6.7  Score=20.21  Aligned_cols=11  Identities=9%  Similarity=0.265  Sum_probs=8.7

Q ss_pred             CCCCHHHHHHH
Q ss_conf             45320111147
Q gi|254780812|r  135 PNHITLIGFCG  145 (346)
Q Consensus       135 ~~~~pLIGF~G  145 (346)
                      .+++||+||+|
T Consensus       290 ~~~~pl~~~vg  300 (476)
T PRK00654        290 DDDAPLFAMVS  300 (476)
T ss_pred             CCCCCEEEEEE
T ss_conf             89974899985


No 333
>pfam01738 DLH Dienelactone hydrolase family.
Probab=28.16  E-value=45  Score=14.41  Aligned_cols=29  Identities=24%  Similarity=0.621  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHC---CCCCCHHHHHH-HHHHHH
Q ss_conf             787778764210---24532011114-799999
Q gi|254780812|r  122 PIFQSISILRKK---LPNHITLIGFC-GAPWTV  150 (346)
Q Consensus       122 ~v~eAi~~~k~~---l~~~~pLIGF~-GgP~Tl  150 (346)
                      -+..++..+++.   -++++-++||| ||-+++
T Consensus        81 d~~aa~~~l~~~~~~~~~rig~~Gfc~GG~~a~  113 (216)
T pfam01738        81 DLLAAINYLRGQPYVDTKKVGVVGFCLGGRLAF  113 (216)
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHH
T ss_conf             999999999837777888289998664899999


No 334
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=28.04  E-value=45  Score=14.40  Aligned_cols=30  Identities=17%  Similarity=0.275  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHH
Q ss_conf             37877787642102453201--11147999999
Q gi|254780812|r  121 LPIFQSISILRKKLPNHITL--IGFCGAPWTVA  151 (346)
Q Consensus       121 ~~v~eAi~~~k~~l~~~~pL--IGF~GgP~Tla  151 (346)
                      ..+.++|-..|..|+.++|+  .| ||-|.+.+
T Consensus       201 ~~l~~~i~~ak~~lp~~~PvHlFG-aGHPm~f~  232 (486)
T PRK13533        201 DELVDVVLAAKSGLSPGAPVHLFG-AGHPMMFA  232 (486)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEC-CCCHHHHH
T ss_conf             999999999972299999715415-88477899


No 335
>COG3403 Uncharacterized conserved protein [Function unknown]
Probab=27.98  E-value=32  Score=15.47  Aligned_cols=47  Identities=21%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHCC--CCEEEECCCCHHHCCHHHHHHHHCCCHHHH
Q ss_conf             99999999977777549--816784383110068356777612722689
Q gi|254780812|r  183 FLSDVSAEYLIAQIHAG--VDVIQIFDTHAGCLGEHEFENYAARSVGRI  229 (346)
Q Consensus       183 ~lt~~~~~yl~~Qi~aG--ad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI  229 (346)
                      -+.+.+.+|.+.|=+.|  |.-|.+|||=-++++..+|++-....+.-+
T Consensus        70 gla~~Laey~t~~~D~g~~aSfv~~fdtPEdl~~e~dyee~lwq~l~~L  118 (257)
T COG3403          70 GLAPLLAEYGTISRDTGKYASFVVTFDTPEDLFTEPDYEERLWQQLRAL  118 (257)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5479999973412456761579997348166410155999999999988


No 336
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=27.76  E-value=45  Score=14.37  Aligned_cols=123  Identities=10%  Similarity=0.103  Sum_probs=65.3

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCC
Q ss_conf             530137222899999999999999777775498167843-8311006835677761272268999986308862360243
Q gi|254780812|r  168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFA  246 (346)
Q Consensus       168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~  246 (346)
                      ...|.+|+.+.++.+              +.|+|++.+. -+.-|.-..+      -.-.-.+++.|++.. ++|+..|.
T Consensus       149 ~~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~yk~~------p~L~~d~L~~I~~~~-~iPLVLHG  207 (281)
T PRK06806        149 EMLLTSTEEAKRFAE--------------ETDVDALAVAIGNAHGMYNGD------PNLRLDRLQEINDNV-HIPLVLHG  207 (281)
T ss_pred             CCCCCCHHHHHHHHH--------------HHCCCEEEEECCCCCCCCCCC------CCCCHHHHHHHHHHC-CCCEEEEC
T ss_conf             756689899999999--------------859989987437554565899------866999999999728-99989649


Q ss_pred             CCCCCC---HHHHHCCCCCCEEECCCCCCHHHH---HHHCCCEEEECCCCHHHHCC-CHHHHHHHHHHHHHHHCCCC
Q ss_conf             110000---134201478722304677998999---97079846968888467709-98899999999999732599
Q gi|254780812|r  247 KGAGYM---LKNYRRLTDSNAIGLDWSVPLSFA---LELQKEGPVQGNLDPMRLVV-GNQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       247 ~g~~~~---l~~~~~~~g~d~isiD~~~dl~~a---~~~~~~~~lqGNldP~~L~~-~~e~i~~~~~~~l~~~~~~~  316 (346)
                       |++..   +..... .|+.=+.++...-....   ++...+   .-..||..++. ..+.+++.+++.++.++..|
T Consensus       208 -gSG~~~e~i~~ai~-~Gi~KiNi~T~l~~a~~~~~r~~~~~---~~~~d~~~~~~~~~~a~~e~v~~~i~~fGS~g  279 (281)
T PRK06806        208 -GSGISPEDFKQCIQ-HGIRKINVATATFNNVITAVNNLVLN---TPYSDYFTYHQDVIKAAYENVKKHMQIFGSEN  279 (281)
T ss_pred             -CCCCCHHHHHHHHH-CCCEEEEECHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             -99999999999998-69838986757899999999999860---89888689879999999999999999978898


No 337
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=27.72  E-value=45  Score=14.36  Aligned_cols=58  Identities=17%  Similarity=0.165  Sum_probs=37.9

Q ss_pred             CHHHHHHH---CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCC-CCCEEEECCCCCCCCC-HHHHHHHHHHHHHC
Q ss_conf             98999970---79846968888467709988999999999997325-9928960897633668-89999999999730
Q gi|254780812|r  272 PLSFALEL---QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGS-GPFIFNLGHGITPQVD-PKNVLDLVKTVRSE  344 (346)
Q Consensus       272 dl~~a~~~---~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~-~~~I~nLGhGi~p~tp-~eNv~~~v~~vr~~  344 (346)
                      +++..+++   +..++++|.++|..+               ..+.+ +..|+=-|-+|...-+ .+-.+.|.+.++.|
T Consensus       152 ~~~~ik~l~~~~~~vaVaGGI~~~~~---------------~~~~~~~~~ivIVGraIt~a~dP~~aA~~i~~~I~~~  214 (216)
T PRK13306        152 DLNKVKKLSDMGFKVSVTGGIVPEDL---------------KLFKGIPIKTFIAGRAIRGAKDPAEAARAFKDEIAKY  214 (216)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCHHHH---------------HHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             89999997636982998599898999---------------9986279989998852358999999999999999986


No 338
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132   This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown..
Probab=27.57  E-value=43  Score=14.54  Aligned_cols=139  Identities=14%  Similarity=0.160  Sum_probs=80.5

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             53013722289999999999999977777549816784383110068356777612722689999863088623602431
Q gi|254780812|r  168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK  247 (346)
Q Consensus       168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~  247 (346)
                      .|..++||.+.+|.++.-+-        -+=|-..-+-+|  ..-|+++.-.+=.. ..+++++.+-.+  +..++=+|.
T Consensus        43 ~Wae~hPelvk~lveI~~~G--------HEIGsHgY~h~~--~~~l~~E~ikkd~~-~a~~~i~~~~g~--~p~LlRpP~  109 (198)
T TIGR02764        43 SWAERHPELVKELVEIVKDG--------HEIGSHGYRHKN--YTTLEDEKIKKDLL-RAQEIIEKLTGK--KPTLLRPPN  109 (198)
T ss_pred             HHHHCCHHHHHHHHHHHHCC--------CCCCCCCCCCCC--CCCCCHHHHHHHHH-HHHHHHHHHCCC--CEEEEECCC
T ss_conf             57612778999999998448--------430335421242--12587648999999-988888651055--501656889


Q ss_pred             CC-CCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCE---EEECCCCH---HHHC-CC--HHHHHHHHHHHHHHHCCCCC
Q ss_conf             10-0001342014787223046779989999707984---69688884---6770-99--88999999999997325992
Q gi|254780812|r  248 GA-GYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEG---PVQGNLDP---MRLV-VG--NQVMIDGVNAILDVLGSGPF  317 (346)
Q Consensus       248 g~-~~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~---~lqGNldP---~~L~-~~--~e~i~~~~~~~l~~~~~~~~  317 (346)
                      |. +...-..++..|+.|+.=+|.+|..+.++-|-+.   -+.=|+.|   .+|+ +|  ..+=.++..++|.+.+..||
T Consensus       110 G~fn~~~~~~ae~~GY~~V~WsWHvdS~DWkNPG~e~iv~~V~~~~~~GdIiL~HDASd~~KqT~~ALp~Ii~~LK~~GY  189 (198)
T TIGR02764       110 GAFNKAVLKLAESLGYTVVHWSWHVDSLDWKNPGVESIVDRVVKNTKPGDIILLHDASDSAKQTVKALPEIIKKLKEKGY  189 (198)
T ss_pred             CCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             86046899999973991898624558835457861000111331279985698763487974417789999899875495


Q ss_pred             EE
Q ss_conf             89
Q gi|254780812|r  318 IF  319 (346)
Q Consensus       318 I~  319 (346)
                      =|
T Consensus       190 ~f  191 (198)
T TIGR02764       190 EF  191 (198)
T ss_pred             EE
T ss_conf             34


No 339
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit; InterPro: IPR005741   DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA .   Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils .   This entry represents subunit A (parC) of topoisomerase IV from Gram positive bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II.   More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=27.49  E-value=18  Score=17.10  Aligned_cols=29  Identities=14%  Similarity=0.170  Sum_probs=14.7

Q ss_pred             CHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHH
Q ss_conf             38998427999999872128762987265213320010432
Q gi|254780812|r   44 NFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADAL   84 (346)
Q Consensus        44 ~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~eal   84 (346)
                      -++|+|.-||            |+-=|.|-|.|=+--+.--
T Consensus       200 ~L~e~~kgPD------------FPTGG~i~~~~~~~~aY~t  228 (745)
T TIGR01061       200 KLMEIVKGPD------------FPTGGIIQGEDGIKKAYET  228 (745)
T ss_pred             HHHHHCCCCC------------CCCCCEEECHHHHHHHHHC
T ss_conf             8985448411------------5887246141547889854


No 340
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme; InterPro: IPR006316   These sequences represent a family of pyridoxal-phosphate dependent enzymes that are closely related to the beta subunit of tryptophan synthase. ; GO: 0004834 tryptophan synthase activity, 0030170 pyridoxal phosphate binding, 0000162 tryptophan biosynthetic process.
Probab=26.94  E-value=27  Score=15.90  Aligned_cols=26  Identities=31%  Similarity=0.464  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHCCCCCEEEE-CCCCCC
Q ss_conf             99999999973259928960-897633
Q gi|254780812|r  302 IDGVNAILDVLGSGPFIFNL-GHGITP  327 (346)
Q Consensus       302 ~~~~~~~l~~~~~~~~I~nL-GhGi~p  327 (346)
                      .++++++-+.+..+-=+||| |||++-
T Consensus       389 ~~~A~K~~~~g~ekvi~f~lSGHGLLD  415 (426)
T TIGR01415       389 IDEARKAREEGKEKVILFNLSGHGLLD  415 (426)
T ss_pred             HHHHHHCCCCCCEEEEEEECCCCHHHH
T ss_conf             999872766786038998627721321


No 341
>cd01473 vWA_CTRP CTRP for  CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60  amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=26.88  E-value=47  Score=14.26  Aligned_cols=17  Identities=12%  Similarity=0.128  Sum_probs=5.3

Q ss_pred             HHHHHHHHCCCHHHHHH
Q ss_conf             35677761272268999
Q gi|254780812|r  215 EHEFENYAARSVGRIIS  231 (346)
Q Consensus       215 ~~~f~~f~~p~~kkI~~  231 (346)
                      .+.|++.++++++++++
T Consensus        15 ~~nf~~~v~~F~~~lv~   31 (192)
T cd01473          15 YSNWRKDVIPFTEKIIN   31 (192)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             67769999999999998


No 342
>pfam00708 Acylphosphatase Acylphosphatase.
Probab=26.82  E-value=47  Score=14.25  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=17.2

Q ss_pred             HHHHHHHHCCCCCEEEECCC---CCCCCCHHHHHHHHHHHHH
Q ss_conf             99999973259928960897---6336688999999999973
Q gi|254780812|r  305 VNAILDVLGSGPFIFNLGHG---ITPQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       305 ~~~~l~~~~~~~~I~nLGhG---i~p~tp~eNv~~~v~~vr~  343 (346)
                      +.+.-...+=.||+.|+.-|   +.-.-+.+++..|++.+++
T Consensus        22 ~~~~A~~lgl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~~   63 (90)
T pfam00708        22 VYRLARELGLKGYVRNLPDGTVEIVAQGPEEDVEKFIEWLKK   63 (90)
T ss_pred             HHHHHHHCCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHHH
T ss_conf             999999859879999999990999999399999999999976


No 343
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.78  E-value=47  Score=14.25  Aligned_cols=59  Identities=15%  Similarity=0.129  Sum_probs=27.2

Q ss_pred             ECCCCHHHHCCCH-----HHHHHHHHHHHHHHCCCC-CEEEECCCCCCCCCHH----HHHHHHHHHHHCC
Q ss_conf             6888846770998-----899999999999732599-2896089763366889----9999999997306
Q gi|254780812|r  286 QGNLDPMRLVVGN-----QVMIDGVNAILDVLGSGP-FIFNLGHGITPQVDPK----NVLDLVKTVRSEK  345 (346)
Q Consensus       286 qGNldP~~L~~~~-----e~i~~~~~~~l~~~~~~~-~I~nLGhGi~p~tp~e----Nv~~~v~~vr~~~  345 (346)
                      ++|+|-.+++.+.     .-...+.++.+++. +-| -+|.-.+.=+-.-+.+    .|++|+|....-|
T Consensus       359 ~~~vDG~v~H~NRSCk~~S~~~~e~R~~~ek~-GiP~~~fdgD~~DpR~FSeaQ~~TRveaflE~m~~rk  427 (430)
T TIGR03191       359 DWNVDGCMLHLNRGCEGLSIGIMENRLAIAKA-GIPIMTFEGNMGDEREFDEVRTQARVDAFMEQLGLRR  427 (430)
T ss_pred             HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHC-CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             71998799947889864321058999999875-9987997478788254789999999999999998753


