Query gi|254780812|ref|YP_003065225.1| uroporphyrinogen decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 346
No_of_seqs 184 out of 2022
Neff 6.8
Searched_HMMs 39220
Date Sun May 29 20:39:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780812.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01464 hemE uroporphyrinoge 100.0 0 0 966.9 22.2 336 7-343 1-351 (351)
2 PRK00115 hemE uroporphyrinogen 100.0 0 0 892.6 30.7 343 1-345 1-346 (347)
3 cd00717 URO-D Uroporphyrinogen 100.0 0 0 869.6 28.6 332 9-343 1-335 (335)
4 COG0407 HemE Uroporphyrinogen- 100.0 0 0 789.7 28.6 342 3-345 5-349 (352)
5 KOG2872 consensus 100.0 0 0 796.2 19.3 341 3-345 10-357 (359)
6 pfam01208 URO-D Uroporphyrinog 100.0 0 0 667.4 29.6 334 3-344 1-337 (337)
7 cd03307 Mta_CmuA_like MtaA_Cmu 100.0 0 0 649.9 24.5 308 9-343 1-326 (326)
8 PRK06252 methylcobalamin:coenz 100.0 0 0 635.9 26.8 326 1-345 3-336 (339)
9 cd00465 URO-D_CIMS_like The UR 100.0 0 0 636.0 18.7 297 21-343 1-306 (306)
10 cd03465 URO-D_like The URO-D _ 100.0 0 0 588.2 25.9 318 10-343 2-330 (330)
11 TIGR01463 mtaA_cmuA methyltran 100.0 0 0 418.8 21.0 321 1-346 3-350 (350)
12 cd03308 CmuA_CmuC_like CmuA_Cm 100.0 2.7E-44 0 332.0 26.2 328 1-343 2-378 (378)
13 cd03309 CmuC_like CmuC_like. P 99.6 7.1E-14 1.8E-18 118.3 16.4 192 139-338 113-316 (321)
14 PRK00957 methionine synthase; 98.6 1.7E-06 4.3E-11 66.6 13.0 189 137-344 108-306 (307)
15 cd03311 CIMS_C_terminal_like C 98.6 2.2E-06 5.5E-11 65.8 11.8 190 138-340 119-329 (332)
16 cd03310 CIMS_like CIMS - Cobal 98.5 6.5E-06 1.7E-10 62.4 13.2 188 137-343 115-321 (321)
17 PRK09121 5-methyltetrahydropte 98.5 3.4E-06 8.5E-11 64.4 11.7 179 144-343 129-333 (339)
18 PRK04326 methionine synthase; 98.5 5.6E-06 1.4E-10 62.9 12.4 177 144-343 134-321 (330)
19 pfam01717 Meth_synt_2 Cobalami 98.5 5.4E-06 1.4E-10 63.0 12.1 187 137-342 120-323 (324)
20 PRK06520 5-methyltetrahydropte 98.2 9.7E-05 2.5E-09 54.2 12.8 209 123-343 118-366 (370)
21 PRK01207 methionine synthase; 98.0 0.0001 2.6E-09 54.1 10.4 187 137-345 118-340 (343)
22 PRK06233 hypothetical protein; 98.0 0.00024 6.2E-09 51.4 12.1 166 177-343 162-369 (372)
23 COG0620 MetE Methionine syntha 97.8 0.00076 1.9E-08 47.9 11.9 199 127-345 116-328 (330)
24 PRK08575 5-methyltetrahydropte 97.4 0.0026 6.8E-08 44.1 9.7 175 145-343 134-319 (320)
25 PRK05222 5-methyltetrahydropte 96.5 0.031 8E-07 36.6 8.7 30 180-209 176-205 (756)
26 cd03312 CIMS_N_terminal_like C 96.2 0.14 3.6E-06 32.0 14.1 166 137-326 150-324 (360)
27 TIGR01235 pyruv_carbox pyruvat 96.2 0.018 4.6E-07 38.3 6.3 150 153-306 590-834 (1169)
28 TIGR01371 met_syn_B12ind 5-met 96.2 0.08 2E-06 33.7 9.6 32 177-208 191-222 (778)
29 PRK13116 consensus 95.7 0.086 2.2E-06 33.5 8.0 62 119-220 77-138 (278)
30 TIGR02090 LEU1_arch isopropylm 95.7 0.022 5.7E-07 37.6 4.9 52 189-248 146-197 (371)
31 TIGR01371 met_syn_B12ind 5-met 95.6 0.26 6.6E-06 30.1 12.2 195 132-345 564-776 (778)
32 TIGR01108 oadA oxaloacetate de 95.5 0.05 1.3E-06 35.1 6.2 76 192-277 156-242 (616)
33 COG0159 TrpA Tryptophan syntha 95.1 0.28 7.2E-06 29.9 9.0 132 30-221 3-139 (265)
34 PRK12330 oxaloacetate decarbox 94.8 0.099 2.5E-06 33.1 5.9 68 188-265 157-229 (499)
35 PRK13117 consensus 94.7 0.23 5.8E-06 30.5 7.6 54 119-207 77-130 (268)
36 PRK13138 consensus 94.5 0.33 8.4E-06 29.4 8.1 21 120-141 74-94 (264)
37 COG5016 Pyruvate/oxaloacetate 94.3 0.33 8.4E-06 29.4 7.8 54 187-250 157-210 (472)
38 PRK12331 oxaloacetate decarbox 94.2 0.14 3.6E-06 32.0 5.7 71 186-267 154-228 (463)
39 PRK12581 oxaloacetate decarbox 93.9 0.18 4.5E-06 31.3 5.7 70 186-266 163-236 (468)
40 TIGR01854 lipid_A_lpxH UDP-2,3 93.9 0.043 1.1E-06 35.6 2.5 75 184-265 16-96 (241)
41 PRK07535 methyltetrahydrofolat 93.8 0.7 1.8E-05 27.1 9.8 35 205-242 158-192 (268)
42 pfam08267 Meth_synt_1 Cobalami 93.5 0.76 1.9E-05 26.8 10.8 163 120-310 137-307 (310)
43 PRK03170 dihydrodipicolinate s 93.5 0.76 1.9E-05 26.8 8.9 52 185-245 82-133 (292)
44 PRK13114 consensus 93.3 0.38 9.6E-06 29.0 6.5 63 119-221 73-135 (266)
45 pfam00290 Trp_syntA Tryptophan 93.3 0.84 2.1E-05 26.5 9.3 22 119-141 69-90 (258)
46 PRK05222 5-methyltetrahydropte 93.2 0.86 2.2E-05 26.5 13.9 189 133-344 542-750 (756)
47 PRK13119 consensus 92.9 0.94 2.4E-05 26.2 9.0 63 119-221 75-137 (261)
48 TIGR00078 nadC nicotinate-nucl 92.9 0.2 5.2E-06 30.9 4.6 64 192-270 199-263 (276)
49 PRK09282 pyruvate carboxylase 92.8 0.34 8.6E-06 29.3 5.7 70 186-265 155-227 (580)
50 PRK12999 pyruvate carboxylase; 92.3 0.66 1.7E-05 27.3 6.6 108 155-265 575-764 (1147)
51 PRK08195 4-hydroxy-2-ketovaler 92.2 0.5 1.3E-05 28.1 5.9 54 187-249 145-199 (337)
52 PRK13131 consensus 92.1 1.2 3E-05 25.5 9.7 21 120-141 71-91 (257)
53 KOG2263 consensus 92.0 0.89 2.3E-05 26.3 7.0 159 182-344 582-758 (765)
54 PRK13123 consensus 91.8 1.3 3.3E-05 25.3 10.2 17 191-207 109-125 (256)
55 PRK08645 bifunctional homocyst 91.8 1.3 3.3E-05 25.2 13.6 133 192-345 132-290 (608)
56 PRK13133 consensus 91.7 1.3 3.3E-05 25.2 8.5 104 60-221 35-141 (267)
57 TIGR03217 4OH_2_O_val_ald 4-hy 91.4 0.51 1.3E-05 28.1 5.2 53 188-249 145-198 (333)
58 PRK05692 hydroxymethylglutaryl 91.1 0.62 1.6E-05 27.4 5.5 52 189-249 158-209 (287)
59 PRK08318 dihydropyrimidine deh 91.0 1.3 3.2E-05 25.3 6.9 148 120-270 83-284 (413)
60 TIGR00693 thiE thiamine-phosph 90.9 1.6 4E-05 24.6 7.8 111 188-318 17-133 (210)
61 COG0796 MurI Glutamate racemas 90.8 0.91 2.3E-05 26.3 6.1 18 125-144 81-98 (269)
62 PRK13121 consensus 90.2 1.8 4.5E-05 24.2 9.3 63 119-221 77-139 (265)
63 PRK13120 consensus 90.0 1.9 4.7E-05 24.1 9.5 109 51-221 31-143 (285)
64 TIGR01235 pyruv_carbox pyruvat 89.9 0.95 2.4E-05 26.2 5.5 118 67-212 658-792 (1169)
65 PRK13118 consensus 89.8 1.9 4.9E-05 24.0 10.6 54 119-207 77-130 (269)
66 PRK00915 2-isopropylmalate syn 89.7 0.99 2.5E-05 26.0 5.5 54 186-248 149-205 (511)
67 PRK13112 consensus 89.5 2 5.1E-05 23.9 10.1 63 119-221 78-140 (279)
68 cd04724 Tryptophan_synthase_al 89.5 2 5.2E-05 23.9 9.6 21 119-141 60-80 (242)
69 TIGR02339 thermosome_arch ther 89.3 2.1 5.3E-05 23.8 7.0 123 169-312 252-389 (522)
70 PTZ00314 inosine-5'-monophosph 89.0 0.94 2.4E-05 26.2 4.9 67 187-265 238-304 (499)
71 PRK13113 consensus 89.0 2.2 5.6E-05 23.6 9.7 63 119-221 77-139 (263)
72 pfam00478 IMPDH IMP dehydrogen 88.8 1.1 2.7E-05 25.8 5.1 67 188-266 224-290 (467)
73 PRK05567 inositol-5'-monophosp 88.6 0.96 2.4E-05 26.1 4.8 70 186-267 227-296 (486)
74 TIGR01302 IMP_dehydrog inosine 88.0 1.7 4.4E-05 24.4 5.7 70 253-333 244-333 (476)
75 PRK12344 putative alpha-isopro 87.9 1.4 3.5E-05 25.1 5.1 48 192-248 164-211 (530)
76 KOG3253 consensus 87.7 1.9 4.9E-05 24.0 5.8 195 117-329 115-350 (784)
77 PRK06843 inositol-5-monophosph 87.5 1.3 3.3E-05 25.2 4.9 66 189-266 155-220 (404)
78 pfam01729 QRPTase_C Quinolinat 87.1 1.1 2.9E-05 25.7 4.3 61 195-270 96-157 (169)
79 PRK05848 nicotinate-nucleotide 87.1 0.83 2.1E-05 26.6 3.7 64 191-269 193-257 (272)
80 PRK07428 nicotinate-nucleotide 87.0 0.94 2.4E-05 26.2 3.9 11 260-270 212-222 (285)
81 TIGR00973 leuA_bact 2-isopropy 86.8 1.8 4.5E-05 24.3 5.2 54 186-248 151-207 (514)
82 PRK00865 glutamate racemase; P 86.8 2.8 7.2E-05 22.9 6.2 110 196-309 131-251 (262)
83 PRK09490 metH B12-dependent me 86.7 3 7.6E-05 22.7 12.0 25 181-205 380-404 (1229)
84 TIGR01769 GGGP geranylgeranylg 86.4 1.3 3.3E-05 25.2 4.4 55 192-258 19-73 (212)
85 PRK13111 trpA tryptophan synth 86.4 3.1 7.9E-05 22.6 8.9 21 119-141 69-89 (256)
86 CHL00200 trpA tryptophan synth 86.3 3.1 7.9E-05 22.6 9.7 93 60-207 35-127 (263)
87 PRK07807 inositol-5-monophosph 86.2 0.92 2.4E-05 26.2 3.5 66 188-265 228-293 (479)
88 PRK13127 consensus 86.0 3.2 8.2E-05 22.4 9.3 21 119-141 71-91 (262)
89 PRK09196 fructose-1,6-bisphosp 86.0 1.2 3.1E-05 25.4 4.0 125 168-316 169-327 (347)
90 PRK12857 putative aldolase; Re 85.7 1.3 3.4E-05 25.1 4.1 126 169-316 152-282 (284)
91 PRK13129 consensus 85.5 3.4 8.7E-05 22.3 8.8 21 119-141 79-99 (267)
92 PRK13124 consensus 85.4 3.4 8.7E-05 22.3 8.1 21 119-141 69-89 (257)
93 PRK08385 nicotinate-nucleotide 84.9 3 7.8E-05 22.6 5.7 17 82-98 55-71 (279)
94 PRK13136 consensus 84.8 3.6 9.3E-05 22.1 9.5 52 119-207 72-123 (253)
95 COG0763 LpxB Lipid A disacchar 83.9 4 0.0001 21.8 7.8 23 7-29 19-45 (381)
96 KOG0369 consensus 83.9 3.9 9.9E-05 21.9 5.8 144 146-292 588-822 (1176)
97 PRK07896 nicotinate-nucleotide 83.8 1.6 4E-05 24.6 3.8 80 200-291 169-256 (288)
98 cd01573 modD_like ModD; Quinol 83.7 1.8 4.5E-05 24.2 4.1 17 82-98 52-68 (272)
99 COG0135 TrpF Phosphoribosylant 83.3 3.5 8.9E-05 22.2 5.4 72 260-344 136-208 (208)
100 PRK09195 gatY tagatose-bisphos 83.2 2.6 6.7E-05 23.1 4.7 121 169-316 152-282 (284)
101 PRK03620 5-dehydro-4-deoxygluc 83.2 4.2 0.00011 21.6 12.1 79 189-277 85-168 (296)
102 cd00954 NAL N-Acetylneuraminic 83.1 4.2 0.00011 21.6 10.5 53 185-245 82-134 (288)
103 PRK06096 molybdenum transport 83.1 1.7 4.4E-05 24.3 3.8 63 192-269 202-265 (284)
104 PRK13135 consensus 83.0 4.3 0.00011 21.5 10.0 61 119-220 77-137 (267)
105 PRK09427 bifunctional indole-3 82.3 4 0.0001 21.8 5.4 145 64-219 130-300 (459)
106 COG0157 NadC Nicotinate-nucleo 82.1 3.7 9.4E-05 22.0 5.2 27 243-270 237-264 (280)
107 cd01572 QPRTase Quinolinate ph 81.8 3.4 8.7E-05 22.3 4.9 41 227-269 169-210 (268)
108 TIGR00677 fadh2_euk methylenet 81.4 2 5E-05 23.9 3.6 107 120-260 121-238 (312)
109 pfam02581 TMP-TENI Thiamine mo 81.4 4.9 0.00013 21.1 8.7 83 190-287 16-99 (180)
110 cd00452 KDPG_aldolase KDPG and 81.1 4.1 0.0001 21.7 5.1 125 120-273 39-176 (190)
111 PRK03512 thiamine-phosphate py 80.6 5.2 0.00013 21.0 8.0 78 189-281 22-100 (211)
112 PRK08185 hypothetical protein; 80.5 2.2 5.7E-05 23.5 3.6 126 169-316 146-278 (283)
113 COG0329 DapA Dihydrodipicolina 80.2 5.4 0.00014 20.9 10.2 22 125-146 61-82 (299)
114 cd01568 QPRTase_NadC Quinolina 80.1 2.2 5.6E-05 23.6 3.4 43 226-270 167-210 (269)
115 cd00947 TBP_aldolase_IIB Tagat 79.9 2 5.2E-05 23.8 3.2 125 169-316 145-276 (276)
116 cd00739 DHPS DHPS subgroup of 79.8 5.5 0.00014 20.8 12.8 144 185-337 23-188 (257)
117 TIGR01768 GGGP-family geranylg 79.3 3.2 8.1E-05 22.5 4.1 52 189-251 17-68 (242)
118 cd02940 DHPD_FMN Dihydropyrimi 79.0 5.8 0.00015 20.6 7.2 113 120-271 83-203 (299)
119 COG0826 Collagenase and relate 78.8 5.2 0.00013 21.0 5.0 170 48-230 72-270 (347)
120 PRK13137 consensus 78.6 6 0.00015 20.6 7.7 61 120-221 85-145 (266)
121 PRK07084 fructose-bisphosphate 78.6 6 0.00015 20.5 5.8 127 170-315 162-318 (321)
122 PRK07998 gatY putative fructos 78.1 3.3 8.4E-05 22.4 3.8 124 170-316 151-279 (283)
123 TIGR00676 fadh2 5,10-methylene 78.0 3.7 9.4E-05 22.0 4.1 105 189-321 176-290 (302)
124 cd02931 ER_like_FMN Enoate red 77.9 4.1 0.00011 21.7 4.3 14 192-205 156-169 (382)
125 PRK07709 fructose-bisphosphate 77.8 3.7 9.3E-05 22.0 4.0 123 169-316 153-283 (285)
126 PRK09389 (R)-citramalate synth 77.6 3.4 8.7E-05 22.3 3.8 52 187-248 143-194 (487)
127 PRK06106 nicotinate-nucleotide 77.5 5.4 0.00014 20.8 4.8 17 252-269 249-265 (281)
128 PRK13140 consensus 77.5 6.4 0.00016 20.3 10.8 53 119-207 74-126 (257)
129 cd00381 IMPDH IMPDH: The catal 77.1 6.5 0.00017 20.3 5.1 14 230-243 126-139 (325)
130 PRK13115 consensus 77.1 6.6 0.00017 20.3 10.0 18 190-207 118-135 (269)
131 cd04722 TIM_phosphate_binding 76.8 6.7 0.00017 20.2 5.7 69 192-270 77-145 (200)
132 cd00950 DHDPS Dihydrodipicolin 76.4 6.9 0.00017 20.1 8.1 52 185-245 81-132 (284)
133 cd00408 DHDPS-like Dihydrodipi 76.4 6.9 0.00017 20.1 11.7 82 186-278 79-168 (281)
134 PRK04180 pyridoxine biosynthes 76.3 6.8 0.00017 20.1 5.0 47 220-270 187-236 (293)
135 pfam01884 PcrB PcrB family. Th 76.2 6.9 0.00018 20.1 7.2 12 137-148 59-70 (231)
136 KOG2550 consensus 76.2 5.9 0.00015 20.6 4.7 67 190-268 254-320 (503)
137 TIGR02317 prpB methylisocitrat 76.1 2.4 6E-05 23.4 2.6 152 82-264 30-227 (287)
138 PRK05742 nicotinate-nucleotide 76.1 6.7 0.00017 20.2 4.9 80 200-291 160-244 (277)
139 pfam03437 BtpA BtpA family. Th 76.0 7 0.00018 20.1 10.5 18 326-343 237-254 (254)
140 TIGR03249 KdgD 5-dehydro-4-deo 75.8 7.1 0.00018 20.0 12.6 91 188-288 88-187 (296)
141 PRK02615 thiamine-phosphate py 75.7 7.1 0.00018 20.0 8.5 85 188-287 157-242 (345)
142 TIGR01271 CFTR_protein cystic 75.4 2.3 5.8E-05 23.5 2.4 169 142-324 1175-1400(1534)
143 TIGR00170 leuC 3-isopropylmala 74.9 1.7 4.4E-05 24.3 1.7 92 191-312 225-332 (472)
144 cd00951 KDGDH 5-dehydro-4-deox 74.8 7.5 0.00019 19.9 11.4 91 189-289 84-183 (289)
145 PRK13139 consensus 74.4 7.7 0.0002 19.8 9.2 62 119-221 76-137 (254)
146 cd07200 cPLA2_Grp-IVA Group IV 74.4 7.7 0.0002 19.8 6.0 17 195-211 341-357 (505)
147 COG0352 ThiE Thiamine monophos 74.3 7.7 0.0002 19.8 7.2 74 190-278 25-99 (211)
148 pfam05913 DUF871 Bacterial pro 74.1 7.8 0.0002 19.7 7.4 15 198-212 211-225 (357)
149 PRK04147 N-acetylneuraminate l 74.1 7.8 0.0002 19.7 10.7 80 185-275 85-172 (294)
150 TIGR01949 AroFGH_arch predicte 73.6 8 0.0002 19.7 9.7 131 196-343 100-250 (259)
151 TIGR00067 glut_race glutamate 73.6 2.8 7E-05 22.9 2.5 26 215-240 154-181 (262)
152 PRK01683 trans-aconitate 2-met 73.6 4.9 0.00013 21.2 3.7 15 298-312 214-228 (252)
153 cd04741 DHOD_1A_like Dihydroor 73.6 5 0.00013 21.1 3.8 25 120-144 73-98 (294)
154 PRK12738 kbaY tagatose-bisphos 73.4 2.9 7.3E-05 22.8 2.5 121 169-316 152-282 (286)
155 PRK08610 fructose-bisphosphate 73.4 8.1 0.00021 19.6 5.4 125 169-316 153-283 (286)
156 cd00564 TMP_TenI Thiamine mono 73.1 8.2 0.00021 19.6 8.3 73 191-278 17-90 (196)
157 pfam01116 F_bP_aldolase Fructo 72.4 4 0.0001 21.8 3.1 126 169-316 150-281 (283)
158 cd00423 Pterin_binding Pterin 72.2 8.6 0.00022 19.4 12.0 144 186-337 24-188 (258)
159 PRK13132 consensus 72.0 8.7 0.00022 19.4 9.3 17 191-207 105-121 (246)
160 PRK08508 biotin synthase; Prov 71.7 8.8 0.00022 19.4 9.2 16 120-135 74-89 (279)
161 PRK05286 dihydroorotate dehydr 71.7 5.7 0.00014 20.7 3.7 18 48-65 11-28 (336)
162 PRK08072 nicotinate-nucleotide 71.6 8.9 0.00023 19.3 4.9 10 260-269 207-216 (277)
163 cd00958 DhnA Class I fructose- 71.1 9.1 0.00023 19.3 8.6 109 195-314 85-209 (235)
164 cd02932 OYE_YqiM_FMN Old yello 71.0 9.1 0.00023 19.3 5.2 45 192-242 160-224 (336)
165 cd04727 pdxS PdxS is a subunit 70.6 8.6 0.00022 19.5 4.4 47 220-270 178-227 (283)
166 PRK13134 consensus 70.6 9.3 0.00024 19.2 9.7 61 119-220 79-139 (257)
167 COG0119 LeuA Isopropylmalate/h 70.4 9.4 0.00024 19.2 5.9 54 187-249 147-201 (409)
168 pfam00701 DHDPS Dihydrodipicol 70.2 9.5 0.00024 19.1 11.6 52 185-245 82-133 (289)
169 PRK12737 gatY tagatose-bisphos 70.1 9.5 0.00024 19.1 5.5 124 169-316 152-282 (284)
170 pfam00682 HMGL-like HMGL-like. 70.1 9.6 0.00024 19.1 12.1 47 194-249 145-191 (237)
171 COG0646 MetH Methionine syntha 69.7 9.7 0.00025 19.1 11.8 186 123-343 95-311 (311)
172 pfam00809 Pterin_bind Pterin b 69.5 9.8 0.00025 19.0 11.6 143 186-337 19-183 (208)
173 KOG1606 consensus 69.5 9.8 0.00025 19.0 7.3 46 221-270 192-240 (296)
174 PRK06543 nicotinate-nucleotide 69.1 6.1 0.00015 20.5 3.4 27 242-269 239-266 (281)
175 PRK07315 fructose-bisphosphate 68.8 3.9 9.9E-05 21.9 2.4 114 197-316 164-291 (293)
176 PRK02506 dihydroorotate dehydr 68.1 7.3 0.00019 19.9 3.6 22 120-142 76-97 (308)
177 COG1646 Predicted phosphate-bi 68.1 7.7 0.0002 19.8 3.7 21 228-249 60-80 (240)
178 pfam01180 DHO_dh Dihydroorotat 68.1 7.9 0.0002 19.7 3.8 23 120-142 76-98 (290)
179 cd00740 MeTr MeTr subgroup of 68.1 10 0.00027 18.8 10.1 25 181-205 21-45 (252)
180 PRK00043 thiE thiamine-phospha 66.8 11 0.00028 18.7 8.6 23 196-221 30-52 (210)
181 PRK09432 metF 5,10-methylenete 66.7 10 0.00026 18.9 4.2 110 187-322 164-278 (296)
182 cd02069 methionine_synthase_B1 66.4 11 0.00028 18.7 4.2 72 192-276 132-209 (213)
183 PRK08255 salicylyl-CoA 5-hydro 66.3 11 0.00029 18.6 5.6 52 192-243 562-627 (770)
184 pfam07745 Glyco_hydro_53 Glyco 66.2 11 0.00029 18.6 7.5 177 76-268 5-205 (332)
185 cd02801 DUS_like_FMN Dihydrour 65.9 12 0.00029 18.5 7.9 90 170-268 104-213 (231)
186 cd02803 OYE_like_FMN_family Ol 65.7 12 0.0003 18.5 5.2 46 192-237 147-205 (327)
187 COG3867 Arabinogalactan endo-1 65.4 12 0.0003 18.5 6.9 92 177-269 147-252 (403)
188 COG2908 Uncharacterized protei 64.9 9.4 0.00024 19.2 3.7 61 185-253 16-81 (237)
189 COG0434 SgcQ Predicted TIM-bar 64.0 12 0.00032 18.3 9.7 31 315-345 227-261 (263)
190 cd00952 CHBPH_aldolase Trans-o 63.8 13 0.00032 18.3 11.3 53 185-245 89-141 (309)
191 PRK11858 aksA trans-homoaconit 63.6 13 0.00032 18.3 13.3 52 188-249 147-198 (378)
192 TIGR00502 nagB glucosamine-6-p 63.5 13 0.00032 18.3 4.4 103 140-262 36-151 (260)
193 PRK07107 inositol-5-monophosph 63.1 12 0.0003 18.5 3.9 13 191-203 246-258 (497)
194 COG2513 PrpB PEP phosphonomuta 62.9 11 0.00028 18.7 3.7 34 185-222 165-198 (289)
195 PRK13399 fructose-1,6-bisphosp 62.8 6.1 0.00016 20.5 2.4 127 168-316 169-327 (347)
196 PRK11613 folP dihydropteroate 62.1 13 0.00034 18.1 11.9 17 189-205 41-57 (282)
197 COG3589 Uncharacterized conser 61.9 14 0.00034 18.1 6.0 22 74-97 51-72 (360)
198 PRK06512 thiamine-phosphate py 61.5 14 0.00035 18.0 8.2 19 260-278 86-105 (221)
199 cd02810 DHOD_DHPD_FMN Dihydroo 61.1 14 0.00036 18.0 7.4 111 120-271 82-199 (289)
200 pfam05853 DUF849 Prokaryotic p 61.1 14 0.00036 18.0 8.8 23 186-208 128-151 (274)
201 cd04740 DHOD_1B_like Dihydroor 59.8 15 0.00037 17.8 4.4 22 121-144 75-96 (296)
202 KOG2918 consensus 59.7 9.7 0.00025 19.1 3.0 17 224-242 233-249 (335)
203 KOG2335 consensus 59.2 15 0.00038 17.7 8.5 122 121-265 86-230 (358)
204 COG0379 NadA Quinolinate synth 59.0 12 0.00031 18.4 3.4 103 125-247 112-218 (324)
205 PRK08904 consensus 58.6 15 0.00039 17.7 5.0 146 119-310 44-204 (207)
206 TIGR01481 ccpA catabolite cont 56.8 3.8 9.6E-05 22.0 0.5 68 67-151 116-190 (332)
207 TIGR00430 Q_tRNA_tgt queuine t 56.6 16 0.00041 17.5 3.7 113 192-311 161-298 (415)
208 cd07202 cPLA2_Grp-IVC Group IV 56.2 9.9 0.00025 19.0 2.6 20 192-211 299-318 (430)
209 cd02903 Macro_BAL_like Macro d 55.8 17 0.00043 17.4 5.0 48 297-344 86-137 (137)
210 PRK09517 multifunctional thiam 55.6 17 0.00044 17.3 7.9 13 299-311 383-395 (738)
211 pfam07021 MetW Methionine bios 55.2 17 0.00044 17.3 3.6 28 242-269 17-44 (193)
212 cd02930 DCR_FMN 2,4-dienoyl-Co 55.1 17 0.00044 17.3 6.9 52 192-243 143-208 (353)
213 PRK05718 keto-hydroxyglutarate 54.7 18 0.00045 17.2 7.6 145 121-312 51-211 (212)
214 PRK08782 consensus 54.3 18 0.00046 17.2 7.2 148 120-313 52-214 (219)
215 cd04733 OYE_like_2_FMN Old yel 53.8 18 0.00046 17.2 5.9 46 192-243 155-220 (338)
216 PRK05414 urocanate hydratase; 53.4 18 0.00047 17.1 7.7 177 124-322 220-443 (558)
217 cd00377 ICL_PEPM Members of th 53.2 19 0.00047 17.1 5.6 13 196-208 94-106 (243)
218 cd00953 KDG_aldolase KDG (2-ke 52.9 19 0.00048 17.1 8.5 95 185-291 77-183 (279)
219 KOG0259 consensus 52.6 8.5 0.00022 19.5 1.7 32 280-312 310-341 (447)
220 TIGR02219 phage_NlpC_fam putat 52.5 6.3 0.00016 20.4 1.0 24 10-33 35-70 (135)
221 COG1759 5-formaminoimidazole-4 52.4 19 0.00049 17.0 5.2 51 262-313 220-283 (361)
222 pfam00838 TCTP Translationally 52.2 8.3 0.00021 19.6 1.6 62 194-256 61-122 (166)
223 PRK13958 N-(5'-phosphoribosyl) 51.7 20 0.0005 16.9 11.1 69 261-345 136-207 (207)
224 COG5012 Predicted cobalamin bi 51.3 20 0.00051 16.9 5.0 59 219-278 165-223 (227)
225 TIGR01304 IMP_DH_rel_2 IMP deh 51.1 20 0.00051 16.9 3.5 71 188-268 145-218 (376)
226 TIGR00655 PurU formyltetrahydr 50.9 18 0.00047 17.1 3.2 41 239-283 223-267 (294)
227 COG2844 GlnD UTP:GlnB (protein 50.8 6.2 0.00016 20.4 0.8 182 5-199 397-607 (867)
228 PRK10550 tRNA-dihydrouridine s 50.7 20 0.00052 16.8 5.3 68 192-268 154-224 (312)
229 TIGR02784 addA_alphas double-s 50.5 4.1 0.0001 21.7 -0.2 201 88-312 290-506 (1190)
230 PRK06857 consensus 50.2 21 0.00053 16.8 6.3 147 120-312 47-208 (209)
231 TIGR00674 dapA dihydrodipicoli 50.0 21 0.00053 16.7 5.3 86 191-288 85-186 (288)
232 PRK10605 N-ethylmaleimide redu 49.3 21 0.00054 16.7 6.2 45 195-239 168-225 (362)
233 PRK07259 dihydroorotate dehydr 49.3 21 0.00054 16.7 4.3 21 189-209 172-192 (301)
234 PRK07695 transcriptional regul 49.2 21 0.00055 16.7 10.5 26 192-220 20-45 (202)
235 PRK10415 tRNA-dihydrouridine s 49.0 22 0.00055 16.6 7.3 90 170-268 114-224 (321)
236 PRK13122 consensus 49.0 22 0.00055 16.6 9.5 52 120-207 60-111 (242)
237 PTZ00151 translationally contr 48.5 10 0.00026 19.0 1.6 60 196-256 67-126 (173)
238 pfam10498 IFT57 Intra-flagella 48.5 4.3 0.00011 21.6 -0.3 40 299-344 300-339 (355)
239 cd00019 AP2Ec AP endonuclease 48.1 22 0.00057 16.5 8.3 27 314-343 252-278 (279)
240 KOG3045 consensus 47.8 16 0.00041 17.5 2.5 152 176-342 110-280 (325)
241 pfam01373 Glyco_hydro_14 Glyco 47.7 22 0.00057 16.5 3.9 16 22-37 100-115 (399)
242 TIGR01880 Ac-peptdase-euk N-ac 47.3 13 0.00032 18.3 1.9 10 124-133 123-132 (433)
243 TIGR01466 cobJ_cbiH precorrin- 47.0 4.5 0.00011 21.4 -0.4 119 120-250 57-197 (254)
244 pfam08444 Gly_acyl_tr_C Aralky 46.7 7.3 0.00019 20.0 0.6 21 17-37 6-33 (89)
245 TIGR00494 crcB crcB protein; I 46.5 21 0.00053 16.7 2.9 49 133-192 58-110 (119)
246 pfam05148 Methyltransf_8 Hypot 46.0 24 0.00061 16.3 5.3 119 217-344 46-171 (214)
247 pfam00697 PRAI N-(5'phosphorib 45.6 24 0.00062 16.3 7.2 68 261-340 127-195 (195)
248 cd04824 eu_ALAD_PBGS_cysteine_ 45.3 15 0.00039 17.7 2.1 74 121-211 92-166 (320)
249 TIGR00746 arcC carbamate kinas 45.0 11 0.00028 18.7 1.3 236 78-343 35-292 (321)
250 cd02933 OYE_like_FMN Old yello 44.8 25 0.00063 16.2 3.2 58 181-238 147-217 (338)
251 cd00983 recA RecA is a bacter 44.8 25 0.00063 16.2 4.9 68 167-244 108-187 (325)
252 PRK00227 glnD PII uridylyl-tra 44.6 10 0.00026 18.9 1.1 42 6-50 334-379 (692)
253 TIGR00977 LeuA_rel 2-isopropyl 44.5 25 0.00064 16.2 3.6 41 187-236 155-195 (543)
254 PRK09197 fructose-bisphosphate 44.0 25 0.00065 16.1 4.4 136 167-316 183-347 (349)
255 TIGR01181 dTDP_gluc_dehyt dTDP 44.0 26 0.00065 16.1 4.1 105 142-248 9-135 (340)
256 PRK13646 cbiO cobalt transport 43.9 16 0.00041 17.5 2.0 84 253-345 188-283 (286)
257 PRK06559 nicotinate-nucleotide 43.6 26 0.00066 16.1 6.5 44 226-270 183-226 (290)
258 KOG2607 consensus 43.0 26 0.00067 16.0 3.1 24 123-146 66-89 (505)
259 COG2185 Sbm Methylmalonyl-CoA 42.0 27 0.0007 15.9 4.4 12 261-272 40-51 (143)
260 TIGR02146 LysS_fung_arch homoc 41.8 28 0.0007 15.9 5.3 146 87-251 33-203 (355)
261 PRK11815 tRNA-dihydrouridine s 41.7 28 0.0007 15.9 6.1 79 187-268 152-233 (333)
262 KOG2708 consensus 41.5 6 0.00015 20.5 -0.5 83 123-222 57-150 (336)
263 PRK00112 tgt queuine tRNA-ribo 41.4 28 0.00071 15.9 8.6 47 228-277 228-275 (366)
264 pfam00154 RecA recA bacterial 41.0 28 0.00072 15.8 4.9 67 168-244 106-184 (322)
265 cd03334 Fab1_TCP TCP-1 like do 40.3 29 0.00074 15.7 3.9 115 178-312 109-243 (261)
266 TIGR03569 NeuB_NnaB N-acetylne 40.2 29 0.00074 15.7 8.7 10 143-152 92-101 (329)
267 COG1038 PycA Pyruvate carboxyl 39.8 29 0.00075 15.7 5.8 48 159-208 581-652 (1149)
268 cd04734 OYE_like_3_FMN Old yel 39.7 30 0.00075 15.7 4.6 52 191-242 146-211 (343)
269 TIGR01036 pyrD_sub2 dihydrooro 39.5 8.1 0.00021 19.6 -0.1 76 147-236 173-248 (370)
270 KOG2794 consensus 39.4 17 0.00044 17.3 1.6 74 120-209 108-181 (340)
271 TIGR01264 tyr_amTase_E tyrosin 39.1 18 0.00047 17.1 1.7 33 279-312 290-322 (415)
272 TIGR02748 GerC3_HepT heptapren 39.1 30 0.00077 15.6 3.3 139 171-343 127-279 (325)
273 PRK13637 cbiO cobalt transport 38.7 31 0.00078 15.6 3.8 78 261-346 195-286 (287)
274 TIGR01582 FDH-beta formate deh 38.6 26 0.00066 16.1 2.4 81 223-317 122-211 (293)
275 PRK05581 ribulose-phosphate 3- 38.6 31 0.00078 15.6 9.5 87 138-258 43-130 (220)
276 COG0269 SgbH 3-hexulose-6-phos 38.5 31 0.00078 15.6 9.5 177 125-344 17-215 (217)
277 PRK13278 purP 5-formaminoimida 38.5 28 0.00072 15.8 2.6 59 251-312 206-277 (356)
278 PRK04452 acetyl-CoA decarbonyl 38.3 31 0.00079 15.5 4.2 25 44-71 69-93 (322)
279 TIGR03573 WbuX N-acetyl sugar 38.2 31 0.00079 15.5 3.5 23 183-205 96-119 (343)
280 COG4106 Tam Trans-aconitate me 38.0 31 0.0008 15.5 4.3 33 166-209 101-133 (257)
281 TIGR01693 UTase_glnD protein-P 37.1 4.8 0.00012 21.2 -1.5 44 5-53 408-459 (903)
282 cd00453 FTBP_aldolase_II Fruct 36.6 32 0.00082 15.4 2.6 134 169-314 178-338 (340)
283 PRK09485 mmuM homocysteine met 36.5 33 0.00084 15.3 12.1 130 192-342 151-308 (308)
284 PRK13946 shikimate kinase; Pro 36.1 33 0.00085 15.3 6.9 168 131-344 15-187 (195)
285 PRK06552 keto-hydroxyglutarate 36.0 34 0.00085 15.3 4.6 146 122-311 50-208 (209)
286 TIGR03617 F420_MSMEG_2256 prob 35.7 34 0.00086 15.3 4.4 46 292-342 272-317 (318)
287 PRK05282 peptidase E; Validate 35.6 34 0.00087 15.2 3.1 10 280-289 200-209 (233)
288 PRK13237 tyrosine phenol-lyase 35.4 34 0.00087 15.2 4.5 33 214-248 313-345 (459)
289 pfam02341 RcbX RbcX protein. T 35.2 35 0.00088 15.2 6.2 75 122-201 17-94 (108)
290 PRK12838 carbamoyl phosphate s 34.8 35 0.00089 15.2 4.5 78 241-326 169-250 (356)
291 PRK06052 5-methyltetrahydropte 34.7 35 0.00089 15.2 14.8 185 130-342 103-340 (343)
292 COG1608 Predicted archaeal kin 34.1 36 0.00091 15.1 6.9 139 177-339 75-242 (252)
293 cd00516 PRTase_typeII Phosphor 34.0 36 0.00092 15.1 6.6 10 261-270 205-214 (281)
294 smart00518 AP2Ec AP endonuclea 33.7 36 0.00093 15.0 8.1 41 202-252 134-177 (273)
295 PRK13238 tnaA tryptophanase; P 33.6 36 0.00093 15.0 5.2 33 214-248 314-346 (461)
296 pfam07555 NAGidase beta-N-acet 33.3 37 0.00094 15.0 6.4 111 171-289 84-219 (306)
297 pfam08610 Pex16 Peroxisomal me 33.1 22 0.00057 16.5 1.4 34 212-248 253-286 (298)
298 TIGR00423 TIGR00423 conserved 33.0 37 0.00095 15.0 4.3 33 118-152 71-105 (331)
299 TIGR01825 gly_Cac_T_rel pyrido 33.0 37 0.00095 15.0 4.0 52 281-343 228-285 (392)
300 cd00946 FBP_aldolase_IIA Class 32.9 38 0.00096 14.9 2.5 136 168-316 179-343 (345)
301 pfam01702 TGT Queuine tRNA-rib 32.7 38 0.00096 14.9 8.5 36 239-277 113-148 (238)
302 PRK00275 glnD PII uridylyl-tra 32.5 25 0.00065 16.1 1.6 58 6-66 412-475 (894)
303 PRK00025 lpxB lipid-A-disaccha 32.4 38 0.00097 14.9 7.7 65 6-73 18-91 (382)
304 TIGR00385 dsbE periplasmic pro 32.1 39 0.00098 14.9 2.9 21 197-217 63-83 (175)
305 PRK01759 glnD PII uridylyl-tra 32.1 32 0.00081 15.5 2.0 58 6-66 396-459 (862)
306 COG0042 tRNA-dihydrouridine sy 31.9 39 0.00099 14.8 10.6 216 20-291 11-251 (323)
307 cd02070 corrinoid_protein_B12- 31.5 39 0.001 14.8 3.4 59 197-268 131-191 (201)
308 PRK00455 pyrE orotate phosphor 31.2 20 0.00051 16.9 0.8 46 146-203 21-66 (200)
309 PRK00694 4-hydroxy-3-methylbut 31.2 40 0.001 14.8 10.7 29 298-326 487-519 (606)
310 pfam00724 Oxidored_FMN NADH:fl 31.2 40 0.001 14.8 3.8 51 192-242 149-213 (336)
311 KOG0628 consensus 31.2 40 0.001 14.8 6.8 38 52-91 87-133 (511)
312 KOG2673 consensus 31.0 28 0.00072 15.8 1.6 28 9-37 189-218 (485)
313 cd04738 DHOD_2_like Dihydrooro 30.9 40 0.001 14.7 6.1 14 258-271 226-239 (327)
314 PRK06978 nicotinate-nucleotide 30.7 41 0.001 14.7 6.1 11 260-270 218-228 (288)
315 cd02068 radical_SAM_B12_BD B12 30.5 41 0.001 14.7 6.2 46 223-268 52-97 (127)
316 COG3195 Uncharacterized protei 30.4 41 0.001 14.7 5.8 67 167-250 66-132 (176)
317 PRK12560 adenine phosphoribosy 30.2 41 0.0011 14.6 2.4 33 51-88 30-62 (184)
318 COG3243 PhaC Poly(3-hydroxyalk 29.8 42 0.0011 14.6 2.4 35 118-152 161-197 (445)
319 pfam01207 Dus Dihydrouridine s 29.4 43 0.0011 14.6 5.6 73 187-268 139-213 (309)
320 TIGR00863 P2X cation transport 29.4 23 0.00057 16.5 0.9 43 245-287 240-283 (377)
321 TIGR02142 modC_ABC molybdate A 29.4 33 0.00083 15.4 1.7 43 207-260 157-199 (361)
322 PRK03059 PII uridylyl-transfer 29.3 31 0.00078 15.6 1.5 58 6-66 393-456 (857)
323 PRK08271 anaerobic ribonucleos 29.3 18 0.00046 17.2 0.4 58 265-326 504-577 (625)
324 cd00245 Glm_e Coenzyme B12-dep 28.9 43 0.0011 14.5 3.1 118 181-312 220-338 (428)
325 cd00003 PNPsynthase Pyridoxine 28.8 44 0.0011 14.5 7.5 91 225-339 111-201 (234)
326 TIGR02151 IPP_isom_2 isopenten 28.8 44 0.0011 14.5 6.3 116 122-243 103-274 (349)
327 cd02196 PurM PurM (Aminoimidaz 28.7 36 0.00091 15.1 1.8 28 318-345 260-287 (297)
328 TIGR00583 mre11 DNA repair pro 28.6 15 0.00037 17.8 -0.2 41 3-48 175-235 (424)
329 TIGR02872 spore_ytvI sporulati 28.5 44 0.0011 14.5 4.2 42 151-196 175-221 (350)
330 cd04735 OYE_like_4_FMN Old yel 28.5 44 0.0011 14.5 4.0 15 192-206 150-164 (353)
331 TIGR00884 guaA_Cterm GMP synth 28.4 19 0.00048 17.0 0.3 187 122-337 2-217 (319)
332 PRK00654 glgA glycogen synthas 28.4 6.7 0.00017 20.2 -2.0 11 135-145 290-300 (476)
333 pfam01738 DLH Dienelactone hyd 28.2 45 0.0011 14.4 4.9 29 122-150 81-113 (216)
334 PRK13533 7-cyano-7-deazaguanin 28.0 45 0.0011 14.4 9.0 30 121-151 201-232 (486)
335 COG3403 Uncharacterized conser 28.0 32 0.00081 15.5 1.4 47 183-229 70-118 (257)
336 PRK06806 fructose-bisphosphate 27.8 45 0.0012 14.4 6.5 123 168-316 149-279 (281)
337 PRK13306 ulaD 3-keto-L-gulonat 27.7 45 0.0012 14.4 11.5 58 272-344 152-214 (216)
338 TIGR02764 spore_ybaN_pdaB poly 27.6 43 0.0011 14.5 2.0 139 168-319 43-191 (198)
339 TIGR01061 parC_Gpos DNA topois 27.5 18 0.00047 17.1 0.1 29 44-84 200-228 (745)
340 TIGR01415 trpB_rel pyridoxal-p 26.9 27 0.0007 15.9 0.9 26 302-327 389-415 (426)
341 cd01473 vWA_CTRP CTRP for CS 26.9 47 0.0012 14.3 2.4 17 215-231 15-31 (192)
342 pfam00708 Acylphosphatase Acyl 26.8 47 0.0012 14.3 4.2 39 305-343 22-63 (90)
343 TIGR03191 benz_CoA_bzdO benzoy 26.8 47 0.0012 14.2 3.4 59 286-345 359-427 (430)
344 PRK07226 fructose-bisphosphate 26.7 47 0.0012 14.2 12.3 137 193-343 100-253 (266)
345 pfam03562 MltA MltA specific i 26.5 48 0.0012 14.2 2.8 48 137-184 51-106 (113)
346 COG2520 Predicted methyltransf 26.2 43 0.0011 14.5 1.8 52 124-182 177-229 (341)
347 PRK11823 DNA repair protein Ra 26.2 48 0.0012 14.2 2.9 10 227-236 197-206 (454)
348 TIGR01496 DHPS dihydropteroate 26.1 48 0.0012 14.2 10.7 147 186-339 23-196 (268)
349 PRK13277 5-formaminoimidazole- 26.1 48 0.0012 14.2 2.8 58 252-312 213-283 (363)
350 cd06556 ICL_KPHMT Members of t 26.1 49 0.0012 14.2 5.4 40 191-247 94-133 (240)
351 cd04729 NanE N-acetylmannosami 26.0 49 0.0012 14.2 3.8 100 125-267 50-149 (219)
352 PRK01242 rpl39e 50S ribosomal 25.8 33 0.00085 15.3 1.2 31 4-36 9-42 (51)
353 cd00147 cPLA2_like Cytosolic p 25.7 49 0.0013 14.1 4.9 92 140-234 78-174 (438)
354 COG2951 MltB Membrane-bound ly 25.5 50 0.0013 14.1 6.6 35 124-158 172-214 (343)
355 PRK01636 ccrB camphor resistan 25.5 50 0.0013 14.1 3.2 41 141-192 54-96 (118)
356 TIGR01011 rpsB_bact ribosomal 25.3 35 0.00088 15.2 1.2 62 78-145 2-70 (227)
357 PRK09376 rho transcription ter 25.2 50 0.0013 14.1 3.5 40 170-209 207-265 (416)
358 TIGR02279 PaaC-3OHAcCoADH 3-hy 25.2 49 0.0013 14.1 2.0 45 121-168 197-248 (508)
359 COG1407 Predicted ICC-like pho 25.2 50 0.0013 14.1 3.3 39 23-76 34-72 (235)
360 PRK13125 trpA tryptophan synth 25.1 50 0.0013 14.0 7.7 17 191-207 96-112 (247)
361 TIGR01367 pyrE_Therm orotate p 25.1 43 0.0011 14.5 1.7 81 145-247 14-94 (205)
362 COG4912 Predicted DNA alkylati 25.1 32 0.0008 15.5 1.0 60 285-344 147-218 (222)
363 cd00617 Tnase_like Tryptophana 24.5 52 0.0013 14.0 5.3 32 215-248 289-320 (431)
364 PRK11320 prpB 2-methylisocitra 24.5 52 0.0013 14.0 3.8 63 1-63 2-81 (292)
365 pfam07050 consensus 24.5 29 0.00075 15.7 0.7 16 177-192 100-115 (145)
366 pfam04476 DUF556 Protein of un 24.4 52 0.0013 14.0 7.7 66 196-267 141-207 (235)
367 PRK12564 carbamoyl phosphate s 24.3 52 0.0013 13.9 5.1 79 241-326 173-255 (355)
368 PRK09140 2-dehydro-3-deoxy-6-p 24.2 52 0.0013 13.9 4.8 146 121-313 46-204 (206)
369 COG2167 RPL39 Ribosomal protei 24.2 37 0.00093 15.0 1.2 34 4-39 9-45 (51)
370 COG4782 Uncharacterized protei 24.1 53 0.0013 13.9 4.2 67 192-258 137-211 (377)
371 PRK04374 PII uridylyl-transfer 23.9 53 0.0014 13.9 2.2 59 5-67 401-465 (869)
372 PRK13957 indole-3-glycerol-pho 23.6 54 0.0014 13.9 2.4 68 197-279 122-195 (247)
373 PRK06801 hypothetical protein; 23.6 54 0.0014 13.9 2.4 125 170-316 154-284 (286)
374 pfam04072 LCM Leucine carboxyl 23.6 54 0.0014 13.8 3.2 99 236-341 67-174 (175)
375 cd06295 PBP1_CelR Ligand bindi 23.5 36 0.00093 15.0 1.0 14 62-75 59-72 (275)
376 pfam04481 DUF561 Protein of un 23.5 54 0.0014 13.8 3.2 163 43-272 41-218 (243)
377 TIGR01762 chlorin-enz chlorina 23.3 22 0.00056 16.6 -0.1 10 142-152 15-24 (293)
378 COG1010 CobJ Precorrin-3B meth 23.3 21 0.00054 16.7 -0.2 44 198-250 153-197 (249)
379 KOG1436 consensus 23.2 28 0.00071 15.8 0.4 29 196-225 247-275 (398)
380 TIGR01859 fruc_bis_ald_ fructo 23.2 55 0.0014 13.8 4.0 159 125-315 126-336 (339)
381 pfam11823 DUF3343 Protein of u 23.1 55 0.0014 13.8 2.2 27 319-345 37-63 (73)
382 cd04739 DHOD_like Dihydroorota 23.0 55 0.0014 13.8 3.8 22 188-209 177-198 (325)
383 cd02904 Macro_H2A_like Macro d 23.0 55 0.0014 13.8 5.5 10 83-92 15-24 (186)
384 pfam08824 Serine_rich Serine r 22.9 55 0.0014 13.8 2.3 70 123-208 6-76 (159)
385 TIGR01488 HAD-SF-IB HAD-superf 22.8 56 0.0014 13.8 2.0 72 213-291 80-154 (204)
386 pfam02126 PTE Phosphotriestera 22.7 56 0.0014 13.7 6.4 127 183-313 100-248 (308)
387 TIGR00416 sms DNA repair prote 22.6 56 0.0014 13.7 4.2 45 296-341 218-266 (481)
388 COG0770 MurF UDP-N-acetylmuram 22.5 56 0.0014 13.7 5.9 16 6-21 6-21 (451)
389 pfam03608 EII-GUT PTS system e 22.4 46 0.0012 14.3 1.4 31 6-36 51-92 (168)
390 TIGR00336 pyrE orotate phospho 22.4 37 0.00095 15.0 0.9 52 145-209 14-66 (187)
391 KOG1517 consensus 22.1 57 0.0015 13.7 3.4 16 6-21 392-407 (1387)
392 PRK05007 PII uridylyl-transfer 22.1 43 0.0011 14.5 1.2 58 6-66 410-473 (881)
393 TIGR02313 HpaI-NOT-DapA 2,4-di 22.0 57 0.0015 13.6 3.9 170 125-339 57-258 (294)
394 TIGR01265 tyr_nico_aTase tyros 22.0 58 0.0015 13.6 4.0 33 280-313 299-331 (424)
395 PRK00278 trpC indole-3-glycero 21.7 58 0.0015 13.6 2.0 69 197-280 131-205 (261)
396 PRK00311 panB 3-methyl-2-oxobu 21.4 59 0.0015 13.6 4.8 136 124-317 122-258 (266)
397 PRK05872 short chain dehydroge 21.4 51 0.0013 14.0 1.5 44 170-214 100-147 (296)
398 PRK09354 recA recombinase A; P 21.4 59 0.0015 13.6 5.2 69 166-244 112-192 (350)
399 cd01121 Sms Sms (bacterial rad 21.3 47 0.0012 14.2 1.3 17 225-243 188-204 (372)
400 pfam06408 consensus 21.2 60 0.0015 13.5 2.5 18 190-207 187-204 (471)
401 TIGR01836 PHA_synth_III_C poly 21.2 60 0.0015 13.5 3.6 59 83-151 101-161 (367)
402 KOG2700 consensus 21.2 60 0.0015 13.5 4.0 15 139-153 191-205 (481)
403 PRK02048 4-hydroxy-3-methylbut 21.1 60 0.0015 13.5 11.4 88 223-326 432-527 (613)
404 COG0167 PyrD Dihydroorotate de 20.6 61 0.0016 13.5 3.7 89 121-210 79-197 (310)
405 cd02907 Macro_Af1521_BAL_like 20.5 62 0.0016 13.4 4.7 42 180-224 96-139 (175)
406 cd06281 PBP1_LacI_like_5 Ligan 20.4 47 0.0012 14.3 1.1 23 51-74 40-62 (269)
407 cd01218 PH_phafin2 Phafin2 Pl 20.4 62 0.0016 13.4 2.8 12 71-82 23-34 (104)
408 PRK05092 PII uridylyl-transfer 20.3 35 0.0009 15.1 0.4 46 5-53 447-498 (934)
409 KOG2023 consensus 20.2 42 0.0011 14.6 0.8 30 207-236 546-575 (885)
410 cd06296 PBP1_CatR_like Ligand- 20.2 48 0.0012 14.2 1.1 24 51-75 40-63 (270)
411 TIGR03278 methan_mark_10 putat 20.2 63 0.0016 13.4 2.5 11 56-66 153-163 (404)
412 COG4790 EscR Type III secretor 20.1 56 0.0014 13.7 1.4 72 143-224 62-133 (214)
413 pfam03102 NeuB NeuB family. Ne 20.1 63 0.0016 13.4 7.7 13 296-308 217-229 (240)
No 1
>TIGR01464 hemE uroporphyrinogen decarboxylase; InterPro: IPR006361 This entry represents uroporphyrinogen decarboxylase (HemE), which catalyzes the fifth step in the heme biosynthetic pathway, converting uroporphyrinogen III to coproporphyrinogen III by decarboxylating the four acetate side chains of the substrate . This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products. This activity is essential in all organisms, and subnormal activity of URO-D leads to the most common form of porphyria in humans, porphyria cutanea tarda (PCT).; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin biosynthetic process.
Probab=100.00 E-value=0 Score=966.93 Aligned_cols=336 Identities=45% Similarity=0.781 Sum_probs=316.8
Q ss_pred HHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCC
Q ss_conf 99999669989999761462312345799999761553899842799999987212876298726521332001043244
Q gi|254780812|r 7 KILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADALGR 86 (346)
Q Consensus 7 ~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~ 86 (346)
+||||++|++++||||||||||||||||||++|++++||+|+|+|||+||||||||+||||+|||||||||||||+|||+
T Consensus 1 ~~L~A~~Ge~~~r~PVW~MRQAGRYLPEYr~~R~~~~dF~~~c~~pdla~EvTLQP~rr~g~DAAIlFsDILv~p~alG~ 80 (351)
T TIGR01464 1 LFLRAAKGEVVDRPPVWFMRQAGRYLPEYRELRAKAGDFLELCRNPDLAVEVTLQPIRRFGVDAAILFSDILVPPQALGL 80 (351)
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCHHHHHCCCCCEEEEECCCHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 94433157979597774301534686689999635866688734924178721374535488768881220238400385
Q ss_pred CEEEECCCCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 3373168875222-3333355420567012344323787778764210245-3201111479999999961246776524
Q gi|254780812|r 87 NVRFVENEGPRMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPN-HITLIGFCGAPWTVASYMISGGFIKDHG 164 (346)
Q Consensus 87 ~v~f~~~~GP~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~-~~pLIGF~GgP~TlasYmieG~~sk~~~ 164 (346)
+|+|.+|+||+++ |+++.++...... ....+.+++|+|||+++|++|++ ++|||||||||||||||||||||||+|.
T Consensus 81 ~v~f~~G~GP~~~~p~~~~~dv~~l~~-~d~~~~l~yV~~ai~~~r~~L~~~~vpLIGFaGaPwTLasYmIEGggSk~~~ 159 (351)
T TIGR01464 81 DVEFVEGKGPVISNPIRTAEDVERLKE-FDPESELSYVYEAIKLLREELDGVEVPLIGFAGAPWTLASYMIEGGGSKDFA 159 (351)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCCCCHH
T ss_conf 168745878716889988666866213-2303301279999999999837788644630686055343010278986779
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC-----C
Q ss_conf 67753013722289999999999999977777549816784383110068356777612722689999863088-----6
Q gi|254780812|r 165 QNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP-----N 239 (346)
Q Consensus 165 ~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~-----~ 239 (346)
++|+|||++|+.+|+||++||+.+++||.+||+||||||||||||||.||+++|++||+||+++|++++|++++ +
T Consensus 160 ~~K~f~y~~P~~~~aLl~~Lt~~~~~YL~~Qv~AGA~avQiFDSWag~Ls~~df~~fv~py~~~I~~~vk~~~~e~~~~~ 239 (351)
T TIGR01464 160 KAKKFMYEEPEALHALLNKLTDATIEYLSEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLAKIIEEVKKRLPEFVLEN 239 (351)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99998720858999999999999999999988618848999633464479878888508899999999987621257898
Q ss_pred CEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCC--EEEECCCCHHHHCCCHHHHHHHHHHHHHHHCC--
Q ss_conf 236024311000013420147872230467799899997-0798--46968888467709988999999999997325--
Q gi|254780812|r 240 AKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKE--GPVQGNLDPMRLVVGNQVMIDGVNAILDVLGS-- 314 (346)
Q Consensus 240 vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~--~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~-- 314 (346)
+|+|+|++|+++.++.+.+..++|++|+||++|+.+|++ ++++ ++|||||||..|+++++.++++++++|+.++.
T Consensus 240 ~P~I~F~~G~g~~l~~~~~~g~~DvvglDW~v~~~~a~~~~~~~kP~~~QGNLDP~~L~~~~~~l~~~~~~~l~~~~~~A 319 (351)
T TIGR01464 240 VPVILFAKGAGHLLEELAETGPADVVGLDWSVDLKEARKRVGDGKPVAIQGNLDPAVLYAPEEALEEKVERILEAFGQEA 319 (351)
T ss_pred CCEEEECCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 86688528778999999706992088605888989999971799987885643322221898999999999999731257
Q ss_pred C---CCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9---9289608976336688999999999973
Q gi|254780812|r 315 G---PFIFNLGHGITPQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 315 ~---~~I~nLGhGi~p~tp~eNv~~~v~~vr~ 343 (346)
+ +|||||||||+|+||+|||++|||+||+
T Consensus 320 gg~~~yIFNLGHGilP~~p~E~v~~lve~Vh~ 351 (351)
T TIGR01464 320 GGKSGYIFNLGHGILPETPPENVKALVEYVHS 351 (351)
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 89988587657778899897999999998529
No 2
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=100.00 E-value=0 Score=892.58 Aligned_cols=343 Identities=42% Similarity=0.742 Sum_probs=325.2
Q ss_pred CCC-HHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf 976-0579999966998999976146231234579999976155389984279999998721287629872652133200
Q gi|254780812|r 1 MNE-RKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILV 79 (346)
Q Consensus 1 M~~-~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~ 79 (346)
|+. +|+|||+||+|+++|||||||||||||||||||++|++++||+|+|+|||+|+||||||++|||+||||+|||||+
T Consensus 1 ~~~~~n~~~l~al~g~~~~r~PvW~MRQAGRylpey~~~r~~~~~f~~~c~~pela~evtlqPi~rf~~DAAIlFSDIL~ 80 (347)
T PRK00115 1 MTELKNDRFLRALRGEPVDRTPVWMMRQAGRYLPEYRALRAKAGSFLELCKNPELAAEVTLQPVRRYGVDAAILFSDILT 80 (347)
T ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHCHHHHCCCCCCCCCCCEEE
T ss_conf 97421589999976999999998888346635799999998554699885199999999856499829971136667100
Q ss_pred CCHHHCCCEEEECCCCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10432443373168875222-33333554205670123443237877787642102453201111479999999961246
Q gi|254780812|r 80 IADALGRNVRFVENEGPRMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGG 158 (346)
Q Consensus 80 ~~ealG~~v~f~~~~GP~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~ 158 (346)
+|||||++|+|.+|.||+++ |+++.++.... ......+++++|+|||+++|++|++++|||||||||||||||||||+
T Consensus 81 ~~~alG~~v~f~~g~GP~~~~pi~~~~d~~~l-~~~~~~~~l~~v~eai~~~r~~l~~~~pLIGF~GaPwTLasYmieG~ 159 (347)
T PRK00115 81 PPDAMGLDLDFEEGEGPVFENPIRTLADVEKL-PIPDPEEDLPYVLEAVRLLRRELPGEVPLIGFAGSPWTLATYMVEGG 159 (347)
T ss_pred CHHHHCCCEEECCCCCCCCCCCCCCHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCC
T ss_conf 55981983785689898678776898888633-64256777379999999999972888865764476599999998488
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 77652467753013722289999999999999977777549816784383110068356777612722689999863088
Q gi|254780812|r 159 FIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP 238 (346)
Q Consensus 159 ~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~ 238 (346)
++|+|.++++||+++|+.+|+||+++|+++++|+++||+||||+|||||||||+||+++|++|++||+++|++++|++++
T Consensus 160 ~sk~~~~~k~~~~~~p~~~~~ll~~lt~~~i~yl~~Qi~aGAd~iqIFDSwag~L~~~~f~~f~~~~~~~I~~~ik~~~~ 239 (347)
T PRK00115 160 GSKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFSLPYMKRIVAELKREGP 239 (347)
T ss_pred CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98467999998751999999999999999999999999819987885055334378899999988999999999998389
Q ss_pred CCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 6236024311000013420147872230467799899997-079846968888467709988999999999997325992
Q gi|254780812|r 239 NAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPF 317 (346)
Q Consensus 239 ~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~ 317 (346)
++|+||||||+++.++++.+ +|+||+|+||++|+.+|++ ++++++||||+||..|++++++++++++++|+.++++||
T Consensus 240 ~~piI~f~kg~~~~l~~~~~-~~~d~is~D~~~~l~~a~~~~~~~~~lQGNlDP~~L~~~~e~i~~~~~~il~~~~~~g~ 318 (347)
T PRK00115 240 DVPVILFPKGAGELLEAMAE-TGVDAVGLDWTVDLAEARRRVGDKVALQGNLDPAVLLAPPEAIEEEVRAILDAFGGPGH 318 (347)
T ss_pred CCCEEEECCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 99879963896056899985-69988962787899999998499817982798688759999999999999997489997
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8960897633668899999999997306
Q gi|254780812|r 318 IFNLGHGITPQVDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 318 I~nLGhGi~p~tp~eNv~~~v~~vr~~~ 345 (346)
||||||||+|+||+|||++||++||+|+
T Consensus 319 IfnLGHGI~P~tp~enV~~~V~~vr~~s 346 (347)
T PRK00115 319 IFNLGHGILPETPPENVKALVEAVHELS 346 (347)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9968998498989999999999999856
No 3
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=100.00 E-value=0 Score=869.59 Aligned_cols=332 Identities=45% Similarity=0.788 Sum_probs=315.4
Q ss_pred HHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCCCE
Q ss_conf 99966998999976146231234579999976155389984279999998721287629872652133200104324433
Q gi|254780812|r 9 LEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADALGRNV 88 (346)
Q Consensus 9 l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~~v 88 (346)
||||+|+++|||||||||||||||||||++|+++ ||+|+|+|||+|+||||||++|||+||||+|||||++|||||++|
T Consensus 1 l~al~~~~~~~~PvW~MRQAGRylpey~~~r~~~-~f~~~c~~pe~a~evtlqPi~rf~~DAaIlFSDIL~~~~alG~~v 79 (335)
T cd00717 1 LRALRGEPVDRPPVWFMRQAGRYLPEYRELRAKY-SFLELCKNPELAAEVTLQPVRRFGVDAAIIFSDILVPLEAMGMDV 79 (335)
T ss_pred CHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHCC-CHHHHHCCHHHHHHHHHCCHHHHCCCEEECCCCCCCCHHHHCCEE
T ss_conf 9131299999999888845662579999988469-999985599999999864098839875750453203649839838
Q ss_pred EEECCCCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 73168875222-33333554205670123443237877787642102453201111479999999961246776524677
Q gi|254780812|r 89 RFVENEGPRMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNR 167 (346)
Q Consensus 89 ~f~~~~GP~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~ 167 (346)
+|.+|.||+++ |+++.++... .......+++++|+|||+++|++|++++|||||||||||||||||||+++|+|.+++
T Consensus 80 ~f~~~~GP~~~~pi~~~~d~~~-l~~~~~~~~l~~v~eai~~~r~~L~~~~pLIGF~G~PwTLasYmieG~~sk~~~~~k 158 (335)
T cd00717 80 EFVEGKGPVIPNPIRTEADVDR-LLVPDPEEELSYVYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAK 158 (335)
T ss_pred EECCCCCCCCCCCCCCHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf 9747978866898889999974-366470656569999999999973888876886387699999998389985579998
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 53013722289999999999999977777549816784383110068356777612722689999863088623602431
Q gi|254780812|r 168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
+||+++|+.+++||+++|+++++|+++|++||||+|||||||||.||+++|++|++||+++|++++|+++|++|+||||+
T Consensus 159 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGAd~iqIFDSwag~L~~~~f~~f~~p~~~~I~~~ik~~~~~vpiI~f~~ 238 (335)
T cd00717 159 KMMYTDPEAFHALLDKLTDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAK 238 (335)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 77613889999999999999999999999819987885075202068999999899999999999985289997899768
Q ss_pred CCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCC-CCEEEECCCC
Q ss_conf 1000013420147872230467799899997-0798469688884677099889999999999973259-9289608976
Q gi|254780812|r 248 GAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSG-PFIFNLGHGI 325 (346)
Q Consensus 248 g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~-~~I~nLGhGi 325 (346)
|+++.+.++.+ +|+||+|+||++|+.+|++ ++++++||||+||.+|++++++++++++++++.++++ ||||||||||
T Consensus 239 ~~~~~l~~~~~-~~~d~isiD~~~~l~~a~~~l~~~~~lQGNlDP~~L~~~~e~i~~~~~~il~~~~~~~g~IfnLGHGI 317 (335)
T cd00717 239 GAGGLLEDLAQ-LGADVVGLDWRVDLDEARKRLGPKVALQGNLDPALLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGI 317 (335)
T ss_pred CCHHHHHHHHH-CCCCEEECCCCCCHHHHHHHCCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 85789999986-39877742777898999998199827966898789769999999999999998489998598799986
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 336688999999999973
Q gi|254780812|r 326 TPQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 326 ~p~tp~eNv~~~v~~vr~ 343 (346)
+|+||+|||++||++||+
T Consensus 318 ~p~tp~enV~~~ve~Vrs 335 (335)
T cd00717 318 LPDTPPENVKALVEAVHS 335 (335)
T ss_pred CCCCCHHHHHHHHHHHCC
T ss_conf 989899999999999629
No 4
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=789.68 Aligned_cols=342 Identities=42% Similarity=0.717 Sum_probs=322.1
Q ss_pred CHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCH
Q ss_conf 60579999966998999976146231234579999976155389984279999998721287629872652133200104
Q gi|254780812|r 3 ERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIAD 82 (346)
Q Consensus 3 ~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~e 82 (346)
++|+|||+|++|+++||+|||+|||||||+||||++|+++.||.|+|+|||+|+|+|+||++|||+||||+|||||++++
T Consensus 5 ~~~~~fl~al~g~~vdr~PVw~mrqAgry~pey~~~r~~~~s~~d~~~~~e~~~evtl~p~~~~~~DAailf~DIlv~~~ 84 (352)
T COG0407 5 TKNDRFLRALKGKPVDRTPVWMMRQAGRYLPEYRALREKGGSFLEACKNPELAAEVTLQPVRRYGLDAAILFSDILVPPE 84 (352)
T ss_pred CHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHCCCHH
T ss_conf 31779999974899997887766001245609999987527888885399999999964487729872530012201389
Q ss_pred HHCCCEEEECCCCCCC-CCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3244337316887522-233333554205670123443237877787642102453201111479999999961246776
Q gi|254780812|r 83 ALGRNVRFVENEGPRM-DPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIK 161 (346)
Q Consensus 83 alG~~v~f~~~~GP~~-~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk 161 (346)
|||++|+|.++.||++ +|+...++............++++|++||+++|+++++++|||||+||||||||||+|||+||
T Consensus 85 alG~~v~f~~~~gP~v~~~~~~~~~~~~~~~~~~~~~~~~~V~~ai~~lrekl~~~~pLIgf~gsP~TlAsymieg~~s~ 164 (352)
T COG0407 85 ALGCEVRFGEGKGPSVLKPIRDKEDVELLVPLLDPEGRLPYVLDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSK 164 (352)
T ss_pred HCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCC
T ss_conf 84975632788799567897866666540577673110179999999999974899972875378799999997689841
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCE
Q ss_conf 52467753013722289999999999999977777549816784383110068356777612722689999863088623
Q gi|254780812|r 162 DHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAK 241 (346)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vp 241 (346)
++.+++.||+++|+.+|+||+++|+.+++|+++|++||||+|||||||+|.|+...|++|++||.++|++.+|+.++++|
T Consensus 165 ~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~p 244 (352)
T COG0407 165 DFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGVP 244 (352)
T ss_pred CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 18999999987989999999999999999999999818888986335555677425798845679999999887289986
Q ss_pred EECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHHH-CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCC-CCEE
Q ss_conf 60243110000134201478722304677998999970-798469688884677099889999999999973259-9289
Q gi|254780812|r 242 FISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALEL-QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSG-PFIF 319 (346)
Q Consensus 242 iI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~~-~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~-~~I~ 319 (346)
+||||+|+++.+..|.+ +|+|++|+||+++++.|++. ++..+|||||||.+|+++++.|+++|+++|+.+.+. ||||
T Consensus 245 ii~f~~ga~~~l~~m~~-~g~d~l~vdw~v~l~~a~~~~~~~~~lqGNldP~lL~~~~~~i~~~~~~iL~~~~~~~~~If 323 (352)
T COG0407 245 VIHFCKGAGHLLEDMAK-TGFDVLGVDWRVDLKEAKKRLGDKVALQGNLDPALLYAPPEAIKEEVKRILEDGGDGSGYIF 323 (352)
T ss_pred EEEECCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 89977882778999986-28867842135688999998388846883267276359999999999999997546788032
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 60897633668899999999997306
Q gi|254780812|r 320 NLGHGITPQVDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 320 nLGhGi~p~tp~eNv~~~v~~vr~~~ 345 (346)
||||||+|+||+|||++||++||+++
T Consensus 324 nlGhGI~P~tp~e~v~~lve~v~~~~ 349 (352)
T COG0407 324 NLGHGILPETPPENVKALVEAVHEYS 349 (352)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68987699998799999999999863
No 5
>KOG2872 consensus
Probab=100.00 E-value=0 Score=796.19 Aligned_cols=341 Identities=38% Similarity=0.674 Sum_probs=327.0
Q ss_pred CHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCH
Q ss_conf 60579999966998999976146231234579999976155389984279999998721287629872652133200104
Q gi|254780812|r 3 ERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIAD 82 (346)
Q Consensus 3 ~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~e 82 (346)
.||++||||++||.+||||||+||||||||||||++|++. ||++.|+|||+|||+||||++||..||||||||||+||.
T Consensus 10 ~kndlllRAakGE~vdrpPvW~MRQAGRYl~eyqel~~k~-~Ff~~c~~~el~~EitlQP~rrF~~DaaIIFSDILvipq 88 (359)
T KOG2872 10 LKNDLLLRAAKGEEVDRPPVWIMRQAGRYLPEYQELRAKQ-DFFETCRNPELACEITLQPLRRFRLDAAIIFSDILVIPQ 88 (359)
T ss_pred CCCHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHC-CHHHHCCCCCCEEEEECCHHHCCCCCEEEEEECCCCCCH
T ss_conf 7764888874176157883689887410128999998743-498761785333667425233048862688521233705
Q ss_pred HHCCCEEEECCCCCCC-CCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3244337316887522-233333554205670123443237877787642102453201111479999999961246776
Q gi|254780812|r 83 ALGRNVRFVENEGPRM-DPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIK 161 (346)
Q Consensus 83 alG~~v~f~~~~GP~~-~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk 161 (346)
|||+.|++.++.||+| +|+++.++.+...+......+|.+|.+||+++|.+|++++||||||||||||++|||||||||
T Consensus 89 algm~v~m~egkGP~~p~Plr~~eDl~rl~~~~~~~s~L~yVgdAit~~R~kl~g~vpl~GF~GaPwTlm~YmiEGGgSk 168 (359)
T KOG2872 89 ALGMPVDMVEGKGPVFPEPLRVPEDLKRLRDPEVVESELGYVGDAITLTRQKLDGRVPLIGFVGAPWTLMTYMIEGGGSK 168 (359)
T ss_pred HCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHEEEECCCCCH
T ss_conf 32960798515688789988897899874268514554026999999999985685642431488743412322078720
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCC-
Q ss_conf 5246775301372228999999999999997777754981678438311006835677761272268999986308862-
Q gi|254780812|r 162 DHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNA- 240 (346)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~v- 240 (346)
+|.++|.|++..|+..|+||+++|+++++|+..|+.|||+++||||||||.|||++|++|++||+++|++++|+++++.
T Consensus 169 t~~~aK~w~~~~Pe~sh~lL~~lTda~v~Yl~~Qv~aGAq~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~ 248 (359)
T KOG2872 169 TFTQAKRWLFQYPEVSHALLQILTDAIVEYLVYQVVAGAQALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPELG 248 (359)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 69999999886848999999999999999999999865799999987615379889988604999999999998615404
Q ss_pred ----EEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf ----36024311000013420147872230467799899997-0798469688884677099889999999999973259
Q gi|254780812|r 241 ----KFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSG 315 (346)
Q Consensus 241 ----piI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~ 315 (346)
|+|.|.+|++..++.++. +|+|++|+||.+|+.+|++ +++++++|||+||..|++++|++.+.++++++.++.+
T Consensus 249 ~~~vPmi~fakG~g~~Le~l~~-tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG~~ 327 (359)
T KOG2872 249 LAPVPMILFAKGSGGALEELAQ-TGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDFGKS 327 (359)
T ss_pred CCCCCEEEEECCCCHHHHHHHH-CCCCEEEECCCCCHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 7777669997686068999873-487477520202678998751783477567784765089899999999999983866
Q ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 928960897633668899999999997306
Q gi|254780812|r 316 PFIFNLGHGITPQVDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 316 ~~I~nLGhGi~p~tp~eNv~~~v~~vr~~~ 345 (346)
+||.||||||.|.||+|+|++|+|++|++.