No 344
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=26.67  E-value=47  Score=14.24  Aligned_cols=137  Identities=12%  Similarity=0.129  Sum_probs=76.4

Q ss_pred             HHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEE--CCCCCCCC----CHH------HHHCCC
Q ss_conf             777754981678438311006835677761272268999986308862360--24311000----013------420147
Q gi|254780812|r  193 IAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFI--SFAKGAGY----MLK------NYRRLT  260 (346)
Q Consensus       193 ~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI--~f~~g~~~----~l~------~~~~~~  260 (346)
                      ..-+..|||+|.+-=-|++--.+++++     -+.++.++.++.  +.|++  .|++|...    ..+      .+....
T Consensus       100 eeAvrlGAdaV~~~v~~Gs~~E~~~l~-----~l~~l~~ea~~~--GlPll~~~yprG~~~~~~~d~~~ia~aaRia~EL  172 (266)
T PRK07226        100 EDAIKLGADAVSVHVNVGSETEAEMLE-----DLGRIARECEEW--GMPLLAMMYPRGPKIKNEYDPEVVAHAARVGAEL  172 (266)
T ss_pred             HHHHHCCCCEEEEEEECCCCCHHHHHH-----HHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999855877899985479983799999-----999999999985--9956999734688777787599999999999996


Q ss_pred             CCCEEECCCCCCHHHHHHHC---C-CEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCCHHHHH
Q ss_conf             87223046779989999707---9-8469688884677099889999999999973259928960897633-66889999
Q gi|254780812|r  261 DSNAIGLDWSVPLSFALELQ---K-EGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITP-QVDPKNVL  335 (346)
Q Consensus       261 g~d~isiD~~~dl~~a~~~~---~-~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p-~tp~eNv~  335 (346)
                      |+|++-++|.-|.+..+++-   + .+.+.|.=.    ..+.+++.+.+++.++.+.. |-+  .|--|.. +-|..-++
T Consensus       173 GADiVKv~y~gd~e~f~~vv~~~~vPVliaGG~k----~~~~~~~L~~v~~ai~aGa~-Gv~--~GRNvfQ~~~p~~~~~  245 (266)
T PRK07226        173 GADIIKTNYTGDPESFREVVEGCPVPVVIAGGPK----TGSDLEFLQMVEDAMEAGAA-GVA--IGRNIFQHEDPAKITR  245 (266)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCC----CCCHHHHHHHHHHHHHCCCC-EEE--ECCHHHCCCCHHHHHH
T ss_conf             7998983599998999999984798789957888----89889999999999975994-665--2610235798999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999973
Q gi|254780812|r  336 DLVKTVRS  343 (346)
Q Consensus       336 ~~v~~vr~  343 (346)
                      ++..-||+
T Consensus       246 al~~iVH~  253 (266)
T PRK07226        246 AISAVVHE  253 (266)
T ss_pred             HHHHHHCC
T ss_conf             99998509


No 345
>pfam03562 MltA MltA specific insert domain. This beta barrel domain is found inserted in the MltA a murein degrading transglycosylase enzyme. This domain may be involved in peptidoglycan binding.
Probab=26.50  E-value=48  Score=14.22  Aligned_cols=48  Identities=21%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             CCHHHHHHH---HHHH-HHHHHHCCCC----CCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             320111147---9999-9999612467----7652467753013722289999999
Q gi|254780812|r  137 HITLIGFCG---APWT-VASYMISGGF----IKDHGQNRVFAYQNSRAFNWLLDFL  184 (346)
Q Consensus       137 ~~pLIGF~G---gP~T-lasYmieG~~----sk~~~~~~~~~~~~p~~~~~ll~~l  184 (346)
                      ++--+||+|   -||| +..+|++-|-    .-....++.|+.++|+...++|..-
T Consensus        51 ~~~rv~Yag~Ng~pY~sIGr~Li~~G~i~~~~~sm~~Ik~wl~~nP~~~~~~l~~N  106 (113)
T pfam03562        51 RTLRIGYAGKNGHPYTSIGRILVERGEIPKEEMSMQAIRAWLRANPDRVDELLERN  106 (113)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHC
T ss_conf             99999873679995521899999869978022699999999998989999999739


No 346
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=26.24  E-value=43  Score=14.55  Aligned_cols=52  Identities=15%  Similarity=0.149  Sum_probs=31.1

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf             7778764210245320111147-9999999961246776524677530137222899999
Q gi|254780812|r  124 FQSISILRKKLPNHITLIGFCG-APWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLD  182 (346)
Q Consensus       124 ~eAi~~~k~~l~~~~pLIGF~G-gP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~  182 (346)
                      .|-.++.+.-..+++-+-=||| ||||+.. ..-|..+ -+.     .--||+.++-|.+
T Consensus       177 ~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~-Ak~g~~~-V~A-----~diNP~A~~~L~e  229 (341)
T COG2520         177 TERARVAELVKEGETVLDMFAGVGPFSIPI-AKKGRPK-VYA-----IDINPDAVEYLKE  229 (341)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCHHHH-HHCCCCE-EEE-----EECCHHHHHHHHH
T ss_conf             789999863069988998357865401246-6547863-999-----9459899999999


No 347
>PRK11823 DNA repair protein RadA; Provisional
Probab=26.17  E-value=48  Score=14.18  Aligned_cols=10  Identities=0%  Similarity=0.205  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q ss_conf             6899998630
Q gi|254780812|r  227 GRIISAVRRK  236 (346)
Q Consensus       227 kkI~~~ik~~  236 (346)
                      .++++..|+.
T Consensus       197 ~~L~~~AK~~  206 (454)
T PRK11823        197 AELTRLAKQS  206 (454)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999744


No 348
>TIGR01496 DHPS dihydropteroate synthase; InterPro: IPR006390   This domain is present in sequences representing dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis.   Dihydropteroate synthase (2.5.1.15 from EC) (DHPS) catalyses the condensation of 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate to para-aminobenzoic acid to form 7,8-dihydropteroate. This is the second step in the three-step pathway leading from 6-hydroxymethyl-7,8-dihydropterin to 7,8-dihydrofolate. DHPS is the target of sulphonamides, which are substrate analogues that compete with para-aminobenzoic acid. Bacterial DHPS (gene sul or folP)  is a protein of about 275 to 315 amino acid residues that is either chromosomally encoded or found on various antibiotic resistance plasmids. In the lower eukaryote Pneumocystis carinii, DHPS is the C-terminal domain of a multifunctional folate synthesis enzyme (gene fas) .; GO: 0004156 dihydropteroate synthase activity, 0009396 folic acid and derivative biosynthetic process.
Probab=26.10  E-value=48  Score=14.17  Aligned_cols=147  Identities=15%  Similarity=0.123  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEEC-C---CCHHHCCHHHHHHHHCCCHHHHHHHHHHHC--CC--CEEECCCCCCCCC-HHHH
Q ss_conf             999999777775498167843-8---311006835677761272268999986308--86--2360243110000-1342
Q gi|254780812|r  186 DVSAEYLIAQIHAGVDVIQIF-D---THAGCLGEHEFENYAARSVGRIISAVRRKY--PN--AKFISFAKGAGYM-LKNY  256 (346)
Q Consensus       186 ~~~~~yl~~Qi~aGad~iqIF-D---s~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~--~~--vpiI~f~~g~~~~-l~~~  256 (346)
                      +...+++...++.|||+|=|- +   |-+..+||++=.+=+.|.++.|-+    .+  ++  +||..   +|.+- .-..
T Consensus        23 ~~A~~~a~~m~~~GA~IiDiGGeSTRPG~~~vs~~eE~~Rv~Pv~~~~~~----~~~~~dQC~~iSv---DT~~a~Va~~   95 (268)
T TIGR01496        23 DKALEHAERMLEEGADIIDIGGESTRPGADRVSPEEELNRVVPVIKALRE----QYLFSDQCVPISV---DTYRAEVARA   95 (268)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH----HCCCCCCCEEEEE---CCCCHHHHHH
T ss_conf             89999999999739988965770579769878979999988999999997----4489998414776---1882899999


Q ss_pred             HCCC-CCCEE----ECCCCCCH-HHHHHHCCCEEEECCC-CHHHHCCCH--HHHHHHHHH--------HHHHHCCCCCEE
Q ss_conf             0147-87223----04677998-9999707984696888-846770998--899999999--------999732599289
Q gi|254780812|r  257 RRLT-DSNAI----GLDWSVPL-SFALELQKEGPVQGNL-DPMRLVVGN--QVMIDGVNA--------ILDVLGSGPFIF  319 (346)
Q Consensus       257 ~~~~-g~d~i----siD~~~dl-~~a~~~~~~~~lqGNl-dP~~L~~~~--e~i~~~~~~--------~l~~~~~~~~I~  319 (346)
                      +-.. |++.|    ++...-++ +.|++..-.++||=|= .|..+...+  ++|.+|+..        +++.+-+..-|+
T Consensus        96 Al~~~Ga~iiNDv~G~~~dp~m~~vaae~~~~~vlMH~~g~P~~~q~~~~Y~dv~~e~~~fl~~~~~~~~~~Gv~~~I~L  175 (268)
T TIGR01496        96 ALEAFGADIINDVSGGQFDPDMLEVAAEYGVPLVLMHMRGTPETMQENPRYEDVVEEVLRFLEARAEELLAAGVAERIIL  175 (268)
T ss_pred             HHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             99867986786041146683589999984898898768763887666777656689999999999999997588665787


Q ss_pred             EECCCCCC-CCCHHHHHHHHH
Q ss_conf             60897633-668899999999
Q gi|254780812|r  320 NLGHGITP-QVDPKNVLDLVK  339 (346)
Q Consensus       320 nLGhGi~p-~tp~eNv~~~v~  339 (346)
                      =.|.|..+ +|+.+|++.|=.
T Consensus       176 DPG~GF~K~~t~~~Nl~ll~~  196 (268)
T TIGR01496       176 DPGIGFGKSDTVEHNLELLKR  196 (268)
T ss_pred             CCCCCCCCCCCHHHHHHHHHH
T ss_conf             177577888887678999986


No 349
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=26.09  E-value=48  Score=14.17  Aligned_cols=58  Identities=12%  Similarity=0.125  Sum_probs=32.9

Q ss_pred             CHHHHHCCCCCCEEECCCCC--CHHHHHH----------HCCCEEEECCCCHHHHCCCH-HHHHHHHHHHHHHH
Q ss_conf             01342014787223046779--9899997----------07984696888846770998-89999999999973
Q gi|254780812|r  252 MLKNYRRLTDSNAIGLDWSV--PLSFALE----------LQKEGPVQGNLDPMRLVVGN-QVMIDGVNAILDVL  312 (346)
Q Consensus       252 ~l~~~~~~~g~d~isiD~~~--dl~~a~~----------~~~~~~lqGNldP~~L~~~~-e~i~~~~~~~l~~~  312 (346)
                      .+..+.+  ..+.+|+|++.  |++...+          ..+..++.||+ |..+..|- +++.+...+..++.
T Consensus       213 FySpl~~--~lEllgiD~R~esniDg~~rlpA~~Ql~~~~~p~~vvvGn~-p~vlRESLL~~vf~~ge~fV~as  283 (363)
T PRK13277        213 FYSPIRD--RVELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHE-PATIRESLLEKVFDMGEKFVEAT  283 (363)
T ss_pred             CCCCCCC--CEEEEECCCEEEECHHHHHCCCHHHHHCCCCCCCEEEECCC-CCEEEHHHHHHHHHHHHHHHHHH
T ss_conf             0253237--50366311102414144423986788416899845998885-32431765799999999999999


No 350
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=26.07  E-value=49  Score=14.16  Aligned_cols=40  Identities=10%  Similarity=0.008  Sum_probs=19.5

Q ss_pred             HHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             977777549816784383110068356777612722689999863088623602431
Q gi|254780812|r  191 YLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK  247 (346)
Q Consensus       191 yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~  247 (346)
                      .+...+++|||+|-|=..   .            .+.++++++.+.  ++|++.|.+
T Consensus        94 na~~l~~~Ga~aVKlEgg---~------------~~~~~i~~L~~~--gIpV~gHiG  133 (240)
T cd06556          94 LAKTFMRAGAAGVKIEGG---E------------WHIETLQMLTAA--AVPVIAHTG  133 (240)
T ss_pred             HHHHHHHCCCCEEEECCC---H------------HHHHHHHHHHHC--CCCEEEEEC
T ss_conf             999999859998997987---5------------089999999987--994797635


No 351
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=26.02  E-value=49  Score=14.16  Aligned_cols=100  Identities=19%  Similarity=0.311  Sum_probs=50.4

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             77876421024532011114799999999612467765246775301372228999999999999997777754981678
Q gi|254780812|r  125 QSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQ  204 (346)
Q Consensus       125 eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iq  204 (346)
                      +-|+.+|+..  ++|+||-.=               +++...-  .|--|            . .+-+.+.+++|||+|.
T Consensus        50 ~dI~aIk~~v--~lPIIGi~K---------------~~~~~s~--VyITP------------t-~~ev~~l~~aGadiIA   97 (219)
T cd04729          50 EDIRAIRARV--DLPIIGLIK---------------RDYPDSE--VYITP------------T-IEEVDALAAAGADIIA   97 (219)
T ss_pred             HHHHHHHHCC--CCCEEEEEE---------------CCCCCCC--EEECC------------C-HHHHHHHHHCCCCEEE
T ss_conf             8999998328--998899995---------------6889998--45668------------8-9999999985999999


Q ss_pred             ECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf             438311006835677761272268999986308862360243110000134201478722304
Q gi|254780812|r  205 IFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGL  267 (346)
Q Consensus       205 IFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isi  267 (346)
                      + |..-- --|      .-..+.++++.+|+++ +..++-=|-......  .....|+|++|-
T Consensus        98 ~-DaT~R-~RP------~g~~l~~~i~~i~~~~-~~l~MAD~st~ee~~--~A~~~G~D~vgT  149 (219)
T cd04729          98 L-DATDR-PRP------DGETLAELIKRIHEEY-NCLLMADISTLEEAL--NAAKLGFDIIGT  149 (219)
T ss_pred             E-ECCCC-CCC------CCCCHHHHHHHHHHHH-CCEEEEECCCHHHHH--HHHHCCCCEEEC
T ss_conf             9-46788-798------9978999999999986-977887548899999--999849989970