T Consensus 328 ryI~NLGHGi~p~tp~e~v~~f~E~~h~~~ 357 (359)
T KOG2872 328 RYIANLGHGITPGTPPEHVAHFVEAVHKIG 357 (359)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 637624787789979799999999999852
No 6
>pfam01208 URO-D Uroporphyrinogen decarboxylase (URO-D).
Probab=100.00 E-value=0 Score=667.37 Aligned_cols=334 Identities=42% Similarity=0.685 Sum_probs=303.0
Q ss_pred CHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCH
Q ss_conf 60579999966998999976146231234579999976155389984279999998721287629872652133200104
Q gi|254780812|r 3 ERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIAD 82 (346)
Q Consensus 3 ~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~e 82 (346)
++++|+++|++|+++||+|||+|||||||+|||+..+.++ +|.|+|+|||+++|+|+||++|||+|++|+||||++++|
T Consensus 1 t~~er~~~al~g~~~Dr~Pv~~~rqagr~~~~~~~~~~g~-~~~e~~~d~e~~ae~~~~~~~~~g~D~~~~~~di~~~~e 79 (337)
T pfam01208 1 TPNERLLRALRGEPVDRVPVWLMRQAGRYLPEYRALRAGA-SFLEACKDPELAAEVTLQPYRRFGLDAAILFSDILVEAE 79 (337)
T ss_pred CCHHHHHHHHCCCCCCCCCEEECHHCCCCCHHHHHHHCCC-CHHHHHCCHHHHHHHHHHHHHHHCCCEEECCCCEEECHH
T ss_conf 9778999997699899998862010222378999988399-989983799999999999999819765644566022158
Q ss_pred HHCCCEEEECCCCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 32443373168875222-33333554205670123443237877787642102453201111479999999961246776
Q gi|254780812|r 83 ALGRNVRFVENEGPRMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIK 161 (346)
Q Consensus 83 alG~~v~f~~~~GP~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk 161 (346)
|||++|.|.++.||+++ |+.+.++.......+...+++++|+||++++|+++++++|||||+|||||||+||++|
T Consensus 80 alG~~v~~~~~~~P~v~~~~~~~~d~~~l~~~d~~~~~l~~v~eai~~l~~~l~~~~plig~~~gP~Tla~~l~~G---- 155 (337)
T pfam01208 80 AMGCEVDFGEGEGPVVENPIRTPEDVDKLEVPDDEEDRLPYVLEAIRLLRKELGDEVPLIGFVGGPFTLASYLVEG---- 155 (337)
T ss_pred HCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCC----
T ss_conf 6197462169999998887688778986668883011028999999999997599974798647789999999779----
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCE
Q ss_conf 52467753013722289999999999999977777549816784383110068356777612722689999863088623
Q gi|254780812|r 162 DHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAK 241 (346)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vp 241 (346)
+.+.+++++++|+.+|++|+++|+.+++|+++|+++|||+|||||||+++||+++|++|++||+++|++++|+.++. |
T Consensus 156 -~~~~~~~l~~~pe~~~~ll~~~t~~~~~~~~~qi~aGad~i~i~Ds~~~~ls~~~~~ef~~p~~~~i~~~ik~~~~~-~ 233 (337)
T pfam01208 156 -FEKFKKLMYKDPELVHALLDKLTDAVIEYLKAQIEAGADAIQIFDSWAGLLSPEDFREFVLPYLKRIVDEVKARGPG-P 233 (337)
T ss_pred -HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-C
T ss_conf -89999999979999999999999999999999998299679983478887898999999899999999999986899-7
Q ss_pred EECCCCCCC-CCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCC-CCCEE
Q ss_conf 602431100-0013420147872230467799899997079846968888467709988999999999997325-99289
Q gi|254780812|r 242 FISFAKGAG-YMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGS-GPFIF 319 (346)
Q Consensus 242 iI~f~~g~~-~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~-~~~I~ 319 (346)
+|+|+||.+ ..++.+.+ +|++++|+||.+|+.++++..++++||||+||.+|++++|+|+++++++|+.+++ +||||
T Consensus 234 ~ilh~cG~~~~~~~~l~~-~~~~~~s~d~~~~l~~~~~~~~~~~i~GN~dp~~l~gt~e~i~~~~~~~l~~~~~~~g~Il 312 (337)
T pfam01208 234 VILHICGNGTPILEDMAE-TGADVISLDWTVDLAEAKRIVGDVALQGNLDPALLLGTPEEIEAEVKEILEAAGGGRGHIF 312 (337)
T ss_pred EEEEECCCHHHHHHHHHH-CCCCEEECCCCCCHHHHHHHCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 499857966899999986-4988884476568999999769953896898678569999999999999998289999898
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 6089763366889999999999730
Q gi|254780812|r 320 NLGHGITPQVDPKNVLDLVKTVRSE 344 (346)
Q Consensus 320 nLGhGi~p~tp~eNv~~~v~~vr~~ 344 (346)
|+||||+|+||+|||++||++||+|
T Consensus 313 ~~Gc~i~~~tp~env~a~v~avr~~ 337 (337)
T pfam01208 313 NLGHGIPPDTPPENVKALVEAVHEY 337 (337)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 5999899998999999999999609
No 7
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=100.00 E-value=0 Score=649.93 Aligned_cols=308 Identities=22% Similarity=0.315 Sum_probs=272.6
Q ss_pred HHHHCCCCCCCCCCH---------HHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf 999669989999761---------46231234579999976155389984279999998721287629872652133200
Q gi|254780812|r 9 LEVLQGNVINPPPIW---------LMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILV 79 (346)
Q Consensus 9 l~al~g~~~~r~PVW---------~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~ 79 (346)
|||++||++||+||| +|||||||+|||+ +|||+++|+|+||++|||+||||+||||++
T Consensus 1 l~Al~ge~~dR~PVw~~~~~g~~~~mrqaGr~lpEy~-------------~~~e~~ae~~l~p~~~~g~Daai~fsDilv 67 (326)
T cd03307 1 LAALNGQPVDRVPVICPTQTGTVELMEATGAYWPEAH-------------SDAEKMADLAAAGHEVAGFEAVRVPFCMTV 67 (326)
T ss_pred CCCCCCCCCCCCCEECCCCCCHHHHHHHHCCCCHHHH-------------CCHHHHHHHHHHHHHHHCCCEEECCCCHHH
T ss_conf 9300489899999633653328999999389816675-------------699999999970898709986774633212
Q ss_pred CCHHHCCCEEEECCC-CCCC-C-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 104324433731688-7522-2-333335542056701234432378777876421024532011114799999999612
Q gi|254780812|r 80 IADALGRNVRFVENE-GPRM-D-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMIS 156 (346)
Q Consensus 80 ~~ealG~~v~f~~~~-GP~~-~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmie 156 (346)
++||||++|+|.++. +|.+ + |+.+.++....+..+...+++++|++|++++|+++++++|||||+|||||||+||++
T Consensus 68 ~~ealG~~v~f~~~~~~P~v~~~~i~~~~d~~~l~~~~~~~~~l~~v~eai~~lr~~l~~~vpliGf~g~P~Tla~~l~g 147 (326)
T cd03307 68 EAEALGCEVDWGTKDIQPSVTSHPFKKLEDVEKLPDDFLERGRIPTVLEAIKILKEKYGEEVPVIGGMTGPASLASHLAG 147 (326)
T ss_pred HHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHC
T ss_conf 08980982340478889856788889999996177654000125899999999999718997669870768999999757
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH--HCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 4677652467753013722289999999999999977777549816784383110--06835677761272268999986
Q gi|254780812|r 157 GGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG--CLGEHEFENYAARSVGRIISAVR 234 (346)
Q Consensus 157 G~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag--~Ls~~~f~~f~~p~~kkI~~~ik 234 (346)
++++. ++++++|+.+|+||+++|+.+++|+++|+++|||+||||||||| +||+++|++|++||+++|++++|
T Consensus 148 ---~~~~~---~~~~~~p~~~~~lL~~itd~~i~~~~~qi~aGad~i~ifDs~a~~~lls~~~f~ef~~p~~~~i~~~i~ 221 (326)
T cd03307 148 ---VENFL---KWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELH 221 (326)
T ss_pred ---HHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf ---59999---999879999999999999999999999998488878863565653458999999999999999999658
Q ss_pred HHCCCCE-EECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHH-H-CCCHHHHHHHHHHHHH
Q ss_conf 3088623-6024311000013420147872230467799899997-079846968888467-7-0998899999999999
Q gi|254780812|r 235 RKYPNAK-FISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMR-L-VVGNQVMIDGVNAILD 310 (346)
Q Consensus 235 ~~~~~vp-iI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~-L-~~~~e~i~~~~~~~l~ 310 (346)
. +| ++|+|++++..++.+.+ +|+|++|+||++|+++|++ +++++++|||+||.. | .+++|+|+++++++++
T Consensus 222 ~----~~~i~h~~G~~~~~~~~~~~-~g~d~is~D~~~~l~~a~~~~~~~~~iqGNldP~~ll~~g~~e~i~~~~~~~l~ 296 (326)
T cd03307 222 G----CPTILHICGNTTPILEYIAQ-CGFDGISVDEKVDVKTAKEIVGGRAALIGNVSPSQTLLNGTPEDVKAEARKCLE 296 (326)
T ss_pred C----CCEEEEECCCHHHHHHHHHH-CCCCEEECCCCCCHHHHHHHCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9----98278845875889999997-199899668989999999980898169942884898767999999999999997
Q ss_pred HHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 732599289608976336688999999999973
Q gi|254780812|r 311 VLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 311 ~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~ 343 (346)
.+ ++||||||||+|+||+|||++||++||+
T Consensus 297 ~g---~~I~nlGhgi~p~tp~env~a~v~avkE 326 (326)
T cd03307 297 DG---VDILAPGCGIAPRTPLANLKAMVEARKE 326 (326)
T ss_pred CC---CCEEECCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 38---9955898966999899999999998629
No 8
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=100.00 E-value=0 Score=635.89 Aligned_cols=326 Identities=21% Similarity=0.288 Sum_probs=279.1
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEEC
Q ss_conf 97605799999669989999761462312345799999761553899842799999987212876298726521332001
Q gi|254780812|r 1 MNERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVI 80 (346)
Q Consensus 1 M~~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~ 80 (346)
||. ++||++|++||++||+|||+||||| .+|++... . .+|-|.++|||+++|+|+||+++||+|++|+||||+++
T Consensus 3 MT~-~ER~l~al~ge~vDR~Pvw~~~~ag--~~~~m~~~-G-~~~pE~~~~pe~~ae~~l~~~~~~g~D~~~~~~di~~~ 77 (339)
T PRK06252 3 LTP-KERLLRALKGKPVDRVPVICVTQTG--TVELMDIS-G-AYWPEAHSDAEKMAKLAIAGYEVAGFEAVRVPFCMTVE 77 (339)
T ss_pred CCH-HHHHHHHHCCCCCCCCCEECCCCCH--HHHHHHHH-C-CCCHHHHCCHHHHHHHHHHHHHHHCCCEEECHHHHHHH
T ss_conf 985-8999999778989999974354341--89999981-8-87354427999999999727987288734400333334
Q ss_pred CHHHCCCEEEEC-CCCC-CCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 043244337316-8875-222-3333355420567012344323787778764210245320111147999999996124
Q gi|254780812|r 81 ADALGRNVRFVE-NEGP-RMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISG 157 (346)
Q Consensus 81 ~ealG~~v~f~~-~~GP-~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG 157 (346)
+||||++|+|.+ +.+| +.+ |+.+.++....++.+...+++++|++|++++|+++++++|||||+|||||+|+||++
T Consensus 78 ~ealG~~v~f~~~~~~p~v~~~~i~~~~d~~~l~~~~~~~~~l~~v~eai~~lk~~l~~~vpligf~ggP~Tla~yl~g- 156 (339)
T PRK06252 78 AEAMGCTVNMGTKDTQPSVTKHPYKKVEDWEKLPDILLEEGRIPVVLEAIKILKEKVGEDVPIIAGMTGPASLASSLAG- 156 (339)
T ss_pred HHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH-
T ss_conf 9974998775257888988788889999996377677001005999999999999818986179646777999999874-
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH--HCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 677652467753013722289999999999999977777549816784383110--068356777612722689999863
Q gi|254780812|r 158 GFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG--CLGEHEFENYAARSVGRIISAVRR 235 (346)
Q Consensus 158 ~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag--~Ls~~~f~~f~~p~~kkI~~~ik~ 235 (346)
+++|. ++++++|+.+|+||+++|+.+++|+++|+++|||+||||||||| +||+++|++|++||+++|+++++.
T Consensus 157 --~~~~~---~~~~~~pe~~~~ll~~it~~~~~~~~~qi~aGad~i~ifDs~a~~~lls~~~f~ef~~p~~~~i~~~i~~ 231 (339)
T PRK06252 157 --VKNFL---KWLIKKPELAHEFIDFVTEACIEYAKAMLEAGADVIAIADPSASPELIGPEMFEEFVLPYLNKICKEVNG 231 (339)
T ss_pred --HHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf --69999---9998799999999999999999999999982998789715755556769999999989999999997799
Q ss_pred HCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHH-H-CCCHHHHHHHHHHHHHHH
Q ss_conf 0886236024311000013420147872230467799899997-079846968888467-7-099889999999999973
Q gi|254780812|r 236 KYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMR-L-VVGNQVMIDGVNAILDVL 312 (346)
Q Consensus 236 ~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~-L-~~~~e~i~~~~~~~l~~~ 312 (346)
.+++|+|+++++.++.+.+ +|+|++|+||++|+++|++ ++++++||||+||.. | .+++|+|+++++++++.+
T Consensus 232 ----~~ilh~~g~~~~~~~~~~~-~g~d~~s~D~~~~l~~a~~~~g~~~~lqGNldP~~ll~~g~~e~i~~~~~~~l~~g 306 (339)
T PRK06252 232 ----PTILHICGDLTSILEELAD-CGFDGISIDEKVSVKQAKENVGNRARLIGNVSTSFTLLNGTPEDVKAEAKACLEDG 306 (339)
T ss_pred ----CEEEEECCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf ----8188865861378999996-49999971699999999998189917993689778766899999999999999718
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 259928960897633668899999999997306
Q gi|254780812|r 313 GSGPFIFNLGHGITPQVDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 313 ~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~~~ 345 (346)
+ +||||||||+|+||+|||++||++||+|+
T Consensus 307 ~---~I~n~Ghgi~p~tp~env~a~v~avr~y~ 336 (339)
T PRK06252 307 V---DILAPGCGIAPMTPLENIKAMVEARKEYY 336 (339)
T ss_pred C---CEEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9---91689897699989999999999999854
No 9
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=100.00 E-value=0 Score=636.02 Aligned_cols=297 Identities=21% Similarity=0.259 Sum_probs=268.9
Q ss_pred CCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEE-CCCCEECCHHHCCCEEEECCCCCCCC
Q ss_conf 76146231234579999976155389984279999998721287629872652-13320010432443373168875222
Q gi|254780812|r 21 PIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAIL-FSDILVIADALGRNVRFVENEGPRMD 99 (346)
Q Consensus 21 PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIl-FsDIl~~~ealG~~v~f~~~~GP~~~ 99 (346)
|||.||||||| |||+.| ..|.+.|.++++++||||||++|||+||||+ |||||++|+|||++++|.+|+||++.
T Consensus 1 p~~~~~~~~~~--~~~e~~---~~~~~~~~~~~~~~~iTl~p~~rf~~DAaIiffsDIL~ip~AlG~~v~f~~g~GP~~~ 75 (306)
T cd00465 1 PVQCEGQTGIM--EASETM---AISEEPGETSKAEWGITLVEPEEIPLDVIPVHEDDVLKVAQALGEWAFRYYSQAPSVP 75 (306)
T ss_pred CCCHHHHCCCC--CHHHHH---CCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCEECHHHCCCCEEEEECCCCCCC
T ss_conf 92011001555--254543---2677767898654238731510168885665388602187681995479507589899
Q ss_pred CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 33333554205670123443237877787642102453201111479999999961246776524677530137222899
Q gi|254780812|r 100 PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNW 179 (346)
Q Consensus 100 p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ 179 (346)
..... ....++.+|+++++.+|++ .++||||||||||||||||+||+++|+ |+|++|+.+|+
T Consensus 76 ~~~~~----------~~~~~l~~v~~~i~~~~~~--~~vpLIGFaGaPwTla~Ymieg~~sk~------~~~~~pe~~~~ 137 (306)
T cd00465 76 EIDEE----------EDPFREAPALEHITAVRSL--EEFPTAGAAGGPFTFTHHSMSMGDALM------ALYERPEAMHE 137 (306)
T ss_pred CCCCC----------HHHHHHHHHHHHHHHHHHC--CCCCEEEECCCHHHHHHHHHCCCHHHH------HHHHCHHHHHH
T ss_conf 87740----------5666447899999998635--786237645865999999983810899------98879999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH----HCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHH
Q ss_conf 99999999999977777549816784383110----06835677761272268999986308862360243110000134
Q gi|254780812|r 180 LLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG----CLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKN 255 (346)
Q Consensus 180 ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag----~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~ 255 (346)
||+++|+.+++|+++|++||||+||||||||| .|++++|++|++||+++|++..+. +++|+|+|+||.+..+.+
T Consensus 138 LL~~lt~~~i~yl~~Qi~aGAdavqiFDSWag~~~~~L~p~~~~~f~lp~~~~I~~~~~~--~~vPiI~F~~G~~~~~l~ 215 (306)
T cd00465 138 LIEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAA--GEVPIVHHSCYDAADLLE 215 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEECCCHHHHHH
T ss_conf 999999999999999998488999974343342311039999999999999999997457--999889983286677899
Q ss_pred HHCCCCCCEEECCCCC-CHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC--H
Q ss_conf 2014787223046779-9899997-0798469688884677099889999999999973259928960897633668--8
Q gi|254780812|r 256 YRRLTDSNAIGLDWSV-PLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVD--P 331 (346)
Q Consensus 256 ~~~~~g~d~isiD~~~-dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp--~ 331 (346)
++..+|+|++|+||++ |+.++++ ++++++|||||||..|++++|.++++|+++|+.++ .+|||||||||.|+|+ |
T Consensus 216 ~~~~~g~d~i~lD~~~~d~~~a~~~~~~~~~lQGNLDP~~L~~~~e~i~~~v~~il~~~g-~~~IfNLGHGi~P~~d~~p 294 (306)
T cd00465 216 EMIQLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATDEECIAKVEELVERLG-PHYIINPDCGLGPDSDYKP 294 (306)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCCCHHHCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCH
T ss_conf 998619867997367778999999818991587089846765998999999999999848-9877978998899999981
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999973
Q gi|254780812|r 332 KNVLDLVKTVRS 343 (346)
Q Consensus 332 eNv~~~v~~vr~ 343 (346)
|||++||++||+
T Consensus 295 e~v~~~v~~V~e 306 (306)
T cd00465 295 EHLRAVVQLVDE 306 (306)
T ss_pred HHHHHHHHHHCC
T ss_conf 799999998549
No 10
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=100.00 E-value=0 Score=588.17 Aligned_cols=318 Identities=24% Similarity=0.387 Sum_probs=282.5
Q ss_pred HHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCCCEE
Q ss_conf 99669989999761462312345799999761553899842799999987212876298726521332001043244337
Q gi|254780812|r 10 EVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADALGRNVR 89 (346)
Q Consensus 10 ~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~~v~ 89 (346)
.|++|+++||+|||+||||| .+||+.+ +|.|+|+|||+++|+|++|+++|++||+|+||||++++||||++++
T Consensus 2 aAl~g~~~DRvPv~~~~~~~--~~e~~g~-----~~~e~~~d~~~~~e~~~~~~~~~~~D~~~i~~Di~~~~ea~G~~~~ 74 (330)
T cd03465 2 AALNGEKPDRVPVGPLLHGG--AAEFIGI-----SLKEYYTDPELGAEAQIALYKKFGPDAIKVFSDLFVEAEAFGAEIR 74 (330)
T ss_pred HHHCCCCCCCCCEEEECCCC--HHHHHCC-----CHHHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCEEE
T ss_conf 21164999988578866676--5988678-----8988866999999999999998098889705640267998497377
Q ss_pred EECCCCCCCC-CC-CCH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 3168875222-33-333-55420567012344323787778764210245320111147999999996124677652467
Q gi|254780812|r 90 FVENEGPRMD-PI-TTQ-EIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQN 166 (346)
Q Consensus 90 f~~~~GP~~~-p~-~~~-~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~ 166 (346)
|.++.||.+. +. ... +......+.....+++.++++|++++++++++++|+|||+|||||+|+||++ +.+.
T Consensus 75 ~~~~~~P~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~eai~~l~~~~~~~~plig~~ggP~Tla~~l~g------~~~~ 148 (330)
T cd03465 75 YPEDDTPSVEGPLIEDEEEDDDLLPPDPGDSPRLPELLEAIRLLKEELGDRVPVIGAVGGPFTLASLLMG------ASKF 148 (330)
T ss_pred ECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHCC------HHHH
T ss_conf 6799898778888887888863379962255569999999999999728987479755657999887318------4899
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH--HCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC
Q ss_conf 753013722289999999999999977777549816784383110--068356777612722689999863088623602
Q gi|254780812|r 167 RVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG--CLGEHEFENYAARSVGRIISAVRRKYPNAKFIS 244 (346)
Q Consensus 167 ~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag--~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~ 244 (346)
+++++++|+.+|++|+++|+.+++|+++|+++|||+|||||||+| +||+++|++|++||+++|+++++++ +.|+++
T Consensus 149 ~~~l~~~p~~~~~ll~~~t~~~~~~~~~qi~aGad~i~i~d~~a~~~~ls~~~f~~f~~p~~k~i~~~~~~~--~~~~il 226 (330)
T cd03465 149 LMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL--GGPVIH 226 (330)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCEEE
T ss_conf 999997999999999999999999999999639988998356666556999999999899999999997754--998367
Q ss_pred CCC-CCCCCHHHHHCCCCCCEEECCCCCCHHHHHHH-CCCEEEECCCCHH-HH-CCCHHHHHHHHHHHHHHHCC--CCCE
Q ss_conf 431-10000134201478722304677998999970-7984696888846-77-09988999999999997325--9928
Q gi|254780812|r 245 FAK-GAGYMLKNYRRLTDSNAIGLDWSVPLSFALEL-QKEGPVQGNLDPM-RL-VVGNQVMIDGVNAILDVLGS--GPFI 318 (346)
Q Consensus 245 f~~-g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~~-~~~~~lqGNldP~-~L-~~~~e~i~~~~~~~l~~~~~--~~~I 318 (346)
|.| +....++.+.+ ++++++|+||.+|+.++++. ++++++|||+||. +| .+++|+++++++++++.+++ ++||
T Consensus 227 h~~g~~~~~l~~~~~-~~~~~~~~d~~~~l~~~~~~~~~~~~i~Gnldp~~~l~~gt~e~i~~~v~~~l~~~~~~~~g~I 305 (330)
T cd03465 227 HNCGDTAPILELMAD-LGADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYI 305 (330)
T ss_pred ECCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 407862879999986-5888898588899999999809992588179878987579999999999999998537999989
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9608976336688999999999973
Q gi|254780812|r 319 FNLGHGITPQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 319 ~nLGhGi~p~tp~eNv~~~v~~vr~ 343 (346)
||+||||+|+||+|||++||++||+
T Consensus 306 ~~~G~gi~~~tp~env~a~v~avre 330 (330)
T cd03465 306 LSSGCEIPPDTPIENIKAMIDAVRE 330 (330)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 8189987999999999999999629
No 11
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family; InterPro: IPR006360 This entry represents a methyltransferase domain found in proteins which are involved in C1 metabolism in methanogenic archaea and methylotrophic bacteria. It is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (4.1.1.37 from EC). In methanogens, this domain is found in single-domain proteins catalysing the transfer of the methyl group of methylcobalamin to coenzymeM . In Methanosarcina barkeri these proteins have been shown to be involved in methanogenesis from C1 compounds such as methylamine and dimethylsulphide , CH3-cob(III)alamin + coenzymeM --> cob(I)alamin + CH3-coenzymeM In methylotrophic bacteria, this domain is found at the N-terminus of the bifunctional corrinoid-binding CmuA protein, which is involved in chloromethane utilisation. The pathway of chloromethane utilisation allows the microorganisms that possess it to grow with chloromethane as the sole carbon and energy source. It is initiated by a corrinoid-dependent methyltransferase system involving methyltransferase I (CmuA) and methyltransferase II (CmuB), which transfer the methyl group of chloromethane onto tetrahydrofolate . The methyl group of chloromethane is first transferred by the protein CmuA to its corrinoid moiety, from where it is transferred to tetrahydrofolate by CmuB, thereby yielding methyltetrahydrofolate , . CH3Cl + cob(I)alamin ---> CH3-cob(III)alamin + Cl- ; GO: 0008168 methyltransferase activity, 0006730 one-carbon compound metabolic process.
Probab=100.00 E-value=0 Score=418.81 Aligned_cols=321 Identities=20% Similarity=0.299 Sum_probs=280.5
Q ss_pred CCCHHHHHHHHHCCCCCCCCCC---------HHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9760579999966998999976---------1462312345799999761553899842799999987212876298726
Q gi|254780812|r 1 MNERKQKILEVLQGNVINPPPI---------WLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAA 71 (346)
Q Consensus 1 M~~~~~~~l~al~g~~~~r~PV---------W~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~Daa 71 (346)
||. ++||++|+.+++||+.|+ -.||..|.|||| +|. |+|++|.++..+++-+|+||+
T Consensus 3 ~T~-~~Rl~aAv~~~~vD~~p~~~~~~~~~~e~m~~~ga~wp~-------Ah~------d~e~mA~la~a~y~~~G~eav 68 (350)
T TIGR01463 3 MTP-KERLLAAVEGQRVDKVPPCVPTQTLTVELMEECGATWPE-------AHR------DAELMAKLAIAAYEVVGLEAV 68 (350)
T ss_pred CCH-HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCH-------HHC------CHHHHHHHHHHCCCCCCEEEE
T ss_conf 763-469999960798997565310267899999870863423-------205------756419998602402120566
Q ss_pred EECCCCEECCHHHC-CCEEEEC-CCCCCC--CCCCCHHHHHCCCC-C---HHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 52133200104324-4337316-887522--23333355420567-0---123443237877787642102453201111
Q gi|254780812|r 72 ILFSDILVIADALG-RNVRFVE-NEGPRM--DPITTQEIYLLNPN-I---DLFLNYLLPIFQSISILRKKLPNHITLIGF 143 (346)
Q Consensus 72 IlFsDIl~~~ealG-~~v~f~~-~~GP~~--~p~~~~~~~~~~~~-~---~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF 143 (346)
++-.||.++.|+|| |++++.+ +.+|.+ +|...+..+...++ . ....+|.+-|++||+.++++.++++|+||-
T Consensus 69 r~~~Dl~~~~E~~gGC~l~~~~~~~QPSv~~~P~~~~~~~~~~~~~y~reG~~~~ri~~vL~a~~~l~~r~~~~~p~i~~ 148 (350)
T TIGR01463 69 RPPFDLTVEAEVLGGCELDYGKKARQPSVTKSPAPKNLADLEYPENYLREGLKEGRIPVVLEAIKILRERYGDELPIIGS 148 (350)
T ss_pred ECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 32746403103652332367875568870138887785541316776020013475366789999999963886041688
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH--HCCHHHHHHH
Q ss_conf 47999999996124677652467753013722289999999999999977777549816784383110--0683567776
Q gi|254780812|r 144 CGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG--CLGEHEFENY 221 (346)
Q Consensus 144 ~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag--~Ls~~~f~~f 221 (346)
++||||+|+.|+ |+++|. +|+.++||.+++++|..+|+.+.|+++|+++|||++.|.||.|| +|||+.|++|
T Consensus 149 ~~gP~t~A~~~~---~~~~f~---~~~~~~~d~~~~~~e~a~d~~~aya~~m~e~Gadv~~i~DP~aS~dL~~petY~~F 222 (350)
T TIGR01463 149 MEGPFTLAQDLI---GVEEFL---KWISTDPDLAKAVLELALDFVIAYAKAMVEAGADVIAIADPVASSDLISPETYKEF 222 (350)
T ss_pred CCCHHHHHHHHH---CHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHH
T ss_conf 866466776640---458886---30368645799999998899999999888725204311576667000571456863
Q ss_pred HCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCC-HHHHHH-HCCCEEEECCCCHHH--HCC-
Q ss_conf 127226899998630886236024311000013420147872230467799-899997-079846968888467--709-
Q gi|254780812|r 222 AARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVP-LSFALE-LQKEGPVQGNLDPMR--LVV- 296 (346)
Q Consensus 222 ~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~d-l~~a~~-~~~~~~lqGNldP~~--L~~- 296 (346)
++||.||+++++|+-. .+-+.|.|+.++..|.+|.+ +|++++|+|..++ ...+++ +++++.|.|||||.. +.|
T Consensus 223 ~lp~~kr~~~~~KEi~-~~~~lHiCg~t~~~L~~i~~-~G~~~~s~d~~~g~~~~~~~v~G~~~~l~G~L~~~~~l~~GW 300 (350)
T TIGR01463 223 VLPYQKRLVAEIKEID-GITVLHICGKTQKILRDIAK-SGVEGFSVDEKPGIVAEAKKVIGDEASLVGNLDPVSTLLNGW 300 (350)
T ss_pred CCHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHH-CCCCCCCCCCCCCHHHHCCHHCCCEEEEEECCCHHHHCCCCC
T ss_conf 1417888987621126-86688403771456788986-488743255656677761120387269975367587537888
Q ss_pred ---CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf ---98899999999999732599289608976336688999999999973069
Q gi|254780812|r 297 ---GNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSEKI 346 (346)
Q Consensus 297 ---~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~~~~ 346 (346)
++|+|++.+++++..+.+ |+..||||.+.||.||++++|++.+|++.
T Consensus 301 ttd~~~~v~~~a~~~~~~G~~---iv~~GCdi~~~tp~eNLka~v~a~~~~~~ 350 (350)
T TIGR01463 301 TTDTPEKVKKLAKEVLENGVD---IVAPGCDISFMTPLENLKAMVEACKEIKY 350 (350)
T ss_pred CCCCHHHHHHHHHHHHHCCCE---EEECCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 668578999999999876972---88604777548855899999999731589
No 12
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=100.00 E-value=2.7e-44 Score=332.00 Aligned_cols=328 Identities=16% Similarity=0.179 Sum_probs=242.9
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEEC
Q ss_conf 97605799999669989999761462312345799999761553899842799999987212876298726521332001
Q gi|254780812|r 1 MNERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVI 80 (346)
Q Consensus 1 M~~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~ 80 (346)
+.++.+|+..|++|+++||.||-.|= |-+.+.| ..+ ++.|+.+||++++|......++|++|++.++.+.-..
T Consensus 2 ~~Er~eR~~~a~~g~~pDRVPv~~~~--~~~~~~~----~G~-~~~e~~~d~~k~aea~~k~~~~f~~D~~~~~~~l~~~ 74 (378)
T cd03308 2 YQERVQRLKDAIEGKKPDRVPILSQF--TEWFIQY----AGM-TLKEAQWDTDKLEEAYDKVLKDFDFDITPGSASLRPP 74 (378)
T ss_pred CHHHHHHHHHHHCCCCCCCEEEECCC--HHHHHHH----CCC-CHHHHCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHH
T ss_conf 17899999999769999724020110--0677877----585-2999806999999999999985387515304442307
Q ss_pred C--HHHCCCEEEECCCC----CCCCCCCC-HHHHHCCCCCHH---------H--------HHHHHHHHHHH---------
Q ss_conf 0--43244337316887----52223333-355420567012---------3--------44323787778---------
Q gi|254780812|r 81 A--DALGRNVRFVENEG----PRMDPITT-QEIYLLNPNIDL---------F--------LNYLLPIFQSI--------- 127 (346)
Q Consensus 81 ~--ealG~~v~f~~~~G----P~~~p~~~-~~~~~~~~~~~~---------~--------~~~l~~v~eAi--------- 127 (346)
+ ||||.++.+.++.+ |...++.. ++.+.+..+.-. . .++.....++.
T Consensus 75 ~~~ealG~k~~~~~~~~~~~~~~~~~~m~~deyd~li~dP~~~~~~~~lpr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (378)
T cd03308 75 SFYQALGSKNFKMSSGGFLQHPEVYEYMEADEYDEFIADPYDFIVEKILPRIYKELAEDPAEKSLALAKAAAAFVDYNNT 154 (378)
T ss_pred HHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89997057331168887677862001247566645302877752010010455540566312249999999998764103
Q ss_pred ------HHHHHCCCCCCHHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf ------764210245320111147999-9999961246776524677530137222899999999999999777775498
Q gi|254780812|r 128 ------SILRKKLPNHITLIGFCGAPW-TVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGV 200 (346)
Q Consensus 128 ------~~~k~~l~~~~pLIGF~GgP~-TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGa 200 (346)
++.+++++..+++-||+.||| |+++++. | +......++++||.+|++++.+|+..++|+.+|+.++.
T Consensus 155 ~~~~~~~i~~~~~G~~~~~~~~~~~Pf~tla~~LR---G---~~~~~~Dl~r~Pe~V~~a~e~it~~~i~~~~~~~~~~~ 228 (378)
T cd03308 155 NGPIGAKLAEKEYGTPLNAGGVSEAPFDIIGDYLR---G---FKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPY 228 (378)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHH---H---HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 57899999887608753446524166888999997---6---89999999979899999999999999999975321357
Q ss_pred C-EEEECC--CCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCC-CEEECCCCCCHHHH
Q ss_conf 1-678438--3110068356777612722689999863088623602431100001342014787-22304677998999
Q gi|254780812|r 201 D-VIQIFD--THAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDS-NAIGLDWSVPLSFA 276 (346)
Q Consensus 201 d-~iqIFD--s~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~-d~isiD~~~dl~~a 276 (346)
+ .+.+++ +.++.|||++|++|++||+||+++++++++ ..+.+|+|++.+..++.+.++... ...++| ..|+.++
T Consensus 229 ~~~~~~~~p~~~~~~ispkqfeeF~~Pylkkl~~~i~~~G-~~~~lh~~G~~~~~~e~l~elp~~~~~~~~~-~~D~~ea 306 (378)
T cd03308 229 PGPVFTPIPLHLPPFLRPKQFEKFYWPSFKKVVEGLAARG-QRIFLFFEGDWERYLEYLQELPKGKTVGLFE-YGDPKKV 306 (378)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHCCCCCEEEECC-CCCHHHH
T ss_conf 8615740555554558999988862065999999999669-8059996687077999998523576243148-8999999
Q ss_pred HH-HCCCEEEECCCCHHHH-CCCHHHHHHHHHHHHHHHC-CCCCEEEECCCC--CCCCCHHHHHHHHHHHHH
Q ss_conf 97-0798469688884677-0998899999999999732-599289608976--336688999999999973
Q gi|254780812|r 277 LE-LQKEGPVQGNLDPMRL-VVGNQVMIDGVNAILDVLG-SGPFIFNLGHGI--TPQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 277 ~~-~~~~~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~-~~~~I~nLGhGi--~p~tp~eNv~~~v~~vr~ 343 (346)
++ +++++||+||+.|..| +|++|+|.++++++|+..+ ++|||++.||+| +.++|+|||+|+++++|+
T Consensus 307 Ke~lGd~~~I~GnvP~~~L~~GTpeeV~~~~k~~id~~~~~gGfIl~~gc~i~~p~~~~~ENi~A~~ea~re 378 (378)
T cd03308 307 KEKLGDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDAKPENLIAVIEFVRE 378 (378)
T ss_pred HHHHCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 998599489987998799710999999999999999728999889708976558999987999999998609
No 13
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=99.62 E-value=7.1e-14 Score=118.32 Aligned_cols=192 Identities=15% Similarity=0.184 Sum_probs=157.6
Q ss_pred HHHHHH-HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEECCCCHH----H
Q ss_conf 011114-799999999612467765246775301372228999999999999997777754-9816784383110----0
Q gi|254780812|r 139 TLIGFC-GAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA-GVDVIQIFDTHAG----C 212 (346)
Q Consensus 139 pLIGF~-GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a-Gad~iqIFDs~ag----~ 212 (346)
-+.+|+ +|+|+-+.++.+ ++.....++++||..|+|++.+|+..+++.+.++++ -.|++...|-|++ .
T Consensus 113 ~i~~~~~~g~fe~~~~~~~------~e~al~~l~~epea~~el~d~~~d~~l~~~~~~i~~l~pD~i~~hDD~G~q~~~f 186 (321)
T cd03309 113 VIDVPLPGGVFERFRLRMS------MEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSF 186 (321)
T ss_pred EECCCCCCCHHHHHHHHCC------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 6615679873999998623------9999999985869999999899998768999999851998798526344556752
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC-CCCHHHHHCCCCCCEEECCCCC-CHHHHHH-HCCCEEEECCC
Q ss_conf 6835677761272268999986308862360243110-0001342014787223046779-9899997-07984696888
Q gi|254780812|r 213 LGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA-GYMLKNYRRLTDSNAIGLDWSV-PLSFALE-LQKEGPVQGNL 289 (346)
Q Consensus 213 Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~-~~~l~~~~~~~g~d~isiD~~~-dl~~a~~-~~~~~~lqGNl 289 (346)
+||++|++|.+|++|||++.+|+.+ +.++.||+||. -..+++|++ .|+|+..++... ++.+.++ ++++++++|.+
T Consensus 187 ~Sp~~fr~fi~P~~kri~~~~rs~~-~~~i~~Hscg~a~~lv~~m~e-mGvd~~n~~~~~n~~~~l~~~~g~ki~~~g~~ 264 (321)
T cd03309 187 ISPATFREFILPRMQRIFDFLRSNT-SALIVHHSCGAAASLVPSMAE-MGVDSWNVVMTANNTAELRRLLGDKVVLAGAI 264 (321)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHH-HCHHHHHHHHHCCCHHHHHHHCCCCEEEECCC
T ss_conf 6989999986088999999999616-836888621548887699998-56698852111243999999748746997341
Q ss_pred CHHHH-CCCH-HHHHHHHHHHHHHHCC-CCCEEEECCCCCCCCCHHHHHHHH
Q ss_conf 84677-0998-8999999999997325-992896089763366889999999
Q gi|254780812|r 290 DPMRL-VVGN-QVMIDGVNAILDVLGS-GPFIFNLGHGITPQVDPKNVLDLV 338 (346)
Q Consensus 290 dP~~L-~~~~-e~i~~~~~~~l~~~~~-~~~I~nLGhGi~p~tp~eNv~~~v 338 (346)
|-..| +.++ |+..+.+.+....... +++|...--|.+-.+-++-++..-
T Consensus 265 d~~~ld~~~~~e~~~~~v~~~~~e~~~~~~~I~~~t~~~p~~~~~~~~~~~s 316 (321)
T cd03309 265 DDVALDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLPFSIFPEVLRRVS 316 (321)
T ss_pred CHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 0433077766166799999999973578603433235787655768999877
No 14
>PRK00957 methionine synthase; Provisional
Probab=98.63 E-value=1.7e-06 Score=66.55 Aligned_cols=189 Identities=16% Similarity=0.149 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHH
Q ss_conf 32011114799999999612467765246775301372228999999999999997777754981678438311006835
Q gi|254780812|r 137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEH 216 (346)
Q Consensus 137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~ 216 (346)
+.++=+..-||.|++..+.- ..+ .|.+. .-.+++.-++.+..+-+++..++|++.|||=|+.-..- -
T Consensus 108 ~~~vK~~l~gP~tl~~~~~~---~~~-------~Y~d~-~~ee~~~dla~al~~Ei~~l~~aG~~~IQiDEP~l~~~--~ 174 (307)
T PRK00957 108 EKGVKGIITGPSTLAYSLRI---ETN-------FYSDN-KDEELIYDLARALAKEALALQKAGAAMIQIDEPILSTG--A 174 (307)
T ss_pred CCCEEEEECCHHHHHHHHCC---CCC-------CCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCC--C
T ss_conf 88667897877999988712---455-------67873-38999999999999999999974998899675577638--0
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCCCCHHHHHCCCCCCEEECCCC---CCHHHHHH--HCCCEEEECCCC
Q ss_conf 67776127226899998630886236-0243110000134201478722304677---99899997--079846968888
Q gi|254780812|r 217 EFENYAARSVGRIISAVRRKYPNAKF-ISFAKGAGYMLKNYRRLTDSNAIGLDWS---VPLSFALE--LQKEGPVQGNLD 290 (346)
Q Consensus 217 ~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~~~l~~~~~~~g~d~isiD~~---~dl~~a~~--~~~~~~lqGNld 290 (346)
...+++..+++.+.+.+ ++++ +|.|++-...++.+.+ .++|+++++.. .+++...+ ..++.+.-|=+|
T Consensus 175 ~~~~~~~~~i~~~~~~~-----~~~~~~HiCg~y~~i~~~l~~-~~vd~~~lE~a~~~~~l~~l~~~~~~~k~i~lGvid 248 (307)
T PRK00957 175 YDLEVAKKAIDIIAKGL-----NIPVAMHVCGDVGNIFDDLLK-FNVDILDHEFAGNKENLEVLEEKDLIGKKIGFGCVD 248 (307)
T ss_pred CHHHHHHHHHHHHHCCC-----CCEEEEEECCCHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEE
T ss_conf 13899999999974146-----745999966773777889985-899989997079944388887640589859986785
Q ss_pred HHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC---CCCHHHHHHHHHHHHHC
Q ss_conf 4677-099889999999999973259928960897633---66889999999999730
Q gi|254780812|r 291 PMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITP---QVDPKNVLDLVKTVRSE 344 (346)
Q Consensus 291 P~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p---~tp~eNv~~~v~~vr~~ 344 (346)
...- ..++|+|++..++.++......-+.|..||.-. +.--+++++|+++++.-
T Consensus 249 ~~s~~vE~~eeV~~rI~~a~~~v~~e~l~~~pDCGf~~l~~~~a~~KL~~lv~~A~~v 306 (307)
T PRK00957 249 TKLKSVESVDEVKALIEKGIEILGNNNIIIDPDCGMRMLPRDVAFAKLKNMVEAADEV 306 (307)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7899999999999999999973887659985899998388899999999999999984
No 15
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=98.55 E-value=2.2e-06 Score=65.76 Aligned_cols=190 Identities=16% Similarity=0.056 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHH
Q ss_conf 20111147999999996124677652467753013722289999999999999977777549816784383110068356
Q gi|254780812|r 138 ITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHE 217 (346)
Q Consensus 138 ~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~ 217 (346)
+|+=.-+.||.|+++.+. +... ..|.+ ..+++.-+.++..+-++...++||+.|||=||.-....+..
T Consensus 119 ~~vK~~l~gp~ti~~~s~------~~~~---~~Y~~---~ee~~~dlA~~~~~Ei~~L~~aG~~~IQiDeP~l~~~~~~~ 186 (332)
T cd03311 119 KPLKGILTGPVTIPSPSF------VRFR---GYYPS---REELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLE 186 (332)
T ss_pred CHHCCCCCCCEECCCCCH------HHHC---CCCCC---HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCC
T ss_conf 012024788722146313------4421---46999---99999999999999999999879988995283575267844
Q ss_pred HHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCC-----------CCHHHHHCCCCCCEEECCCCC----CHHHHHHHC-
Q ss_conf 7776127226899998630886236-02431100-----------001342014787223046779----989999707-
Q gi|254780812|r 218 FENYAARSVGRIISAVRRKYPNAKF-ISFAKGAG-----------YMLKNYRRLTDSNAIGLDWSV----PLSFALELQ- 280 (346)
Q Consensus 218 f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~-----------~~l~~~~~~~g~d~isiD~~~----dl~~a~~~~- 280 (346)
+++....|.+.+.+.+++...++.+ +|.|+|+. ..++.+.+ ..+|+++++... +++..+++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~v~~HvC~Gn~~~~~~~~~~y~~i~~~l~~-~~vd~~~lE~~~~r~~~~~~l~~~~~ 265 (332)
T cd03311 187 PDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFE-LDVDVFFLEYDNSRAGGLEPLKELPY 265 (332)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHCCC
T ss_conf 26899999999999985389886899987678877765455627899999971-89988999836887410189984899
Q ss_pred CCEEEECCCCHHH-HCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC---CHHHHHHHHHH
Q ss_conf 9846968888467-709988999999999997325992896089763366---88999999999
Q gi|254780812|r 281 KEGPVQGNLDPMR-LVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQV---DPKNVLDLVKT 340 (346)
Q Consensus 281 ~~~~lqGNldP~~-L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~t---p~eNv~~~v~~ 340 (346)
++.+.-|=+|+.. -+.++|+|.+.+++.++......-+.|..||...-+ .....+.+++.
T Consensus 266 ~k~v~lGvid~~~~~vE~~eev~~rI~~a~~~v~~e~l~~~pdCGf~~~~~~~a~~kl~~~~~~ 329 (332)
T cd03311 266 DKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLEQLWVSPDCGFATRERGNALTKLENMVKA 329 (332)
T ss_pred CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9879866882799998999999999999997389988898688898828721789999999985
No 16
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=98.51 E-value=6.5e-06 Score=62.44 Aligned_cols=188 Identities=15% Similarity=0.124 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHH
Q ss_conf 32011114799999999612467765246775301372228999999999999997777754981678438311006835
Q gi|254780812|r 137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEH 216 (346)
Q Consensus 137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~ 216 (346)
..|+=+-+-||+|++..+... +..+.....+.+-+.+....-++...++|+..|||=||.-..-+..
T Consensus 115 ~~~vK~~i~GP~t~~~~~~~~-------------~~~~~~~~~l~~~la~~~~~e~~~l~~~g~~~iqiDEP~l~~~~~~ 181 (321)
T cd03310 115 ALKVKVVVTGPLTLALLAFLP-------------NGEPDAYEDLAKSLAEFLREQVKELKNRGIVVVQIDEPSLGAVGAG 181 (321)
T ss_pred CCCCEEEEECHHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCC
T ss_conf 777306981799999765177-------------7887569999999999999999999974998899658466416742
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCCCCHHHHHCCCCCCEEECCCCC-------CHHHHHHHC--CCEEEE
Q ss_conf 67776127226899998630886236-02431100001342014787223046779-------989999707--984696
Q gi|254780812|r 217 EFENYAARSVGRIISAVRRKYPNAKF-ISFAKGAGYMLKNYRRLTDSNAIGLDWSV-------PLSFALELQ--KEGPVQ 286 (346)
Q Consensus 217 ~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~~~l~~~~~~~g~d~isiD~~~-------dl~~a~~~~--~~~~lq 286 (346)
.+. ...+..++++...... ++++ +|.|.+ ..+..+.+ .++|++++|... ++....+.+ ....--
T Consensus 182 ~~~--~~~~~~~~~~~~~~~~-~~~~~vH~C~~--~~~~~l~~-~~~d~l~~d~~~~~~~~~e~l~~~~~~~~~~~~~g~ 255 (321)
T cd03310 182 AFE--DLEIVDAALEEVSLKS-GGDVEVHLCAP--LDYEALLE-LGVDVIGFDAAALPSKYLEDLKKLLRIGVRTLILGL 255 (321)
T ss_pred CHH--HHHHHHHHHHHHCCCC-CCCEEEEEECC--CCHHHHHH-CCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 122--6999999999715567-98679998059--88999985-799716887544764125679998860677743898
Q ss_pred CCCCHHHHCCCHHHHHHHHHHHHHHHCC------CCCEEEECCCCCCCC---CHHHHHHHHHHHHH
Q ss_conf 8888467709988999999999997325------992896089763366---88999999999973
Q gi|254780812|r 287 GNLDPMRLVVGNQVMIDGVNAILDVLGS------GPFIFNLGHGITPQV---DPKNVLDLVKTVRS 343 (346)
Q Consensus 287 GNldP~~L~~~~e~i~~~~~~~l~~~~~------~~~I~nLGhGi~p~t---p~eNv~~~v~~vr~ 343 (346)
|.+|+..-..+..+..+.+.++++..+. ..-+.+..||+-.-+ =.+.++.|++++|+
T Consensus 256 g~~d~~~~~~~~~~~~e~i~~~~~~l~~~~~~~~e~l~v~PdCGl~~l~~~~A~~kL~~l~~aar~ 321 (321)
T cd03310 256 VVTDNEAKGRNAWKEIERLEKLVRRLEEPGEVLDEILYLTPDCGLAFLPPQEARRKLALLAEAARE 321 (321)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 976078788886788889999999741101486402998089889979989999999999999677
No 17
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=98.50 E-value=3.4e-06 Score=64.45 Aligned_cols=179 Identities=15% Similarity=0.205 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHC
Q ss_conf 47999999996124677652467753013722289999999999999977777549816784383110068356777612
Q gi|254780812|r 144 CGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAA 223 (346)
Q Consensus 144 ~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~ 223 (346)
+-||.|++.-+- .. -|.+. ..++.-+.++..+-+++..++|++.|||=|+.-..+ ++...+|..
T Consensus 129 ipgP~tl~~~~~-----~~-------~Y~d~---~~~~~dla~a~~~Ei~~L~~aG~~~IQiDeP~~~~~-~de~~~~~v 192 (339)
T PRK09121 129 LPGPMTMIDTLY-----DD-------HYKSR---EKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVF-FDEVNDWGV 192 (339)
T ss_pred CCCCEEEEHHHC-----CC-------CCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHC-HHHHHHHHH
T ss_conf 565232000112-----11-------13999---999999999999999999987999898465676515-788899999
Q ss_pred CCHHHHHHHHHHHCCCCEEECCCCC-------C------------CCCHHHHHCCCCCCEEECC---CCCCHHHHHHHCC
Q ss_conf 7226899998630886236024311-------0------------0001342014787223046---7799899997079
Q gi|254780812|r 224 RSVGRIISAVRRKYPNAKFISFAKG-------A------------GYMLKNYRRLTDSNAIGLD---WSVPLSFALELQK 281 (346)
Q Consensus 224 p~~kkI~~~ik~~~~~vpiI~f~~g-------~------------~~~l~~~~~~~g~d~isiD---~~~dl~~a~~~~~ 281 (346)
..+++.++.+.. --.+|.|+| . ...++.+.+ .++|++++. .+.+++......+
T Consensus 193 ~~l~~a~~gl~~----~~~~HiC~G~~~~~~~~~~~~~~~~~~~y~~i~~~l~~-~~vd~~~lE~~~~r~~~~~l~~~~~ 267 (339)
T PRK09121 193 AALERAIEGLKC----ETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQK-SNIDIISLECHNSHVPMDLLELIRG 267 (339)
T ss_pred HHHHHHHCCCCC----CEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHCCC
T ss_conf 999998558986----71899648988888765322357535658999999986-6898899963799983568873478
Q ss_pred CEEEECCCCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC---HHHHHHHHHHHHH
Q ss_conf 8469688884677-099889999999999973259928960897633668---8999999999973
Q gi|254780812|r 282 EGPVQGNLDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVD---PKNVLDLVKTVRS 343 (346)
Q Consensus 282 ~~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp---~eNv~~~v~~vr~ 343 (346)
+.++-|=+|...- +.++|+|++..++.++-.....-+.|..||..+-+. -+++++|+++.+.
T Consensus 268 k~v~lGvid~~~~~vE~~e~V~~Ri~~a~~~v~~erl~~spDCGf~~l~r~iA~~KL~~mvega~~ 333 (339)
T PRK09121 268 KKVMVGAIDVASDTIETPEEVADTLRKALQFVDADKLYPCTNCGMAPLSREVARGKLNALSAGAEI 333 (339)
T ss_pred CEEEECCEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 868745177889999999999999999998389889898789899849859999999999999999
No 18
>PRK04326 methionine synthase; Provisional
Probab=98.48 E-value=5.6e-06 Score=62.91 Aligned_cols=177 Identities=16% Similarity=0.206 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHC
Q ss_conf 47999999996124677652467753013722289999999999999977777549816784383110068356777612
Q gi|254780812|r 144 CGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAA 223 (346)
Q Consensus 144 ~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~ 223 (346)
+-||.|++..... . -|.+. .+++.-++++...-+++..++||+.|||=|+.-.. .+++ -++..
T Consensus 134 ipgP~t~~~~~~~-----~-------~Y~~~---ee~~~dla~a~~~Ei~~L~~aG~~~IQiDeP~l~~-~~~~-~~~~~ 196 (330)
T PRK04326 134 ITGPYTIAEWSFN-----E-------YYDDK---RELAFDLAKVINKEIKNLVEAGARYIQIDEPALHT-HPEE-VEIAK 196 (330)
T ss_pred ECCHHHHHHHHCC-----C-------CCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHC-CHHH-HHHHH
T ss_conf 4898998742044-----3-------37999---99999999999999999998799899965852003-9889-99999
Q ss_pred CCHHHHHHHHHHHCCCCE-EECCCCCCCC-CHHHHHCCCCCCEEECCCCC----CHHHHHHHC-CCEEEECCCCHHHH-C
Q ss_conf 722689999863088623-6024311000-01342014787223046779----989999707-98469688884677-0
Q gi|254780812|r 224 RSVGRIISAVRRKYPNAK-FISFAKGAGY-MLKNYRRLTDSNAIGLDWSV----PLSFALELQ-KEGPVQGNLDPMRL-V 295 (346)
Q Consensus 224 p~~kkI~~~ik~~~~~vp-iI~f~~g~~~-~l~~~~~~~g~d~isiD~~~----dl~~a~~~~-~~~~lqGNldP~~L-~ 295 (346)
..+++.++.+ +.. .+|.|+|+-. .++.+.+ ..+|++++++.. +++..++.. ++.+.-|=+|...- +
T Consensus 197 ea~n~~~~~~-----~~~i~~HiC~Gny~~i~~~l~~-~~vd~~~lE~~~~~~~~l~~l~~~~~~k~v~~Gvvd~k~~~l 270 (330)
T PRK04326 197 EALNIIVKGI-----DVKLGLHVCYGDYSRLAPYILE-FPVDQFDLEFKNYNFKLLDLLKEYGFEKELGVGVIDVHSPRV 270 (330)
T ss_pred HHHHHHHCCC-----CCEEEEEECCCCHHHHHHHHHH-CCCCEEEHHHHCCCCHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf 9999972789-----9779999547766889999970-998888675407983666888846999848873672689998
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC---HHHHHHHHHHHHH
Q ss_conf 99889999999999973259928960897633668---8999999999973
Q gi|254780812|r 296 VGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVD---PKNVLDLVKTVRS 343 (346)
Q Consensus 296 ~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp---~eNv~~~v~~vr~ 343 (346)
.++|+|++.+.+.++......-++|..||.-.-++ -+++++++++++.
T Consensus 271 E~~e~i~~ri~~a~~~v~~erl~lspdCGf~~l~~~~a~~KL~~lv~~a~~ 321 (330)
T PRK04326 271 ESVEEIKEAIKKLLEYFPPEKVYINPDCGLKLLPREIAYQKLVNMVKATRE 321 (330)
T ss_pred CCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999997389777998589999829989999999999999999
No 19
>pfam01717 Meth_synt_2 Cobalamin-independent synthase, Catalytic domain. This is a family of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, EC:2.1.1.14 from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length. This domain contains the catalytic residues of the enzyme.
Probab=98.47 E-value=5.4e-06 Score=62.98 Aligned_cols=187 Identities=14% Similarity=0.099 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH-HH---
Q ss_conf 32011114799999999612467765246775301372228999999999999997777754981678438311-00---
Q gi|254780812|r 137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHA-GC--- 212 (346)
Q Consensus 137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~a-g~--- 212 (346)
+.++-+.+-||.|++.... +. -|.+ ..+++.-++++..+-++...++||..|||=||.- ..
T Consensus 120 ~~~~K~~i~gP~t~~~~~~------~~------~Y~~---~~~~~~dla~a~~~ei~~l~~aG~~~iQiDeP~l~~~~~~ 184 (324)
T pfam01717 120 DKPVKGMLTGPVTILNWSF------VR------DDQD---REAQAMQIALALRDEVKDLEAAGILVIQIDEPALREGLPL 184 (324)
T ss_pred CCCHHHHCCCCHHHHCCCC------CC------CCCC---HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCC
T ss_conf 7430120478635440456------65------7999---9999999999999999999987998899757788636644
Q ss_pred --CCHHHHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCCC-CHHHHHCCCCCCEEECCCCC----CHHHHHHHC-CCE
Q ss_conf --683567776127226899998630886236-024311000-01342014787223046779----989999707-984
Q gi|254780812|r 213 --LGEHEFENYAARSVGRIISAVRRKYPNAKF-ISFAKGAGY-MLKNYRRLTDSNAIGLDWSV----PLSFALELQ-KEG 283 (346)
Q Consensus 213 --Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~~-~l~~~~~~~g~d~isiD~~~----dl~~a~~~~-~~~ 283 (346)
..++.+.++. +....-......++..+ +|.|+|+.. .++.+.+ .++|++++++.. +++-.+++. ++.
T Consensus 185 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~H~C~gny~~i~~~l~~-~~vd~~~lE~~~~~~~~~~~l~~~~~~k~ 260 (324)
T pfam01717 185 KKLDWAAYLDWA---VAAFRLDTIVAALDTQVHTHVCYSDFNDILDAIDA-LDVDVLTIEFARSDMENLEALEEWGYGKG 260 (324)
T ss_pred CCCCHHHHHHHH---HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHCCCCCE
T ss_conf 334989999999---99999871678999889999668884999999974-89888981116898114588884799984
Q ss_pred EEECCCCHHH-HCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH---HHHHHHHHHHH
Q ss_conf 6968888467-70998899999999999732599289608976336688---99999999997
Q gi|254780812|r 284 PVQGNLDPMR-LVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDP---KNVLDLVKTVR 342 (346)
Q Consensus 284 ~lqGNldP~~-L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~---eNv~~~v~~vr 342 (346)
++-|=+|... -+.++|+|++.+++..+-.....-+.|.-||...-|.. ++++++|+++|
T Consensus 261 v~lGvVd~k~~~lE~~e~v~~rI~~aa~~v~~erL~~spdCGf~~l~~e~a~~KL~~~ve~a~ 323 (324)
T pfam01717 261 VGFGVVDIHSPRVPSVEEIKALIKKALDIVPADRLWVNPDCGLKTRPWEEARAALRNMVDAAK 323 (324)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 998888178999899999999999999848988899878889884988999999999999856
No 20
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=98.17 E-value=9.7e-05 Score=54.19 Aligned_cols=209 Identities=12% Similarity=0.051 Sum_probs=123.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 877787642102453201111-4799999999612467765246775301372228999999999999997777754981
Q gi|254780812|r 123 IFQSISILRKKLPNHITLIGF-CGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVD 201 (346)
Q Consensus 123 v~eAi~~~k~~l~~~~pLIGF-~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad 201 (346)
+.+..+.+++..+ .|...+ +.||.++..-+ +...... -.|.+. .++++-++++..+-++...+||++
T Consensus 118 ~~~~~~~l~~~t~--~~~~K~tipsP~~l~~~~----~~~~~~~---~~Y~~~---~~~~~dlA~a~~~Ei~~L~~aG~~ 185 (370)
T PRK06520 118 MLDHFRFLKSHAG--DATPKMTIPSPSVLHFRG----GRKAIDA---EVYPDL---DAFFDDLAKTYRDAVKAFYDAGCR 185 (370)
T ss_pred HHHHHHHHHHHCC--CCCCCEEECCHHHHHHCC----CCCCCCH---HCCCCH---HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 4999999997469--999847869279983305----5222421---107999---999999999999999999987998
Q ss_pred EEEECCC-CHHHCCHHHH----------HHHHCCCHHHHHHHHHHHCCCCE-EECCCCCCCC-----------CHHHHHC
Q ss_conf 6784383-1100683567----------77612722689999863088623-6024311000-----------0134201
Q gi|254780812|r 202 VIQIFDT-HAGCLGEHEF----------ENYAARSVGRIISAVRRKYPNAK-FISFAKGAGY-----------MLKNYRR 258 (346)
Q Consensus 202 ~iqIFDs-~ag~Ls~~~f----------~~f~~p~~kkI~~~ik~~~~~vp-iI~f~~g~~~-----------~l~~~~~ 258 (346)
.|||=|+ ||-+.++... +++..-|++-+-..+...-.++. .+|.|+|+.. ..+.+..
T Consensus 186 ~IQiDep~~a~l~~~~~~~~~~~~~~~~~~l~~~~~~~~N~al~~~p~d~~i~~HiC~Gn~~~~~~~~g~Y~~i~~~l~~ 265 (370)
T PRK06520 186 YLQLDDTVWAYLCSDDERQQARERGDDPDNLQQIYARVINYAIAERPADLTITLHVCRGNFRSTWISEGGYEPVAETLLG 265 (370)
T ss_pred EEEECCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 89875741653068777867765368999999999999999970899774899987678878776556664667999984
Q ss_pred CCCCCEEECCCCCC----HHHHHHH--CCCEEEECCCCHHH-HCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC----
Q ss_conf 47872230467799----8999970--79846968888467-7099889999999999973259928960897633----
Q gi|254780812|r 259 LTDSNAIGLDWSVP----LSFALEL--QKEGPVQGNLDPMR-LVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITP---- 327 (346)
Q Consensus 259 ~~g~d~isiD~~~d----l~~a~~~--~~~~~lqGNldP~~-L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p---- 327 (346)
..++|++++.+... ++..+.+ +++.++-|=+|... -+.++|+|++..++.++-......+.|..||...
T Consensus 266 ~~~vd~~~lE~d~~r~g~~e~L~~l~~~~k~vvlGvid~~~~~vE~~eev~~RI~~A~~~vp~erl~~spdCGFas~~~g 345 (370)
T PRK06520 266 GVNVDAYFLEYDNERAGGFEPLRFLPKGNKQVVLGLITSKNGELENKDDVKRRLEEAAKFVPLEQLCLSPQCGFASTEEG 345 (370)
T ss_pred HCCCCEEEEEECCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCCC
T ss_conf 37888589984475445422677568678779986783799999999999999999996179999888788898760238
Q ss_pred -----CCCHHHHHHHHHHHHH
Q ss_conf -----6688999999999973
Q gi|254780812|r 328 -----QVDPKNVLDLVKTVRS 343 (346)
Q Consensus 328 -----~tp~eNv~~~v~~vr~ 343 (346)
+.--++++.+++.+++
T Consensus 346 ~~lt~e~~w~KL~~~~e~A~~ 366 (370)
T PRK06520 346 NSLSEDEQWDKLRLVVEIANE 366 (370)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
T ss_conf 888999999999999999999
No 21
>PRK01207 methionine synthase; Provisional
Probab=98.02 E-value=0.0001 Score=54.07 Aligned_cols=187 Identities=14% Similarity=0.119 Sum_probs=115.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE-------EEECCCC
Q ss_conf 320111147999999996124677652467753013722289999999999999977777549816-------7843831
Q gi|254780812|r 137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDV-------IQIFDTH 209 (346)
Q Consensus 137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~-------iqIFDs~ 209 (346)
++|+=|-.-||+|++..... . -|.+. .++-..++.++-+=++...+||+++ |||=+|.
T Consensus 118 ~kpvK~~ltGP~TI~~~s~~-----~-------~Y~~r---~~la~~lA~aln~Ev~~L~~ag~~i~~G~k~~IQiDEPa 182 (343)
T PRK01207 118 KKPIKVPITGPYTMMDWSFN-----D-------FYRDR---YDLAMEFARIINEELKDIKSAWDRKSPGRKLEIQIDEPA 182 (343)
T ss_pred CCCCEEEECCHHHHHHHHCC-----C-------CCCCH---HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCH
T ss_conf 79835760689999975456-----4-------45899---999999999999999999981773015776338756741
Q ss_pred HHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC--CCCCHHHHHCCCCCCEEECCCCC----------------
Q ss_conf 100683567776127226899998630886236024311--00001342014787223046779----------------
Q gi|254780812|r 210 AGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG--AGYMLKNYRRLTDSNAIGLDWSV---------------- 271 (346)
Q Consensus 210 ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g--~~~~l~~~~~~~g~d~isiD~~~---------------- 271 (346)
-.. .++ +.+|+...+++.++.+... + .+|.|.+ -...+..+.+ .++|++++.+..
T Consensus 183 ~~~-~~~-~~~~av~a~~~~~~gv~~~---~-~~H~Cy~~~~~~~~~~i~~-~~~d~~~~E~~~~d~~~~~~~~~~~~~~ 255 (343)
T PRK01207 183 TTT-HPD-EMDIVVDSINKSVYGIDNE---F-SIHVCYSSDYRLLYDRIPE-LNIDGYNLEYSNRDTLEPGTSDEKRPGF 255 (343)
T ss_pred HHC-CHH-HHHHHHHHHHHHHCCCCCC---E-EEEEECCCCHHHHHHHHHH-CCCCEEEEEECCCCHHHCCHHHHHCCCH
T ss_conf 115-775-9999999999984589876---3-9999678730556777862-7998898761366301001123202314
Q ss_pred -CHHHHHHH----CCCE-EEECCCCHHHH-CCCHHHHHHHHHHHHHHHCC-CCCEEEECCCCCCC---CCHHHHHHHHHH
Q ss_conf -98999970----7984-69688884677-09988999999999997325-99289608976336---688999999999
Q gi|254780812|r 272 -PLSFALEL----QKEG-PVQGNLDPMRL-VVGNQVMIDGVNAILDVLGS-GPFIFNLGHGITPQ---VDPKNVLDLVKT 340 (346)
Q Consensus 272 -dl~~a~~~----~~~~-~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~-~~~I~nLGhGi~p~---tp~eNv~~~v~~ 340 (346)
|++...++ ..+. +.-|=+|-..- ..+.|+|++..++.|+...+ .....|..||+-.- .-.+.++.||++
T Consensus 256 ~dl~~~~~~~~~~~~~k~Ig~GViDi~s~~vetveei~~rI~~al~~i~~~e~l~vnPDCGLk~~~~~~a~~KL~nMV~A 335 (343)
T PRK01207 256 QDLKYFAEHNESLQRKKFIGLGVTDVHIDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCGLRTRSREIGEQKLRNMVAA 335 (343)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 45777877554204688266005862699999989999999999972896325988899998879889999999999999
Q ss_pred HHHCC
Q ss_conf 97306
Q gi|254780812|r 341 VRSEK 345 (346)
Q Consensus 341 vr~~~ 345 (346)
+|+-+
T Consensus 336 ak~vr 340 (343)
T PRK01207 336 KNNIL 340 (343)
T ss_pred HHHHH
T ss_conf 99998
No 22
>PRK06233 hypothetical protein; Provisional
Probab=98.00 E-value=0.00024 Score=51.36 Aligned_cols=166 Identities=12% Similarity=0.075 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC-CHHHC--------CHH---HHHHHHCCCHHHHHHHHHHHCCCCEE-E
Q ss_conf 89999999999999977777549816784383-11006--------835---67776127226899998630886236-0
Q gi|254780812|r 177 FNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDT-HAGCL--------GEH---EFENYAARSVGRIISAVRRKYPNAKF-I 243 (346)
Q Consensus 177 ~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs-~ag~L--------s~~---~f~~f~~p~~kkI~~~ik~~~~~vpi-I 243 (346)
..+++.-+.++..+-++...+||++.|||=|+ ||-++ .|+ .|.+++..+++-+-..++..-.+..+ +
T Consensus 162 ~ee~~~dla~a~~~Ei~~L~~aG~~~IQiDdp~~a~l~~~~~~~~~~p~~~~~~~~~~~~~v~~~N~al~~~P~d~~i~~ 241 (372)
T PRK06233 162 WSDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNETEDDPEEHQKYVKLAEDAVYVINKLLADLPEDLTVTT 241 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99999999999999999999869998984697478898750122247256779999999999999999717998858999
Q ss_pred CCCCCCC-----------CCHHHHHCCCCCCEEECCCCC----CHHHHHHH----CCCEEEECCCCHHH-HCCCHHHHHH
Q ss_conf 2431100-----------001342014787223046779----98999970----79846968888467-7099889999
Q gi|254780812|r 244 SFAKGAG-----------YMLKNYRRLTDSNAIGLDWSV----PLSFALEL----QKEGPVQGNLDPMR-LVVGNQVMID 303 (346)
Q Consensus 244 ~f~~g~~-----------~~l~~~~~~~g~d~isiD~~~----dl~~a~~~----~~~~~lqGNldP~~-L~~~~e~i~~ 303 (346)
|.|+|+. ...+.+.+ .++|.+++.+.. +++..+.+ .++.++-|=+|... -+.++|+|.+
T Consensus 242 HiC~Gn~~~~~~~~g~Y~~Ia~~l~~-~~vd~~~lE~d~~R~g~~e~L~~~~~~~~~k~vvlGvId~~s~~vE~~e~V~~ 320 (372)
T PRK06233 242 HICRGNFKSTYLFSGGYEPVAKYLGQ-LNYDGFFLEYDNDRSGSFEPLKKIWNQRDNVRIVLGLITSKFPELEDPDEIIA 320 (372)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHH
T ss_conf 87679887665444667999999986-89998999716755562558998642689988999778489999999999999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCC---------CCCCHHHHHHHHHHHHH
Q ss_conf 99999997325992896089763---------36688999999999973
Q gi|254780812|r 304 GVNAILDVLGSGPFIFNLGHGIT---------PQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 304 ~~~~~l~~~~~~~~I~nLGhGi~---------p~tp~eNv~~~v~~vr~ 343 (346)
.+++.++-......++|.-||.. .+.--++++.+++.+++
T Consensus 321 RI~~a~~~v~~e~l~~spdCGFas~~~g~~~~~~~qwaKL~~~~e~A~~ 369 (372)
T PRK06233 321 RIDEAAEYVPLSNLALSTQCGFASTEEGNILTEADQWAKLALVKKIADK 369 (372)
T ss_pred HHHHHHHHCCHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999997189988888888898753458878999999999999999999
No 23
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=97.81 E-value=0.00076 Score=47.90 Aligned_cols=199 Identities=13% Similarity=0.139 Sum_probs=122.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 87642102453201111479999999961246776524677530137222899999999999999777775498167843
Q gi|254780812|r 127 ISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF 206 (346)
Q Consensus 127 i~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF 206 (346)
....++ +.. +|+=|-.-||.|++.-- |.. +...-+.+..-+..++.+-++..-++|+.+|||=
T Consensus 116 ~~~a~~-~~~-~~~K~~ltGP~ti~~~s--------~~~-------~~~~~~el~~~iA~al~~ev~~l~~agi~~iQiD 178 (330)
T COG0620 116 FLYAQS-LTE-KPVKGMLTGPVTILLWS--------FNR-------YYISREELAKDIALALRDEVKDLEDAGIKIIQID 178 (330)
T ss_pred HHHHHH-CCC-CCCCEECCCHHHHHHHH--------CCC-------CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 777654-156-66331137578677654--------444-------4689999999999999999999997599299626
Q ss_pred CCCHH-HCCHHH---HHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCCCCHHHHHCCCCCCEEECCCCC-CHHHHH---
Q ss_conf 83110-068356---7776127226899998630886236-02431100001342014787223046779-989999---
Q gi|254780812|r 207 DTHAG-CLGEHE---FENYAARSVGRIISAVRRKYPNAKF-ISFAKGAGYMLKNYRRLTDSNAIGLDWSV-PLSFAL--- 277 (346)
Q Consensus 207 Ds~ag-~Ls~~~---f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~~~l~~~~~~~g~d~isiD~~~-dl~~a~--- 277 (346)
|+.-+ .++... |.+++...++..+...+. ++-| .|.|.+.-..+.+....-.+|+++++..- +++...
T Consensus 179 Epal~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---d~~i~~HiCy~e~~~~~~~i~~ld~dv~~~e~~~s~~~~~~~~~ 255 (330)
T COG0620 179 EPALREGLPLRRDDDYLEWAVEAINLAAAGVGA---DTQIHLHICYSEFNDIPDAIEALDADVIDIETSRSRMELLEVLE 255 (330)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC---CCEEEEEEECCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf 666643775446647899999999999853788---83899998677455467788644760785320345512678987
Q ss_pred HHC-CCEEEECCCCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC---CCHHHHHHHHHHHHHCC
Q ss_conf 707-98469688884677-0998899999999999732599289608976336---68899999999997306
Q gi|254780812|r 278 ELQ-KEGPVQGNLDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQ---VDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 278 ~~~-~~~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~---tp~eNv~~~v~~vr~~~ 345 (346)
+.. ++.+--|=+|-..= ..+.+++.+..++.++.........|..||+-.- .-.+.++.++++++..+
T Consensus 256 ~~~~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~~~~~~e~~~vnPDCGl~~~~~~~a~~kL~nmv~a~~~~r 328 (330)
T COG0620 256 EVKYDKEIGLGVVDIHSPKVESVEEIAARIRKALERVPPERLYVNPDCGLKTLPREIAEAKLENMVKAAKEIR 328 (330)
T ss_pred HCCCCCEEECCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 4056772451468657888798899999999999738700099779866555747999999999999999974
No 24
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=97.38 E-value=0.0026 Score=44.10 Aligned_cols=175 Identities=13% Similarity=0.098 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH-HHCCHHHHHHHHC
Q ss_conf 799999999612467765246775301372228999999999999997777754981678438311-0068356777612
Q gi|254780812|r 145 GAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHA-GCLGEHEFENYAA 223 (346)
Q Consensus 145 GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~a-g~Ls~~~f~~f~~ 223 (346)
-||+|++. + +++ -.|.+ ..+|+..++++..+-++ +.|++.|||-+|.- ..-.++.+.++..
T Consensus 134 pGP~T~~~-l-----s~~------~~y~~---~~~l~~~~a~~l~~~i~---~l~~~~IQiDEPal~~~~~~~~~~~~~~ 195 (320)
T PRK08575 134 PGPLTLAY-L-----SIN------EYYKD---LEELMEAYAKVVNSLIK---ELDSDIVEIHEPSLFSKGIKEDLLEVSK 195 (320)
T ss_pred CCHHHHHH-H-----HCC------CCCCC---HHHHHHHHHHHHHHHHH---HHHHCEEECCCHHHHCCCHHHHHHHHHH
T ss_conf 75999999-8-----612------33599---99999999999999999---6120849626705431211899999999
Q ss_pred CCHHHHHHHHHHHCCCCEEECCCCC-CCCCHHHHHCCCCCCEEECCCCCC----HHHHHHH-CCCEEEECCCCHHHH-CC
Q ss_conf 7226899998630886236024311-000013420147872230467799----8999970-798469688884677-09
Q gi|254780812|r 224 RSVGRIISAVRRKYPNAKFISFAKG-AGYMLKNYRRLTDSNAIGLDWSVP----LSFALEL-QKEGPVQGNLDPMRL-VV 296 (346)
Q Consensus 224 p~~kkI~~~ik~~~~~vpiI~f~~g-~~~~l~~~~~~~g~d~isiD~~~d----l~~a~~~-~~~~~lqGNldP~~L-~~ 296 (346)
...+++.+.+... + +++.+-| ....++.+.. ..+|++++|.... +...... .++...-|=+|-..- ..