No 352
>PRK01242 rpl39e 50S ribosomal protein L39e; Validated
Probab=25.84  E-value=33  Score=15.31  Aligned_cols=31  Identities=26%  Similarity=0.543  Sum_probs=19.1

Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHC---CCCCHHHH
Q ss_conf             0579999966998999976146231---23457999
Q gi|254780812|r    4 RKQKILEVLQGNVINPPPIWLMRQA---GRYLPEYR   36 (346)
Q Consensus         4 ~~~~~l~al~g~~~~r~PVW~MrQA---Grylpey~   36 (346)
                      ++-||.+|++..  .|+|+|+|=-.   -||.|--|
T Consensus         9 ~K~RLaKa~kQN--rrvP~Wv~~KT~r~v~~npKRR   42 (51)
T PRK01242          9 KKIRLAKALKQN--RRVPAWVIVKTNRRVRQHPKRR   42 (51)
T ss_pred             HHHHHHHHHHCC--CCCCEEEEEECCCCCCCCCCCC
T ss_conf             999999998555--9998489996488212686322


No 353
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids. Catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Calcium is required for cPLA2 to bind with membranes or phospholipids. Group IV cPLA2 includes six intercellular enzymes: cPLA2alpha, cPLA2beta, cPLA2gamma, cPLA2delta, cP
Probab=25.75  E-value=49  Score=14.12  Aligned_cols=92  Identities=20%  Similarity=0.255  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCC
Q ss_conf             111147999999996124677-6524677530137----22289999999999999977777549816784383110068
Q gi|254780812|r  140 LIGFCGAPWTVASYMISGGFI-KDHGQNRVFAYQN----SRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLG  214 (346)
Q Consensus       140 LIGF~GgP~TlasYmieG~~s-k~~~~~~~~~~~~----p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls  214 (346)
                      +-|-.||=|+++++......+ ++......++.++    |... ...+...+...+ +..-.+||-+ +.+-|-|+-.|+
T Consensus        78 iaGlSGgsW~~~sly~n~~~s~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-l~~K~~aG~~-~SltD~wGr~l~  154 (438)
T cd00147          78 LSGLSGSTWLMASLYSNPDWSQKDLDEAIEWLKRHVIKSPLLL-FSPERLKYYAKE-LEEKKKAGFN-VSLTDFWGLLLG  154 (438)
T ss_pred             HHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHH-HHHHHHCCCC-CCEEEHHHHHHH
T ss_conf             3016731999999985789876776554899986301274112-587899999999-9999967998-423339899999


Q ss_pred             HHHHHHHHCCCHHHHHHHHH
Q ss_conf             35677761272268999986
Q gi|254780812|r  215 EHEFENYAARSVGRIISAVR  234 (346)
Q Consensus       215 ~~~f~~f~~p~~kkI~~~ik  234 (346)
                      ...+.+...--+...-..++
T Consensus       155 ~~l~~~~~~s~ls~~~~~~~  174 (438)
T cd00147         155 YTLLKELTDSSLSDQREFVQ  174 (438)
T ss_pred             HHHCCCCCCCCHHHHHHHHH
T ss_conf             86247887554776799986


No 354
>COG2951 MltB Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]
Probab=25.55  E-value=50  Score=14.10  Aligned_cols=35  Identities=23%  Similarity=0.513  Sum_probs=15.2

Q ss_pred             HHHHHHHHHCCCCCCHHHH-HHHH-------HHHHHHHHHCCC
Q ss_conf             7778764210245320111-1479-------999999961246
Q gi|254780812|r  124 FQSISILRKKLPNHITLIG-FCGA-------PWTVASYMISGG  158 (346)
Q Consensus       124 ~eAi~~~k~~l~~~~pLIG-F~Gg-------P~TlasYmieG~  158 (346)
                      +.+++++++.-.+...+.| .+|+       |=|...|.+.|.
T Consensus       172 ~aaL~ii~~gdv~~~~~~GSwAGAmGq~QFmPss~~~YaVD~D  214 (343)
T COG2951         172 IAALKIIQDGDVDPLALKGSWAGAMGQTQFMPSSYLKYAVDGD  214 (343)
T ss_pred             HHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCC
T ss_conf             9999987616987311341164314776657188998610578


No 355
>PRK01636 ccrB camphor resistance protein CrcB; Provisional
Probab=25.46  E-value=50  Score=14.09  Aligned_cols=41  Identities=10%  Similarity=0.172  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHH
Q ss_conf             1114799999999-61246776524677530137-2228999999999999997
Q gi|254780812|r  141 IGFCGAPWTVASY-MISGGFIKDHGQNRVFAYQN-SRAFNWLLDFLSDVSAEYL  192 (346)
Q Consensus       141 IGF~GgP~TlasY-mieG~~sk~~~~~~~~~~~~-p~~~~~ll~~lt~~~~~yl  192 (346)
                      .||||| ||+.|- ..|         +.. +.++ -+..-.++-.+..++.-.+
T Consensus        54 TGf~Gg-fTTFSTFs~E---------~~~-L~~~~g~~~~A~~Y~~~Svi~Gl~   96 (118)
T PRK01636         54 TGIMGG-LSTFSSFVYG---------AVE-MAKSPTEVLVSICYLVASLIVGYI   96 (118)
T ss_pred             HHHHCC-CHHHHHHHHH---------HHH-HHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             766056-1358999999---------999-998378799999999999999999


No 356
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=25.25  E-value=35  Score=15.19  Aligned_cols=62  Identities=19%  Similarity=0.313  Sum_probs=34.3

Q ss_pred             EECCHHHCCCEEEECCCC-----CCCCCCCC-HH-HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             001043244337316887-----52223333-35-5420567012344323787778764210245320111147
Q gi|254780812|r   78 LVIADALGRNVRFVENEG-----PRMDPITT-QE-IYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCG  145 (346)
Q Consensus        78 l~~~ealG~~v~f~~~~G-----P~~~p~~~-~~-~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~G  145 (346)
                      ++.-+-|-++|+|  |+.     |.+.++.. +- ...-..|...-...+..-|+.|+.+-+   ++..++ |||
T Consensus         2 vsmk~LleaGvHF--GHqtRRWNPkMk~fIf~eRKngihIIDL~kT~~~~~~Ay~~v~~~~~---~gg~iL-FVG   70 (227)
T TIGR01011         2 VSMKDLLEAGVHF--GHQTRRWNPKMKPFIFGERKNGIHIIDLQKTLQLLEEAYNFVREVVA---NGGKIL-FVG   70 (227)
T ss_pred             CCHHHHHHCCCCC--CCEECCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHH---CCCEEE-EEE
T ss_conf             7657686388543--75422368889885532012785122578999999999999999998---199588-851


No 357
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=25.25  E-value=50  Score=14.06  Aligned_cols=40  Identities=13%  Similarity=0.169  Sum_probs=31.3

Q ss_pred             HCCCHHHHHHHHH-------------------HHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             0137222899999-------------------999999999777775498167843831
Q gi|254780812|r  170 AYQNSRAFNWLLD-------------------FLSDVSAEYLIAQIHAGVDVIQIFDTH  209 (346)
Q Consensus       170 ~~~~p~~~~~ll~-------------------~lt~~~~~yl~~Qi~aGad~iqIFDs~  209 (346)
                      +-+.||++-.+-+                   .+++.+++-++-.++.|-|+|-+.||-
T Consensus       207 IDERPEEVTdm~r~v~~eV~aStfD~~~~~H~~vae~~lerAkRlvE~G~DVvillDSi  265 (416)
T PRK09376        207 IDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSI  265 (416)
T ss_pred             ECCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             04893477787750461899977999878999999999999999987699789997315


No 358
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967    This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=25.20  E-value=49  Score=14.12  Aligned_cols=45  Identities=16%  Similarity=0.318  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             37877787642102453201-------1114799999999612467765246775
Q gi|254780812|r  121 LPIFQSISILRKKLPNHITL-------IGFCGAPWTVASYMISGGFIKDHGQNRV  168 (346)
Q Consensus       121 ~~v~eAi~~~k~~l~~~~pL-------IGF~GgP~TlasYmieG~~sk~~~~~~~  168 (346)
                      ||+.||+|.+.++..+=-.|       =||.+|||=|.= ||  |..-||.-+++
T Consensus       197 PyYaEalR~L~E~~A~pa~lDA~LRdg~GF~MGpfELtD-LI--G~DVNfAVTcS  248 (508)
T TIGR02279       197 PYYAEALRVLEEQVAEPAVLDALLRDGAGFAMGPFELTD-LI--GHDVNFAVTCS  248 (508)
T ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHH-HC--CCCCCHHHHHH
T ss_conf             317899987302576846898997505888874466755-20--45523000010


No 359
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=25.19  E-value=50  Score=14.05  Aligned_cols=39  Identities=26%  Similarity=0.311  Sum_probs=24.6

Q ss_pred             HHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             146231234579999976155389984279999998721287629872652133
Q gi|254780812|r   23 WLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSD   76 (346)
Q Consensus        23 W~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsD   76 (346)
                      |.|++.|.++|-|+..+-.               ...-.-+++|+.+..|+--|
T Consensus        34 ~~~~r~Gi~lP~~~~~~~~---------------~~l~~ii~~~~p~~lIilGD   72 (235)
T COG1407          34 ESLARRGINLPRYQTDRIL---------------KRLDRIIERYGPKRLIILGD   72 (235)
T ss_pred             HHHHHCCCCCCCHHHHHHH---------------HHHHHHHHHCCCCEEEECCC
T ss_conf             9887357626701589999---------------99999998609877999075


No 360
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.15  E-value=50  Score=14.05  Aligned_cols=17  Identities=18%  Similarity=0.130  Sum_probs=11.9

Q ss_pred             HHHHHHHCCCCEEEECC
Q ss_conf             97777754981678438
Q gi|254780812|r  191 YLIAQIHAGVDVIQIFD  207 (346)
Q Consensus       191 yl~~Qi~aGad~iqIFD  207 (346)
                      |++...++|+|.+-|.|
T Consensus        96 F~~~~~~~GvdGvIipD  112 (247)
T PRK13125         96 LLNTAKEVGARGVLFPD  112 (247)
T ss_pred             HHHHHHHCCCCEEEECC
T ss_conf             99999985997588338


No 361
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273   This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=25.14  E-value=43  Score=14.52  Aligned_cols=81  Identities=19%  Similarity=0.192  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCC
Q ss_conf             79999999961246776524677530137222899999999999999777775498167843831100683567776127
Q gi|254780812|r  145 GAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAAR  224 (346)
Q Consensus       145 GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p  224 (346)
                      =|=|-|+|    |+.|.-|...- .+.++|+...+|-+.|+..++.|.-.     .|.| +-=..+|++....       
T Consensus        14 EGhFlLsS----G~hS~~flQ~~-~ll~~P~~~~~lg~~LA~~i~~~~~~-----~d~i-vsPA~GGv~~~Ye-------   75 (205)
T TIGR01367        14 EGHFLLSS----GKHSPYFLQSA-KLLEDPELAEKLGEELAKKILKYKLE-----VDVI-VSPAMGGVILGYE-------   75 (205)
T ss_pred             CCCEEEEC----CCCCCHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHCCC-----CCEE-ECCCCCHHHHHHH-------
T ss_conf             37122405----76142366565-67616368999999999999982787-----0158-6473000468889-------


Q ss_pred             CHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             22689999863088623602431
Q gi|254780812|r  225 SVGRIISAVRRKYPNAKFISFAK  247 (346)
Q Consensus       225 ~~kkI~~~ik~~~~~vpiI~f~~  247 (346)
                          +..++++..|+++.|+--|
T Consensus        76 ----~AR~L~etlPd~R~iF~Er   94 (205)
T TIGR01367        76 ----VARALSETLPDVRSIFAER   94 (205)
T ss_pred             ----HHHHHHHCCCCCCEEEEEE
T ss_conf             ----9987410068885267776


No 362
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=25.08  E-value=32  Score=15.48  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=38.6

Q ss_pred             EECCCCHH------HHCCCHHH-HHHHHHHHHHHHCC-C----CCEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             96888846------77099889-99999999997325-9----92896089763366889999999999730
Q gi|254780812|r  285 VQGNLDPM------RLVVGNQV-MIDGVNAILDVLGS-G----PFIFNLGHGITPQVDPKNVLDLVKTVRSE  344 (346)
Q Consensus       285 lqGNldP~------~L~~~~e~-i~~~~~~~l~~~~~-~----~~I~nLGhGi~p~tp~eNv~~~v~~vr~~  344 (346)
                      -+++.++.      .++++.|. |.+.+.-+|++.+. .    .+.|-.+|.+.|.+.-+-...+-++.|+.
T Consensus       147 k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e~~~~a~~~~~~la~ls~r~a~~~~~~~~~~~  218 (222)
T COG4912         147 KKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNELWVRAFANAHDLAPLSDREARKNLKDALREK  218 (222)
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHH
T ss_conf             376102679999999806809999999999999997206588999998776424222066766331456777


No 363
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=24.53  E-value=52  Score=13.97  Aligned_cols=32  Identities=13%  Similarity=0.167  Sum_probs=18.0

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             3567776127226899998630886236024311
Q gi|254780812|r  215 EHEFENYAARSVGRIISAVRRKYPNAKFISFAKG  248 (346)
Q Consensus       215 ~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g  248 (346)
                      .+.|.++-....+-+.+.+++.  |+|++.=++|
T Consensus       289 d~~yl~~Ri~qv~yL~~~L~~~--GvPvv~P~GG  320 (431)
T cd00617         289 EEDYLRHRVEQVRYLGDRLDEA--GVPIVEPAGG  320 (431)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHC--CCCEECCCCC
T ss_conf             6799997799999999999988--9966668974


No 364
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=24.53  E-value=52  Score=13.97  Aligned_cols=63  Identities=13%  Similarity=0.078  Sum_probs=32.0

Q ss_pred             CCCHHHHHHHHHCCCCCCCCC-CH------HHHHCC---CCCHHHHHHHH-------HCCCHHHHHCCHHHHHHHHHHHH
Q ss_conf             976057999996699899997-61------462312---34579999976-------15538998427999999872128
Q gi|254780812|r    1 MNERKQKILEVLQGNVINPPP-IW------LMRQAG---RYLPEYRQIRK-------KFKNFLDMCYTPEYTVELTLQPI   63 (346)
Q Consensus         1 M~~~~~~~l~al~g~~~~r~P-VW------~MrQAG---rylpey~~~r~-------~~~~f~~~~~~pela~evtl~p~   63 (346)
                      |+++-.||-+.++.+..=+.| +|      +..|||   -|+.-|---..       ..-++-|++....-.++.|-.|+
T Consensus         2 ~~s~~~rlR~ll~~~~~l~~pg~~D~lsA~l~e~aGF~a~~~sG~~~saa~lG~PD~gl~t~~e~~~~~~~I~~a~~lPv   81 (292)
T PRK11320          2 LHSAGARFRAALAAEKPLQIVGTINAYHALLAERAGFQAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPL   81 (292)
T ss_pred             CCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf             89879999999728994895578888999999985999999642999888569998454778899999999983558887


No 365
>pfam07050 consensus
Probab=24.49  E-value=29  Score=15.69  Aligned_cols=16  Identities=31%  Similarity=0.260  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             8999999999999997
Q gi|254780812|r  177 FNWLLDFLSDVSAEYL  192 (346)
Q Consensus       177 ~~~ll~~lt~~~~~yl  192 (346)
                      ++.||+-++..+..-+
T Consensus       100 lq~LL~eVs~~Ia~~V  115 (145)
T pfam07050       100 LQSLLDEVSSKIANSV  115 (145)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             9999999999999975


No 366
>pfam04476 DUF556 Protein of unknown function (DUF556). Family of uncharacterized, hypothetical prokaryotic proteins.
Probab=24.39  E-value=52  Score=13.95  Aligned_cols=66  Identities=15%  Similarity=0.294  Sum_probs=26.9

Q ss_pred             HHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC-CCCCHHHHHCCCCCCEEEC
Q ss_conf             75498167843831100683567776127226899998630886236024311-0000134201478722304
Q gi|254780812|r  196 IHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG-AGYMLKNYRRLTDSNAIGL  267 (346)
Q Consensus       196 i~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g-~~~~l~~~~~~~g~d~isi  267 (346)
                      .++|++.+|| ||+.- =+...|+-+..+-+++.++..++.  +. .....+. ....++.+.. .++|.+++
T Consensus       141 ~~~G~~gvMi-DT~~K-~g~sl~d~~~~~~L~~fv~~a~~~--gl-~~gLAGSL~~~di~~l~~-l~pd~~G~  207 (235)
T pfam04476       141 ADAGADIAML-DTAIK-DGTTLFDHMKIEDLESFVKLARDN--GL-KVALAGSISWEHIEPLKE-IGTDIVGV  207 (235)
T ss_pred             HHCCCCEEEE-ECCCC-CCCCHHHHCCHHHHHHHHHHHHHC--CC-EEEEECCCCHHHHHHHHH-CCCCEEEE
T ss_conf             9759978998-74667-897666649999999999999975--98-399845788888899986-49998997


No 367
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=24.30  E-value=52  Score=13.94  Aligned_cols=79  Identities=22%  Similarity=0.337  Sum_probs=47.1

Q ss_pred             EEECCCCCC-CCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCEEEECCC--CHHHHCCCHHHHHHHHHHHHHHHCCCC-
Q ss_conf             360243110-0001342014787223046779989999707984696888--846770998899999999999732599-
Q gi|254780812|r  241 KFISFAKGA-GYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNL--DPMRLVVGNQVMIDGVNAILDVLGSGP-  316 (346)
Q Consensus       241 piI~f~~g~-~~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lqGNl--dP~~L~~~~e~i~~~~~~~l~~~~~~~-  316 (346)
                      .|..+-+|. ...+..+.+ -|+++.-+-|..+.++.....++..+.-|=  ||..+    .++.+.++++++  ++.| 
T Consensus       173 ~V~viD~GvK~nIlr~L~~-rg~~v~VvP~~~~~~~I~~~~pDGIflSNGPGDP~~~----~~~i~~ik~li~--~~~Pi  245 (355)
T PRK12564        173 HVVAIDFGVKRNILRELAE-RGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPAAL----DYAIEMIKELLE--GKIPI  245 (355)
T ss_pred             EEEEEECCCHHHHHHHHHH-CCCEEEEECCCCCHHHHHCCCCCEEEECCCCCCHHHH----HHHHHHHHHHHC--CCCCE
T ss_conf             8999937873889999998-7986999689787657641488889967999996887----999999999852--69878


Q ss_pred             CEEEECCCCC
Q ss_conf             2896089763
Q gi|254780812|r  317 FIFNLGHGIT  326 (346)
Q Consensus       317 ~I~nLGhGi~  326 (346)
                      +=-.|||-++
T Consensus       246 fGICLGHQll  255 (355)
T PRK12564        246 FGICLGHQLL  255 (355)
T ss_pred             EEECHHHHHH
T ss_conf             9988879999


No 368
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=24.24  E-value=52  Score=13.93  Aligned_cols=146  Identities=19%  Similarity=0.241  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------
Q ss_conf             3787778764210245320111147999999--9961246776524677530137222899999999999999-------
Q gi|254780812|r  121 LPIFQSISILRKKLPNHITLIGFCGAPWTVA--SYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY-------  191 (346)
Q Consensus       121 ~~v~eAi~~~k~~l~~~~pLIGF~GgP~Tla--sYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y-------  191 (346)
                      +-.+++|+.+|++++++ -+|| +|.=-|..  .-.++-|  -+|.       --|-...++++.+-+.-+-|       
T Consensus        46 p~a~~~I~~l~~~~~~~-~~iG-AGTVlt~e~~~~ai~aG--A~Fi-------VSP~~~~~vi~~a~~~~i~~iPG~~TP  114 (206)
T PRK09140         46 PDPFDSIAALVKALGDD-ALIG-AGTVLSPEQVDRLADAG--GRLI-------VTPNIDPEVIRRAVAYGMTVMPGVATP  114 (206)
T ss_pred             CCHHHHHHHHHHHCCCC-EEEE-EEECCCHHHHHHHHHCC--CCEE-------ECCCCCHHHHHHHHHCCCCCCCCCCCH
T ss_conf             76999999999967986-5998-62046799999999859--9999-------999998999999998299652785999


Q ss_pred             --HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC-CCEEECCCCCC-CCCHHHHHCCCCCCEEEC
Q ss_conf             --77777549816784383110068356777612722689999863088-62360243110-000134201478722304
Q gi|254780812|r  192 --LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP-NAKFISFAKGA-GYMLKNYRRLTDSNAIGL  267 (346)
Q Consensus       192 --l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~-~vpiI~f~~g~-~~~l~~~~~~~g~d~isi  267 (346)
                        +..-.++|++++.+|=  |+.+++.+++..            +.-.| +++++ =++|. ..++.+|.+ .|+.++++
T Consensus       115 sEi~~A~~~Ga~~vKlFP--A~~~Gp~~ikal------------~~p~P~~~~~~-ptGGV~~~N~~~~l~-aGa~avG~  178 (206)
T PRK09140        115 TEAFAALRAGADALKLFP--ASQLGPAGIKAL------------RAVLPPDVPVF-AVGGVTPENLAPYLA-AGAAGFGL  178 (206)
T ss_pred             HHHHHHHHCCCCEEEECC--HHCCCHHHHHHH------------HCCCCCCCEEE-ECCCCCHHHHHHHHH-CCCCEEEE
T ss_conf             999999985987156575--110599999998------------64389999899-537988888999998-69919996


Q ss_pred             CCCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             6779989999707984696888846770998899999999999732
Q gi|254780812|r  268 DWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLG  313 (346)
Q Consensus       268 D~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~  313 (346)
                      .+..-                 +|.   .+-+++++.++++.+..+
T Consensus       179 Gs~L~-----------------~~~---~~~~~i~~~a~~fv~a~~  204 (206)
T PRK09140        179 GSALY-----------------RPG---QSAEEVAERARAFVAAYR  204 (206)
T ss_pred             CHHCC-----------------CCC---CCHHHHHHHHHHHHHHHH
T ss_conf             06515-----------------999---999999999999999997


No 369
>COG2167 RPL39 Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]
Probab=24.18  E-value=37  Score=15.02  Aligned_cols=34  Identities=29%  Similarity=0.605  Sum_probs=22.1

Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHH---CCCCCHHHHHHH
Q ss_conf             057999996699899997614623---123457999997
Q gi|254780812|r    4 RKQKILEVLQGNVINPPPIWLMRQ---AGRYLPEYRQIR   39 (346)
Q Consensus         4 ~~~~~l~al~g~~~~r~PVW~MrQ---AGrylpey~~~r   39 (346)
                      ++.|+.+|++..  -|.|+|.|=-   -++|.|--|.-|
T Consensus         9 ~K~RLaKA~KqN--rrvP~Wv~~kT~~~v~~npkRRhWR   45 (51)
T COG2167           9 KKLRLAKALKQN--RRVPVWVRVKTNRRVRYNPKRRHWR   45 (51)
T ss_pred             HHHHHHHHHHCC--CCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf             999999999737--8898279996188401584664443


No 370
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.10  E-value=53  Score=13.92  Aligned_cols=67  Identities=15%  Similarity=0.261  Sum_probs=45.3

Q ss_pred             HHHHHHCCCCEEEECCCCHH---HC---CHHHHHHHHCCCHHHHHHHHHHHCC--CCEEECCCCCCCCCHHHHHC
Q ss_conf             77777549816784383110---06---8356777612722689999863088--62360243110000134201
Q gi|254780812|r  192 LIAQIHAGVDVIQIFDTHAG---CL---GEHEFENYAARSVGRIISAVRRKYP--NAKFISFAKGAGYMLKNYRR  258 (346)
Q Consensus       192 l~~Qi~aGad~iqIFDs~ag---~L---s~~~f~~f~~p~~kkI~~~ik~~~~--~vpiI~f~~g~~~~l~~~~~  258 (346)
                      ++.--++|.+.+.|+=||.+   ++   ..++=-+|+.|.+++.+..+....+  .+-++.|+-|++...+.+.+
T Consensus       137 aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~LrQ  211 (377)
T COG4782         137 AQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKRIYLLAHSMGTWLLMEALRQ  211 (377)
T ss_pred             HHHHHHCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf             988763189820699974788732000145556553389999999999747888628999854427999999999


No 371
>PRK04374 PII uridylyl-transferase; Provisional
Probab=23.90  E-value=53  Score=13.89  Aligned_cols=59  Identities=15%  Similarity=0.412  Sum_probs=36.1

Q ss_pred             HHHHHHHHCCCCCCCCCCH-HHHHC---CCCCHHHHHHHHHCCCHHHHHC--CHHHHHHHHHHHHHHCC
Q ss_conf             5799999669989999761-46231---2345799999761553899842--79999998721287629
Q gi|254780812|r    5 KQKILEVLQGNVINPPPIW-LMRQA---GRYLPEYRQIRKKFKNFLDMCY--TPEYTVELTLQPIRRYN   67 (346)
Q Consensus         5 ~~~~l~al~g~~~~r~PVW-~MrQA---Grylpey~~~r~~~~~f~~~~~--~pela~evtl~p~~r~~   67 (346)
                      .++|+.-+++...  .++| .|.+.   |||+||+..++..++  +|+.|  |++-=+=-++.-+++|.
T Consensus       401 r~~Fl~iL~~p~~--~~~L~~M~~~GvL~~yiPef~~I~g~mQ--fDlfH~YTVDeHTl~~v~~l~~f~  465 (869)
T PRK04374        401 RERFMALLRGPRA--VETLNRMARLGVLGQWIPAFASVSGRMQ--FDLFHVYTVDQHTLMVLRNIALFA  465 (869)
T ss_pred             HHHHHHHHCCCCH--HHHHHHHHHHCCHHHHHHHHHHHHCCCC--CCHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             9999998079863--7999998872869999889998738724--430230707689999999999985


No 372
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=23.63  E-value=54  Score=13.86  Aligned_cols=68  Identities=10%  Similarity=0.066  Sum_probs=38.3

Q ss_pred             HCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCC------
Q ss_conf             54981678438311006835677761272268999986308862360243110000134201478722304677------
Q gi|254780812|r  197 HAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWS------  270 (346)
Q Consensus       197 ~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~------  270 (346)
                      ..|||+|-+   -+..|++++..+|.        +..++.+-.+-+  =+.+-.. ++.-.+ .+++.+|+.++      
T Consensus       122 ~~GADaILL---Iaa~L~~~~l~~l~--------~~A~~lGle~Lv--EvH~~~E-l~~al~-~~~~iIGINNRnL~tf~  186 (247)
T PRK13957        122 AFGASAILL---IVRILTPSQIKSFL--------KHASSLGMDVLV--EVHTEDE-AKLALD-CGAEIIGINTRDLDTFQ  186 (247)
T ss_pred             HCCCCEEHH---HHHCCCHHHHHHHH--------HHHHHHCCEEEE--EECCHHH-HHHHHH-CCCCEEEEECCCCCCCC
T ss_conf             739985126---88508999999999--------999983881562--5589999-999984-89988987457732146


Q ss_pred             CCHHHHHHH
Q ss_conf             998999970
Q gi|254780812|r  271 VPLSFALEL  279 (346)
Q Consensus       271 ~dl~~a~~~  279 (346)
                      +|+....++
T Consensus       187 vd~~~~~~l  195 (247)
T PRK13957        187 IHQNLVEEV  195 (247)
T ss_pred             CCHHHHHHH
T ss_conf             398899999


No 373
>PRK06801 hypothetical protein; Provisional
Probab=23.60  E-value=54  Score=13.85  Aligned_cols=125  Identities=14%  Similarity=0.239  Sum_probs=63.0

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             0137222899999999999999777775498167843-831100683567776127226899998630886236024311
Q gi|254780812|r  170 AYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG  248 (346)
Q Consensus       170 ~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g  248 (346)
                      +|.+|+.+.++.+              +.|+|++.+. -+.-|.-..+      -.-.-++++.+++.. ++|+..|. |
T Consensus       154 ~~T~peea~~Fv~--------------~TgvD~LAvaiGn~HG~yk~~------p~L~~~~L~~I~~~~-~vPLVLHG-g  211 (286)
T PRK06801        154 LFTDPAIARDFVD--------------RTGIDALAVAIGNAHGKYKGE------PKLDFARLAAIHQQT-GLPLVLHG-G  211 (286)
T ss_pred             CCCCHHHHHHHHH--------------HHCCCEEEEECCCCCCCCCCC------CCCCHHHHHHHHHHC-CCCEEEEC-C
T ss_conf             2689999999999--------------869989975225455676898------867999999999852-99989779-9