T Consensus 196 ~a~~~~~~~~~~~---~-~l~tyfg~~~~~~~~l~~-l~vd~i~ld~~~~~~~~l~~l~~~~~~k~l~~GvId~rn~~~e 270 (320)
T PRK08575 196 EVYKTMIEGLNKE---K-HVVTYFGINFQRLPTLVI-LPVDLFGGDVPENNKGKLGRVYAYIKKKRVYLGILDARNTKME 270 (320)
T ss_pred HHHHHHHHCCCCC---E-EEEECCCCHHHHHHHHHC-CCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEEECCCCCCC
T ss_conf 9999987158977---7-999746976776678734-9977799984046530038887326898799989967888749
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEECCCCC---CCCCHHHHHHHHHHHHH
Q ss_conf 988999999999997325992896089763---36688999999999973
Q gi|254780812|r 297 GNQVMIDGVNAILDVLGSGPFIFNLGHGIT---PQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 297 ~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~---p~tp~eNv~~~v~~vr~ 343 (346)
+.+++.+..++.... ....-+.+..||+. .+.=-++++++-+..|.
T Consensus 271 ~~e~i~~~i~~~~~~-~~erl~v~p~CgL~~lP~~iA~~Kl~~l~k~a~~ 319 (320)
T PRK08575 271 RIDTIRRILRKVYEK-GAERIIVGNNTLLDFIPEIVAWRKLKLLGKLKGG 319 (320)
T ss_pred CHHHHHHHHHHHHCC-CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999999999998417-9883998089987788999999999999887568
No 25
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=96.46 E-value=0.031 Score=36.58 Aligned_cols=30 Identities=37% Similarity=0.344 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 999999999999777775498167843831
Q gi|254780812|r 180 LLDFLSDVSAEYLIAQIHAGVDVIQIFDTH 209 (346)
Q Consensus 180 ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ 209 (346)
+|+.+..+-.+.++...++||+-|||=+|.
T Consensus 176 lL~~LlpvY~elL~~L~~~G~~wVQiDEP~ 205 (756)
T PRK05222 176 LLDDLLPVYQELLAELAAAGAEWVQIDEPA 205 (756)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCE
T ss_conf 999999999999999997799779725870
No 26
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=96.22 E-value=0.14 Score=31.96 Aligned_cols=166 Identities=17% Similarity=0.150 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH-HCCH
Q ss_conf 320111147999999996124677652467753013722289999999999999977777549816784383110-0683
Q gi|254780812|r 137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG-CLGE 215 (346)
Q Consensus 137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag-~Ls~ 215 (346)
-+|+| + ||+|...- +++. ++......+++.+..+-.+.++...++||+-|||=+|.-. -+++
T Consensus 150 ~kPvL--v-GPvTfL~L---sK~~-----------~~~~~~~~~l~~Ll~~Y~~lL~~L~~~G~~wVQiDEP~Lv~Dl~~ 212 (360)
T cd03312 150 TKPVL--L-GPVTFLKL---SKAK-----------GGGFDRLSLLDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPE 212 (360)
T ss_pred CCCEE--E-CHHHHHHH---HCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCH
T ss_conf 87579--7-44899887---4224-----------788798999999999999999999976997797147523047999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCEEE--CCCCCCCCCHHHHHCCCCCCEEECCCCCC---HHHHHHHC--CCEEEECC
Q ss_conf 5677761272268999986308862360--24311000013420147872230467799---89999707--98469688
Q gi|254780812|r 216 HEFENYAARSVGRIISAVRRKYPNAKFI--SFAKGAGYMLKNYRRLTDSNAIGLDWSVP---LSFALELQ--KEGPVQGN 288 (346)
Q Consensus 216 ~~f~~f~~p~~kkI~~~ik~~~~~vpiI--~f~~g~~~~l~~~~~~~g~d~isiD~~~d---l~~a~~~~--~~~~lqGN 288 (346)
+.-..|. +..+.+.+..++++++ -|-++.+..++.+.. .+++++++|-... ++..+..+ ++...-|=
T Consensus 213 ~~~~~~~-----~~Y~~L~~~~~~~kill~TYFg~~~~~~~~l~~-lpv~gl~lDlv~g~~~l~~i~~~~~~~k~L~aGV 286 (360)
T cd03312 213 EWLAAFK-----RAYEELAKAAPGLKLLLATYFGSLGENLDLLAS-LPVDGLHLDLVRGPENLEAVLKAGFADKVLSAGV 286 (360)
T ss_pred HHHHHHH-----HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHC-CCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9999999-----999999715789719998876348899999975-9986799860578667999996089986799975
Q ss_pred CCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 884677-09988999999999997325992896089763
Q gi|254780812|r 289 LDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGIT 326 (346)
Q Consensus 289 ldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~ 326 (346)
+|-.-. ..+-++..+....+....+ ...+.+..|-++
T Consensus 287 VdGRNIWr~dl~~~l~~l~~l~~~~~-~~l~vs~ScSLL 324 (360)
T cd03312 287 VDGRNIWRADLAASLALLETLAAILG-DRLVVSPSCSLL 324 (360)
T ss_pred ECCCEECHHCHHHHHHHHHHHHHHHC-CCEEEECCCCCC
T ss_conf 45845243179999999999998628-968996888654
No 27
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=96.20 E-value=0.018 Score=38.26 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=81.1
Q ss_pred HHHCCCCCCCHHHHHHHHCCCHHHHHHHHH-----------HHH-------------HHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 961246776524677530137222899999-----------999-------------99999977777549816784383
Q gi|254780812|r 153 YMISGGFIKDHGQNRVFAYQNSRAFNWLLD-----------FLS-------------DVSAEYLIAQIHAGVDVIQIFDT 208 (346)
Q Consensus 153 YmieG~~sk~~~~~~~~~~~~p~~~~~ll~-----------~lt-------------~~~~~yl~~Qi~aGad~iqIFDs 208 (346)
|-+|-=|--+|.-.++||.++| |++|=+ +|- +++..|++.-.++|+|+.=||||
T Consensus 590 fSLE~WGGATFDVA~RFL~EDP--WeRL~~lR~~vPN~lfQMLLRgANaVGYtnYPDNvv~~Fv~qa~~~GiD~FRvFDs 667 (1169)
T TIGR01235 590 FSLECWGGATFDVAMRFLHEDP--WERLEDLRKEVPNILFQMLLRGANAVGYTNYPDNVVKKFVKQAAQSGIDIFRVFDS 667 (1169)
T ss_pred CEEHHCCCHHHHHHHHHCCCCH--HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 0002058611678765157883--79999998546852468887541000024775348999999888468307870011
Q ss_pred --------------------------CHHHCCHHHHHHHHCCCHHHH-----------------------------HHHH
Q ss_conf --------------------------110068356777612722689-----------------------------9998
Q gi|254780812|r 209 --------------------------HAGCLGEHEFENYAARSVGRI-----------------------------ISAV 233 (346)
Q Consensus 209 --------------------------~ag~Ls~~~f~~f~~p~~kkI-----------------------------~~~i 233 (346)
..|-++...=.+|=|.|...| +.+|
T Consensus 668 LN~l~~l~l~~dAv~~~gkv~EAAicYtGDil~~~r~KYdL~YYt~lA~eL~~aGaHIL~iKDMAGlLKP~AAk~L~~AL 747 (1169)
T TIGR01235 668 LNWLENLKLGMDAVKEAGKVVEAAICYTGDILDPARKKYDLKYYTNLAEELVKAGAHILGIKDMAGLLKPAAAKLLIKAL 747 (1169)
T ss_pred CCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHHH
T ss_conf 13321020163677750997999975200326888974377889999999997098034301011244289999999999
Q ss_pred HHHCCCCEEECCCCCCCC-CHHHHH--CCCCCCEEE--CCCCCCHHHHHH--HCC-CEEEEC-CCCHHHHC-------CC
Q ss_conf 630886236024311000-013420--147872230--467799899997--079-846968-88846770-------99
Q gi|254780812|r 234 RRKYPNAKFISFAKGAGY-MLKNYR--RLTDSNAIG--LDWSVPLSFALE--LQK-EGPVQG-NLDPMRLV-------VG 297 (346)
Q Consensus 234 k~~~~~vpiI~f~~g~~~-~l~~~~--~~~g~d~is--iD~~~dl~~a~~--~~~-~~~lqG-NldP~~L~-------~~ 297 (346)
|+++|++||-.|..+++. ..-.|. ...|+|++- +|+---+. -+ ++. =-+|+| |+||-+=. .=
T Consensus 748 re~~PD~PiH~HTHDtSG~ava~~~aaveAGvDvvDvAv~smSG~T--SQPS~~a~~~aL~G~~~dpgln~~~v~~ls~Y 825 (1169)
T TIGR01235 748 REKIPDLPIHLHTHDTSGAAVASMLAAVEAGVDVVDVAVDSMSGLT--SQPSLGALVAALEGSERDPGLNVEDVRELSAY 825 (1169)
T ss_pred HHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEHHHHHHHCCCC--HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 7327998568626661268999999998758861145676410450--03338999997278989888898999898788
Q ss_pred HHHHHHHHH
Q ss_conf 889999999
Q gi|254780812|r 298 NQVMIDGVN 306 (346)
Q Consensus 298 ~e~i~~~~~ 306 (346)
||+++...-
T Consensus 826 We~~R~~Ya 834 (1169)
T TIGR01235 826 WEEVRKLYA 834 (1169)
T ss_pred HHHHHHHHH
T ss_conf 999974421
No 28
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276 This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=96.19 E-value=0.08 Score=33.72 Aligned_cols=32 Identities=31% Similarity=0.160 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 89999999999999977777549816784383
Q gi|254780812|r 177 FNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDT 208 (346)
Q Consensus 177 ~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs 208 (346)
...+|+.|..+=.+-++...++||+=|||=+|
T Consensus 191 ~~~~l~~Llp~Y~~vl~~L~~~Ga~wvQiDEP 222 (778)
T TIGR01371 191 PLELLEKLLPVYKEVLKKLAEAGATWVQIDEP 222 (778)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 79998999999999999998679708986385
No 29
>PRK13116 consensus
Probab=95.72 E-value=0.086 Score=33.49 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA 198 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a 198 (346)
.+..+++.++.+|++.. ++|++- ++|. ||- ++. -.-+|++...++
T Consensus 77 ~~~~~~~~v~~ir~~~~-~~Pivl--------M~Y~------------------N~i-~~~-------G~e~F~~~~~~a 121 (278)
T PRK13116 77 TVDSALEQIKRVRAAYP-EVPIGM--------LIYG------------------NVP-FTR-------GLDRFYQEFAEA 121 (278)
T ss_pred CHHHHHHHHHHHCCCCC-CCCEEE--------EECC------------------CHH-HHC-------CHHHHHHHHHHC
T ss_conf 67899999998403589-876899--------8057------------------288-772-------799999999776
Q ss_pred CCCEEEECCCCHHHCCHHHHHH
Q ss_conf 9816784383110068356777
Q gi|254780812|r 199 GVDVIQIFDTHAGCLGEHEFEN 220 (346)
Q Consensus 199 Gad~iqIFDs~ag~Ls~~~f~~ 220 (346)
|+|.+-|-| |++++-++
T Consensus 122 GvdGlIipD-----LP~eE~~~ 138 (278)
T PRK13116 122 GADSILLPD-----VPVREGAP 138 (278)
T ss_pred CCCEEEECC-----CCHHHHHH
T ss_conf 975899469-----99788899
No 30
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=95.66 E-value=0.022 Score=37.59 Aligned_cols=52 Identities=21% Similarity=0.315 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 999777775498167843831100683567776127226899998630886236024311
Q gi|254780812|r 189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG 248 (346)
Q Consensus 189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g 248 (346)
++--+.-++||||-|+|.|| .|.++|+-+.+.+ |+|.+.+|+ +.|+..||.+
T Consensus 146 Ik~~k~A~eAGADRi~~~DT-VGV~~P~km~~l~----k~~k~~~kK---d~~~sVHCHN 197 (371)
T TIGR02090 146 IKVFKKAEEAGADRINVADT-VGVLTPQKMEELI----KKIKENVKK---DLPVSVHCHN 197 (371)
T ss_pred HHHHHHHHHCCCCEEEECCC-CCCCCHHHHHHHH----HHHHHHHCC---CCCEEEEEEC
T ss_conf 99987133216777550785-5636826799999----999986358---8705886208
No 31
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276 This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=95.59 E-value=0.26 Score=30.14 Aligned_cols=195 Identities=14% Similarity=0.174 Sum_probs=124.4
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH-
Q ss_conf 1024532011114799999999612467765246775301372228999999999999997777754981678438311-
Q gi|254780812|r 132 KKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHA- 210 (346)
Q Consensus 132 ~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~a- 210 (346)
+.|- ++|+=|=-.||-|+++ ..- -+ +..--+..-+.+.-++.+=+...-+||+.+|||=++.=
T Consensus 564 QSLT-~KpVKGMLTGPVTIL~----------WSF----~R-~D~p~~~~A~QIALAlrdEV~DLE~AGI~iIQiDEPALR 627 (778)
T TIGR01371 564 QSLT-SKPVKGMLTGPVTILN----------WSF----VR-DDIPRKEIADQIALALRDEVLDLEEAGIKIIQIDEPALR 627 (778)
T ss_pred CCCC-CCCCCCCCCCCHHCCC----------CCC----CC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHC
T ss_conf 2146-8897765683211035----------535----55-688879999999999999999998769817985407850
Q ss_pred -HH----CCH-HHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC-CCCCCHHHHHCCCCCCEEECCCCC-CHHHHHHHCCC
Q ss_conf -00----683-56777612722689999863088623602431-100001342014787223046779-98999970798
Q gi|254780812|r 211 -GC----LGE-HEFENYAARSVGRIISAVRRKYPNAKFISFAK-GAGYMLKNYRRLTDSNAIGLDWSV-PLSFALELQKE 282 (346)
Q Consensus 211 -g~----Ls~-~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~-g~~~~l~~~~~~~g~d~isiD~~~-dl~~a~~~~~~ 282 (346)
|+ =.- ..|-+|+..--+=-...++... .+ .-|+|= .-+..+..+.++ .+|||||...- +++-...+-.-
T Consensus 628 EgLPLR~~d~h~~YL~WAV~aFrla~sgV~~~T-QI-HTHMCYSeFn~II~~I~~L-DADVIsIE~SRS~~~lL~~f~~~ 704 (778)
T TIGR01371 628 EGLPLRKSDWHSEYLDWAVEAFRLATSGVKDET-QI-HTHMCYSEFNDIIEAIAAL-DADVISIEASRSDMELLDAFKNI 704 (778)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-CC-CCCCCCCCHHHHHHHHHHC-CCCCEEHHHCCCCHHHHHHHHHH
T ss_conf 788877431104457899998777524888886-63-4433337743799988432-58710031104755799998520
Q ss_pred EEEECCCCHH--HHCCC----HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH---HHHHHHHHHHHHCC
Q ss_conf 4696888846--77099----8899999999999732599289608976336688---99999999997306
Q gi|254780812|r 283 GPVQGNLDPM--RLVVG----NQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDP---KNVLDLVKTVRSEK 345 (346)
Q Consensus 283 ~~lqGNldP~--~L~~~----~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~---eNv~~~v~~vr~~~ 345 (346)
...--.+=|- -.|.+ .|++..-+.++|+..-...+=.|..||+----=+ .-++.||+|+|..|
T Consensus 705 ~~Y~~giGpGVYDIHSPRvPS~eE~~~~~~~aL~~~p~~~lWVNPDCGLKTR~~~Ev~asLkNMV~AAK~~R 776 (778)
T TIGR01371 705 FGYPNGIGPGVYDIHSPRVPSVEEMADLIEKALQVLPAERLWVNPDCGLKTRNWEEVIASLKNMVEAAKAAR 776 (778)
T ss_pred CCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCHHHCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 364323487213226888673899999999999740055080578887877886156888999999999982
No 32
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=95.51 E-value=0.05 Score=35.15 Aligned_cols=76 Identities=20% Similarity=0.191 Sum_probs=51.9
Q ss_pred HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHC----CCCCCE---
Q ss_conf 7777754981678438311006835677761272268999986308862360243110000134201----478722---
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRR----LTDSNA--- 264 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~----~~g~d~--- 264 (346)
++..++-|+|-|+|=|- ||+|+|..-. +++++||++++++|+-.||.-++. +-.|+- ..|+|.
T Consensus 156 a~~L~~~G~DSI~IKDM-aGlLTP~~AY--------ELV~alK~~~~n~pvhLH~H~TtG-mA~~AllkA~EAG~d~iDT 225 (616)
T TIGR01108 156 AKELLEMGVDSICIKDM-AGLLTPKVAY--------ELVSALKKEFGNLPVHLHSHATTG-MAEMALLKAIEAGADMIDT 225 (616)
T ss_pred HHHHHHHCCCEEEEECC-CCCCCHHHHH--------HHHHHHHHHCCCEEEEEECCCCHH-HHHHHHHHHHHCCCCCCHH
T ss_conf 99999818860552020-0464415899--------999999742397468863247233-7999999888707880020
Q ss_pred ----EECCCCCCHHHHH
Q ss_conf ----3046779989999
Q gi|254780812|r 265 ----IGLDWSVPLSFAL 277 (346)
Q Consensus 265 ----isiD~~~dl~~a~ 277 (346)
+|-....+..++.
T Consensus 226 AisS~S~gtSHPptE~l 242 (616)
T TIGR01108 226 AISSMSGGTSHPPTETL 242 (616)
T ss_pred CCCCCCCCCCCCHHHHH
T ss_conf 05523478888747999
No 33
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.13 E-value=0.28 Score=29.88 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHCC----CHHHHHC-CHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCCCEEEECCCCCCCCCCCCH
Q ss_conf 34579999976155----3899842-799999987212876298726521332001043244337316887522233333
Q gi|254780812|r 30 RYLPEYRQIRKKFK----NFLDMCY-TPEYTVELTLQPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQ 104 (346)
Q Consensus 30 rylpey~~~r~~~~----~f~~~~~-~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~~v~f~~~~GP~~~p~~~~ 104 (346)
|+..-+.+++.+.. .|+..+. ++|-..|+ ++-+..=|.|+.= ||...+=+---||+|......
T Consensus 3 r~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~-i~~L~~~GaD~iE-----------LGvPfSDPvADGP~Iq~A~~r 70 (265)
T COG0159 3 RLDQKFAQLKAENRGALIPYVTAGDPDLETSLEI-IKTLVEAGADILE-----------LGVPFSDPVADGPTIQAAHLR 70 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH-HHHHHHCCCCEEE-----------ECCCCCCCCCCCHHHHHHHHH
T ss_conf 4899999999737897488894889998999999-9999867988899-----------668888867668899998999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 55420567012344323787778764210245320111147999999996124677652467753013722289999999
Q gi|254780812|r 105 EIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFL 184 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~l 184 (346)
.. +.. -.+..+++-++.+|++ +.++|++ |+ .|-||-....+-
T Consensus 71 AL-----~~g---~t~~~~lel~~~~r~~-~~~~Piv--------lm------------------~Y~Npi~~~Gie--- 112 (265)
T COG0159 71 AL-----AAG---VTLEDTLELVEEIRAK-GVKVPIV--------LM------------------TYYNPIFNYGIE--- 112 (265)
T ss_pred HH-----HCC---CCHHHHHHHHHHHHHC-CCCCCEE--------EE------------------EECCHHHHHHHH---
T ss_conf 99-----779---9889999999999861-8999889--------98------------------701188773599---
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHH
Q ss_conf 9999999777775498167843831100683567776
Q gi|254780812|r 185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENY 221 (346)
Q Consensus 185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f 221 (346)
.|++.-.++|+|.+.|-| |++++=.+|
T Consensus 113 -----~F~~~~~~~GvdGlivpD-----LP~ee~~~~ 139 (265)
T COG0159 113 -----KFLRRAKEAGVDGLLVPD-----LPPEESDEL 139 (265)
T ss_pred -----HHHHHHHHCCCCEEEECC-----CCHHHHHHH
T ss_conf -----999999975998798578-----986677789
No 34
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=94.75 E-value=0.099 Score=33.06 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=45.8
Q ss_pred HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHC-CCCEEECCCCCCCCC----HHHHHCCCCC
Q ss_conf 99997777754981678438311006835677761272268999986308-862360243110000----1342014787
Q gi|254780812|r 188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKY-PNAKFISFAKGAGYM----LKNYRRLTDS 262 (346)
Q Consensus 188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~-~~vpiI~f~~g~~~~----l~~~~~~~g~ 262 (346)
-++.++...+.|||.|+|=|. ||+|+|..- .+++.++|+.. |++||-+|+..++.. +..-.+ .|+
T Consensus 157 y~~~ak~l~~~G~d~i~IKDm-AGll~P~~a--------~~LV~~lk~~~g~d~pI~~HtH~T~G~~~~~~l~Aie-AGv 226 (499)
T PRK12330 157 FVEQAKRLLDMGCDSICIKDM-AALLKPQPA--------YDLVKGIKEACGPDTRVHVHAHATTGVTLVSLMKAIE-AGV 226 (499)
T ss_pred HHHHHHHHHHCCCCEEEEECC-CCCCCHHHH--------HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHH-CCC
T ss_conf 999999999759998998475-346788999--------9999999986389983798517887469999999998-499
Q ss_pred CEE
Q ss_conf 223
Q gi|254780812|r 263 NAI 265 (346)
Q Consensus 263 d~i 265 (346)
|++
T Consensus 227 Div 229 (499)
T PRK12330 227 DVV 229 (499)
T ss_pred CEE
T ss_conf 887
No 35
>PRK13117 consensus
Probab=94.70 E-value=0.23 Score=30.54 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA 198 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a 198 (346)
.+..+++.++.+|++.. ++|++ +++|. ||- +. .-.-+|++...++
T Consensus 77 ~~~~~~~~~~~ir~~~~-~~piv--------lM~Y~------------------N~i-----~~---~G~e~F~~~~~~a 121 (268)
T PRK13117 77 TPAQCFELLAKIRAKYP-TIPIG--------LLLYA------------------NLV-----FA---NGIDNFYARCAEA 121 (268)
T ss_pred CHHHHHHHHHHHHCCCC-CCCEE--------EEECC------------------CHH-----HH---CCHHHHHHHHHHC
T ss_conf 69999999988500478-98779--------97326------------------289-----87---1799999999976
Q ss_pred CCCEEEECC
Q ss_conf 981678438
Q gi|254780812|r 199 GVDVIQIFD 207 (346)
Q Consensus 199 Gad~iqIFD 207 (346)
|+|.+-|-|
T Consensus 122 GvdGvIipD 130 (268)
T PRK13117 122 GVDSVLIAD 130 (268)
T ss_pred CCCEEEECC
T ss_conf 987798579
No 36
>PRK13138 consensus
Probab=94.53 E-value=0.33 Score=29.38 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 2378777876421024532011
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLI 141 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLI 141 (346)
+..+++.++.+|+. ..++|++
T Consensus 74 ~~~~~~~~~~ir~~-~~~~piv 94 (264)
T PRK13138 74 MDKILEITAEIHKL-HPEIPLV 94 (264)
T ss_pred HHHHHHHHHHHCCC-CCCCCEE
T ss_conf 88974467760335-8988889
No 37
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=94.34 E-value=0.33 Score=29.39 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 9999977777549816784383110068356777612722689999863088623602431100
Q gi|254780812|r 187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG 250 (346)
Q Consensus 187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~ 250 (346)
.-.++++...+.|+|-|+|=|- ||+|+|..-. ++++.+|+..+ +|+..||..++
T Consensus 157 ~yv~~akel~~~g~DSIciKDm-aGlltP~~ay--------elVk~iK~~~~-~pv~lHtH~Ts 210 (472)
T COG5016 157 YYVELAKELLEMGVDSICIKDM-AGLLTPYEAY--------ELVKAIKKELP-VPVELHTHATS 210 (472)
T ss_pred HHHHHHHHHHHCCCCEEEEECC-CCCCCHHHHH--------HHHHHHHHHCC-CEEEEECCCCC
T ss_conf 9999999999727987884000-0269868899--------99999997459-70698504555
No 38
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.22 E-value=0.14 Score=31.99 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCC-H---HHHHCCCC
Q ss_conf 9999997777754981678438311006835677761272268999986308862360243110000-1---34201478
Q gi|254780812|r 186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYM-L---KNYRRLTD 261 (346)
Q Consensus 186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~-l---~~~~~~~g 261 (346)
+..++.++...++|||.|+|-|+ +|+|.|..-. +++.++|+.. ++||-.||.++..+ . ..-.+ .|
T Consensus 154 ~yyv~~a~~l~~~Gad~I~ikD~-aGll~P~~~~--------eLV~aLk~~~-~lpI~~HtH~t~Gla~an~laAie-AG 222 (463)
T PRK12331 154 DYFVKLAKEMQEIGADSICIKDM-AGILTPYVAY--------ELVKCIKENV-TVPLEVHTHATSGIAEMTYLKAIE-AG 222 (463)
T ss_pred HHHHHHHHHHHHCCCCEEEEECC-CCCCCHHHHH--------HHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHH-CC
T ss_conf 99999999999649988998678-6776889999--------9999999744-985699836887579999999998-49
Q ss_pred CCEEEC
Q ss_conf 722304
Q gi|254780812|r 262 SNAIGL 267 (346)
Q Consensus 262 ~d~isi 267 (346)
+|++.+
T Consensus 223 aDivD~ 228 (463)
T PRK12331 223 ADIIDT 228 (463)
T ss_pred CCEEEE
T ss_conf 999962
No 39
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=93.94 E-value=0.18 Score=31.26 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCC----HHHHHCCCC
Q ss_conf 9999997777754981678438311006835677761272268999986308862360243110000----134201478
Q gi|254780812|r 186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYM----LKNYRRLTD 261 (346)
Q Consensus 186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~----l~~~~~~~g 261 (346)
+.-.+.++...++|||.|+|=|+ ||+|.|..-. +++.++|+ .+++|+-.|+.++..+ +..-.+ .|
T Consensus 163 ~yy~~~ak~l~~~Gad~I~iKDm-aGlL~P~~a~--------~LV~~lK~-~~~iPI~~HtH~t~Gla~a~~laAie-AG 231 (468)
T PRK12581 163 NYYLSLVKELVEMGADSICIKDM-AGILTPKAAK--------ELVSGIKA-MTNLPLIVHTHATSGISQMTYLAAVE-AG 231 (468)
T ss_pred HHHHHHHHHHHHCCCCEEEEECC-CCCCCHHHHH--------HHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHH-CC
T ss_conf 99999999999739998998478-7776889999--------99999983-67986599825887549999999998-19
Q ss_pred CCEEE
Q ss_conf 72230
Q gi|254780812|r 262 SNAIG 266 (346)
Q Consensus 262 ~d~is 266 (346)
+|++.
T Consensus 232 aDiVD 236 (468)
T PRK12581 232 ADRID 236 (468)
T ss_pred CCEEE
T ss_conf 99997
No 40
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase; InterPro: IPR010138 This entry represents LpxH, or UDP-2,3-diacylglucosamine hydrolase (or pyrophosphatase), which is an essential enzyme in Escherichia coli that catalyses the fourth step in lipid A biosynthesis. This reaction involves pyrophosphate bond hydrolysis of the precursor UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate and UMP . Several Gram-negative bacteria have homologues of LpxH and/or LpxH2, while others have only distant orthologues of LpxH or LpxH2, or lack these enzymes altogether .; GO: 0016462 pyrophosphatase activity, 0009245 lipid A biosynthetic process, 0005737 cytoplasm.
Probab=93.89 E-value=0.043 Score=35.60 Aligned_cols=75 Identities=15% Similarity=0.278 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHCCCCEEEE----CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCH--HHHH
Q ss_conf 9999999977777549816784----383110068356777612722689999863088623602431100001--3420
Q gi|254780812|r 184 LSDVSAEYLIAQIHAGVDVIQI----FDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYML--KNYR 257 (346)
Q Consensus 184 lt~~~~~yl~~Qi~aGad~iqI----FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l--~~~~ 257 (346)
||..-++|++.++..+||+++| ||-|-|-=.+..+.+=+..-++++.+ . |||+ ||.+|+--.| +.++
T Consensus 16 iTa~Fl~FL~~~A~G~AdALYILGDLFeaWIGDD~~~~l~~~va~~~r~vsd----~--GV~~-YF~~GNRDFLiG~~Fa 88 (241)
T TIGR01854 16 ITALFLDFLREEARGKADALYILGDLFEAWIGDDDPSALARSVAEAIRAVSD----Q--GVPC-YFMHGNRDFLIGKRFA 88 (241)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHCEECCCCCCHHHHHHHHHHHHHHC----C--CEEE-EEECCCCHHHHHHHHH
T ss_conf 8999999987523340000221012000114689721799999999998732----8--9079-8405985156668999
Q ss_pred CCCCCCEE
Q ss_conf 14787223
Q gi|254780812|r 258 RLTDSNAI 265 (346)
Q Consensus 258 ~~~g~d~i 265 (346)
+.+|+..+
T Consensus 89 r~aG~~LL 96 (241)
T TIGR01854 89 REAGMTLL 96 (241)
T ss_pred HHHCCEEC
T ss_conf 97088107
No 41
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=93.78 E-value=0.7 Score=27.09 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=16.5
Q ss_pred ECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEE
Q ss_conf 43831100683567776127226899998630886236
Q gi|254780812|r 205 IFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKF 242 (346)
Q Consensus 205 IFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpi 242 (346)
+||+-+--++..+ +.+... -+.++.+|+.+|++.+
T Consensus 158 ~~DpLv~~i~t~~--~~~~~~-leair~ik~~~P~v~t 192 (268)
T PRK07535 158 YIDPLVLPLSAAQ--TAGVEV-LETIRRIKELYPKVHT 192 (268)
T ss_pred EEECCCCEEECCC--HHHHHH-HHHHHHHHHHCCCCCE
T ss_conf 8845512100680--789999-9999999987877775
No 42
>pfam08267 Meth_synt_1 Cobalamin-independent synthase, N-terminal domain. The N-terminal domain and C-terminal domains of cobalamin-independent synthases together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilize a loop from the C-terminal domain.
Probab=93.55 E-value=0.76 Score=26.82 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 23787778764210245320111147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG 199 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG 199 (346)
+..+.||.. +.. .-+|+| -||+|...- +|... ..+ -..+++.++.+-.+-++...++|
T Consensus 137 ~~e~~eA~~-lG~---~~kPVL---vGPvTfL~L------sk~~~------~~~---~~~ll~~ll~~Y~~ll~~L~~~G 194 (310)
T pfam08267 137 LEEYLEAKA-LGI---KAKPVL---LGPLTFLWL------SKNKG------GKD---RLELLEALLPVYKELLKELAAAG 194 (310)
T ss_pred HHHHHHHHH-CCC---CCCCEE---ECCHHHHHH------HCCCC------CCC---HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999997-499---888668---551899987------50257------899---99999999999999999998779
Q ss_pred CCEEEECCCCH-HHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCCCCHHHHHCCCCCCEEECCCCCC---HH
Q ss_conf 81678438311-00683567776127226899998630886236-024311000013420147872230467799---89
Q gi|254780812|r 200 VDVIQIFDTHA-GCLGEHEFENYAARSVGRIISAVRRKYPNAKF-ISFAKGAGYMLKNYRRLTDSNAIGLDWSVP---LS 274 (346)
Q Consensus 200 ad~iqIFDs~a-g~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~~~l~~~~~~~g~d~isiD~~~d---l~ 274 (346)
|+-|||=+|.- .-++++.-+.|..-| +++.+ ...+.+-+ -||. +....++.+.+ .+++++++|-... ++
T Consensus 195 ~~wVQiDEP~Lv~dl~~~~~~~~~~~Y-~~L~~---~~~~kill~TYFg-~~~~~~~~l~~-lpv~gl~lDlv~~~~~l~ 268 (310)
T pfam08267 195 AEWVQIDEPALVLDLPKEWLEAFKEAY-AELAS---KGGLKLLLATYFG-SVADALELLAS-LPVDGLGLDLVRGPENLA 268 (310)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHH-HHHHH---CCCCCEEEECCCC-CHHHHHHHHHC-CCCCEEEEECCCCHHHHH
T ss_conf 987983277021579999999999999-99971---7898689982556-78889999976-997479986057865799
Q ss_pred HHHH-HCC-CEEEECCCCHHHH-CCCHHHHHHHHHHHHH
Q ss_conf 9997-079-8469688884677-0998899999999999
Q gi|254780812|r 275 FALE-LQK-EGPVQGNLDPMRL-VVGNQVMIDGVNAILD 310 (346)
Q Consensus 275 ~a~~-~~~-~~~lqGNldP~~L-~~~~e~i~~~~~~~l~ 310 (346)
.... ... +...-|=+|-.-. ..+-+...+.+.++.+
T Consensus 269 ~v~~~~p~~k~L~aGvVdGRNIWr~dl~~~l~~l~~l~~ 307 (310)
T pfam08267 269 ALKKGFPADKVLSAGVIDGRNIWRADLEKALALLETLAE 307 (310)
T ss_pred HHHHHCCCCCEEEEEEECCEECCHHCHHHHHHHHHHHHH
T ss_conf 999618999789999865710443279999999999999
No 43
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=93.55 E-value=0.76 Score=26.82 Aligned_cols=52 Identities=13% Similarity=0.034 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf 9999999777775498167843831100683567776127226899998630886236024
Q gi|254780812|r 185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF 245 (346)
Q Consensus 185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f 245 (346)
|.-++++++.--++|||++++.=|.-.-.+.+ -...|.++|.++. +.|++.|
T Consensus 82 t~~~i~~a~~A~~~Gadav~v~~P~y~~~s~~----~l~~~f~~ia~~~-----~~Pi~lY 133 (292)
T PRK03170 82 TAEAIELTKFAEKAGADGALVVTPYYNKPTQE----GLYQHFKAIAEAT-----DLPIILY 133 (292)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH----HHHHHHHHHHHCC-----CCCEEEE
T ss_conf 99999999989875999899617768899999----9999999998635-----9976987
No 44
>PRK13114 consensus
Probab=93.30 E-value=0.38 Score=28.97 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA 198 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a 198 (346)
.+..+++-++.+|++.. ++|+|- ++| -|| ++..- .-.|++..-++
T Consensus 73 ~l~~~f~~v~~~r~~~~-~~Pivl--------M~Y------------------~N~-----i~~~G---~~~F~~~~~~a 117 (266)
T PRK13114 73 TTADIFRIAAEFRQRHP-EVPLVL--------MGY------------------ANP-----MVRRG---PDWFAAECKKA 117 (266)
T ss_pred CHHHHHHHHHHHHHCCC-CCCEEE--------EEE------------------HHH-----HHHHH---HHHHHHHHHHC
T ss_conf 79999999999874189-988799--------863------------------019-----99864---99999999974
Q ss_pred CCCEEEECCCCHHHCCHHHHHHH
Q ss_conf 98167843831100683567776
Q gi|254780812|r 199 GVDVIQIFDTHAGCLGEHEFENY 221 (346)
Q Consensus 199 Gad~iqIFDs~ag~Ls~~~f~~f 221 (346)
|+|.+-|-| |++++-.+|
T Consensus 118 GvdG~IipD-----LP~eE~~~~ 135 (266)
T PRK13114 118 GVDGVICVD-----IPPEEDAEL 135 (266)
T ss_pred CCCEEEECC-----CCHHHHHHH
T ss_conf 997798458-----997888999
No 45
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=93.28 E-value=0.84 Score=26.53 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 32378777876421024532011
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLI 141 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLI 141 (346)
.+..+++.++.+|++.. ++|++
T Consensus 69 ~~~~~~~~~~~~r~~~~-~~piv 90 (258)
T pfam00290 69 TLDQTLELVEEIRNKGT-SVPIV 90 (258)
T ss_pred CHHHHHHHHHHHHHCCC-CCCEE
T ss_conf 69999999998551289-98889
No 46
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=93.22 E-value=0.86 Score=26.47 Aligned_cols=189 Identities=14% Similarity=0.169 Sum_probs=113.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH-
Q ss_conf 0245320111147999999996124677652467753013722289999999999999977777549816784383110-
Q gi|254780812|r 133 KLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG- 211 (346)
Q Consensus 133 ~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag- 211 (346)
.|. ++|+=|-..||.|+... . |.++ ...-...-..+.-++.+=+...-+||+.+|||=++.--
T Consensus 542 SlT-~KpvKGMLTGPVTIL~W----------S----FvRd-D~pr~~~a~QiALAlrdEV~dLE~aGI~iIQIDEpAlRE 605 (756)
T PRK05222 542 SLT-DKPVKGMLTGPVTILNW----------S----FVRD-DQPRKETAKQIALAIRDEVLDLEAAGIKIIQIDEPALRE 605 (756)
T ss_pred HCC-CCCCCEEECCCHHHHCC----------C----CCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHC
T ss_conf 713-89743330463455302----------5----3146-779999999999999999999998699789846168755
Q ss_pred HCC-----HHHHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCC-CCCCHHHHHCCCCCCEEECCCCC-C--HHHHHHHCC
Q ss_conf 068-----3567776127226899998630886236-024311-00001342014787223046779-9--899997079
Q gi|254780812|r 212 CLG-----EHEFENYAARSVGRIISAVRRKYPNAKF-ISFAKG-AGYMLKNYRRLTDSNAIGLDWSV-P--LSFALELQK 281 (346)
Q Consensus 212 ~Ls-----~~~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g-~~~~l~~~~~~~g~d~isiD~~~-d--l~~a~~~~~ 281 (346)
-|+ -..|.+|+.+..+--...++.. +-| .|.|=. -+..++.+.. .++|+||+...- + +-.+.+..