Q ss_pred             CCCCHHHHHCC--CCCCEEECCCCCCHHHHHHHCCCEE-EECCCCH-HHHCCC-HHHHHHHHHHHHHHHCCCC
Q ss_conf             00001342014--7872230467799899997079846-9688884-677099-8899999999999732599
Q gi|254780812|r  249 AGYMLKNYRRL--TDSNAIGLDWSVPLSFALELQKEGP-VQGNLDP-MRLVVG-NQVMIDGVNAILDVLGSGP  316 (346)
Q Consensus       249 ~~~~l~~~~~~--~g~d~isiD~~~dl~~a~~~~~~~~-lqGNldP-~~L~~~-~e~i~~~~~~~l~~~~~~~  316 (346)
                      ++-.-+++.+.  .|+.=+.++..........+..... =-+..|| ..++.+ .+.+++.+++.++.++..|
T Consensus       212 SGi~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~r~~l~~~~~~~d~~~~l~~~~~~a~k~vv~~ki~lfGS~g  284 (286)
T PRK06801        212 SGISDTDFRRAISLGIHKINFYTGMSQAALAAVEQKMTHRHAIYDEFAELFLGIEEAISDTVAQQMRIFGSSE  284 (286)
T ss_pred             CCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999997797699828689999999999999868876795899879999999999999999978798


No 374
>pfam04072 LCM Leucine carboxyl methyltransferase. Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence.
Probab=23.57  E-value=54  Score=13.85  Aligned_cols=99  Identities=16%  Similarity=0.178  Sum_probs=42.9

Q ss_pred             HCCCCE-EECCCCCCCCCHHHHHCCC-CCCEEECCCCCCHHHHHHHCCCEE--EECCCC--HHHHCCCHHHHHHHHHHHH
Q ss_conf             088623-6024311000013420147-872230467799899997079846--968888--4677099889999999999
Q gi|254780812|r  236 KYPNAK-FISFAKGAGYMLKNYRRLT-DSNAIGLDWSVPLSFALELQKEGP--VQGNLD--PMRLVVGNQVMIDGVNAIL  309 (346)
Q Consensus       236 ~~~~vp-iI~f~~g~~~~l~~~~~~~-g~d~isiD~~~dl~~a~~~~~~~~--lqGNld--P~~L~~~~e~i~~~~~~~l  309 (346)
                      .+|++. ++...+|-......+.... ++..+-+|...-++.-+++.++..  ...|.-  |..+..  .    ...+.|
T Consensus        67 ~~~~~~qVV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~k~~~l~~~~~~~~~~~~~v~~Dl~~--~----~w~~~L  140 (175)
T pfam04072        67 AHPGARQVVILGAGLDTRAYRLDWPAGGVRWFEVDLPEVIEFKRRLLPEAGARPPARRRYVAVDLRD--D----DWLDAL  140 (175)
T ss_pred             HCCCCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC--H----HHHHHH
T ss_conf             5969878999696433547664698899459994778899999999876368898675884688764--0----579999


Q ss_pred             HHHC---CCCCEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             9732---5992896089763366889999999999
Q gi|254780812|r  310 DVLG---SGPFIFNLGHGITPQVDPKNVLDLVKTV  341 (346)
Q Consensus       310 ~~~~---~~~~I~nLGhGi~p~tp~eNv~~~v~~v  341 (346)
                      ...+   +.|-++- --|+++=-++|.+++++..+
T Consensus       141 ~~~g~d~~~ptl~i-~EGvl~Yl~~~~v~~ll~~i  174 (175)
T pfam04072       141 RAAGFDPSRPTLFV-AEGLLMYLTEEAVDALLRRI  174 (175)
T ss_pred             HHCCCCCCCCEEEE-ECCCHHCCCHHHHHHHHHHH
T ss_conf             97488989997998-64533379999999999986


No 375
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=23.55  E-value=36  Score=15.05  Aligned_cols=14  Identities=21%  Similarity=0.183  Sum_probs=9.7

Q ss_pred             HHHHCCCCEEEECC
Q ss_conf             28762987265213
Q gi|254780812|r   62 PIRRYNFDAAILFS   75 (346)
Q Consensus        62 p~~r~~~DaaIlFs   75 (346)
                      =++...+||.|+++
T Consensus        59 ~l~~~~vdGiIi~~   72 (275)
T cd06295          59 YLASGRADGVILIG   72 (275)
T ss_pred             HHHHCCCCEEEEEC
T ss_conf             99848998899979


No 376
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=23.54  E-value=54  Score=13.84  Aligned_cols=163  Identities=18%  Similarity=0.232  Sum_probs=79.7

Q ss_pred             CCHHHHHCCHHHHHHH---HHHHHHHCCCCEEEECCCCEECCHHH------CCCEEEECCCCCCCCCCCCHHHHHCCCCC
Q ss_conf             5389984279999998---72128762987265213320010432------44337316887522233333554205670
Q gi|254780812|r   43 KNFLDMCYTPEYTVEL---TLQPIRRYNFDAAILFSDILVIADAL------GRNVRFVENEGPRMDPITTQEIYLLNPNI  113 (346)
Q Consensus        43 ~~f~~~~~~pela~ev---tl~p~~r~~~DaaIlFsDIl~~~eal------G~~v~f~~~~GP~~~p~~~~~~~~~~~~~  113 (346)
                      .+|.|..-+|+|...+   |-.|+         .-|  -+.|+.+      |..  +.|= |      +.+.. ...-. 
T Consensus        41 At~vDIA~dp~LV~~v~~~~~lPi---------CVS--aVep~~f~~aV~AGA~--lvEI-G------NfDsF-Y~qGr-   98 (243)
T pfam04481        41 ATYVDIAADPQLVKVVKSVSNIPI---------CVS--AVEPELLYEAVLAGAD--LVEI-G------NFDSF-YKQGR-   98 (243)
T ss_pred             CCEEEECCCHHHHHHHHHHCCCCE---------EEE--CCCHHHHHHHHHHCCC--EEEE-C------CHHHH-HHCCC-
T ss_conf             976874179999999997289985---------860--4797888999982787--8986-4------53647-65476-


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12344323787778764210245320111147999999996124677652467753013722289999999999999977
Q gi|254780812|r  114 DLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLI  193 (346)
Q Consensus       114 ~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~  193 (346)
                       .+  .-..|++-.+.+|+-|| +++|=  |.=|.+|--                  .+.               ++.+.
T Consensus        99 -~f--~a~eVL~Lt~~Tr~LLP-~~~Ls--VTVPHiL~l------------------d~Q---------------v~LA~  139 (243)
T pfam04481        99 -VL--SVCEIIALVKETRKLLP-HTPLC--VTIPHILKL------------------KEQ---------------INLAK  139 (243)
T ss_pred             -EE--CHHHHHHHHHHHHHHCC-CCCEE--EECCCCCCH------------------HHH---------------HHHHH
T ss_conf             -64--49999999999997689-98447--745763567------------------899---------------99999


Q ss_pred             HHHHCCCCEEEECCC------CHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf             777549816784383------11006835677761272268999986308862360243110000134201478722304
Q gi|254780812|r  194 AQIHAGVDVIQIFDT------HAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGL  267 (346)
Q Consensus       194 ~Qi~aGad~iqIFDs------~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isi  267 (346)
                      ..+++|||.||-=-.      ..|.+   -.-|-+.|.+.--.+ + .+.-++|+++=+ |.+..--.|.-..|+.++++
T Consensus       140 ~L~~~GaDiIQTEGgtss~p~~~g~~---glIekaapTLAaay~-I-S~~v~vPVlcAS-GlS~vT~PmAiaaGAsGVGV  213 (243)
T pfam04481       140 QLESLGIDLIQTEGKITSISKNHCVN---DLIEKSASTLASTYE-I-SKHVQLPVICAS-GLSDVTVPLAFSYGASGIGI  213 (243)
T ss_pred             HHHHHCCCEEECCCCCCCCCCCCCHH---HHHHHHHHHHHHHHH-H-HHCCCCCEEECC-CCCHHHHHHHHHCCCCCCCH
T ss_conf             99981887787289877788884257---779887588999999-9-861787667546-76421478899748771006


Q ss_pred             CCCCC
Q ss_conf             67799
Q gi|254780812|r  268 DWSVP  272 (346)
Q Consensus       268 D~~~d  272 (346)
                      ++.++
T Consensus       214 GSavn  218 (243)
T pfam04481       214 GSAVS  218 (243)
T ss_pred             HHHHH
T ss_conf             57765


No 377
>TIGR01762 chlorin-enz chlorinating enzymes; InterPro: IPR010092   This entry represents a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula . SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae , . CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in P. syringae ..
Probab=23.29  E-value=22  Score=16.56  Aligned_cols=10  Identities=50%  Similarity=1.086  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHH
Q ss_conf             11479999999
Q gi|254780812|r  142 GFCGAPWTVAS  152 (346)
Q Consensus       142 GF~GgP~Tlas  152 (346)
                      ||+| ||||.+
T Consensus        15 GfIG-PFtly~   24 (293)
T TIGR01762        15 GFIG-PFTLYE   24 (293)
T ss_pred             CCCC-CCCCCC
T ss_conf             8435-757878


No 378
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=23.26  E-value=21  Score=16.68  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=19.1

Q ss_pred             CCCC-EEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf             4981-6784383110068356777612722689999863088623602431100
Q gi|254780812|r  198 AGVD-VIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG  250 (346)
Q Consensus       198 aGad-~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~  250 (346)
                      |-|| ++.+..+|+.- -+++|.+.     .+|+.+.+  .|++|+. +.++.+
T Consensus       153 A~adfVi~~YNP~s~~-R~~~~~~a-----~eil~~~r--~~~tpVg-ivrnag  197 (249)
T COG1010         153 AEADFVIALYNPISKR-RPEQLGRA-----FEILREHR--SPDTPVG-IVRNAG  197 (249)
T ss_pred             HHCCEEEEEECCCCCC-CHHHHHHH-----HHHHHHHC--CCCCCEE-EEECCC
T ss_conf             6479799997774313-52789999-----99999855--8998489-983378


No 379
>KOG1436 consensus
Probab=23.23  E-value=28  Score=15.84  Aligned_cols=29  Identities=21%  Similarity=0.194  Sum_probs=17.3

Q ss_pred             HHCCCCEEEECCCCHHHCCHHHHHHHHCCC
Q ss_conf             754981678438311006835677761272
Q gi|254780812|r  196 IHAGVDVIQIFDTHAGCLGEHEFENYAARS  225 (346)
Q Consensus       196 i~aGad~iqIFDs~ag~Ls~~~f~~f~~p~  225 (346)
                      ...|... ++|+-.|-.|+.++.++++.-+
T Consensus       247 ~~~~~~~-pvl~kiapDL~~~el~dia~v~  275 (398)
T KOG1436         247 LPLGKKP-PVLVKIAPDLSEKELKDIALVV  275 (398)
T ss_pred             CCCCCCC-CEEEEECCCHHHHHHHHHHHHH
T ss_conf             4568898-6588856524277898999999


No 380
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289   Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis .   This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=23.20  E-value=55  Score=13.80  Aligned_cols=159  Identities=13%  Similarity=0.236  Sum_probs=77.7

Q ss_pred             HHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             7787642102453201---11147999999996124677652--467753013722289999999999999977777549
Q gi|254780812|r  125 QSISILRKKLPNHITL---IGFCGAPWTVASYMISGGFIKDH--GQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG  199 (346)
Q Consensus       125 eAi~~~k~~l~~~~pL---IGF~GgP~TlasYmieG~~sk~~--~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG  199 (346)
                      +-+++.+.. ++-+++   +|-+||             .-|.  ...+.=.+.+|+++.++.+              +.|
T Consensus       126 kvve~Ah~~-GDYvSVEaElG~~gG-------------~ED~i~V~~~~~~ladp~Ea~~fV~--------------eT~  177 (339)
T TIGR01859       126 KVVEIAHAK-GDYVSVEAELGTIGG-------------IEDGIVVVEKEGELADPDEAEQFVK--------------ETG  177 (339)
T ss_pred             HHHHHHHHC-CCEEEEEEEECEECC-------------EECCEEEEECCCEECCHHHHHHHHH--------------HCC
T ss_conf             999999851-997999998430352-------------7627378715636758799999997--------------638


Q ss_pred             CCEEEEC-CCCHH--HCCHHH----------HHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC--CCCHHHHHC------
Q ss_conf             8167843-83110--068356----------77761272268999986308862360243110--000134201------
Q gi|254780812|r  200 VDVIQIF-DTHAG--CLGEHE----------FENYAARSVGRIISAVRRKYPNAKFISFAKGA--GYMLKNYRR------  258 (346)
Q Consensus       200 ad~iqIF-Ds~ag--~Ls~~~----------f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~--~~~l~~~~~------  258 (346)
                      +|.+.+. =|.-|  --..++          +...=.    +.+++|++..+|.|+..|..-.  ......+.+      
T Consensus       178 ~D~LA~aIGt~HGa~kykgeqCtrnaDGvLiWp~LdF----~~l~~I~~~~~G~PLVLHGaS~VP~e~v~~~~~~GG~L~  253 (339)
T TIGR01859       178 VDYLAAAIGTSHGAFKYKGEQCTRNADGVLIWPGLDF----ERLKEIKELTNGIPLVLHGASSVPAEIVKEVEEYGGELK  253 (339)
T ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCH----HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf             7754010035023578886653304672354888897----899999875089766735765685889999998187677