T Consensus 606 gLPLr~~~~~~YL~WAv~aFrlats~v~~~---TQIHTHMCYSeF~dIi~aI~~-mDADVIsiE~sRS~~ell~~f~~~- 680 (756)
T PRK05222 606 GLPLRRSDWDAYLDWAVEAFRLATSGVKDE---TQIHTHMCYSEFNDIIDAIAA-LDADVISIETSRSDMELLDAFEDF- 680 (756)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCC---CEEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHC-
T ss_conf 688774367899999999999872478977---723641246627999999985-898757898317767389999867-
Q ss_pred CEEEECCCCHHH--HC----CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHH---HHHHHHHHHHC
Q ss_conf 846968888467--70----99889999999999973259928960897633668899---99999999730
Q gi|254780812|r 282 EGPVQGNLDPMR--LV----VGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKN---VLDLVKTVRSE 344 (346)
Q Consensus 282 ~~~lqGNldP~~--L~----~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eN---v~~~v~~vr~~ 344 (346)
.....+-|-+ .+ -+.|++.+..++.++.......=.|..||+---.-+|. ++.||+++|.-
T Consensus 681 --~y~~~IGpGVYDIHSPrvPsveEi~~~i~~al~~i~~e~lWVNPDCGLKTR~w~Et~~aL~nMV~Aa~~~ 750 (756)
T PRK05222 681 --GYPNEIGPGVYDIHSPRVPSVEEIEALLRKALEVIPAERLWVNPDCGLKTRGWPETEAALKNMVAAAKEL 750 (756)
T ss_pred --CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf --9976677800125789999989999999999971899888889888877698288899999999999999
No 47
>PRK13119 consensus
Probab=92.95 E-value=0.94 Score=26.20 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA 198 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a 198 (346)
.+..+++.++.+|++- .++|++ +++|. || ++.. -.-+|++..-++
T Consensus 75 ~~~~~~~~~~~ir~~~-~~~piv--------lMtY~------------------N~-----i~~y---G~e~F~~~~~~~ 119 (261)
T PRK13119 75 SLRDVLDVVRKFRETD-TQTPVV--------LMGYL------------------NP-----VHKM---GYREFAQEAAKA 119 (261)
T ss_pred CHHHHHHHHHHHHCCC-CCCCEE--------EEECH------------------HH-----HHHH---HHHHHHHHHHHC
T ss_conf 7889999999865148-998989--------98403------------------78-----9886---299999999975
Q ss_pred CCCEEEECCCCHHHCCHHHHHHH
Q ss_conf 98167843831100683567776
Q gi|254780812|r 199 GVDVIQIFDTHAGCLGEHEFENY 221 (346)
Q Consensus 199 Gad~iqIFDs~ag~Ls~~~f~~f 221 (346)
|+|.+-|-| |+.++.++|
T Consensus 120 GvdGvIipD-----LP~ee~~~~ 137 (261)
T PRK13119 120 GVDGVLTVD-----SPVETIDPL 137 (261)
T ss_pred CCCEEEECC-----CCHHHHHHH
T ss_conf 985798368-----997887999
No 48
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=92.88 E-value=0.2 Score=30.85 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=46.5
Q ss_pred HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC-CCHHHHHCCCCCCEEECCCC
Q ss_conf 77777549816784383110068356777612722689999863088623602431100-00134201478722304677
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG-YMLKNYRRLTDSNAIGLDWS 270 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~-~~l~~~~~~~g~d~isiD~~ 270 (346)
+..=++||||+|++ |- .+|++ +++.++.++.+.|++ ++=-++|.+ ..+..|+. +|.|+||+..-
T Consensus 199 a~eA~~AGADiImL-DN----m~p~~--------~~~av~~~~~~~p~~-~~EaSGGitl~n~~~ya~-~gVD~IS~G~l 263 (276)
T TIGR00078 199 AEEAAEAGADIIML-DN----MKPEE--------IKEAVELLKGRNPNV-LVEASGGITLDNIEEYAE-TGVDVISSGAL 263 (276)
T ss_pred HHHHHHCCCCEEEC-CC----CCHHH--------HHHHHHHHHHCCCEE-EEEEECCCCHHHHHHHHH-CCCCEEECCCH
T ss_conf 99999709959980-69----89479--------999999997029908-999836998789999840-89758832741
No 49
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=92.78 E-value=0.34 Score=29.30 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCC-HHHHH--CCCCC
Q ss_conf 9999997777754981678438311006835677761272268999986308862360243110000-13420--14787
Q gi|254780812|r 186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYM-LKNYR--RLTDS 262 (346)
Q Consensus 186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~-l~~~~--~~~g~ 262 (346)
+.-.+.++...+.|||.|+|=|. ||+|.|.. ..+++.++|+.. ++||-+|+.++... .-.+. -..|+
T Consensus 155 ~yy~~~a~~l~~~G~d~i~iKDm-aGll~P~~--------a~~LV~alk~~~-~lpI~~HtH~t~G~~~a~~l~A~eAGv 224 (580)
T PRK09282 155 ETWVDLAKQLEEMGCDSICIKDM-AGLLTPYA--------AYELVSALKKEV-DLPVHLHCHATTGLATMTYLKAVEAGV 224 (580)
T ss_pred HHHHHHHHHHHHCCCCEEEEECC-CCCCCHHH--------HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 99999999999749988997266-55789899--------999999999861-981699824776479999999998488
Q ss_pred CEE
Q ss_conf 223
Q gi|254780812|r 263 NAI 265 (346)
Q Consensus 263 d~i 265 (346)
|++
T Consensus 225 div 227 (580)
T PRK09282 225 DIL 227 (580)
T ss_pred CEE
T ss_conf 867
No 50
>PRK12999 pyruvate carboxylase; Reviewed
Probab=92.27 E-value=0.66 Score=27.27 Aligned_cols=108 Identities=16% Similarity=0.209 Sum_probs=62.6
Q ss_pred HCCCCCCCHHHHHHHHCCCHHHHHHHHH--H---------H-------------HHHHHHHHHHHHHCCCCEEEECCCC-
Q ss_conf 1246776524677530137222899999--9---------9-------------9999999777775498167843831-
Q gi|254780812|r 155 ISGGFIKDHGQNRVFAYQNSRAFNWLLD--F---------L-------------SDVSAEYLIAQIHAGVDVIQIFDTH- 209 (346)
Q Consensus 155 ieG~~sk~~~~~~~~~~~~p~~~~~ll~--~---------l-------------t~~~~~yl~~Qi~aGad~iqIFDs~- 209 (346)
+|--|--.|....+|+.++| |++|-. . | -+++..|++.-+++|.|++-|||+-
T Consensus 575 lE~WGGATfDv~~RfL~EdP--w~Rl~~lr~~~pn~~~QmLlRg~N~vGY~~Ypdnvv~~fv~~a~~~GiDvfRiFD~LN 652 (1147)
T PRK12999 575 LEMWGGATFDVAYRFLKEDP--WERLAELREAMPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLN 652 (1147)
T ss_pred EEECCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 87127863899998755692--8999999986777346653122444576679737999999999983989116731344
Q ss_pred --------------------------HHHCCH-------HHHHHHHC--------------------C-CHHHHHHHHHH
Q ss_conf --------------------------100683-------56777612--------------------7-22689999863
Q gi|254780812|r 210 --------------------------AGCLGE-------HEFENYAA--------------------R-SVGRIISAVRR 235 (346)
Q Consensus 210 --------------------------ag~Ls~-------~~f~~f~~--------------------p-~~kkI~~~ik~ 235 (346)
+++++| ++|-+.+. | ...+++.++|+
T Consensus 653 ~~~nm~~~i~~v~~~g~~~e~aicyTGdi~dp~~~~~~l~yy~~~a~~l~~~G~~~l~IKDMAGLl~P~aa~~LV~aLk~ 732 (1147)
T PRK12999 653 WVENMRVAIDAVRETGKVAEAAICYTGDILDPARAKYDLDYYVDLAKELEAAGAHILAIKDMAGLLKPAAAYKLVSALKE 732 (1147)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 66778999999997098899998742577787888766999999999999768988997144546887999999999986
Q ss_pred HCCCCEEECCCCCCCCC-HHHHHC--CCCCCEE
Q ss_conf 08862360243110000-134201--4787223
Q gi|254780812|r 236 KYPNAKFISFAKGAGYM-LKNYRR--LTDSNAI 265 (346)
Q Consensus 236 ~~~~vpiI~f~~g~~~~-l~~~~~--~~g~d~i 265 (346)
. +++||-+|+.+++.. .-.+.. ..|+|++
T Consensus 733 ~-~~lPIhlHtHdTsG~~~at~laA~eAGvDiV 764 (1147)
T PRK12999 733 E-VDLPIHLHTHDTSGNGLATYLAAAEAGVDIV 764 (1147)
T ss_pred H-CCCCEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 1-6984598436788558999999998599989
No 51
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=92.22 E-value=0.5 Score=28.12 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHH-CCCCEEECCCCCC
Q ss_conf 99999777775498167843831100683567776127226899998630-8862360243110
Q gi|254780812|r 187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRK-YPNAKFISFAKGA 249 (346)
Q Consensus 187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~-~~~vpiI~f~~g~ 249 (346)
.+.+.++...++|||.|.|-|| +|.+.|++.. ++++.+++. .+++|+-.|+.++
T Consensus 145 ~l~~~a~~~~~~Gad~I~l~DT-~G~~~P~~v~--------~~v~~l~~~l~~~i~igfH~HNn 199 (337)
T PRK08195 145 KLAEQAKLMESYGAQCVYVVDS-AGALLPDDVR--------ARVRALRAALKPDTQVGFHGHHN 199 (337)
T ss_pred HHHHHHHHHHHCCCCEEEECCC-CCCCCHHHHH--------HHHHHHHHHCCCCCEEEEEECCC
T ss_conf 9999999998659999997898-7667999999--------99999998649985499985388
No 52
>PRK13131 consensus
Probab=92.12 E-value=1.2 Score=25.49 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 2378777876421024532011
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLI 141 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLI 141 (346)
+...++.++.+|+. ..++|++
T Consensus 71 ~~~~~~~~~~~r~~-~~~~piv 91 (257)
T PRK13131 71 MAKNFQLLKKIRDY-NHHIPIG 91 (257)
T ss_pred HHHHHHHHHHHHHC-CCCCCEE
T ss_conf 89999999998704-9998889
No 53
>KOG2263 consensus
Probab=91.98 E-value=0.89 Score=26.35 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCH--HH-C---CHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC-CCCCHH
Q ss_conf 99999999997777754981678438311--00-6---83567776127226899998630886236024311-000013
Q gi|254780812|r 182 DFLSDVSAEYLIAQIHAGVDVIQIFDTHA--GC-L---GEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG-AGYMLK 254 (346)
Q Consensus 182 ~~lt~~~~~yl~~Qi~aGad~iqIFDs~a--g~-L---s~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g-~~~~l~ 254 (346)
..+.-.+.+-..-.-++|+.+|||=++.- |+ | ....|.+|+....+--...+++.. .+ ..|||-. -+..+.
T Consensus 582 ~QiALaikDEV~DLEkaGikVIQiDE~ALREGLPLR~aE~~~Yl~WAv~aFRi~~sgVqd~T-QI-HtH~CYSdfndi~~ 659 (765)
T KOG2263 582 YQIALAIKDEVEDLEKAGIKVIQIDEAALREGLPLRKAEHSFYLDWAVHAFRITNSGVQDST-QI-HTHMCYSDFNDIIH 659 (765)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-HH-HHHHHHHCCCHHHH
T ss_conf 99999888788789872965999570787558975235688899999888533043456651-01-22101400237888
Q ss_pred HHHCCCCCCEEECCCCCCHHHHHHHCCCEEEEC-CCCHHH--HC----CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 420147872230467799899997079846968-888467--70----99889999999999973259928960897633
Q gi|254780812|r 255 NYRRLTDSNAIGLDWSVPLSFALELQKEGPVQG-NLDPMR--LV----VGNQVMIDGVNAILDVLGSGPFIFNLGHGITP 327 (346)
Q Consensus 255 ~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lqG-NldP~~--L~----~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p 327 (346)
.+.+ ..+|++++.+.-+-+.......+.+--| .+-|-+ ++ -+.+++.+...+++......-+=.|..||+--
T Consensus 660 ~I~~-mDADVitIEnSrsD~kllsvf~~gvkY~~~IGpG~~DIHSPRiPs~dE~~erI~~~l~~~~~~~lWvNPDCGLKT 738 (765)
T KOG2263 660 SIID-MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIAERINKMLAVLPQNILWVNPDCGLKT 738 (765)
T ss_pred HHHH-CCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
T ss_conf 9885-457679975475648999998614765677687500046899998789999999999726402277778867444
Q ss_pred ----CCCHHHHHHHHHHHHHC
Q ss_conf ----66889999999999730
Q gi|254780812|r 328 ----QVDPKNVLDLVKTVRSE 344 (346)
Q Consensus 328 ----~tp~eNv~~~v~~vr~~ 344 (346)
+|.+ .++.||++.|.+
T Consensus 739 R~~~E~~~-~L~~Mv~AAk~~ 758 (765)
T KOG2263 739 RGYTEVKP-ALKNMVAAAKLI 758 (765)
T ss_pred CCCCCCHH-HHHHHHHHHHHH
T ss_conf 88730208-899999999999
No 54
>PRK13123 consensus
Probab=91.82 E-value=1.3 Score=25.26 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=12.9
Q ss_pred HHHHHHHCCCCEEEECC
Q ss_conf 97777754981678438
Q gi|254780812|r 191 YLIAQIHAGVDVIQIFD 207 (346)
Q Consensus 191 yl~~Qi~aGad~iqIFD 207 (346)
|++...++|+|.+-|-|
T Consensus 109 F~~~~~~~GvdGvIipD 125 (256)
T PRK13123 109 FVEDLAETGVKGLIIPD 125 (256)
T ss_pred HHHHHHHCCCCEEECCC
T ss_conf 99999974997897379
No 55
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=91.76 E-value=1.3 Score=25.22 Aligned_cols=133 Identities=15% Similarity=0.169 Sum_probs=59.3
Q ss_pred HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC-CCCCC----------CCCHHHHHCCC
Q ss_conf 77777549816784383110068356777612722689999863088623602-43110----------00013420147
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFIS-FAKGA----------GYMLKNYRRLT 260 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~-f~~g~----------~~~l~~~~~~~ 260 (346)
+.+.+++|||.+ +||+..++. -.+..+..+|+.. +.|++. |+-.. ...+..+.. .
T Consensus 132 ~~~L~e~GvD~i-llET~~dl~-----------E~~~Al~aar~~~-~lPvi~s~t~~~~G~t~~G~~~~~a~~~l~~-~ 197 (608)
T PRK08645 132 IDALLEEGVDGL-LLETFYDLE-----------ELLEALKAARKKT-DLPIIAQVAFHEDGVTQNGTSLEEALKQLVA-L 197 (608)
T ss_pred HHHHHHCCCCEE-EEEHHCCHH-----------HHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCHHHHHHHHHC-C
T ss_conf 999975799899-986305999-----------9999999999756-9979999998899808999979999999862-8
Q ss_pred CCCEEECCCCCCHHHH----HHH----CCCEEEECCC-CHHH-----HC-CCHHHHHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 8722304677998999----970----7984696888-8467-----70-998899999999999732599289608976
Q gi|254780812|r 261 DSNAIGLDWSVPLSFA----LEL----QKEGPVQGNL-DPMR-----LV-VGNQVMIDGVNAILDVLGSGPFIFNLGHGI 325 (346)
Q Consensus 261 g~d~isiD~~~dl~~a----~~~----~~~~~lqGNl-dP~~-----L~-~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi 325 (346)
|+|++++.=....... +++ ...+..+-|- -|.. .+ .++|.+.+.++++.+.+.+ |..==||
T Consensus 198 gad~VG~NC~~GP~~m~~~l~~l~~~~~~pl~v~PNAGlP~~~~gr~~Y~~tPe~Fa~~a~~~~~~Ga~---iIGGCCG- 273 (608)
T PRK08645 198 GADVVGLNCGLGPYHMLEALKRIELPADAPLSAYPNAGLPEYVEGRYVYSANPEYFAEYAREFVEEGVR---LIGGCCG- 273 (608)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCC---EEEECCC-
T ss_conf 998898879789999999999987425981899788999887898302789999999999999985997---9975779-
Q ss_pred CCCCCHHHHHHHHHHHHHCC
Q ss_conf 33668899999999997306
Q gi|254780812|r 326 TPQVDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 326 ~p~tp~eNv~~~v~~vr~~~ 345 (346)
|.||.++++-+++|..+
T Consensus 274 ---TTPeHIraia~al~~~~ 290 (608)
T PRK08645 274 ---TTPEHIRAMKEALRGLK 290 (608)
T ss_pred ---CCHHHHHHHHHHHCCCC
T ss_conf ---99999999999844789
No 56
>PRK13133 consensus
Probab=91.73 E-value=1.3 Score=25.19 Aligned_cols=104 Identities=18% Similarity=0.261 Sum_probs=50.3
Q ss_pred HHHHHHCCCCEEEECCCCEECCHHHCCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC---CC
Q ss_conf 212876298726521332001043244337316887522233333554205670123443237877787642102---45
Q gi|254780812|r 60 LQPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKL---PN 136 (346)
Q Consensus 60 l~p~~r~~~DaaIlFsDIl~~~ealG~~v~f~~~~GP~~~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l---~~ 136 (346)
+.-+.+-|.|..= +|....-+---||++....... .... -.+..+++.++.+|... .-
T Consensus 35 i~~l~~~GaDiiE-----------lGiPFSDP~ADGpvIQ~A~~rA-----L~~G---~~~~~~~~~~~~~r~~~~~~~~ 95 (267)
T PRK13133 35 LEALQESGADIIE-----------LGIPYSDPIGDGPVIQNAAHTA-----IRNG---VSVRSLLELVRKARNGEGCRKI 95 (267)
T ss_pred HHHHHHCCCCEEE-----------ECCCCCCCCCCCHHHHHHHHHH-----HHCC---CCHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999975999899-----------7899888666689999999999-----9869---9899999999999730243466
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHH
Q ss_conf 32011114799999999612467765246775301372228999999999999997777754981678438311006835
Q gi|254780812|r 137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEH 216 (346)
Q Consensus 137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~ 216 (346)
++|++ +++|+ || ++.. -.-.|++...++|+|.+-|-| |+++
T Consensus 96 ~~Piv--------lMtY~------------------N~-----i~~y---G~e~F~~~~~~aGvdGlIipD-----LP~e 136 (267)
T PRK13133 96 TVPIL--------LMGYC------------------NP-----LIAY---GGDCFLADAVKAGVDGLLIPD-----LPPE 136 (267)
T ss_pred CCCEE--------EHHHH------------------HH-----HHHH---CHHHHHHHHHHCCCCEEECCC-----CCHH
T ss_conf 87787--------15645------------------79-----9984---779999999986987887789-----9968
Q ss_pred HHHHH
Q ss_conf 67776
Q gi|254780812|r 217 EFENY 221 (346)
Q Consensus 217 ~f~~f 221 (346)
+..+|
T Consensus 137 E~~~~ 141 (267)
T PRK13133 137 EAIDF 141 (267)
T ss_pred HHHHH
T ss_conf 88999
No 57
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=91.44 E-value=0.51 Score=28.07 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=35.1
Q ss_pred HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHC-CCCEEECCCCCC
Q ss_conf 99997777754981678438311006835677761272268999986308-862360243110
Q gi|254780812|r 188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKY-PNAKFISFAKGA 249 (346)
Q Consensus 188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~-~~vpiI~f~~g~ 249 (346)
+.+.++...++|||.|.|-||. |.+.|++.. ++++.+++.. |++|+-.|+.++
T Consensus 145 l~~~a~~~~~~Gad~I~i~DT~-G~~~P~~v~--------~~v~~l~~~~~~~i~ig~H~HNn 198 (333)
T TIGR03217 145 LAEQAKLMESYGADCVYIVDSA-GAMLPDDVR--------DRVRALKAVLKPETQVGFHAHHN 198 (333)
T ss_pred HHHHHHHHHHCCCCEEEECCCC-CCCCHHHHH--------HHHHHHHHHCCCCCEEEEEEECC
T ss_conf 9999999985699999975964-468999999--------99999998629975488986178
No 58
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=91.14 E-value=0.62 Score=27.44 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=36.9
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 9997777754981678438311006835677761272268999986308862360243110
Q gi|254780812|r 189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA 249 (346)
Q Consensus 189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~ 249 (346)
.++++.-+++|||-|.+-|| .|...|.++. ++++.+++..|..++-.|+.+.
T Consensus 158 ~~~~~~~~~~Ga~~I~laDT-~G~a~P~~v~--------~~i~~v~~~~~~~~i~~H~Hnd 209 (287)
T PRK05692 158 ADVAERLFALGCDEISLGDT-IGVGTPGQVR--------RVLEAVLAEFPAERLAGHFHDT 209 (287)
T ss_pred HHHHHHHHHCCCCEEECCCC-CCCCCHHHHH--------HHHHHHHHHCCCCCEEEEECCC
T ss_conf 99999998579978544765-5666999999--------9999999866887235674487
No 59
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=91.03 E-value=1.3 Score=25.31 Aligned_cols=148 Identities=14% Similarity=0.144 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHHHHHHCCCCCCCHHHH---------HH---HHCCCHHHHHHHHH
Q ss_conf 237877787642102453201111479-----99999996124677652467---------75---30137222899999
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIGFCGA-----PWTVASYMISGGFIKDHGQN---------RV---FAYQNSRAFNWLLD 182 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIGF~Gg-----P~TlasYmieG~~sk~~~~~---------~~---~~~~~p~~~~~ll~ 182 (346)
+...++.++.+|++++ ++|+|+...+ =|+-..-++|.-|..-++-. +. .+-++|+.+.++.+
T Consensus 83 le~~L~~i~~~k~~~P-~~~vIaSI~g~~~~e~w~~la~~~e~~GaDalELNiSCPn~~~~~~~G~~~gq~pe~v~~i~~ 161 (413)
T PRK08318 83 LEVNLREIRRVKRDYP-DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMVTR 161 (413)
T ss_pred HHHHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHCCCHHHHHHHHH
T ss_conf 9999999999886078-970899994587889999999986651887799955567766666555110579999999999
Q ss_pred HHHH---------------HHHHHHHHHHHCCCCEEEECCCCHHHCC--HH------------HHHHHHCCCHHHH----
Q ss_conf 9999---------------9999977777549816784383110068--35------------6777612722689----
Q gi|254780812|r 183 FLSD---------------VSAEYLIAQIHAGVDVIQIFDTHAGCLG--EH------------EFENYAARSVGRI---- 229 (346)
Q Consensus 183 ~lt~---------------~~~~yl~~Qi~aGad~iqIFDs~ag~Ls--~~------------~f~~f~~p~~kkI---- 229 (346)
.+.+ -+.+.+++-.++|||+|..+.|..++.. -+ .|--++-|.++-|
T Consensus 162 ~Vk~~~~iPV~vKLsPnvtdi~~iA~aa~~aGADgv~liNTi~~~~~iDid~~~~~p~i~~~~~~GGlSG~aikPiALr~ 241 (413)
T PRK08318 162 WVKRGSRLPVIAKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNM 241 (413)
T ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98850688569982899752899999999769988999814786553202235530210677776766645676999999
Q ss_pred HHHHHH--HCCCCEEECCCCCCC--CCHHHHHCCCCCCEEECCCC
Q ss_conf 999863--088623602431100--00134201478722304677
Q gi|254780812|r 230 ISAVRR--KYPNAKFISFAKGAG--YMLKNYRRLTDSNAIGLDWS 270 (346)
Q Consensus 230 ~~~ik~--~~~~vpiI~f~~g~~--~~l~~~~~~~g~d~isiD~~ 270 (346)
+..+.+ +.+++|||.-. |.. ...-++.- .|++++-+-..
T Consensus 242 V~~i~~~~~~~~ipIiG~G-GI~s~~Da~e~il-aGAsaVQv~Ta 284 (413)
T PRK08318 242 VAEIARDPETRGLPISGIG-GIETWRDAAEFIL-LGAGTVQVCTA 284 (413)
T ss_pred HHHHHHHCCCCCCCEEEEC-CCCCHHHHHHHHH-HCCCCEEEEEH
T ss_conf 9999863467883779756-8598999999998-27892167510
No 60
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=90.86 E-value=1.6 Score=24.61 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=70.5
Q ss_pred HHHHHHHHHHCCCCEEEECCCCHHHCC----HHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCC
Q ss_conf 999977777549816784383110068----3567776127226899998630886236024311000013420147872
Q gi|254780812|r 188 SAEYLIAQIHAGVDVIQIFDTHAGCLG----EHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSN 263 (346)
Q Consensus 188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls----~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d 263 (346)
....++.-+++|++++|+=|=...-+. .+.+.+.+. ++-+-.+++ ++|+|. +- -.+++-..++|
T Consensus 17 ~~~~ve~Al~GGV~~~QlR~K~~~~~~~yGE~~~~~~~A~----~l~~lc~~y--~~~f~v-----ND-~vdlA~~~~AD 84 (210)
T TIGR00693 17 LLARVEAALKGGVTLVQLRDKGSNALQQYGETRERLELAE----KLRELCRKY--GVPFIV-----ND-RVDLALALGAD 84 (210)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHH----HHHHHHHHC--CCCEEE-----CC-HHHHHHHHCCC
T ss_conf 8999999985896299984058754212585889999999----999999870--897688-----28-39999983798
Q ss_pred EEECCCCC-CHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCC-CE
Q ss_conf 23046779-989999707984696888846770998899999999999732599-28
Q gi|254780812|r 264 AIGLDWSV-PLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGP-FI 318 (346)
Q Consensus 264 ~isiD~~~-dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~-~I 318 (346)
+++|...- ++.+||++.++-.+.|== ..+.+++.+... | +. ..+. ||
T Consensus 85 GvHlGQ~D~p~~~aR~l~G~~~iiG~S-----~~~~~e~~~a~~-C-~~-~~gaDY~ 133 (210)
T TIGR00693 85 GVHLGQDDLPVSEARKLLGPDKIIGVS-----THNLEELAEAAA-C-EL-KEGADYI 133 (210)
T ss_pred EEEECCCCCCHHHHHHHCCCCCEEEEE-----ECCHHHHHHHHH-H-HH-HCCCCEE
T ss_conf 776678889989999853899579853-----379899999998-7-64-0789888
No 61
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=90.81 E-value=0.91 Score=26.28 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=11.7
Q ss_pred HHHHHHHHCCCCCCHHHHHH
Q ss_conf 77876421024532011114
Q gi|254780812|r 125 QSISILRKKLPNHITLIGFC 144 (346)
Q Consensus 125 eAi~~~k~~l~~~~pLIGF~ 144 (346)
-|+..+|+++ ++|++|-+
T Consensus 81 ~al~~LR~~~--~iPVvGvi 98 (269)
T COG0796 81 VALEDLREKF--DIPVVGVI 98 (269)
T ss_pred HHHHHHHHHC--CCCEEEEC
T ss_conf 9999999867--99989953
No 62
>PRK13121 consensus
Probab=90.24 E-value=1.8 Score=24.25 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA 198 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a 198 (346)
.+..+++.++.+|++ ..++|++= ++|. || ++..- .-+|++...++
T Consensus 77 ~~~~~~~~~~~~r~~-~~~~Pivl--------M~Y~------------------N~-----i~~yG---~e~F~~~~~~a 121 (265)
T PRK13121 77 SLRQVLAMVKEFRET-NQTTPVVL--------MGYA------------------NP-----IERMG---YDAFAAAARAA 121 (265)
T ss_pred CHHHHHHHHHHHHCC-CCCCCEEE--------EEHH------------------HH-----HHHHH---HHHHHHHHHHC
T ss_conf 846779999983103-79999898--------6214------------------59-----99971---99999999872
Q ss_pred CCCEEEECCCCHHHCCHHHHHHH
Q ss_conf 98167843831100683567776
Q gi|254780812|r 199 GVDVIQIFDTHAGCLGEHEFENY 221 (346)
Q Consensus 199 Gad~iqIFDs~ag~Ls~~~f~~f 221 (346)
|+|.+-|-| |++++-.+|
T Consensus 122 GvdGlIipD-----LP~eE~~~~ 139 (265)
T PRK13121 122 GVDGVLVVD-----YPPEECEEF 139 (265)
T ss_pred CCCEEECCC-----CCHHHHHHH
T ss_conf 987343489-----998999999
No 63
>PRK13120 consensus
Probab=90.00 E-value=1.9 Score=24.12 Aligned_cols=109 Identities=18% Similarity=0.306 Sum_probs=55.1
Q ss_pred CHHHHHHH-HHHHHHHCCCCEE---EECCCCEECCHHHCCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 79999998-7212876298726---5213320010432443373168875222333335542056701234432378777
Q gi|254780812|r 51 TPEYTVEL-TLQPIRRYNFDAA---ILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQS 126 (346)
Q Consensus 51 ~pela~ev-tl~p~~r~~~Daa---IlFsDIl~~~ealG~~v~f~~~~GP~~~p~~~~~~~~~~~~~~~~~~~l~~v~eA 126 (346)
+|++.+-. .+..+.+-|.|.. |-||| +--.||++........ ... -.+..+++-
T Consensus 31 ~P~~~~t~~~l~~l~~~GaDiiElGiPFSD--------------PvADGPvIQ~A~~rAL-----~~G---~~l~~vl~~ 88 (285)
T PRK13120 31 DPSPQATVPLMHALVRAGADLVELGVPFSD--------------PMADGPVVQRAAERAI-----AQG---VGLRRVLEL 88 (285)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCC--------------CCCCCHHHHHHHHHHH-----HCC---CCHHHHHHH
T ss_conf 899899999999999769999997898787--------------4566899999999999-----769---984469999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 87642102453201111479999999961246776524677530137222899999999999999777775498167843
Q gi|254780812|r 127 ISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF 206 (346)
Q Consensus 127 i~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF 206 (346)
++.+|++. .++|++ |++|. || ++.. -.-+|++.--++|+|.+-|-
T Consensus 89 v~~~r~~~-~~~Piv--------lM~Y~------------------Np-----i~~y---G~e~F~~~~~~aGvdGlIIp 133 (285)
T PRK13120 89 VADFRRDD-SVTPVV--------LMGYA------------------NP-----IERM---GQRAFAQAAQAAGVDGVLVV 133 (285)
T ss_pred HHHHHHCC-CCCCEE--------EEEHH------------------HH-----HHHH---HHHHHHHHHHHCCCCEEECC
T ss_conf 99987348-988889--------86105------------------49-----9998---79999999998398779647
Q ss_pred CCCHHHCCHHHHHHH
Q ss_conf 831100683567776
Q gi|254780812|r 207 DTHAGCLGEHEFENY 221 (346)
Q Consensus 207 Ds~ag~Ls~~~f~~f 221 (346)
| |++++-.+|
T Consensus 134 D-----LP~EE~~~~ 143 (285)
T PRK13120 134 D-----YPPEEVDEF 143 (285)
T ss_pred C-----CCHHHHHHH
T ss_conf 9-----997999999
No 64
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=89.91 E-value=0.95 Score=26.15 Aligned_cols=118 Identities=22% Similarity=0.287 Sum_probs=57.2
Q ss_pred CCCEEEECCCCEECCHHHCCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 98726521332001043244337316887522233333554205670123443237877787642102453201111479
Q gi|254780812|r 67 NFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGA 146 (346)
Q Consensus 67 ~~DaaIlFsDIl~~~ealG~~v~f~~~~GP~~~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~Gg 146 (346)
|+|-=.+| |-|==++.|-+.++=..+.|=+.|-..+-.-+.+++.... .+ |.|+.+- -+||-. +|
T Consensus 658 GiD~FRvF-DsLN~l~~l~l~~dAv~~~gkv~EAAicYtGDil~~~r~K-Yd-L~YYt~l----A~eL~~-------aG- 722 (1169)
T TIGR01235 658 GIDIFRVF-DSLNWLENLKLGMDAVKEAGKVVEAAICYTGDILDPARKK-YD-LKYYTNL----AEELVK-------AG- 722 (1169)
T ss_pred CCEEEECC-CCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCC-CC-HHHHHHH----HHHHHH-------CC-
T ss_conf 83078700-1113321020163677750997999975200326888974-37-7889999----999997-------09-
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH----------------HHHHHHHHHHHCCCCEEEEC-CCC
Q ss_conf 9999999612467765246775301372228999999999----------------99999777775498167843-831
Q gi|254780812|r 147 PWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSD----------------VSAEYLIAQIHAGVDVIQIF-DTH 209 (346)
Q Consensus 147 P~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~----------------~~~~yl~~Qi~aGad~iqIF-Ds~ 209 (346)
++++ +.||..=.+ +|+.+..|+.-|-+ .-+.-..+.++||||+|-+. ||.
T Consensus 723 -----aHIL---~iKDMAGlL-----KP~AAk~L~~ALre~~PD~PiH~HTHDtSG~ava~~~aaveAGvDvvDvAv~sm 789 (1169)
T TIGR01235 723 -----AHIL---GIKDMAGLL-----KPAAAKLLIKALREKIPDLPIHLHTHDTSGAAVASMLAAVEAGVDVVDVAVDSM 789 (1169)
T ss_pred -----CCEE---EEHHHHCCC-----HHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_conf -----8034---301011244-----289999999999732799856862666126899999999875886114567641
Q ss_pred HHH
Q ss_conf 100
Q gi|254780812|r 210 AGC 212 (346)
Q Consensus 210 ag~ 212 (346)
+|+
T Consensus 790 SG~ 792 (1169)
T TIGR01235 790 SGL 792 (1169)
T ss_pred CCC
T ss_conf 045
No 65
>PRK13118 consensus
Probab=89.84 E-value=1.9 Score=24.03 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA 198 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a 198 (346)
.+..+++.++.+|++. .++|++- ++| -|| ++.. -.-+|++...++
T Consensus 77 ~~~~~~~~v~~~r~~~-~~~Pivl--------M~Y------------------~N~-----i~~~---G~e~F~~~~~~~ 121 (269)
T PRK13118 77 GLADVLQMVREFRQGD-QTTPVVL--------MGY------------------LNP-----IEIY---GYERFVAQAKEA 121 (269)
T ss_pred CHHHHHHHHHHHHHCC-CCCCEEE--------EEE------------------CCH-----HHHH---HHHHHHHHHHHC
T ss_conf 6889999999986438-9999899--------740------------------007-----8786---399999999985
Q ss_pred CCCEEEECC
Q ss_conf 981678438
Q gi|254780812|r 199 GVDVIQIFD 207 (346)
Q Consensus 199 Gad~iqIFD 207 (346)
|+|.+-|-|
T Consensus 122 GvdGvIipD 130 (269)
T PRK13118 122 GVDGLILVD 130 (269)
T ss_pred CCCEEECCC
T ss_conf 997464589
No 66
>PRK00915 2-isopropylmalate synthase; Validated
Probab=89.73 E-value=0.99 Score=26.04 Aligned_cols=54 Identities=28% Similarity=0.332 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC---CCEEECCCCC
Q ss_conf 99999977777549816784383110068356777612722689999863088---6236024311
Q gi|254780812|r 186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP---NAKFISFAKG 248 (346)
Q Consensus 186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~---~vpiI~f~~g 248 (346)
++..+.+++-+++|||.|.+-||.+. ..|..+.++ ++.+++..| ++|+-.||.+
T Consensus 149 ~~l~~~~~aa~~aGa~~i~l~DTvG~-~~P~~~~~~--------i~~l~~~~p~~~~v~i~vH~HN 205 (511)
T PRK00915 149 DFLCRVVEAAIDAGATTINIPDTVGY-TTPEEFGEL--------IKTLRERVPNIDKAIISVHCHN 205 (511)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCC-CCHHHHHHH--------HHHHHHHCCCCCCCEEEEEECC
T ss_conf 99999999987649999864566677-693899999--------9999986488656248998418
No 67
>PRK13112 consensus
Probab=89.51 E-value=2 Score=23.87 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA 198 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a 198 (346)
.+..+++-++.+|++. .++|++ |++|. || ++.. -.-+|++...++
T Consensus 78 ~~~~~~~~~~~ir~~~-~~~Piv--------lM~Y~------------------N~-----i~~~---G~e~F~~~~~~a 122 (279)
T PRK13112 78 TLAKTLYLAREFRKDD-DTTPIV--------LMGYY------------------NP-----IYIY---GVERFLTDAKAA 122 (279)
T ss_pred CHHHHHHHHHHHHCCC-CCCCEE--------EEEEC------------------HH-----HHHH---CHHHHHHHHHHC
T ss_conf 6889999999851348-998879--------98512------------------49-----9884---799999999973
Q ss_pred CCCEEEECCCCHHHCCHHHHHHH
Q ss_conf 98167843831100683567776
Q gi|254780812|r 199 GVDVIQIFDTHAGCLGEHEFENY 221 (346)
Q Consensus 199 Gad~iqIFDs~ag~Ls~~~f~~f 221 (346)
|+|.+-|-| |++++-.+|
T Consensus 123 GvdGvIipD-----LP~eE~~~~ 140 (279)
T PRK13112 123 GVDGLIVVD-----LPPEMDAEL 140 (279)
T ss_pred CCCEEEECC-----CCHHHHHHH
T ss_conf 998798469-----997888999
No 68
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.49 E-value=2 Score=23.86 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 32378777876421024532011
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLI 141 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLI 141 (346)
.+..+++.++.+|++. ++|++
T Consensus 60 ~~~~~~~~~~~~r~~~--~~piv 80 (242)
T cd04724 60 TLKDVLELVKEIRKKN--TIPIV 80 (242)
T ss_pred CHHHHHHHHHHHHHCC--CCCEE
T ss_conf 4999999999987347--98889
No 69
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal; InterPro: IPR012714 Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacteria), a toroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=89.29 E-value=2.1 Score=23.76 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=81.0
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 30137222899999999999999777775498167843831100683567776127226899998630886236024311
Q gi|254780812|r 169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG 248 (346)
Q Consensus 169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g 248 (346)
.-.++|+....+|+.=...+.+|...-+++|||+| +..+--++.+.-|+. ++ | |+=.|.
T Consensus 252 i~I~~P~Qi~~FldqEe~~Lke~VD~i~~~GAnVV---------fCQKGIDD~Aq~yLa-------k~--G---IlAvRR 310 (522)
T TIGR02339 252 ISITSPDQIKKFLDQEEAMLKEMVDKIADAGANVV---------FCQKGIDDLAQHYLA-------KA--G---ILAVRR 310 (522)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE---------EECCCHHHHHHHHHH-------HC--C---EEEECC
T ss_conf 33078899999999999999999889998289879---------822886899999871-------05--6---022043
Q ss_pred -CCCCHHHHHCCCCCCEEE-CCCCC--CHHHH-----HHHCCC--EEEECCCCHH---HH-CCCHHHHHHHHHHHHHHH
Q ss_conf -000013420147872230-46779--98999-----970798--4696888846---77-099889999999999973
Q gi|254780812|r 249 -AGYMLKNYRRLTDSNAIG-LDWSV--PLSFA-----LELQKE--GPVQGNLDPM---RL-VVGNQVMIDGVNAILDVL 312 (346)
Q Consensus 249 -~~~~l~~~~~~~g~d~is-iD~~~--dl~~a-----~~~~~~--~~lqGNldP~---~L-~~~~e~i~~~~~~~l~~~ 312 (346)
...-++.+.+.||+..+| ++.-. ||..| ++.+++ ..++|-=||. +| .|+.|.|-.|+.+-|+.+
T Consensus 311 VKkSDi~~LarATGA~i~s~i~e~~~~DLG~A~lVE~r~vG~~~m~Fveg~knpKAVtiLlRGgtehVVDE~ERsl~DA 389 (522)
T TIGR02339 311 VKKSDIEKLARATGAKIVSSIKEITESDLGYAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERSLQDA 389 (522)
T ss_pred CCHHHHHHHHHHCCCCEECCHHHCCHHHCCCEEEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCEEHHHHHHHHHHH
T ss_conf 3533799998731884125731169636761422686542686238884079983578999658750102134668889
No 70
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=89.00 E-value=0.94 Score=26.20 Aligned_cols=67 Identities=25% Similarity=0.267 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEE
Q ss_conf 9999977777549816784383110068356777612722689999863088623602431100001342014787223
Q gi|254780812|r 187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAI 265 (346)
Q Consensus 187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~i 265 (346)
...+-+.+.++||||+|. .|+.-|. | .+..+.++.+|+.+|++|+|.=..-+...-.++.+ .|+|++
T Consensus 238 ~~~eRa~~Lv~aGvDvlv-IDtAhGh-s---------~~v~~~ik~ik~~~p~v~vIaGNVaT~~~a~~Li~-aGAD~v 304 (499)
T PTZ00314 238 EDKERAAALIDAGVDVLV-LDSSQGN-S---------IYQIDFIKWIKSTYPHLEVIAGNVVTQDQAKNLID-AGADGI 304 (499)
T ss_pred CHHHHHHHHHHCCCCEEE-EECCCCC-C---------HHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHH-CCCCEE
T ss_conf 489999999986998999-8168877-2---------78999999988527988467643310999999997-499879
No 71
>PRK13113 consensus
Probab=88.96 E-value=2.2 Score=23.60 Aligned_cols=63 Identities=19% Similarity=0.291 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA 198 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a 198 (346)
.+..+++-++.+|++- .++|++ +++|. || ++.. -.-+|++...++
T Consensus 77 ~~~~~~~~v~~~r~~~-~~~Piv--------lM~Y~------------------N~-----i~~~---G~e~F~~~~~~~ 121 (263)
T PRK13113 77 TLDRTLDMVRAFRKED-DTTPIV--------MMGYY------------------NP-----IYSR---GVDRFLAEAKEA 121 (263)
T ss_pred CHHHHHHHHHHHHCCC-CCCCEE--------EEECH------------------HH-----HHHH---HHHHHHHHHHHC
T ss_conf 3889999999751238-998889--------98313------------------68-----9885---699999998777
Q ss_pred CCCEEEECCCCHHHCCHHHHHHH
Q ss_conf 98167843831100683567776
Q gi|254780812|r 199 GVDVIQIFDTHAGCLGEHEFENY 221 (346)
Q Consensus 199 Gad~iqIFDs~ag~Ls~~~f~~f 221 (346)
|+|.+-|-| |++++-.+|
T Consensus 122 GvdGvIipD-----LP~eE~~~~ 139 (263)
T PRK13113 122 GIDGLIVVD-----LPPEEDSEL 139 (263)
T ss_pred CCCEEEECC-----CCHHHHHHH
T ss_conf 943697179-----997888999
No 72
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=88.75 E-value=1.1 Score=25.78 Aligned_cols=67 Identities=27% Similarity=0.367 Sum_probs=40.3
Q ss_pred HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf 9999777775498167843831100683567776127226899998630886236024311000013420147872230
Q gi|254780812|r 188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIG 266 (346)
Q Consensus 188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~is 266 (346)
..+-+.+.+++|+|+| +.|+.-|. |. +..+.++.+|+.+|++++|.=.-.+...-.++.+ .|+|++=
T Consensus 224 ~~eRa~~Lv~aGvDvi-vIDtAhGh-s~---------~vi~~ik~ik~~~p~~~iIaGNVaT~e~a~~Li~-aGAD~vK 290 (467)
T pfam00478 224 DLERAEALVEAGVDVI-VIDSAHGH-SE---------YVLEMIKWIKKKYPDLDVIAGNVVTAEAARELID-AGADAVK 290 (467)
T ss_pred HHHHHHHHHHCCCCEE-EEECCCCC-CH---------HHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHH-HCCCEEE
T ss_conf 9999999987699889-97344544-18---------8999999987407877378510058999999997-0777577
No 73
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=88.64 E-value=0.96 Score=26.13 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEE
Q ss_conf 99999977777549816784383110068356777612722689999863088623602431100001342014787223
Q gi|254780812|r 186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAI 265 (346)
Q Consensus 186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~i 265 (346)
+...+-+.+.++||||++ +.|+.-|. |. + .-+.++.+|+.+|++|+|.=..-+.....++.+ .|+|++
T Consensus 227 ~~~~eRa~~Lv~AGvDvi-vIDtAhGh-s~-----~----vi~~ik~ik~~~~~v~viaGNv~T~~~a~~L~~-aGaD~v 294 (486)
T PRK05567 227 ADNEERAEALVKAGVDVL-VVDTAHGH-SE-----G----VLDRVREIKAKYPDVQIIAGNVATAEAARALIE-AGADAV 294 (486)
T ss_pred CCHHHHHHHHHHCCCCEE-EEECCCCC-HH-----H----HHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHH-CCCCEE
T ss_conf 018999999997699889-95044521-57-----7----899999997407877368751201999999997-298769
Q ss_pred EC
Q ss_conf 04
Q gi|254780812|r 266 GL 267 (346)
Q Consensus 266 si 267 (346)
=+
T Consensus 295 kV 296 (486)
T PRK05567 295 KV 296 (486)
T ss_pred EE
T ss_conf 96
No 74
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=88.02 E-value=1.7 Score=24.37 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=31.2
Q ss_pred HHHHHCCCCCCEEECCCCCC--------HHHHHHHCCCE-EEECCCCHHHHCCCHHHHHHHHHHHHHHHCC-------CC
Q ss_conf 13420147872230467799--------89999707984-6968888467709988999999999997325-------99
Q gi|254780812|r 253 LKNYRRLTDSNAIGLDWSVP--------LSFALELQKEG-PVQGNLDPMRLVVGNQVMIDGVNAILDVLGS-------GP 316 (346)
Q Consensus 253 l~~~~~~~g~d~isiD~~~d--------l~~a~~~~~~~-~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~-------~~ 316 (346)
...+.+ .|+|+|=||...- ++|.|+..+++ +|-||+=. .+.++.+++++.+ .|
T Consensus 244 ~~~L~~-AGvDv~viDsshGhs~~vl~~ik~~k~~Yp~~~iiaGNVaT----------~~~a~~LI~AgADg~rVGiGpG 312 (476)
T TIGR01302 244 AEALVE-AGVDVIVIDSSHGHSIYVLDSIKKIKKTYPDLDIIAGNVAT----------AEQAKALIDAGADGLRVGIGPG 312 (476)
T ss_pred HHHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCC----------HHHHHHHHHCCCCEEEECCCCC
T ss_conf 999996-59658998166545378999999998638805799434411----------7889889852888789836889
Q ss_pred CEEEE----CCCCCCCCCHHH
Q ss_conf 28960----897633668899
Q gi|254780812|r 317 FIFNL----GHGITPQVDPKN 333 (346)
Q Consensus 317 ~I~nL----GhGi~p~tp~eN 333 (346)
=||-+ |||+|.-|=+-.
T Consensus 313 SICTTr~V~gVGvPQ~TAv~~ 333 (476)
T TIGR01302 313 SICTTRIVAGVGVPQITAVYD 333 (476)
T ss_pred CCCEEEEEEECCCHHHHHHHH
T ss_conf 811001565127626889999
No 75
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=87.86 E-value=1.4 Score=25.07 Aligned_cols=48 Identities=33% Similarity=0.431 Sum_probs=27.1
Q ss_pred HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 777775498167843831100683567776127226899998630886236024311
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG 248 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g 248 (346)
+++-+++||+.|.+.||. |...|..+.+ ++..+++..+++++-.||.+
T Consensus 164 ~~aa~~aGa~~i~l~DTv-G~~~P~~v~~--------~i~~l~~~~~~~~isvH~HN 211 (530)
T PRK12344 164 LKAAAEAGADWVVLCDTN-GGTLPHEVAA--------IVAEVRARLPGAPLGIHAHN 211 (530)
T ss_pred HHHHHHCCCCEEEECCCC-CCCCHHHHHH--------HHHHHHHHCCCCEEEEEECC
T ss_conf 999985299600237886-5558899999--------99999974899827998459
No 76
>KOG3253 consensus
Probab=87.67 E-value=1.9 Score=24.04 Aligned_cols=195 Identities=15% Similarity=0.193 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC---CHHH-HHHHHHHH--------
Q ss_conf 44323787778764210245320111147999999996124677652467753013---7222-89999999--------
Q gi|254780812|r 117 LNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQ---NSRA-FNWLLDFL-------- 184 (346)
Q Consensus 117 ~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~---~p~~-~~~ll~~l-------- 184 (346)
...+..+++++..+|-+++ ||+-||+.|+...+-..++..+.+ +|.. .+...+.+
T Consensus 115 pp~~a~yl~ilqtLkgkiP-------------tL~d~ml~g~~~~~~~E~ms~ilkK~kep~Vn~~~kps~v~~spl~i~ 181 (784)
T KOG3253 115 PPAPAPYLVILQTLKGKIP-------------TLADYMLDGNLNEGVNETMSTILKKRKEPGVNEDIKPSVVPASPLAIK 181 (784)
T ss_pred CCCCHHHHHHHHHHHCCCC-------------HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 7632029999987532475-------------087887506713106888899876430567776667240357731796
Q ss_pred -------HHHHHHH--HHHHHHCCCCEEEE--CCC--CHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf -------9999999--77777549816784--383--1100683567776127226899998630886236024311000
Q gi|254780812|r 185 -------SDVSAEY--LIAQIHAGVDVIQI--FDT--HAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGY 251 (346)
Q Consensus 185 -------t~~~~~y--l~~Qi~aGad~iqI--FDs--~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~ 251 (346)
....-.| ...+..---+++++ ||- -+|-.+-.+-.|+..-+.+-++.++..++|..|||+..+..+.
T Consensus 182 aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG~nI~h~ae~~vSf~r~kvlei~gefpha~IiLvGrsmGA 261 (784)
T KOG3253 182 APSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGGANIKHAAEYSVSFDRYKVLEITGEFPHAPIILVGRSMGA 261 (784)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 26888787663577769998754200210002455677777234888888777765433322033789855887424473
Q ss_pred CHHHHHCCCCCCEEECCCCCCHHHHH---------------HH-CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 01342014787223046779989999---------------70-798469688884677099889999999999973259
Q gi|254780812|r 252 MLKNYRRLTDSNAIGLDWSVPLSFAL---------------EL-QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSG 315 (346)
Q Consensus 252 ~l~~~~~~~g~d~isiD~~~dl~~a~---------------~~-~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~ 315 (346)
.+-......+.|+. |+-.+++.+.. ++ .+-.+++|-=|+ ..+++.+++-..++-..-. -
T Consensus 262 lVachVSpsnsdv~-V~~vVCigypl~~vdgprgirDE~Lldmk~PVLFV~Gsnd~---mcspn~ME~vreKMqA~~e-l 336 (784)
T KOG3253 262 LVACHVSPSNSDVE-VDAVVCIGYPLDTVDGPRGIRDEALLDMKQPVLFVIGSNDH---MCSPNSMEEVREKMQAEVE-L 336 (784)
T ss_pred EEEEEECCCCCCCE-EEEEEEECCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCC---CCCHHHHHHHHHHHHCCCE-E
T ss_conf 01687512567734-78999715635677766688625667417966998368756---6798899999998625516-9
Q ss_pred CCEEEECCCCCCCC
Q ss_conf 92896089763366
Q gi|254780812|r 316 PFIFNLGHGITPQV 329 (346)
Q Consensus 316 ~~I~nLGhGi~p~t 329 (346)
-+|=..+|-+-+.+
T Consensus 337 hVI~~adhsmaipk 350 (784)
T KOG3253 337 HVIGGADHSMAIPK 350 (784)
T ss_pred EEECCCCCCCCCCC
T ss_conf 99657774424776
No 77
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=87.50 E-value=1.3 Score=25.21 Aligned_cols=66 Identities=18% Similarity=0.295 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf 999777775498167843831100683567776127226899998630886236024311000013420147872230
Q gi|254780812|r 189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIG 266 (346)
Q Consensus 189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~is 266 (346)
.+-+.+.+++|||+|.| |+..|. .+ +..+.++.+|+.+|++|+|.=...+...-.++.+ +|+|++=
T Consensus 155 ~era~~Lv~AGvD~lvI-D~AhGh------s~----~~~e~ik~ik~~~p~v~VIaGNVaT~~~a~~Li~-aGAD~Vk 220 (404)
T PRK06843 155 IERVEELVKAHVDILVI-DSAHGH------ST----RIIELVKTIKNKYPNLDLIAGNIVTKEAALDLIN-VGADCLK 220 (404)
T ss_pred HHHHHHHHHCCCCEEEE-ECCCCC------HH----HHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHH-HCCCEEE
T ss_conf 99999999769999999-688752------17----8999999999767996166303057999999998-1989999
No 78
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=87.07 E-value=1.1 Score=25.65 Aligned_cols=61 Identities=18% Similarity=0.346 Sum_probs=42.7
Q ss_pred HHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC-CCHHHHHCCCCCCEEECCCC
Q ss_conf 77549816784383110068356777612722689999863088623602431100-00134201478722304677
Q gi|254780812|r 195 QIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG-YMLKNYRRLTDSNAIGLDWS 270 (346)
Q Consensus 195 Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~-~~l~~~~~~~g~d~isiD~~ 270 (346)
-+++|+|.||+ |- .+|++ +++.++.+++..+.+ .+-.++|.+ ..+.+|.. +|+|.||+..-
T Consensus 96 a~~~~~d~I~L-Dn----~spe~--------l~~~v~~l~~~~~~v-~iEaSGgI~~~ni~~yA~-tGvD~IS~gal 157 (169)
T pfam01729 96 ALEAGADIIML-DN----FSPEE--------VREAVEELDERAGRV-LLEVSGGITLDNVLEYAK-TGVDVISVGAL 157 (169)
T ss_pred HHHCCCCEEEE-CC----CCHHH--------HHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHH-CCCCEEECCHH
T ss_conf 98469989997-79----99999--------999999999758967-999618999999999997-69999985864
No 79
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.07 E-value=0.83 Score=26.58 Aligned_cols=64 Identities=17% Similarity=0.320 Sum_probs=31.6
Q ss_pred HHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC-CCHHHHHCCCCCCEEECCC
Q ss_conf 977777549816784383110068356777612722689999863088623602431100-0013420147872230467
Q gi|254780812|r 191 YLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG-YMLKNYRRLTDSNAIGLDW 269 (346)
Q Consensus 191 yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~-~~l~~~~~~~g~d~isiD~ 269 (346)
-+..-+++|||+||+ |- .+|++. ++.++.+++.+|++ .|-.++|.+ ..+.+|.+ +|+|.||+.+
T Consensus 193 ea~~a~~~gaDiI~L-Dn----~~~e~~--------k~~v~~~~~~~~~v-~ieaSGGI~~~ni~~yA~-~GvD~Is~g~ 257 (272)
T PRK05848 193 EAKEAMNAGADIVMC-DN----MSVEET--------KEIVAYRNANYPHV-LLEASGNISLETINAYAK-SGVDAISSGS 257 (272)
T ss_pred HHHHHHHCCCCEEEE-CC----CCHHHH--------HHHHHHHHCCCCCE-EEEEECCCCHHHHHHHHH-CCCCEEECCH
T ss_conf 999998459998995-89----999999--------99999874648877-999979998999999996-5999998797
No 80
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.03 E-value=0.94 Score=26.19 Aligned_cols=11 Identities=27% Similarity=0.151 Sum_probs=5.5
Q ss_pred CCCCEEECCCC
Q ss_conf 78722304677
Q gi|254780812|r 260 TDSNAIGLDWS 270 (346)
Q Consensus 260 ~g~d~isiD~~ 270 (346)
.|+|.+=+|+-
T Consensus 212 ~g~DiI~LDnm 222 (285)
T PRK07428 212 YGADIIMLDNM 222 (285)
T ss_pred CCCCEEEECCC
T ss_conf 69999998799
No 81
>TIGR00973 leuA_bact 2-isopropylmalate synthase; InterPro: IPR005671 The branched-chain amino acids are synthesised by a common pathway that leads from pyruvate and alpha-ketobutyrate to valine and isoleucine, and a branch that leads from the immediate precursor of valine, alpha-ketoisovalerate, to leucine . This pathway operates in archaea, bacteria, fungi and plants, but not mammals, making the enzymes suitable targets for the development of novel antibiotics and herbicides. Isopropylmalate synthase is the enzyme responsible for the the first committed step in the leucine branch of this biosynthetic pathway, the conversion of alpha-ketoisovalerate to alpha-isopropylmalate. It is either dimeric or tetrameric, depending on the organism, with a monomer molecular mass of 60-70 kDa, a dependence on divalent metal ions for activity, and an alkaline pH optimum , , , . Like many other biosynthetic enzymes it is subject to feedback inhibition by the end product of the pathway, leucine. This entry represents the isopropylmalate synthase most commonly found in bacteria. A related form of this enzyme is found mainly in eukaryotes and some other bacteria (IPR005668 from INTERPRO). A homologous family in archaea may represent isozymes and/or related enzymes (IPR005675 from INTERPRO). ; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process.
Probab=86.83 E-value=1.8 Score=24.27 Aligned_cols=54 Identities=28% Similarity=0.374 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCC---EEECCCCC
Q ss_conf 9999997777754981678438311006835677761272268999986308862---36024311
Q gi|254780812|r 186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNA---KFISFAKG 248 (346)
Q Consensus 186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~v---piI~f~~g 248 (346)
+++.+-+.+-|+|||-+|.|-|| .|..-|..|- .|++.+++.-||+ -+..||.+
T Consensus 151 ~fL~~~~E~AI~AGATtINiPDT-VGY~~P~EyG--------~lI~~~~e~VPNIdka~lSVHcHd 207 (514)
T TIGR00973 151 EFLARVVEAAINAGATTINIPDT-VGYALPAEYG--------NLIKGLRENVPNIDKAILSVHCHD 207 (514)
T ss_pred HHHHHHHHHHHHCCCEEEECCCC-HHCCCHHHHH--------HHHHHHHCCCCCCCEEEEEEECCC
T ss_conf 89999999998279828726864-0003447899--------999998517888461178761447
No 82
>PRK00865 glutamate racemase; Provisional
Probab=86.75 E-value=2.8 Score=22.85 Aligned_cols=110 Identities=10% Similarity=0.093 Sum_probs=43.6
Q ss_pred HHCCCCEEEECCC-CHHHCCHHHH-HHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCC--CHHH-HHCCCCCCEEECCCC
Q ss_conf 7549816784383-1100683567-776127226899998630886236024311000--0134-201478722304677
Q gi|254780812|r 196 IHAGVDVIQIFDT-HAGCLGEHEF-ENYAARSVGRIISAVRRKYPNAKFISFAKGAGY--MLKN-YRRLTDSNAIGLDWS 270 (346)
Q Consensus 196 i~aGad~iqIFDs-~ag~Ls~~~f-~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~--~l~~-~~~~~g~d~isiD~~ 270 (346)
+..++.+.++--+ ++.++....+ .+-+...+++.++.+++...++ +|. |++| .+.+ +.+..+.++-=+|..
T Consensus 131 ~~~~~~V~~~~cp~Lv~liE~g~~~~~~~~~~l~~~L~~~~~~~iDt-lIL---GCTHYP~l~~~i~~~~~~~v~iIDpa 206 (262)
T PRK00865 131 FAPDCEVESLACPELVPLVEEGILGGPVLLEVLREYLAPLLAAGIDT-LVL---GCTHYPLLKPEIQQVLGEGVTLIDSG 206 (262)
T ss_pred HCCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCE-EEE---CCCCHHHHHHHHHHHCCCCCEEECCH
T ss_conf 68998999658715999998356787999999999987764069988-997---67670778999999759998997288
Q ss_pred CCHHHH-HHH-CCCEEE-ECCCCHH-HHC--CCHHHHHHHHHHHH
Q ss_conf 998999-970-798469-6888846-770--99889999999999
Q gi|254780812|r 271 VPLSFA-LEL-QKEGPV-QGNLDPM-RLV--VGNQVMIDGVNAIL 309 (346)
Q Consensus 271 ~dl~~a-~~~-~~~~~l-qGNldP~-~L~--~~~e~i~~~~~~~l 309 (346)
...... ++. ..+.-+ .++-.+. .++ ++++.+++..++.|
T Consensus 207 ~~vA~~v~~~L~~~~l~~~~~~~~~~~f~tT~~~~~f~~~a~~fl 251 (262)
T PRK00865 207 EAIARRVARLLEESGLLNPPDAPPAHRFTTTGDPEAFKRLAQRWL 251 (262)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHC
T ss_conf 999999999998768666789998769997999999999999976
No 83
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=86.72 E-value=3 Score=22.69 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9999999999977777549816784
Q gi|254780812|r 181 LDFLSDVSAEYLIAQIHAGVDVIQI 205 (346)
Q Consensus 181 l~~lt~~~~~yl~~Qi~aGad~iqI 205 (346)
.+---+.+.+.++.|+++||+++-|
T Consensus 380 ~~~d~~~~l~~A~~Qv~~GA~vLDV 404 (1229)
T PRK09490 380 KEEDYDEALDVARQQVENGAQIIDI 404 (1229)
T ss_pred HCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8439899999999999758978874
No 84
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=86.38 E-value=1.3 Score=25.21 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=34.4
Q ss_pred HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHC
Q ss_conf 7777754981678438311006835677761272268999986308862360243110000134201
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRR 258 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~ 258 (346)
++.--++|+|+++|-=|. -++.++. -+.++.+|+.+ ++|+|.||++.+ .+.+.++
T Consensus 19 Ak~~~~aGtD~ilvGGs~--Gi~e~~l--------d~~v~~ik~~~-~~p~iLFPG~~~-~Ls~~AD 73 (212)
T TIGR01769 19 AKNAKEAGTDAILVGGSL--GISEDKL--------DQVVKKIKEIT-NLPVILFPGSVN-LLSRKAD 73 (212)
T ss_pred HHHHHHCCCCEEEECCCC--CCCHHHH--------HHHHHHHHHCC-CCCEEECCCCHH-HHHHHHH
T ss_conf 999985289889836633--7335478--------89999864015-786688278845-7888865
No 85
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=86.36 E-value=3.1 Score=22.56 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 32378777876421024532011
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLI 141 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLI 141 (346)
.+..+++.++.+|++. ++|++
T Consensus 69 ~~~~~f~~~~~~r~~~--~~piv 89 (256)
T PRK13111 69 TLADVLELLREIRAKP--TIPIV 89 (256)
T ss_pred CHHHHHHHHHHHHCCC--CCCEE
T ss_conf 6999999999986068--99889
No 86
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.34 E-value=3.1 Score=22.55 Aligned_cols=93 Identities=19% Similarity=0.279 Sum_probs=45.5
Q ss_pred HHHHHHCCCCEEEECCCCEECCHHHCCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 21287629872652133200104324433731688752223333355420567012344323787778764210245320
Q gi|254780812|r 60 LQPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHIT 139 (346)
Q Consensus 60 l~p~~r~~~DaaIlFsDIl~~~ealG~~v~f~~~~GP~~~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~p 139 (346)
+.-+.+-|.|..= +|....=+--.||++....... + ... -.+..+++.++.+|++. ++|
T Consensus 35 ~~~l~~~GaDiiE-----------lGiPfSDP~ADGpvIq~A~~~A---L--~~G---~~~~~~~~~v~~~r~~~--~~P 93 (263)
T CHL00200 35 LKILDKKGADIIE-----------LGIPYSDPLADGPIIQEASNRA---L--KQG---INLNKILSILSEVNGEI--KAP 93 (263)
T ss_pred HHHHHHCCCCEEE-----------ECCCCCCCCCCCHHHHHHHHHH---H--HCC---CCHHHHHHHHHHHHHCC--CCC
T ss_conf 9999976999999-----------7898888666589999999999---9--779---87778999999986067--998
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 11114799999999612467765246775301372228999999999999997777754981678438
Q gi|254780812|r 140 LIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFD 207 (346)
Q Consensus 140 LIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFD 207 (346)
++ |++|. || ++.. -.-+|++...++|+|.+-|-|
T Consensus 94 iv--------lMtY~------------------N~-----i~~y---G~e~F~~~~~~~GvdGlIipD 127 (263)
T CHL00200 94 IV--------IFTYY------------------NP-----VLHY---GINKFIKKISQAGVKGLIIPD 127 (263)
T ss_pred EE--------EEEEH------------------HH-----HHHC---CHHHHHHHHHHCCCCEEECCC
T ss_conf 89--------98620------------------68-----8873---889999999984998687479
No 87
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=86.18 E-value=0.92 Score=26.24 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=39.5
Q ss_pred HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEE
Q ss_conf 999977777549816784383110068356777612722689999863088623602431100001342014787223
Q gi|254780812|r 188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAI 265 (346)
Q Consensus 188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~i 265 (346)
..+-+.+.++||||+|. .||.-| +.++++ +.++.+|+.+|++++|.=.-.+...-.++.+ .|+|++
T Consensus 228 ~~eR~~aLv~AGvDvlv-IDtAHG------hS~~vi----~~vk~iK~~~p~~~viaGNvaT~~~a~~Li~-aGad~i 293 (479)
T PRK07807 228 VAAKARALLEAGVDVLV-IDTAHG------HQEKML----EAIRAVRALDPGVPLVAGNVVTAEGTRDLVE-AGADIV 293 (479)
T ss_pred HHHHHHHHHHCCCCEEE-EECCCC------CHHHHH----HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH-CCCCEE
T ss_conf 89999999976998999-754576------648999----9999998408988578743202999999997-399976
No 88
>PRK13127 consensus
Probab=85.96 E-value=3.2 Score=22.43 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 32378777876421024532011
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLI 141 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLI 141 (346)
.+..+++.++.+|++ .++|++
T Consensus 71 ~~~~~~~~~~~~r~~--~~~piv 91 (262)
T PRK13127 71 KIDKYFELVKELRVD--SSVPLV 91 (262)
T ss_pred CHHHHHHHHHHHHCC--CCCCEE
T ss_conf 799999999997456--998879
No 89
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=85.95 E-value=1.2 Score=25.45 Aligned_cols=125 Identities=14% Similarity=0.247 Sum_probs=64.7
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHHHHHHHHCC-----CHHHHHHHHHHHCCCCE
Q ss_conf 53013722289999999999999977777549816784-3831100683567776127-----22689999863088623
Q gi|254780812|r 168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEHEFENYAAR-----SVGRIISAVRRKYPNAK 241 (346)
Q Consensus 168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~~f~~f~~p-----~~kkI~~~ik~~~~~vp 241 (346)
.-+|.+|+.+.++.+ +.|+|++.+ |-+.-|.- . +..+ -.-..+++++++.|++|
T Consensus 169 ~~~yTdPeeA~~Fv~--------------~TgvD~LAvaiGt~HG~Y-----K-~~~~P~~~~L~~~rL~eI~~~vp~~p 228 (347)
T PRK09196 169 DQLLTDPEEAADFVK--------------KTQVDALAIAIGTSHGAY-----K-FTRKPTGDVLAIDRIKEIHARIPNTH 228 (347)
T ss_pred HHHCCCHHHHHHHHH--------------HHCCCCCHHHHCCCCCCC-----C-CCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 431689999999999--------------748770300110134666-----5-77899722036999999998456786
Q ss_pred EECCCCCC--------------------CCCHHHHHCC--CCCCEEECCCCCCHHHH-----HHHCCCEEEECCCCHHHH
Q ss_conf 60243110--------------------0001342014--78722304677998999-----970798469688884677
Q gi|254780812|r 242 FISFAKGA--------------------GYMLKNYRRL--TDSNAIGLDWSVPLSFA-----LELQKEGPVQGNLDPMRL 294 (346)
Q Consensus 242 iI~f~~g~--------------------~~~l~~~~~~--~g~d~isiD~~~dl~~a-----~~~~~~~~lqGNldP~~L 294 (346)
+..|.... +...+++.+. .|+.=+++|. |+.+| ++....- -+.+||..+
T Consensus 229 LVLHGgS~vp~~~~~~~~~~gg~~~~~~G~~~e~i~~ai~~Gv~KiNi~T--dl~~a~~~avr~~l~~n--p~~~Dpr~~ 304 (347)
T PRK09196 229 LVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDT--DLRLASTGAIRRFLAEN--PSEFDPRKY 304 (347)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEECCH--HHHHHHHHHHHHHHHHC--CCCCCHHHH
T ss_conf 78778968867899999873676654469899999999980964663374--89999999999999868--786895999
Q ss_pred C-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 0-998899999999999732599
Q gi|254780812|r 295 V-VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 295 ~-~~~e~i~~~~~~~l~~~~~~~ 316 (346)
+ ...+.+++-++..++.++..|
T Consensus 305 ~~~~~~a~~~~v~~ki~~fGSaG 327 (347)
T PRK09196 305 LKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999859867
No 90
>PRK12857 putative aldolase; Reviewed
Probab=85.70 E-value=1.3 Score=25.13 Aligned_cols=126 Identities=13% Similarity=0.231 Sum_probs=69.6
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 30137222899999999999999777775498167843-83110068356777612722689999863088623602431
Q gi|254780812|r 169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
-+|.+|+.+.++.+ +.|+|++.+. -+.-|.-.. .-.-.-++++++++.. ++|+..|.
T Consensus 152 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGn~HG~yk~------~p~L~~~~L~~I~~~~-~vPLVLHG- 209 (284)
T PRK12857 152 AFFTDPEEARRFVE--------------ETGVDALAIAIGTAHGPYKG------VPKLDFDRLAKIRELV-NIPLVLHG- 209 (284)
T ss_pred CCCCCHHHHHHHHH--------------HHCCCEEEHHHCCCCCCCCC------CCCCCHHHHHHHHHHC-CCCEEEEC-
T ss_conf 02589999999999--------------87978770120566677689------8856999999998616-99989768-
Q ss_pred CCCCCHHHHHCC--CCCCEEECCCCCCHHHHHHHCCCEE-EECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 100001342014--7872230467799899997079846-96888846770-998899999999999732599
Q gi|254780812|r 248 GAGYMLKNYRRL--TDSNAIGLDWSVPLSFALELQKEGP-VQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 248 g~~~~l~~~~~~--~g~d~isiD~~~dl~~a~~~~~~~~-lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~ 316 (346)
|++-.-+++.+. .|+.=+.++......+.+.+..... =-+.+||..++ ...+.+++.+++.++.++..|
T Consensus 210 gSGi~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~r~~l~~~~~~~d~~~~~~~~~~a~~~~v~~~i~lfGS~g 282 (284)
T PRK12857 210 SSGVPDEAIRKAISLGVRKVNIDTNIREAFVAALRRVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSAG 282 (284)
T ss_pred CCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999809759974879999999999999986978589899999999999999999999968898
No 91
>PRK13129 consensus
Probab=85.49 E-value=3.4 Score=22.27 Aligned_cols=21 Identities=29% Similarity=0.456 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 32378777876421024532011
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLI 141 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLI 141 (346)
.+..+++.++.+|++. ++|++
T Consensus 79 ~~~~~~~~~~~~r~~~--~~Piv 99 (267)
T PRK13129 79 TLEKVLEMLESLKGKL--TIPII 99 (267)
T ss_pred CHHHHHHHHHHHHCCC--CCCEE
T ss_conf 7899999999854347--88889
No 92
>PRK13124 consensus
Probab=85.44 E-value=3.4 Score=22.26 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 32378777876421024532011
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLI 141 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLI 141 (346)
.+..+++-++.+|++. ++|++
T Consensus 69 ~~~~~~~~~~~~r~~~--~~piv 89 (257)
T PRK13124 69 NIVKAMELVGKMRKKV--TIPIV 89 (257)
T ss_pred CHHHHHHHHHHHHCCC--CCCEE
T ss_conf 6899999999852447--88889
No 93
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.88 E-value=3 Score=22.60 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=8.8
Q ss_pred HHHCCCEEEECCCCCCC
Q ss_conf 43244337316887522
Q gi|254780812|r 82 DALGRNVRFVENEGPRM 98 (346)
Q Consensus 82 ealG~~v~f~~~~GP~~ 98 (346)
+.+|+++++....|-.+
T Consensus 55 ~~~~~~~~~~~~dG~~v 71 (279)
T PRK08385 55 EHFGVAVEVKKRDGETV 71 (279)
T ss_pred HHCCCEEEEECCCCCEE
T ss_conf 97498899992889890
No 94
>PRK13136 consensus
Probab=84.78 E-value=3.6 Score=22.05 Aligned_cols=52 Identities=27% Similarity=0.337 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA 198 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a 198 (346)
.+..+++.++.+|++ .++|++ +++| -|| ++..- -+|++...++
T Consensus 72 ~~~~~~~~v~~~r~~--~~~piv--------lM~Y------------------~N~-----i~~~G----~~f~~~~~~~ 114 (253)
T PRK13136 72 TLHDVLTLITSFRQH--SEIPII--------LFTY------------------FNP-----LLAAG----DKIYQQMKSA 114 (253)
T ss_pred CHHHHHHHHHHHCCC--CCCCEE--------EECC------------------CHH-----HHHHH----HHHHHHHHHC
T ss_conf 799999999982257--898889--------9865------------------179-----99979----9999999974
Q ss_pred CCCEEEECC
Q ss_conf 981678438
Q gi|254780812|r 199 GVDVIQIFD 207 (346)
Q Consensus 199 Gad~iqIFD 207 (346)
|+|.+-|-|
T Consensus 115 GvdGlIipD 123 (253)
T PRK13136 115 GVDGCLVVD 123 (253)
T ss_pred CCCCEECCC
T ss_conf 987200678
No 95
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=83.90 E-value=4 Score=21.80 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=10.4
Q ss_pred HHHHHHCCCCCCCCCC----HHHHHCC
Q ss_conf 9999966998999976----1462312
Q gi|254780812|r 7 KILEVLQGNVINPPPI----WLMRQAG 29 (346)
Q Consensus 7 ~~l~al~g~~~~r~PV----W~MrQAG 29 (346)
.++++++.+-.+--=| =-|+++|
T Consensus 19 ~LikaLk~~~~~~efvGvgG~~m~aeG 45 (381)
T COG0763 19 GLIKALKARYPDVEFVGVGGEKMEAEG 45 (381)
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHCC
T ss_conf 999999863898389981767888655
No 96
>KOG0369 consensus
Probab=83.86 E-value=3.9 Score=21.85 Aligned_cols=144 Identities=17% Similarity=0.263 Sum_probs=78.6
Q ss_pred HHHHHHH----HHHCCCCCCCHHHHHHHHCCCHHHHHHH--HHHHH----------------------HHHHHHHHHHHH
Q ss_conf 9999999----9612467765246775301372228999--99999----------------------999999777775
Q gi|254780812|r 146 APWTVAS----YMISGGFIKDHGQNRVFAYQNSRAFNWL--LDFLS----------------------DVSAEYLIAQIH 197 (346)
Q Consensus 146 gP~Tlas----YmieG~~sk~~~~~~~~~~~~p~~~~~l--l~~lt----------------------~~~~~yl~~Qi~ 197 (346)
+|+|--+ |-+|.=|--.|...++|+++.| |.+| |.++. +++-.|+..-.+
T Consensus 588 aPyvah~f~~lfslE~WGGATFDVamRFLhEcP--WeRL~~lRkliPNIPFQmLLRGANavgYssyPDNviykFce~Ak~ 665 (1176)
T KOG0369 588 APYVAHAFAGLFSLENWGGATFDVAMRFLHECP--WERLRELRKLIPNIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKK 665 (1176)
T ss_pred CHHHHHHHHHHEEHHHCCCCHHHHHHHHHHCCH--HHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 537788764240044238831567899875193--899999997678985899751355133267871689999999985
Q ss_pred CCCCEEEECCCCH----------------H-----------HCCHHHHHHHHCCCH------------------------
Q ss_conf 4981678438311----------------0-----------068356777612722------------------------
Q gi|254780812|r 198 AGVDVIQIFDTHA----------------G-----------CLGEHEFENYAARSV------------------------ 226 (346)
Q Consensus 198 aGad~iqIFDs~a----------------g-----------~Ls~~~f~~f~~p~~------------------------ 226 (346)
.|.|+.-+|||-- | ++.|.- .+|.+.|.