Q ss_pred             --------------CCCCCEEECCCCCCHHHH---HHHCC-----CE--EEECCCCHHHHCCC-HHHHHHHHHHHHH-HH
Q ss_conf             --------------478722304677998999---97079-----84--69688884677099-8899999999999-73
Q gi|254780812|r  259 --------------LTDSNAIGLDWSVPLSFA---LELQK-----EG--PVQGNLDPMRLVVG-NQVMIDGVNAILD-VL  312 (346)
Q Consensus       259 --------------~~g~d~isiD~~~dl~~a---~~~~~-----~~--~lqGNldP~~L~~~-~e~i~~~~~~~l~-~~  312 (346)
                                    ..|..=|.+|..+-+.++   |+...     +.  .=+.-+||.-+|++ .+.|++-++.=++ .+
T Consensus       254 ds~GIP~e~ikkAi~lGiaKiNidTe~riAf~~~~R~~l~dy~a~dl~l~k~~~yDPRK~L~p~~~a~k~~v~~K~~e~f  333 (339)
T TIGR01859       254 DSKGIPEEQIKKAIKLGIAKINIDTECRIAFTAAIRKVLEDYEAKDLELEKKDEYDPRKILGPAREAIKETVKEKMREVF  333 (339)
T ss_pred             CCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             77768678999999729141765816789999999999841143554025887446633353168999999998624540


Q ss_pred             CCC
Q ss_conf             259
Q gi|254780812|r  313 GSG  315 (346)
Q Consensus       313 ~~~  315 (346)
                      ++.
T Consensus       334 GS~  336 (339)
T TIGR01859       334 GSA  336 (339)
T ss_pred             CCC
T ss_conf             557


No 381
>pfam11823 DUF3343 Protein of unknown function (DUF3343). This family of proteins are functionally uncharacterized. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=23.12  E-value=55  Score=13.79  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=18.2

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             960897633668899999999997306
Q gi|254780812|r  319 FNLGHGITPQVDPKNVLDLVKTVRSEK  345 (346)
Q Consensus       319 ~nLGhGi~p~tp~eNv~~~v~~vr~~~  345 (346)
                      .+.|||+.-..+.++...+.+..++.+
T Consensus        37 is~~CGlai~~~~~~~e~i~~~l~~~~   63 (73)
T pfam11823        37 ISSGCGLAIKFDLEDLEAIKKILEENG   63 (73)
T ss_pred             HCCCCCEEEEECHHHHHHHHHHHHHCC
T ss_conf             547996399978888999999999879


No 382
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins.  DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.  This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=23.01  E-value=55  Score=13.77  Aligned_cols=22  Identities=23%  Similarity=0.218  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHCCCCEEEECCCC
Q ss_conf             9999777775498167843831
Q gi|254780812|r  188 SAEYLIAQIHAGVDVIQIFDTH  209 (346)
Q Consensus       188 ~~~yl~~Qi~aGad~iqIFDs~  209 (346)
                      +.+.+++-.++|||+|.++.+.
T Consensus       177 i~~ia~aa~~~GAdgi~liNT~  198 (325)
T cd04739         177 LAHMAKQLDAAGADGLVLFNRF  198 (325)
T ss_pred             HHHHHHHHHHCCCCEEEEECCC
T ss_conf             9999999997599889973576


No 383
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=23.00  E-value=55  Score=13.77  Aligned_cols=10  Identities=30%  Similarity=0.644  Sum_probs=4.9

Q ss_pred             HHCCCEEEEC
Q ss_conf             3244337316
Q gi|254780812|r   83 ALGRNVRFVE   92 (346)
Q Consensus        83 alG~~v~f~~   92 (346)
                      .+|.++....
T Consensus        15 ~~g~ki~l~~   24 (186)
T cd02904          15 FLGQKLSLVQ   24 (186)
T ss_pred             CCCCEEEEEE
T ss_conf             0598899997


No 384
>pfam08824 Serine_rich Serine rich protein interaction domain. This is a serine rich domain that is found in the docking protein p130(cas) (Crk-associated substrate). This domain folds into a four helix bundle which is associated with protein-protein interactions.
Probab=22.92  E-value=55  Score=13.76  Aligned_cols=70  Identities=17%  Similarity=0.294  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             87778764210245320-11114799999999612467765246775301372228999999999999997777754981
Q gi|254780812|r  123 IFQSISILRKKLPNHIT-LIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVD  201 (346)
Q Consensus       123 v~eAi~~~k~~l~~~~p-LIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad  201 (346)
                      -.|.+..+.+++...|+ |.+||++.|-.-.||                -.+=..++...+.+...+.+|+..--.+.++
T Consensus         6 A~E~L~rLQ~~v~ssVs~Ll~fvs~~WR~~~~l----------------e~~i~~Ir~a~~~v~~sl~efleFa~G~~~N   69 (159)
T pfam08824         6 ALETLARLQQKVESSVSSLMSFVSPNWRTREHL----------------EANINDIRRAVDRVEESLREFLEFARGAVGN   69 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999998865787888988----------------8779999999999999999999987250210


Q ss_pred             EEEECCC
Q ss_conf             6784383
Q gi|254780812|r  202 VIQIFDT  208 (346)
Q Consensus       202 ~iqIFDs  208 (346)
                      +.+.-|+
T Consensus        70 A~~l~D~   76 (159)
T pfam08824        70 ATQLTDR   76 (159)
T ss_pred             HCCCCCH
T ss_conf             1117857


No 385
>TIGR01488 HAD-SF-IB HAD-superfamily hydrolase, subfamily IB (PSPase-like); InterPro: IPR006383   This group represents a subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. ; GO: 0016791 phosphoric monoester hydrolase activity, 0008152 metabolic process.
Probab=22.82  E-value=56  Score=13.75  Aligned_cols=72  Identities=11%  Similarity=0.189  Sum_probs=45.6

Q ss_pred             CCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCE-EECCCCCCHHHHH-HHCCCE-EEECCC
Q ss_conf             6835677761272268999986308862360243110000134201478722-3046779989999-707984-696888
Q gi|254780812|r  213 LGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNA-IGLDWSVPLSFAL-ELQKEG-PVQGNL  289 (346)
Q Consensus       213 Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~-isiD~~~dl~~a~-~~~~~~-~lqGNl  289 (346)
                      +...--..+..|+.+..++.+|++  |..++..++|....+..+.+..|++. ++     ++-..+ ....+. .+.|+.
T Consensus        80 ~~~~~~~~r~~~~~~~~~~~~~~~--G~~~~ivSgg~~~~~~~~~e~~g~~~~F~-----~~~~~~~~~~~~G~~~~g~~  152 (204)
T TIGR01488        80 LAKEVAIDRLYPGARELIKWLKEK--GIKTVIVSGGLDFLVEPLAEKLGVDEVFK-----EVYANELEFDDNGVLLTGRI  152 (204)
T ss_pred             HHHHCCHHHCCHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHHHHCCHHHHHH-----HHHHHEEEEECCCEEECCCC
T ss_conf             864110132253089999999847--99299980886799999997528434432-----22320004542870543654


Q ss_pred             CH
Q ss_conf             84
Q gi|254780812|r  290 DP  291 (346)
Q Consensus       290 dP  291 (346)
                      +-
T Consensus       153 ~~  154 (204)
T TIGR01488       153 EG  154 (204)
T ss_pred             CC
T ss_conf             44


No 386
>pfam02126 PTE Phosphotriesterase family.
Probab=22.68  E-value=56  Score=13.73  Aligned_cols=127  Identities=19%  Similarity=0.144  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHH---HHHCCCCEEECCCC-CCC--CCHHHH
Q ss_conf             999999999777775498167843831100683567776127226899998---63088623602431-100--001342
Q gi|254780812|r  183 FLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAV---RRKYPNAKFISFAK-GAG--YMLKNY  256 (346)
Q Consensus       183 ~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~i---k~~~~~vpiI~f~~-g~~--~~l~~~  256 (346)
                      ...+-+.+.+..+|+.|+|.--|   -||+|..---..-.-|.-+|++++.   +.. .++||..++. +..  .-..++
T Consensus       100 ~s~e~la~~~i~ei~~Gi~~T~i---kaG~Ik~~~~~~~it~~E~k~lrAaA~A~~~-TG~pI~~H~~~~~~~~~e~l~i  175 (308)
T pfam02126       100 RSVEELTDVFVREIEHGIDGTGI---KAGIIGEIGTSWKLTPSEEKVLEAAAHAHAQ-TGCPVSTHTGASPRAGLQQIRI  175 (308)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCC---CCEEEEEECCCCCCCHHHHHHHHHHHHHHHH-HCCCEEECCCCCCCCHHHHHHH
T ss_conf             69999999999999843668874---5207888305899987899999999999997-6993797079875551999999


Q ss_pred             HCCCCCC-----EEECCCCCCHHHHHHHCCCEEEE-----C------CCCHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             0147872-----23046779989999707984696-----8------88846770998899999999999732
Q gi|254780812|r  257 RRLTDSN-----AIGLDWSVPLSFALELQKEGPVQ-----G------NLDPMRLVVGNQVMIDGVNAILDVLG  313 (346)
Q Consensus       257 ~~~~g~d-----~isiD~~~dl~~a~~~~~~~~lq-----G------NldP~~L~~~~e~i~~~~~~~l~~~~  313 (346)
                      ....|+|     .-++|-..|+...+++....+..     |      ++.|..=+.+.++-.+.+..+++.+.
T Consensus       176 l~e~Gvd~~rvvigH~D~~~D~~y~~~la~~G~~l~fD~~G~~~~~~~~~~~~~~~~d~~r~~~i~~Li~~Gy  248 (308)
T pfam02126       176 LQEEGVDLSRVVIGHCDDIDDLKYLLELAALGCYLGYDLFGTELLGYQLSPDIDIPPDQKRIRRVHALVDRGY  248 (308)
T ss_pred             HHHCCCCHHHEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             9985989446788526888998999999974978985356621233444555689998999999999997798


No 387
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504   RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ).   RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=22.57  E-value=56  Score=13.72  Aligned_cols=45  Identities=22%  Similarity=0.307  Sum_probs=27.0

Q ss_pred             CCHHHHHHHHHHHHHHHCCCC-CEEEECCCCCCCC---CHHHHHHHHHHH
Q ss_conf             998899999999999732599-2896089763366---889999999999
Q gi|254780812|r  296 VGNQVMIDGVNAILDVLGSGP-FIFNLGHGITPQV---DPKNVLDLVKTV  341 (346)
Q Consensus       296 ~~~e~i~~~~~~~l~~~~~~~-~I~nLGhGi~p~t---p~eNv~~~v~~v  341 (346)
                      ||-.+|++-|-.+.+-++.+. =||=.|| |+++=   =|.-++|+||+|
T Consensus       218 GSVsQVRE~t~~Lmr~AKt~~iaifiVGH-VTKeGsiAGPkvLEH~vD~v  266 (481)
T TIGR00416       218 GSVSQVRECTAELMRLAKTRGIAIFIVGH-VTKEGSIAGPKVLEHMVDTV  266 (481)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCHHHHHHHHHH
T ss_conf             84238889999998765216865799700-43567543404666343311


No 388
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=22.48  E-value=56  Score=13.70  Aligned_cols=16  Identities=19%  Similarity=0.652  Sum_probs=8.4

Q ss_pred             HHHHHHHCCCCCCCCC
Q ss_conf             7999996699899997
Q gi|254780812|r    6 QKILEVLQGNVINPPP   21 (346)
Q Consensus         6 ~~~l~al~g~~~~r~P   21 (346)
                      ..+...+.|+.+...|
T Consensus         6 ~~~~~~~~~~~~~~~~   21 (451)
T COG0770           6 DELADILGGALVGADP   21 (451)
T ss_pred             HHHHHHHCCCCCCCCC
T ss_conf             9999971781136740


No 389
>pfam03608 EII-GUT PTS system enzyme II sorbitol-specific factor.
Probab=22.43  E-value=46  Score=14.30  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=13.9

Q ss_pred             HHHHHHHCCCCCCCCCC-----HHHHH------CCCCCHHHH
Q ss_conf             79999966998999976-----14623------123457999
Q gi|254780812|r    6 QKILEVLQGNVINPPPI-----WLMRQ------AGRYLPEYR   36 (346)
Q Consensus         6 ~~~l~al~g~~~~r~PV-----W~MrQ------AGrylpey~   36 (346)
                      +++-+.+-+.+.-|--|     |||=-      -||++||+.
T Consensus        51 ~~~a~~~~~n~i~RY~vLP~l~~F~l~NPMa~t~GrFlpEk~   92 (168)
T pfam03608        51 EKLARKAGKNPFTRYLVLPVLSVFFLTNPMAYTLGRFLPEKY   92 (168)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHC
T ss_conf             999999735860478899999999924815877751570210


No 390
>TIGR00336 pyrE orotate phosphoribosyltransferase; InterPro: IPR004467 Orotate phosphoribosyl transferase (OPRTase) is involved in the biosynthesis of pyrimidine nucleotides. Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and orotate are utilised to form pyrophosphate and orotidine 5 -monophosphate (OMP) in the presence of divalent cations, preferably Mg2+. In a number of eukaryotes, this protein is fused to a domain that catalyses the reaction (4.1.1.23 from EC). The combined activity of 2.4.2.10 from EC and 4.1.1.23 from EC is termed uridine 5 -monophosphate synthase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.; GO: 0004588 orotate phosphoribosyltransferase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=22.36  E-value=37  Score=14.98  Aligned_cols=52  Identities=23%  Similarity=0.282  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEECCCC
Q ss_conf             79999999961246776524677530137222899999999999999777775498-167843831
Q gi|254780812|r  145 GAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGV-DVIQIFDTH  209 (346)
Q Consensus       145 GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGa-d~iqIFDs~  209 (346)
                      |-||||+|    |+.|.=|...+. ....|+        +.+.+..|+.++++.+. +.-.||=+.
T Consensus        14 G~PF~L~S----G~~S~yy~d~kl-~~t~~~--------~~~~~~~~~~~~~~~~lPe~d~iaG~a   66 (187)
T TIGR00336        14 GEPFILSS----GRKSPYYFDIKL-ANTGPE--------LANLIAEYIAAIIKDHLPEFDVIAGPA   66 (187)
T ss_pred             CCCCEECC----CCCCCEEEEEEE-ECCHHH--------HHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             59634168----860553782123-016689--------999999999998641289524664242


No 391
>KOG1517 consensus
Probab=22.10  E-value=57  Score=13.65  Aligned_cols=16  Identities=13%  Similarity=0.407  Sum_probs=9.4

Q ss_pred             HHHHHHHCCCCCCCCC
Q ss_conf             7999996699899997
Q gi|254780812|r    6 QKILEVLQGNVINPPP   21 (346)
Q Consensus         6 ~~~l~al~g~~~~r~P   21 (346)
                      +|++|..+..+|..|+
T Consensus       392 eRIMrs~nC~PVS~P~  407 (1387)
T KOG1517         392 ERIMRSYNCTPVSSPE  407 (1387)
T ss_pred             HHHHHHCCCCCCCCCC
T ss_conf             9887642787477889


No 392
>PRK05007 PII uridylyl-transferase; Provisional
Probab=22.10  E-value=43  Score=14.52  Aligned_cols=58  Identities=19%  Similarity=0.309  Sum_probs=30.0

Q ss_pred             HHHHHHHCCCCCCCCCCH-HHHHC---CCCCHHHHHHHHHCCCHHHHHC--CHHHHHHHHHHHHHHC
Q ss_conf             799999669989999761-46231---2345799999761553899842--7999999872128762
Q gi|254780812|r    6 QKILEVLQGNVINPPPIW-LMRQA---GRYLPEYRQIRKKFKNFLDMCY--TPEYTVELTLQPIRRY   66 (346)
Q Consensus         6 ~~~l~al~g~~~~r~PVW-~MrQA---Grylpey~~~r~~~~~f~~~~~--~pela~evtl~p~~r~   66 (346)
                      ++|+.-++... .-.++| .|.+.   |||+||+.++...++  +|+.|  |++-=+=-++.-+++|
T Consensus       410 ~~F~~iL~~p~-~~~~~L~~M~~~GvL~~ylPef~~I~g~mQ--fDlfH~YTVDeHTl~~i~~l~~~  473 (881)
T PRK05007        410 KLFMEILRHPG-AVSRALSPMHRHSVLSAYLPQWSHIVGQMQ--FDLFHAYTVDEHTIRVLLKIESF  473 (881)
T ss_pred             HHHHHHHHCCC-CHHHHHHHHHHCCCHHHHCCHHHHHHCCCC--CCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999981888-579999999872889886624777506635--57762354008899999999998


No 393
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012691    This entry represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see IPR012689 from INTERPRO). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the members of this family are found in the operon for 4-hydroxyphenylacetic acid catabolism.; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process, 0005737 cytoplasm.
Probab=22.03  E-value=57  Score=13.64  Aligned_cols=170  Identities=13%  Similarity=0.153  Sum_probs=84.9

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             77876421024532011114799999999612467765246775301372228999999999999997777754981678
Q gi|254780812|r  125 QSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQ  204 (346)
Q Consensus       125 eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iq  204 (346)
                      ++++..-+++.+.+|+|     |         |-|+.++..++.                   +..++   -|+|||+-|
T Consensus        57 ~~~E~~~~~~~GR~P~~-----P---------GTG~~~~~ETl~-------------------~T~~A---~E~GA~~AM  100 (294)
T TIGR02313        57 RVIEVVLDTVAGRVPVI-----P---------GTGALRLDETLE-------------------LTKKA---KEAGADAAM  100 (294)
T ss_pred             HHHHHHHHHHCCCCCCC-----C---------CCCCCCHHHHHH-------------------HHHHH---HHCCCCCCE
T ss_conf             99999997616841223-----7---------887654035788-------------------88888---850677215


Q ss_pred             ECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC--CCCCCCCH--H---HHHCCCCCCEEECCCC-CCHHHH
Q ss_conf             43831100683567776127226899998630886236024--31100001--3---4201478722304677-998999
Q gi|254780812|r  205 IFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF--AKGAGYML--K---NYRRLTDSNAIGLDWS-VPLSFA  276 (346)
Q Consensus       205 IFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f--~~g~~~~l--~---~~~~~~g~d~isiD~~-~dl~~a  276 (346)
                      +.=+.=  .-|.|  |=.+.|.+++.++    -|++|+|.|  ++-++..+  +   .+.+.+ .+++++-++ -|+++.
T Consensus       101 VIVPYY--~KPNQ--E~LY~~F~~VA~~----VPD~P~~IYNIPGR~~~~~~~KT~~RL~~D~-PNIVG~K~S~KDlE~~  171 (294)
T TIGR02313       101 VIVPYY--VKPNQ--EALYDYFKEVADA----VPDIPLLIYNIPGRAAVEIEVKTVARLVKDF-PNIVGLKESSKDLEYL  171 (294)
T ss_pred             EEECCC--CCCCH--HHHHHHHHHHHHH----CCCCCEEEECCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCHHHHHH
T ss_conf             774477--79875--6789999999752----3897578852888543411214555554217-7511155542028899


Q ss_pred             HH----HCCCEEEECCCC----HHHHCCCHHH-------HHHHHHHHHHHHC--C---C---C-CEEEECCCCCCCCCHH
Q ss_conf             97----079846968888----4677099889-------9999999999732--5---9---9-2896089763366889
Q gi|254780812|r  277 LE----LQKEGPVQGNLD----PMRLVVGNQV-------MIDGVNAILDVLG--S---G---P-FIFNLGHGITPQVDPK  332 (346)
Q Consensus       277 ~~----~~~~~~lqGNld----P~~L~~~~e~-------i~~~~~~~l~~~~--~---~---~-~I~nLGhGi~p~tp~e  332 (346)
                      .+    .|.|.-+--.+.    |.+=+|.--.       .=++|-.+.++..  |   .   - +.+|+.--|-.+|.|-
T Consensus       172 ~~~lL~~GRDFL~F~G~E~L~~PMl~~G~~G~I~ATAN~~PK~VA~l~~~~~~GD~~~A~~LHF~Ll~~N~~~F~DTNP~  251 (294)
T TIGR02313       172 SRLLLEAGRDFLLFSGLELLTLPMLALGAVGSIAATANVLPKKVALLHEKALEGDIKRARDLHFELLELNDVLFKDTNPI  251 (294)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99998617346566317888667887312123555405770679999988751653468899999987546654068993


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780812|r  333 NVLDLVK  339 (346)
Q Consensus       333 Nv~~~v~  339 (346)
                      =|++...
T Consensus       252 P~K~~L~  258 (294)
T TIGR02313       252 PLKAVLS  258 (294)
T ss_pred             HHHHHHH
T ss_conf             0899875


No 394
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases; InterPro: IPR005958   This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate.  L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway are included in this family. ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding, 0006519 amino acid and derivative metabolic process.
Probab=21.96  E-value=58  Score=13.63  Aligned_cols=33  Identities=27%  Similarity=0.184  Sum_probs=26.5

Q ss_pred             CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             7984696888846770998899999999999732
Q gi|254780812|r  280 QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLG  313 (346)
Q Consensus       280 ~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~  313 (346)
                      ++...+||-| |.+|..++++.-+.+.++|+.-.
T Consensus       299 gP~Ti~QgAL-P~IL~~Tp~efF~~~~~~lk~na  331 (424)
T TIGR01265       299 GPATIVQGAL-PDILENTPQEFFDKKISVLKENA  331 (424)
T ss_pred             CCHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             8157899999-99985168768899999988518


No 395
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=21.65  E-value=58  Score=13.59  Aligned_cols=69  Identities=16%  Similarity=0.172  Sum_probs=36.3

Q ss_pred             HCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCC------
Q ss_conf             54981678438311006835677761272268999986308862360243110000134201478722304677------
Q gi|254780812|r  197 HAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWS------  270 (346)
Q Consensus       197 ~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~------  270 (346)
                      .+|||+|-+   -+..|++++..+|.        +..++.+-.+-+  =+.+-.. ++.-.+ .|++.|++.++      
T Consensus       131 ~~GADaiLL---I~~~L~~~~l~~l~--------~~a~~lgl~~Lv--Evh~~~E-l~~a~~-~~a~iIGINnRnL~t~~  195 (261)
T PRK00278        131 AAGADAILL---IVAALDDEQLKELL--------DLAHELGLDVLV--EVHDEEE-LERALK-LGAPLIGINNRNLKTFE  195 (261)
T ss_pred             HCCCCCHHH---HHHHCCHHHHHHHH--------HHHHHHCCEEEE--EECCHHH-HHHHHH-CCCCEEEEECCCCHHCE
T ss_conf             818985789---88755899999999--------999982990797--7689999-999984-79988987467711200


Q ss_pred             CCHHHHHHHC
Q ss_conf             9989999707
Q gi|254780812|r  271 VPLSFALELQ  280 (346)
Q Consensus       271 ~dl~~a~~~~  280 (346)
                      +|+....++.
T Consensus       196 vd~~~~~~L~  205 (261)
T PRK00278        196 VDLDTTERLA  205 (261)
T ss_pred             ECHHHHHHHH
T ss_conf             3789999999


No 396
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=21.43  E-value=59  Score=13.56  Aligned_cols=136  Identities=18%  Similarity=0.214  Sum_probs=64.0

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             7778764210245320111147-999999996124677652467753013722289999999999999977777549816
Q gi|254780812|r  124 FQSISILRKKLPNHITLIGFCG-APWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDV  202 (346)
Q Consensus       124 ~eAi~~~k~~l~~~~pLIGF~G-gP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~  202 (346)
                      .+.|+.+.++   .+|+.|-+| -|=+.-.+   | |   |..    -=++.+...+|++        -+++.-+|||-+
T Consensus       122 ~~~i~~l~~~---GIPV~gHiGL~PQ~~~~~---G-G---~r~----qGkt~~ea~~l~~--------dA~~le~AGaf~  179 (266)
T PRK00311        122 AETIRRLVER---GIPVMGHLGLTPQSVNVL---G-G---YKV----QGRDEEAAEQLLE--------DAKALEEAGAFA  179 (266)
T ss_pred             HHHHHHHHHC---CCCEEEEECCCCCCCCCC---C-C---CCC----CCCCHHHHHHHHH--------HHHHHHHCCCEE
T ss_conf             7999999987---997665415765001136---8-8---602----2599999999999--------999998479549


Q ss_pred             EEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCC
Q ss_conf             78438311006835677761272268999986308862360243110000134201478722304677998999970798
Q gi|254780812|r  203 IQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKE  282 (346)
Q Consensus       203 iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~  282 (346)
                      | +.+-    ++.            ++.+.+.+.. .+|+|.+.-|....-. +  +.-.|.+++......+++|...  
T Consensus       180 i-vlE~----Vp~------------~la~~It~~l-~IPtIGIGAG~~cDGQ-v--LV~~DlLG~~~~~~PkFvk~y~--  236 (266)
T PRK00311        180 L-VLEC----VPA------------ELAKEITEAL-SIPTIGIGAGPDCDGQ-V--LVMHDMLGLFSGFKPKFVKRYA--  236 (266)
T ss_pred             E-EEEC----CCH------------HHHHHHHHCC-CCCEEEECCCCCCCEE-E--EEHHHHCCCCCCCCCCHHHHHH--
T ss_conf             9-9955----869------------9999999648-9988970558998568-8--8663433899898995899987--


Q ss_pred             EEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             46968888467709988999999999997325992
Q gi|254780812|r  283 GPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPF  317 (346)
Q Consensus       283 ~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~  317 (346)
                           |        -.+.+.+.++++.+..+++.|
T Consensus       237 -----~--------~~~~~~~A~~~y~~dVk~g~F  258 (266)
T PRK00311        237 -----D--------LGGSIREAVKAYAAEVKSGSF  258 (266)
T ss_pred             -----H--------HHHHHHHHHHHHHHHHHCCCC
T ss_conf             -----2--------799999999999999966999


No 397
>PRK05872 short chain dehydrogenase; Provisional
Probab=21.42  E-value=51  Score=13.99  Aligned_cols=44  Identities=20%  Similarity=0.116  Sum_probs=22.8

Q ss_pred             HCCCHHHHHHHHHHHHH----HHHHHHHHHHHCCCCEEEECCCCHHHCC
Q ss_conf             01372228999999999----9999977777549816784383110068
Q gi|254780812|r  170 AYQNSRAFNWLLDFLSD----VSAEYLIAQIHAGVDVIQIFDTHAGCLG  214 (346)
Q Consensus       170 ~~~~p~~~~~ll~~lt~----~~~~yl~~Qi~aGad~iqIFDs~ag~Ls  214 (346)
                      ...+++.|+++++.-..    .+...+..+++.|-.+|.| -|.++..+
T Consensus       100 ~~~~~e~~~~v~dVNl~G~~~~~ra~lp~m~~~~G~IVni-sS~ag~~~  147 (296)
T PRK05872        100 LQVDPAAFRRVIDVNLLGVFHTVRATLPAVIERRGYVLQV-SSLAAFAA  147 (296)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-ECHHHHCC
T ss_conf             2199899725842445999999999999999779989999-60543245


No 398
>PRK09354 recA recombinase A; Provisional
Probab=21.40  E-value=59  Score=13.56  Aligned_cols=69  Identities=12%  Similarity=0.203  Sum_probs=41.3

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHH------------HHHCCCHHHHHHHH
Q ss_conf             775301372228999999999999997777754981678438311006835677------------76127226899998
Q gi|254780812|r  166 NRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFE------------NYAARSVGRIISAV  233 (346)
Q Consensus       166 ~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~------------~f~~p~~kkI~~~i  233 (346)
                      ..++++..|+..++.++.+...        +++|+--+-|+||-|.+.+..+.+            +..-..++++...+
T Consensus       112 ~d~llv~qpd~~Eqal~i~e~L--------vrsg~vd~IVvDSVaAL~pk~Eieg~mgd~~vG~qARlmSqalRKlt~~i  183 (350)
T PRK09354        112 IDNLLVSQPDTGEQALEIADAL--------VRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI  183 (350)
T ss_pred             HHHEEEECCCHHHHHHHHHHHH--------HHCCCCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             1571785686799999999999--------85488418998253345768887313354226389999999999999998


Q ss_pred             HHHCCCCEEEC
Q ss_conf             63088623602
Q gi|254780812|r  234 RRKYPNAKFIS  244 (346)
Q Consensus       234 k~~~~~vpiI~  244 (346)
                      .+.  ++.+|.
T Consensus       184 ~ks--~t~~If  192 (350)
T PRK09354        184 NKS--NTTVIF  192 (350)
T ss_pred             HCC--CCEEEE
T ss_conf             557--828999


No 399
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=21.28  E-value=47  Score=14.23  Aligned_cols=17  Identities=6%  Similarity=0.278  Sum_probs=8.3

Q ss_pred             CHHHHHHHHHHHCCCCEEE
Q ss_conf             2268999986308862360
Q gi|254780812|r  225 SVGRIISAVRRKYPNAKFI  243 (346)
Q Consensus       225 ~~kkI~~~ik~~~~~vpiI  243 (346)
                      ...++++..|+.  ++|++
T Consensus       188 ca~~L~~~AK~~--~i~~~  204 (372)
T cd01121         188 CTAELMRFAKER--NIPIF  204 (372)
T ss_pred             HHHHHHHHHHHC--CCEEE
T ss_conf             999999999861--97399


No 400
>pfam06408 consensus
Probab=21.21  E-value=60  Score=13.53  Aligned_cols=18  Identities=22%  Similarity=0.237  Sum_probs=11.0

Q ss_pred             HHHHHHHHCCCCEEEECC
Q ss_conf             997777754981678438
Q gi|254780812|r  190 EYLIAQIHAGVDVIQIFD  207 (346)
Q Consensus       190 ~yl~~Qi~aGad~iqIFD  207 (346)
                      +|.+..-..|+.+|.|.+
T Consensus       187 ~wa~LA~~LgVkvIHiaE  204 (471)
T pfam06408       187 GWAKLAKKLGVKGIHIAE  204 (471)
T ss_pred             HHHHHHHHHCCCEEEECC
T ss_conf             899999982995899514


No 401
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; InterPro: IPR010125   This entry represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (IPR010123 from INTERPRO) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerise short-chain-length hydroxyalkanoates.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process.
Probab=21.17  E-value=60  Score=13.53  Aligned_cols=59  Identities=19%  Similarity=0.335  Sum_probs=32.2

Q ss_pred             HHCCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHH-HHHHHHH
Q ss_conf             3244337316887522233333554205670123443237877787642102-4532011114-7999999
Q gi|254780812|r   83 ALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKL-PNHITLIGFC-GAPWTVA  151 (346)
Q Consensus        83 alG~~v~f~~~~GP~~~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l-~~~~pLIGF~-GgP~Tla  151 (346)
                      .-|++|-..+=.-|.-      .+..+.. .|...+   |+.+|++.+++.- -+.+.|.|.| ||-|||.
T Consensus       101 ~~G~DVYLiDWGyP~~------~D~~ltL-dDY~~~---YI~~cV~~i~~~~~~d~i~lLG~CqGGTfsL~  161 (367)
T TIGR01836       101 ERGQDVYLIDWGYPDR------ADRYLTL-DDYVNG---YIDKCVDYICRTSKLDQISLLGICQGGTFSLC  161 (367)
T ss_pred             HCCCCEEEEECCCCCH------HHHCCCH-HHHHHH---HHHHHHHHHHHHCCCCCCCEEEEECCHHHHHH
T ss_conf             5698489960689873------3311404-666767---78999999986507896104314310478999


No 402
>KOG2700 consensus
Probab=21.16  E-value=60  Score=13.52  Aligned_cols=15  Identities=40%  Similarity=0.468  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             011114799999999
Q gi|254780812|r  139 TLIGFCGAPWTVASY  153 (346)
Q Consensus       139 pLIGF~GgP~TlasY  153 (346)
                      -+-|+-|+-=|.||+
T Consensus       191 ~~~~~kga~gtqasf  205 (481)
T KOG2700         191 RFRGLKGATGTQASF  205 (481)
T ss_pred             HCCCCCCCHHHHHHH
T ss_conf             015665213018888


No 403
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=21.08  E-value=60  Score=13.51  Aligned_cols=88  Identities=17%  Similarity=0.093  Sum_probs=39.1

Q ss_pred             CCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHH-H-HCCCEEE--ECCCCHHHHCCCH
Q ss_conf             2722689999863088623602431100001342014787223046779989999-7-0798469--6888846770998
Q gi|254780812|r  223 ARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFAL-E-LQKEGPV--QGNLDPMRLVVGN  298 (346)
Q Consensus       223 ~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~-~-~~~~~~l--qGNldP~~L~~~~  298 (346)
                      +...++++..+....-+.|+|++-.-....         .+-+-++...++.-.. . +++.+.+  ++.+       +.
T Consensus       432 l~~~RrLf~~L~~~gI~~PVIl~~~y~~~~---------~edllI~~~~~~G~ll~dg~gdgi~~~~~~~~-------~~  495 (613)
T PRK02048        432 VGEHRALAHQLMVEGLENPVIFFQHYAETD---------AEDLQLKAAADMGALIFDGLCDGIMLFNQGKL-------SH  495 (613)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCCC---------HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-------CH
T ss_conf             589999999999769998627874157774---------67788988876404654456655898368875-------27


Q ss_pred             HHHHHHHHHHHHHHCC----CCCEEEECCCCC
Q ss_conf             8999999999997325----992896089763
Q gi|254780812|r  299 QVMIDGVNAILDVLGS----GPFIFNLGHGIT  326 (346)
Q Consensus       299 e~i~~~~~~~l~~~~~----~~~I~nLGhGi~  326 (346)
                      +.+.+-.-.+|+..+-    .-||-..|||=+
T Consensus       496 ~~~~~l~f~iLQa~r~R~~kTeyIsCPsCGRT  527 (613)
T PRK02048        496 VVVDATAFGILQAGRIRTSKTEYISCPGCGRT  527 (613)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
T ss_conf             78888888888875744335627758987652


No 404
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=20.64  E-value=61  Score=13.45  Aligned_cols=89  Identities=12%  Similarity=0.090  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHCCC-CCCHHHHHHHH----HHHHHHHHHCCCC----------CCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             378777876421024-53201111479----9999999612467----------76524677530137222899999999
Q gi|254780812|r  121 LPIFQSISILRKKLP-NHITLIGFCGA----PWTVASYMISGGF----------IKDHGQNRVFAYQNSRAFNWLLDFLS  185 (346)
Q Consensus       121 ~~v~eAi~~~k~~l~-~~~pLIGF~Gg----P~TlasYmieG~~----------sk~~~~~~~~~~~~p~~~~~ll~~lt  185 (346)
                      ..+.+-++..+.+.+ ..++++...++    =|+-....++.-+          +-| .+...-+.++|+.++.|++.+.
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPn-t~g~~~l~~~~e~l~~l~~~vk  157 (310)
T COG0167          79 DAFLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPN-TPGGRALGQDPELLEKLLEAVK  157 (310)
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCCHHHHCCCHHHHHHHHHHHH
T ss_conf             999999886400147767634887578857889999999975077887999853899-9774665439999999999998


Q ss_pred             ---------------HHHHHHHHHHHHCCCCEEEECCCCH
Q ss_conf             ---------------9999997777754981678438311
Q gi|254780812|r  186 ---------------DVSAEYLIAQIHAGVDVIQIFDTHA  210 (346)
Q Consensus       186 ---------------~~~~~yl~~Qi~aGad~iqIFDs~a  210 (346)
                                     +-+.+-+++-.++|+|.|-.+-|.-
T Consensus       158 ~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~  197 (310)
T COG0167         158 AATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTK  197 (310)
T ss_pred             HCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             6356865999388889999999999974985899970036


No 405
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases).  Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=20.52  E-value=62  Score=13.43  Aligned_cols=42  Identities=14%  Similarity=-0.040  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH--HCCHHHHHHHHCC
Q ss_conf             99999999999977777549816784383110--0683567776127
Q gi|254780812|r  180 LLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG--CLGEHEFENYAAR  224 (346)
Q Consensus       180 ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag--~Ls~~~f~~f~~p  224 (346)
                      +|..+...+.+.+.   +.|+.-|.+--=.+|  -++++.--+.++.
T Consensus        96 ~L~~~~~~~L~~A~---~~~~~SIAfPaigtG~~g~p~~~aa~i~~~  139 (175)
T cd02907          96 KLKKAILNSLRKAE---ELGLRSIAIPAISSGIFGFPLERCVETIVE  139 (175)
T ss_pred             HHHHHHHHHHHHHH---HCCCCEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999999---859978997751345668898999999999


No 406
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.44  E-value=47  Score=14.27  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=15.1

Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             799999987212876298726521
Q gi|254780812|r   51 TPEYTVELTLQPIRRYNFDAAILF   74 (346)
Q Consensus        51 ~pela~evtl~p~~r~~~DaaIlF   74 (346)
                      +++.-.+ .+.-+...++|+.|+.
T Consensus        40 ~~~~e~~-~l~~l~~~~vdGiIi~   62 (269)
T cd06281          40 DPERELE-ILRSFEQRRMDGIIIA   62 (269)
T ss_pred             CHHHHHH-HHHHHHHCCCCEEEEC
T ss_conf             9899999-9999985799899976


No 407
>cd01218 PH_phafin2 Phafin2  Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain.  PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding.  Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.36  E-value=62  Score=13.41  Aligned_cols=12  Identities=50%  Similarity=0.797  Sum_probs=9.2

Q ss_pred             EEECCCCEECCH
Q ss_conf             652133200104
Q gi|254780812|r   71 AILFSDILVIAD   82 (346)
Q Consensus        71 aIlFsDIl~~~e   82 (346)
                      -.||||||+=..
T Consensus        23 FfLFnDiLvYg~   34 (104)
T cd01218          23 FFLFNDILVYGN   34 (104)
T ss_pred             EEEECEEEEECC
T ss_conf             997033899712


No 408
>PRK05092 PII uridylyl-transferase; Provisional
Probab=20.28  E-value=35  Score=15.15  Aligned_cols=46  Identities=24%  Similarity=0.478  Sum_probs=27.0

Q ss_pred             HHHHHHHHCCCCCCCCCCH-HHHHC---CCCCHHHHHHHHHCCCHHHHHC--CHH
Q ss_conf             5799999669989999761-46231---2345799999761553899842--799
Q gi|254780812|r    5 KQKILEVLQGNVINPPPIW-LMRQA---GRYLPEYRQIRKKFKNFLDMCY--TPE   53 (346)
Q Consensus         5 ~~~~l~al~g~~~~r~PVW-~MrQA---Grylpey~~~r~~~~~f~~~~~--~pe   53 (346)
                      ++.|+..|.....- .++| .|.++   |||+||+..++..++  +|+.|  |++
T Consensus       447 ~~~Fl~iL~~~~~~-~~~Lr~M~e~GvLg~~iPeF~~I~g~mQ--fD~yH~YTVD  498 (934)
T PRK05092        447 NRLFLDILTSRNNP-ERILRRMNEAGVLGRFIPDFGRIVAMMQ--FNMYHHYTVD  498 (934)
T ss_pred             HHHHHHHHCCCCCH-HHHHHHHHHCCCHHHHCCCHHHHEECCC--CCCHHCCCCC
T ss_conf             99999997289866-9999999983871320663253110324--5520127400


No 409
>KOG2023 consensus
Probab=20.25  E-value=42  Score=14.62  Aligned_cols=30  Identities=7%  Similarity=0.030  Sum_probs=18.7

Q ss_pred             CCCHHHCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             831100683567776127226899998630
Q gi|254780812|r  207 DTHAGCLGEHEFENYAARSVGRIISAVRRK  236 (346)
Q Consensus       207 Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~  236 (346)
                      ||-+..|+...|-+..+|++-+--+.+++.
T Consensus       546 dsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~  575 (885)
T KOG2023         546 DSVGHALNKPAYIQILMPPLIEKWELLSDS  575 (885)
T ss_pred             HHHHHHCCCHHHHHHHCCHHHHHHHHCCCC
T ss_conf             998875076788888454889998756756


No 410
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.22  E-value=48  Score=14.18  Aligned_cols=24  Identities=13%  Similarity=0.126  Sum_probs=15.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             7999999872128762987265213
Q gi|254780812|r   51 TPEYTVELTLQPIRRYNFDAAILFS   75 (346)
Q Consensus        51 ~pela~evtl~p~~r~~~DaaIlFs   75 (346)
                      +++.-.+ .++-+...++||.|+.+
T Consensus        40 ~~~~e~~-~i~~l~~~~vdgiIi~~   63 (270)
T cd06296          40 RTSPERQ-WVERLSARRTDGVILVT   63 (270)
T ss_pred             CHHHHHH-HHHHHHHCCCCEEEEEC
T ss_conf             9699999-99999954999999906


No 411
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=20.20  E-value=63  Score=13.39  Aligned_cols=11  Identities=45%  Similarity=0.697  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHC
Q ss_conf             99872128762
Q gi|254780812|r   56 VELTLQPIRRY   66 (346)
Q Consensus        56 ~evtl~p~~r~   66 (346)
                      .|.+|+-+++|
T Consensus       153 pE~SL~~L~~f  163 (404)
T TIGR03278       153 PEASLQCLRRF  163 (404)
T ss_pred             HHHHHHHHHHH
T ss_conf             68899999999


No 412
>COG4790 EscR Type III secretory pathway, component EscR [Intracellular trafficking and secretion]
Probab=20.11  E-value=56  Score=13.75  Aligned_cols=72  Identities=18%  Similarity=0.151  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHH
Q ss_conf             14799999999612467765246775301372228999999999999997777754981678438311006835677761
Q gi|254780812|r  143 FCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYA  222 (346)
Q Consensus       143 F~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~  222 (346)
                      |+.+|--++.|-        .......-+.+-+.+++..+...+--.+|++.+.+  ++-++-|...+-...|++|++-.
T Consensus        62 FvMaPv~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~pyR~fL~k~t~--~~~~~FF~~~~~~~wp~e~~~~l  131 (214)
T COG4790          62 FVMAPVGLQIYD--------RLQNEELSYTNIASVVKFDDKGLSPYRDFLKKNTE--EEEVSFFERSAQKKWPEEYAEKL  131 (214)
T ss_pred             HHHHHHHHHHHH--------HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHCCHHHHHCC
T ss_conf             998277899998--------62441347883899999998513478999997074--99999999999874878887305


Q ss_pred             CC
Q ss_conf             27
Q gi|254780812|r  223 AR  224 (346)
Q Consensus       223 ~p  224 (346)
                      .|
T Consensus       132 k~  133 (214)
T COG4790         132 KP  133 (214)
T ss_pred             CC
T ss_conf             87


No 413
>pfam03102 NeuB NeuB family. NeuB is the prokaryotic N-acetylneuraminic acid (Neu5Ac) synthase. It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesize the 9-phosphate form, Neu5Ac-9-P, and utilize ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.
Probab=20.08  E-value=63  Score=13.37  Aligned_cols=13  Identities=15%  Similarity=0.156  Sum_probs=6.4

Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             9988999999999
Q gi|254780812|r  296 VGNQVMIDGVNAI  308 (346)
Q Consensus       296 ~~~e~i~~~~~~~  308 (346)
                      .+++++++-|+.+
T Consensus       217 l~~~e~~~~v~~i  229 (240)
T pfam03102       217 LEPDELKELVKDI  229 (240)
T ss_pred             CCHHHHHHHHHHH
T ss_conf             9999999999999


Done!