T Consensus 666 nGmDiFRVFDsLN~lpnl~lGmeAagkAGGVVEAai~YtGDv~dp~r-tKY~L~YY~nlad~lV~agtHiL~IKDMAG~l 744 (1176)
T KOG0369 666 NGMDIFRVFDSLNYLPNLLLGMEAAGKAGGVVEAAICYTGDVLDPSR-TKYNLDYYLNLADKLVKAGTHILGIKDMAGVL 744 (1176)
T ss_pred CCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCC
T ss_conf 48615661013310245455566541158758998850255578654-41147999989999986267188654442336
Q ss_pred -----HHHHHHHHHHCCCCEEECCCCCCC-CCHHHHH--CCCCCCEEEC--CCCCCHHHHHHHCC-CEEEECC-CCHH
Q ss_conf -----689999863088623602431100-0013420--1478722304--67799899997079-8469688-8846
Q gi|254780812|r 227 -----GRIISAVRRKYPNAKFISFAKGAG-YMLKNYR--RLTDSNAIGL--DWSVPLSFALELQK-EGPVQGN-LDPM 292 (346)
Q Consensus 227 -----kkI~~~ik~~~~~vpiI~f~~g~~-~~l~~~~--~~~g~d~isi--D~~~dl~~a~~~~~-~~~lqGN-ldP~ 292 (346)
+-++.++++++|+.||-.+..+++ ...-.|. ...|+|++-+ |+...|..--..+- -.++||| +|..
T Consensus 745 KP~aa~lLi~alRdk~PdlPiHvHtHDtsGagVAsMlaca~AGADVVDvA~dSMSGmTSQPSmgA~vAsl~Gt~~Dt~ 822 (1176)
T KOG0369 745 KPEAAKLLIGALRDKFPDLPIHVHTHDTSGAGVASMLACALAGADVVDVAVDSMSGMTSQPSMGALVASLQGTPLDTG 822 (1176)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf 768889999988740899853774167763879999999873996044330014566568851032200258756678
No 97
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.76 E-value=1.6 Score=24.61 Aligned_cols=80 Identities=23% Similarity=0.116 Sum_probs=38.0
Q ss_pred CCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCC--HHHHH
Q ss_conf 8167843831100683567776127226899998630886236024311000013420147872230467799--89999
Q gi|254780812|r 200 VDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVP--LSFAL 277 (346)
Q Consensus 200 ad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~d--l~~a~ 277 (346)
-|.|+|+|-.-.... -+.+.++.+|+..|..+|..=+.... ......+ .|+|.+=+|+--+ ++++.
T Consensus 169 ~D~iLIKdNHi~~~g----------~i~~ai~~~r~~~~~~kIeVEv~sl~-q~~ea~~-~gaDiImLDNms~e~~~~av 236 (288)
T PRK07896 169 GDAALIKDNHVAAAG----------SVVAALRAVRAAAPDLPCEVEVDSLE-QLDEVLA-EGAELILLDNFPVWQTQEAV 236 (288)
T ss_pred CCEEEEEHHHHHHCC----------CHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHH-CCCCEEEECCCCHHHHHHHH
T ss_conf 542898621465308----------69999999998589961999979799-9999874-69999997799999999999
Q ss_pred HH----CCC--EEEECCCCH
Q ss_conf 70----798--469688884
Q gi|254780812|r 278 EL----QKE--GPVQGNLDP 291 (346)
Q Consensus 278 ~~----~~~--~~lqGNldP 291 (346)
+. .++ +-..||+++
T Consensus 237 ~~~~~~~~~v~lEaSGgI~~ 256 (288)
T PRK07896 237 QRRDARAPTVLLESSGGLTL 256 (288)
T ss_pred HHHHCCCCCEEEEEECCCCH
T ss_conf 99837698748999889999
No 98
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=83.74 E-value=1.8 Score=24.24 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=8.1
Q ss_pred HHHCCCEEEECCCCCCC
Q ss_conf 43244337316887522
Q gi|254780812|r 82 DALGRNVRFVENEGPRM 98 (346)
Q Consensus 82 ealG~~v~f~~~~GP~~ 98 (346)
+.+|+++++....|-.+
T Consensus 52 ~~~~~~v~~~~~dG~~v 68 (272)
T cd01573 52 ELLGLEVDLAAASGSRV 68 (272)
T ss_pred HHHCCEEEEECCCCCEE
T ss_conf 98498999994879890
No 99
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=83.33 E-value=3.5 Score=22.18 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=42.7
Q ss_pred CCCCEEECCCCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCCHHHHHHHH
Q ss_conf 78722304677998999970798469688884677099889999999999973259928960897633-66889999999
Q gi|254780812|r 260 TDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITP-QVDPKNVLDLV 338 (346)
Q Consensus 260 ~g~d~isiD~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p-~tp~eNv~~~v 338 (346)
.|-...++||..-... ....+..|-|.|+| +.| .+.++.....+-=+|.|=...| .-+++.|++|+
T Consensus 136 ~GGtG~~fDW~~l~~~--~~~~~~~LAGGL~p-------~NV----~~ai~~~~p~gvDvSSGVE~~pG~KD~~kv~~f~ 202 (208)
T COG0135 136 PGGTGQTFDWNLLPKL--RLSKPVMLAGGLNP-------DNV----AEAIALGPPYGVDVSSGVESSPGIKDPAKVKAFF 202 (208)
T ss_pred CCCCCCEECHHHCCCC--CCCCCEEEECCCCH-------HHH----HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 8978867797770542--45698799778898-------999----9999835983798155311689988999999999
Q ss_pred HHHHHC
Q ss_conf 999730
Q gi|254780812|r 339 KTVRSE 344 (346)
Q Consensus 339 ~~vr~~ 344 (346)
+++|.+
T Consensus 203 ~~vk~~ 208 (208)
T COG0135 203 EAVKRA 208 (208)
T ss_pred HHHHCC
T ss_conf 998529
No 100
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=83.19 E-value=2.6 Score=23.05 Aligned_cols=121 Identities=14% Similarity=0.206 Sum_probs=65.7
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 30137222899999999999999777775498167843-83110068356777612722689999863088623602431
Q gi|254780812|r 169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
-+|.+|+.+.++.+ +.|+|++.+- -+.-|.-..+- + -.-.+++++++.. ++|+..|.
T Consensus 152 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~yk~~p--~----L~~~~L~~I~~~~-~vPLVLHG- 209 (284)
T PRK09195 152 ALYTDPAQAREFVE--------------ATGIDSLAVAIGTAHGMYKSAP--K----LDFDRLENIRQWV-NIPLVLHG- 209 (284)
T ss_pred CCCCCHHHHHHHHH--------------HHCCCEEEEEECCCCCCCCCCC--C----CCHHHHHHHHHHH-CCCEEEEC-
T ss_conf 35689999999999--------------7599889865065455558988--4----5999999999974-99989878-
Q ss_pred CCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HHH---CCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 100001342014--78722304677998999---970---7984696888846770-998899999999999732599
Q gi|254780812|r 248 GAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LEL---QKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 248 g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~~---~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~ 316 (346)
|++-.-+++.+. .|+.=++++......+. ++. .++ ..||..++ ...+.+++.+++.++.++..|
T Consensus 210 gSG~~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~r~~l~~~p~-----~~dp~~~~~~~~~a~~~~v~~~i~~~GS~g 282 (284)
T PRK09195 210 ASGLPTKDIQQTIKLGICKVNVATELKIAFSQALKNYLTEHPE-----ANDPRHYLQPAKAAMKDVVSKVIADCGCEG 282 (284)
T ss_pred CCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9998999999999849769986858999999999999986879-----688699999999999999999999968898
No 101
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=83.16 E-value=4.2 Score=21.60 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=36.2
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC----CCHHHHHCCCCCCE
Q ss_conf 99977777549816784383110068356777612722689999863088623602431100----00134201478722
Q gi|254780812|r 189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG----YMLKNYRRLTDSNA 264 (346)
Q Consensus 189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~----~~l~~~~~~~g~d~ 264 (346)
++.++.--++|||++++.=+.---.+.+. ...|.++|.++. +.|+++|-+... ..+..+.+. -.++
T Consensus 85 i~la~~A~~~Gadai~v~pPyy~~~~~~~----l~~~~~~ia~a~-----~lPi~lYn~~~~~~~~~~l~~L~~~-~pni 154 (296)
T PRK03620 85 IEYAQAAERAGADGILLLPPYLTEAPQEG----LAAHVEAVCKST-----DLGVIVYNRDNAVLTADTLARLAER-CPNL 154 (296)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHHC-----CCCEEEECCCCCCCCHHHHHHHHHH-CCCE
T ss_conf 99999999829998996698678999999----999999999831-----8997751788877699999999972-8988
Q ss_pred EECCC-CCCHHHHH
Q ss_conf 30467-79989999
Q gi|254780812|r 265 IGLDW-SVPLSFAL 277 (346)
Q Consensus 265 isiD~-~~dl~~a~ 277 (346)
+++=+ .-|+....
T Consensus 155 vgiKdss~d~~~~~ 168 (296)
T PRK03620 155 IGFKDGVGDIELMV 168 (296)
T ss_pred EEEEECCCCHHHHH
T ss_conf 99995868899999
No 102
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=83.13 E-value=4.2 Score=21.59 Aligned_cols=53 Identities=19% Similarity=0.118 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf 9999999777775498167843831100683567776127226899998630886236024
Q gi|254780812|r 185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF 245 (346)
Q Consensus 185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f 245 (346)
|+.++++++.-.++|||+++++=|.-.-.+.+.-. .|.+++++. .++.|+++|
T Consensus 82 ~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~~----~~~~~i~~~----~~~~piiiY 134 (288)
T cd00954 82 LKESQELAKHAEELGYDAISAITPFYYKFSFEEIK----DYYREIIAA----AASLPMIIY 134 (288)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHH----HHHHHHHHH----CCCCCEEEE
T ss_conf 99999999999864978677379988799979999----999999985----779965432
No 103
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=83.11 E-value=1.7 Score=24.32 Aligned_cols=63 Identities=22% Similarity=0.250 Sum_probs=25.8
Q ss_pred HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC-CCHHHHHCCCCCCEEECCC
Q ss_conf 77777549816784383110068356777612722689999863088623602431100-0013420147872230467
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG-YMLKNYRRLTDSNAIGLDW 269 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~-~~l~~~~~~~g~d~isiD~ 269 (346)
+..-+++|||+||+ | ..+|++. ++.++.++...|++ .+--++|.+ ..+..|.. +|+|++|..+
T Consensus 202 ~~ea~~~gaD~IlL-D----nmsp~~l--------~~av~~~~~~~~~~-~lEaSGGI~~~ni~~yA~-tGVD~i~tsa 265 (284)
T PRK06096 202 AIAALRAQPDVLQL-D----KFSPQQA--------TEIAQIAPSLAPHC-TLALTGGINLTTLKNYLD-CGIRLFITSA 265 (284)
T ss_pred HHHHHHCCCCEEEE-C----CCCHHHH--------HHHHHHHHHHCCCE-EEEEECCCCHHHHHHHHH-CCCCEEEECC
T ss_conf 99998579999996-8----9899999--------99999987217977-999989999999999998-0999998282
No 104
>PRK13135 consensus
Probab=82.95 E-value=4.3 Score=21.54 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA 198 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a 198 (346)
.+..+++.++.+|++. ++|++ |++|. ||- +. --.-+|++.-.++
T Consensus 77 ~~~~~~~~~~~~r~~~--~~Piv--------lM~Y~------------------N~i-----~~---yG~e~F~~~~~~~ 120 (267)
T PRK13135 77 TLPRILAMVRSVRRRC--QVPIV--------LMGYY------------------NPI-----FA---YGLERFAADAAAA 120 (267)
T ss_pred CHHHHHHHHHHHHCCC--CCCEE--------EEECC------------------HHH-----HH---HHHHHHHHHHHHC
T ss_conf 4999999999863358--99889--------98423------------------099-----88---4689999999974
Q ss_pred CCCEEEECCCCHHHCCHHHHHH
Q ss_conf 9816784383110068356777
Q gi|254780812|r 199 GVDVIQIFDTHAGCLGEHEFEN 220 (346)
Q Consensus 199 Gad~iqIFDs~ag~Ls~~~f~~ 220 (346)
|+|.+-|-| |++++-++
T Consensus 121 GvdGlIipD-----LP~ee~~~ 137 (267)
T PRK13135 121 GVDGVLLVD-----LPPEEAEE 137 (267)
T ss_pred CCCEEECCC-----CCHHHHHH
T ss_conf 997476378-----99788899
No 105
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=82.29 E-value=4 Score=21.76 Aligned_cols=145 Identities=17% Similarity=0.099 Sum_probs=65.0
Q ss_pred HHCCCCEEEECCCCEECC---------HHHCCCEEEECCCCCCCCCCCCHHHH---HCCCCC----HHHHHHHHHHHHHH
Q ss_conf 762987265213320010---------43244337316887522233333554---205670----12344323787778
Q gi|254780812|r 64 RRYNFDAAILFSDILVIA---------DALGRNVRFVENEGPRMDPITTQEIY---LLNPNI----DLFLNYLLPIFQSI 127 (346)
Q Consensus 64 ~r~~~DaaIlFsDIl~~~---------ealG~~v~f~~~~GP~~~p~~~~~~~---~~~~~~----~~~~~~l~~v~eAi 127 (346)
+.+|-||..|-..+|... ..+|+++=. |--..++.. ....+. ......+..-++..
T Consensus 130 ~~~GAdaiLLI~~~L~~~~l~~l~~~a~~lgl~~Lv--------Evh~~~el~~a~~~~~~iiGiNnRnL~tf~vdl~~t 201 (459)
T PRK09427 130 RYYQADAILLMLSVLDDEQYRQLAAVAHSLNMGVLT--------EVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRT 201 (459)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEE--------EECCHHHHHHHHHCCCCEEEEECCCCCCEEECHHHH
T ss_conf 980998999870228999999999999982990799--------968999999998489998998789886214877999
Q ss_pred HHHHHCCCCCCHHHHHHH--HHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHH-HHHHH---HHH-HHHHHHHHHHHHCC
Q ss_conf 764210245320111147--999999996124677652467753013-72228-99999---999-99999977777549
Q gi|254780812|r 128 SILRKKLPNHITLIGFCG--APWTVASYMISGGFIKDHGQNRVFAYQ-NSRAF-NWLLD---FLS-DVSAEYLIAQIHAG 199 (346)
Q Consensus 128 ~~~k~~l~~~~pLIGF~G--gP~TlasYmieG~~sk~~~~~~~~~~~-~p~~~-~~ll~---~lt-~~~~~yl~~Qi~aG 199 (346)
..+...+++++.+|.=.| +|-.+..+ -++ ...|+..-.+|.. ||+.+ .+|+- ++. =...+-+.+-+++|
T Consensus 202 ~~l~~~ip~~~~~vsESGI~~~~dv~~l-~~~--~~~~LvGe~lmr~~d~~~~~r~l~~g~~KICGIT~~eDA~~a~~~G 278 (459)
T PRK09427 202 RELAPLIPADVTVISESGIYTHAQVREL-SPF--VNGFLIGSSLMAEDDLDLAVRKLILGENKVCGLTRPQDAKAAYDAG 278 (459)
T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHH-HHH--CCEEEECHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 9999768999749973799999999999-843--9999978587579998999999737898467899899999999849
Q ss_pred CCEEE-ECCC-CHHHCCHHHHH
Q ss_conf 81678-4383-11006835677
Q gi|254780812|r 200 VDVIQ-IFDT-HAGCLGEHEFE 219 (346)
Q Consensus 200 ad~iq-IFDs-~ag~Ls~~~f~ 219 (346)
||++- ||-+ +--.++++.-.
T Consensus 279 AD~iGfIF~~~SpR~Vs~e~Ak 300 (459)
T PRK09427 279 AVYGGLIFVEKSPRYVSLEQAQ 300 (459)
T ss_pred CCEEEEEEECCCCCCCCHHHHH
T ss_conf 9989899726988879999999
No 106
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=82.14 E-value=3.7 Score=22.03 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=13.1
Q ss_pred ECCCCCCC-CCHHHHHCCCCCCEEECCCC
Q ss_conf 02431100-00134201478722304677
Q gi|254780812|r 243 ISFAKGAG-YMLKNYRRLTDSNAIGLDWS 270 (346)
Q Consensus 243 I~f~~g~~-~~l~~~~~~~g~d~isiD~~ 270 (346)
+--++|.+ ..+..|.. +|.|.||+.|-
T Consensus 237 lEaSGgIt~~ni~~yA~-tGVD~IS~gal 264 (280)
T COG0157 237 LEASGGITLENIREYAE-TGVDVISVGAL 264 (280)
T ss_pred EEEECCCCHHHHHHHHH-CCCCEEEECCC
T ss_conf 99758978778999862-69979980733
No 107
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=81.84 E-value=3.4 Score=22.26 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCC-CCEEECCCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf 689999863088-6236024311000013420147872230467
Q gi|254780812|r 227 GRIISAVRRKYP-NAKFISFAKGAGYMLKNYRRLTDSNAIGLDW 269 (346)
Q Consensus 227 kkI~~~ik~~~~-~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~ 269 (346)
.+.++.+|++.| ..++..=+..... .....+ .|+|++=+|+
T Consensus 169 ~~av~~~r~~~~~~~~IeVEv~s~~e-~~~a~~-~gadiI~LDn 210 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEVETLEQ-LKEALE-AGADIIMLDN 210 (268)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCHHH-HHHHHH-CCCCEEEECC
T ss_conf 99999999867998529999488999-999997-5999999779
No 108
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process.
Probab=81.44 E-value=2 Score=23.92 Aligned_cols=107 Identities=20% Similarity=0.267 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC--CHHHH-HH--H-HCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 237877787642102453201111479999999961246776--52467-75--3-013722289999999999999977
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIK--DHGQN-RV--F-AYQNSRAFNWLLDFLSDVSAEYLI 193 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk--~~~~~-~~--~-~~~~p~~~~~ll~~lt~~~~~yl~ 193 (346)
-.+-.+=|+.+|++++|. ==||.||=| ||-+.. +-+.. .. . -.++| +.-..||+
T Consensus 121 F~YA~DLV~yIr~~YGD~-F~IgVAGYP--------EgHpe~i~~Gla~~~~kd~GheqdP-----------~~DL~yLK 180 (312)
T TIGR00677 121 FKYAVDLVKYIRSKYGDY-FCIGVAGYP--------EGHPEAIEDGLASNEAKDVGHEQDP-----------EKDLKYLK 180 (312)
T ss_pred HHHHHHHHHHHHHHCCCC-CCEEECCCC--------CCCCHHHHHHCCCCCCCCCCCCCCH-----------HHHHHHHH
T ss_conf 576678899877523880-211202787--------7783466520257753246754573-----------67899998
Q ss_pred HHHHCCCCEE--EECCCCHHHCCHHHHHHHHCCCHHHHHHHHHH-HCCCCEEE--CCCCCCCCCHHHHHCCC
Q ss_conf 7775498167--84383110068356777612722689999863-08862360--24311000013420147
Q gi|254780812|r 194 AQIHAGVDVI--QIFDTHAGCLGEHEFENYAARSVGRIISAVRR-KYPNAKFI--SFAKGAGYMLKNYRRLT 260 (346)
Q Consensus 194 ~Qi~aGad~i--qIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~-~~~~vpiI--~f~~g~~~~l~~~~~~~ 260 (346)
..|++|||-| |+| -..+.|-+|+ +.+++ .+-++||+ .+|=.+...+..+.+.+
T Consensus 181 ~KV~aGADfIiTQlF------YDvD~Fl~fv--------~~~R~r~Gi~~PI~PGIMPI~~Y~~F~R~~k~s 238 (312)
T TIGR00677 181 EKVDAGADFIITQLF------YDVDNFLKFV--------NDVRARIGIDCPIVPGIMPINNYKSFLRRAKLS 238 (312)
T ss_pred HHHCCCCCEEEECCH------HHHHHHHHHH--------HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 863058974752117------7799999999--------998986587767578867303579999987615
No 109
>pfam02581 TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyses the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI.
Probab=81.35 E-value=4.9 Score=21.15 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=48.1
Q ss_pred HHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf 99777775498167843831100683567776127226899998630886236024311000013420147872230467
Q gi|254780812|r 190 EYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDW 269 (346)
Q Consensus 190 ~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~ 269 (346)
+.++.-+++|+++||+-+.. ++.+.|.+.+ +++.+-+++. ++++|.. + . .++....++|.+++..
T Consensus 16 ~~~~~~l~~Gv~~vqlR~K~---~~~~~~~~~a----~~l~~i~~~~--~~~liin--~---~-~~lA~~~~~dGvHL~~ 80 (180)
T pfam02581 16 EVVEEALKGGVTIVQLREKD---LDDRELLELA----ERLRALCRKY--GVPLIIN--D---R-VDLALAVGADGVHLGQ 80 (180)
T ss_pred HHHHHHHHCCCCEEEECCCC---CCHHHHHHHH----HHHHHHHHHH--CCEEEEC--C---H-HHHHHHHCCCEEECCC
T ss_conf 99999998699999987898---7999999999----9999999982--9979987--8---5-9999972979894486
Q ss_pred C-CCHHHHHHHCCCEEEEC
Q ss_conf 7-99899997079846968
Q gi|254780812|r 270 S-VPLSFALELQKEGPVQG 287 (346)
Q Consensus 270 ~-~dl~~a~~~~~~~~lqG 287 (346)
. .+..++|+..++..+.|
T Consensus 81 ~d~~~~~~r~~~~~~~iiG 99 (180)
T pfam02581 81 DDLPVAEARELLGPDKIIG 99 (180)
T ss_pred CCCCHHHHHHHCCCCCEEE
T ss_conf 7667999998649776897
No 110
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=81.10 E-value=4.1 Score=21.72 Aligned_cols=125 Identities=18% Similarity=0.316 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-----
Q ss_conf 23787778764210245320111147999999---9961246776524677530137222899999999999999-----
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVA---SYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY----- 191 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~Tla---sYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y----- 191 (346)
.+..+++|+.+++++++ -+|| +|.=.|.. ...--| -+|.- -|-.-.++++.+-+.-+-|
T Consensus 39 t~~a~~~i~~l~~~~~~--~~iG-aGTV~~~~~~~~a~~aG---a~Fiv-------sP~~~~~v~~~a~~~~~~~iPGv~ 105 (190)
T cd00452 39 TPGALEAIRALRKEFPE--ALIG-AGTVLTPEQADAAIAAG---AQFIV-------SPGLDPEVVKAANRAGIPLLPGVA 105 (190)
T ss_pred CCHHHHHHHHHHHHCCC--CEEE-ECCCCCHHHHHHHHHCC---CCEEE-------CCCCCHHHHHHHHHCCCCEECCCC
T ss_conf 80299999999986898--0896-52347799999999859---98997-------377999999999982996657879
Q ss_pred ----HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC-CCCCHHHHHCCCCCCEEE
Q ss_conf ----777775498167843831100683567776127226899998630886236024311-000013420147872230
Q gi|254780812|r 192 ----LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG-AGYMLKNYRRLTDSNAIG 266 (346)
Q Consensus 192 ----l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g-~~~~l~~~~~~~g~d~is 266 (346)
+..-.++|++.+.+|-. +.+.+.+.+ .++.-+|+++++- ++| +-..+.+|.+ .|+.+++
T Consensus 106 TpsEi~~A~~~G~~~vK~FPa--~~~G~~~lk------------al~~pfp~~~~~p-tGGI~~~N~~~yl~-~gv~avG 169 (190)
T cd00452 106 TPTEIMQALELGADIVKLFPA--EAVGPAYIK------------ALKGPFPQVRFMP-TGGVSLDNAAEWLA-AGVVAVG 169 (190)
T ss_pred CHHHHHHHHHCCCCEEEECCC--CCCCHHHHH------------HHHCCCCCCCEEE-ECCCCHHHHHHHHH-CCCEEEE
T ss_conf 999999999879998998955--114999999------------9855489993899-67999888999996-8998999
Q ss_pred CCCCCCH
Q ss_conf 4677998
Q gi|254780812|r 267 LDWSVPL 273 (346)
Q Consensus 267 iD~~~dl 273 (346)
++|...-
T Consensus 170 ~g~~l~~ 176 (190)
T cd00452 170 GGSLLPK 176 (190)
T ss_pred ECHHCCH
T ss_conf 5412588
No 111
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=80.59 E-value=5.2 Score=20.97 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=42.9
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf 99977777549816784383110068356777612722689999863088623602431100001342014787223046
Q gi|254780812|r 189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLD 268 (346)
Q Consensus 189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD 268 (346)
.++++.-+++|+..||+-+-. ++.+.+.+.+. ++.+-.++ + ++|+|.. . -.+++...++|.+++.
T Consensus 22 ~~~ve~al~gGv~~vQlR~K~---~~~~e~~~~a~----~~~~l~~~-~-~v~lIIN-----D-~vdlA~~~~AdGVHLG 86 (211)
T PRK03512 22 VQWIERLLDAGVRTLQLRIKD---RRDEEVEADVV----AAIALGRR-Y-NARLFIN-----D-YWRLAIKHQAYGVHLG 86 (211)
T ss_pred HHHHHHHHHCCCCEEEEECCC---CCHHHHHHHHH----HHHHHHHH-H-CCEEEEE-----C-CHHHHHHCCCCEEECC
T ss_conf 999999998799999981799---99999999999----99999998-0-9859997-----8-6899997199889659
Q ss_pred CCC-CHHHHHHHCC
Q ss_conf 779-9899997079
Q gi|254780812|r 269 WSV-PLSFALELQK 281 (346)
Q Consensus 269 ~~~-dl~~a~~~~~ 281 (346)
..- +...+|++.+
T Consensus 87 q~Dl~~~~aR~~lg 100 (211)
T PRK03512 87 QEDLETTDLNAIRA 100 (211)
T ss_pred CCCCCHHHHHHHCC
T ss_conf 65368899998669
No 112
>PRK08185 hypothetical protein; Provisional
Probab=80.53 E-value=2.2 Score=23.53 Aligned_cols=126 Identities=11% Similarity=0.159 Sum_probs=66.1
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 3013722289999999999999977777549816784-383110068356777612722689999863088623602431
Q gi|254780812|r 169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
.+|.+|+.+.++.+ +.|+|++.+ |-+.-|.-.+..=-+. .-++++.+++.. ++|+..|.
T Consensus 146 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGn~HG~Yk~~~~p~l----~~~~l~~I~~~~-~vPLVLHG- 205 (283)
T PRK08185 146 IIYTDPEQAEDFVS--------------RTGVDTLAVAIGTAHGIYPKDKKPKL----QMDILKEINERV-DIPLVLHG- 205 (283)
T ss_pred CCCCCHHHHHHHHH--------------HHCCCEEEEECCCCCCCCCCCCCCCC----CHHHHHHHHHHC-CCCEEEEC-
T ss_conf 00489999999999--------------87999786332554555578898423----789999999864-99989758-
Q ss_pred CCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HHHCCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 100001342014--78722304677998999---9707984696888846770-998899999999999732599
Q gi|254780812|r 248 GAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LELQKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 248 g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~~~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~ 316 (346)
|++..-+++.+. .|+.=+.++..+...+. ++...+- -...||..++ ...+.+++.+++.++.++..|
T Consensus 206 gSG~~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~~~~l~~~--p~~~d~~~~~~~~~~a~~~~v~~ki~~fGS~g 278 (283)
T PRK08185 206 GSANPDAEIAESVTLGVGKINISSDMKYAFFQKVREILVAN--PSWWEPNVIYPDAINAAKEVVRHKMKLFNSTG 278 (283)
T ss_pred CCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999998693799848679999999999999859--77578799989999999999999999969987
No 113
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=80.18 E-value=5.4 Score=20.88 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=12.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 7787642102453201111479
Q gi|254780812|r 125 QSISILRKKLPNHITLIGFCGA 146 (346)
Q Consensus 125 eAi~~~k~~l~~~~pLIGF~Gg 146 (346)
+.++..++..++++|+|--+|+
T Consensus 61 ~v~~~~v~~~~grvpviaG~g~ 82 (299)
T COG0329 61 EVLEAVVEAVGGRVPVIAGVGS 82 (299)
T ss_pred HHHHHHHHHHCCCCCEEEECCC
T ss_conf 9999999996897778986287
No 114
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=80.08 E-value=2.2 Score=23.58 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHCC-CCEEECCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf 2689999863088-62360243110000134201478722304677
Q gi|254780812|r 226 VGRIISAVRRKYP-NAKFISFAKGAGYMLKNYRRLTDSNAIGLDWS 270 (346)
Q Consensus 226 ~kkI~~~ik~~~~-~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~ 270 (346)
+.+.++.+|+..| ..++..=+..... .....+ .|+|.+=+|+-
T Consensus 167 ~~~av~~~r~~~~~~~kIeVEv~tl~e-a~~a~~-~g~D~I~LDn~ 210 (269)
T cd01568 167 ITEAVKRARAAAPFEKKIEVEVETLEE-AEEALE-AGADIIMLDNM 210 (269)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCHHH-HHHHHH-CCCCEEEECCC
T ss_conf 999999999868998439999498999-999997-69999998798
No 115
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=79.94 E-value=2 Score=23.83 Aligned_cols=125 Identities=16% Similarity=0.268 Sum_probs=66.6
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 30137222899999999999999777775498167843-83110068356777612722689999863088623602431
Q gi|254780812|r 169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
-.|.+|+.+.++.+ +.|+|++.+. -+.-|.-.+.. -+.-. ++++++++.. ++|+..|.
T Consensus 145 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGn~HG~yk~~~-p~L~~----~~L~~I~~~~-~vPLVlHG- 203 (276)
T cd00947 145 GLLTDPEEAEEFVE--------------ETGVDALAVAIGTSHGAYKGGE-PKLDF----DRLKEIAERV-NVPLVLHG- 203 (276)
T ss_pred CCCCCHHHHHHHHH--------------HHCCCEEEEECCCCCCCCCCCC-CCCCH----HHHHHHHHHC-CCCEEEEC-
T ss_conf 33489999999999--------------8598878764164344568999-86488----9999999973-99879757-
Q ss_pred CCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HHHCCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 100001342014--78722304677998999---9707984696888846770-998899999999999732599
Q gi|254780812|r 248 GAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LELQKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 248 g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~~~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~ 316 (346)
|++..-+++.+. .|+.=++++......+. ++....- -...||..++ ...+.+++.+++.++.++..|
T Consensus 204 gSG~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~r~~~~~~--~~~~d~~~~~~~~~~a~~~~v~~~i~lfGS~G 276 (276)
T cd00947 204 GSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAEN--PKEFDPRKYLAPAIEAVKEVVKHKMELFGSAG 276 (276)
T ss_pred CCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999998497599867389999999999999868--88679799999999999999999999858999
No 116
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=79.79 E-value=5.5 Score=20.80 Aligned_cols=144 Identities=14% Similarity=0.065 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEC-CC---CHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCC-CHHHHHCC
Q ss_conf 9999999777775498167843-83---1100683567776127226899998630886236024311000-01342014
Q gi|254780812|r 185 SDVSAEYLIAQIHAGVDVIQIF-DT---HAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGY-MLKNYRRL 259 (346)
Q Consensus 185 t~~~~~yl~~Qi~aGad~iqIF-Ds---~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~-~l~~~~~~ 259 (346)
.+...+++..+++.|||+|-|- +| .+..+|++.=.+-..|.++.|.+. + ++++.. ++.. ..-..+-.
T Consensus 23 ~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~~Rl~pvi~~l~~~----~-~~~iSI---DT~~~~Va~~al~ 94 (257)
T cd00739 23 LDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGE----L-DVLISV---DTFRAEVARAALE 94 (257)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----C-CCCEEE---ECCCHHHHHHHHH
T ss_conf 9999999999998799899979875899998699888898899999999860----7-982899---7997599999998
Q ss_pred CCCCEEE-CCCC-CC--H-HHHHHHCCCEEEECCC-CHHHHC-----CC-HHHHHHHHHHHHHHHCC-----CCCEEEEC
Q ss_conf 7872230-4677-99--8-9999707984696888-846770-----99-88999999999997325-----99289608
Q gi|254780812|r 260 TDSNAIG-LDWS-VP--L-SFALELQKEGPVQGNL-DPMRLV-----VG-NQVMIDGVNAILDVLGS-----GPFIFNLG 322 (346)
Q Consensus 260 ~g~d~is-iD~~-~d--l-~~a~~~~~~~~lqGNl-dP~~L~-----~~-~e~i~~~~~~~l~~~~~-----~~~I~nLG 322 (346)
.|++.|. +..- .| + +.+++..-.+++|=+- .|..+. .+ -+++.....+-++.... ..-|+-.|
T Consensus 95 ~Ga~iINDisg~~~d~~m~~~va~~~~~~ilmH~~g~p~~m~~~~~~~dv~~~i~~~f~~~i~~l~~~Gi~~~~IiiDPG 174 (257)
T cd00739 95 AGADIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPG 174 (257)
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 49989975342447778999999849999997689984222337863309999999999999999987998251997088
Q ss_pred CCCCCCCCHHHHHHH
Q ss_conf 976336688999999
Q gi|254780812|r 323 HGITPQVDPKNVLDL 337 (346)
Q Consensus 323 hGi~p~tp~eNv~~~ 337 (346)
.|. ..|+.+|++.+
T Consensus 175 ~GF-gKt~~~n~~ll 188 (257)
T cd00739 175 IGF-GKTPEHNLELL 188 (257)
T ss_pred CCC-CCCHHHHHHHH
T ss_conf 787-88879999999
No 117
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=79.34 E-value=3.2 Score=22.48 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf 999777775498167843831100683567776127226899998630886236024311000
Q gi|254780812|r 189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGY 251 (346)
Q Consensus 189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~ 251 (346)
.+-+++-+++|-|+|+|-=|..--++ -+..+++.+++++ ++|+|.|+.|.+.
T Consensus 17 ~eI~~a~~~~GTDail~GGs~gVt~~----------~~~~~~~~~~e~~-~~P~ilfPsn~~~ 68 (242)
T TIGR01768 17 DEIAKAAAESGTDAILVGGSQGVTLD----------KLDQLIEALRERY-GVPIILFPSNLTN 68 (242)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCHH----------HHHHHHHHHHHCC-CCCEEEECCCCCC
T ss_conf 89999998358988982277870368----------8999999997405-9837984188742
No 118
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=78.99 E-value=5.8 Score=20.63 Aligned_cols=113 Identities=18% Similarity=0.168 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 23787778764210245320111147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG 199 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG 199 (346)
+.+.++.++.+|++++ +.|+|+...+. ..++.+..+.+.+. ++|
T Consensus 83 ~~~~~~~~~~~~~~~~-~~~~i~si~~~------------------------~~~~~~~~~a~~~~-----------~~g 126 (299)
T cd02940 83 LEYWLKEIRELKKDFP-DKILIASIMCE------------------------YNKEDWTELAKLVE-----------EAG 126 (299)
T ss_pred HHHHHHHHHHHHHCCC-CCCEEEEEECC------------------------CCHHHHHHHHHHHH-----------HCC
T ss_conf 9999999999875279-97379885178------------------------98789999999998-----------718
Q ss_pred CCEEEECCCCHHHCCHHHHH-H--HHCCCHHHHHHHHHHHCCCCEEECCCCCCC--CCHHHH---HCCCCCCEEECCCCC
Q ss_conf 81678438311006835677-7--612722689999863088623602431100--001342---014787223046779
Q gi|254780812|r 200 VDVIQIFDTHAGCLGEHEFE-N--YAARSVGRIISAVRRKYPNAKFISFAKGAG--YMLKNY---RRLTDSNAIGLDWSV 271 (346)
Q Consensus 200 ad~iqIFDs~ag~Ls~~~f~-~--f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~--~~l~~~---~~~~g~d~isiD~~~ 271 (346)
||++-|==|.-...+...+- . .-...++++++++++.. ++|++. |=+- ..+..+ ....|+|++.+-++.
T Consensus 127 ad~lElNiScPN~~~~~~~g~~~~~~~~~l~~i~~~v~~~~-~~Pi~v--KLsP~~~~i~~ia~~~~~~gadgiv~~Nt~ 203 (299)
T cd02940 127 ADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIA--KLTPNITDIREIARAAKEGGADGVSAINTV 203 (299)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCEEE--ECCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 88899826788987612345552449999999999998624-786489--628871549999999998599899997666
No 119
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=78.84 E-value=5.2 Score=20.99 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=72.6
Q ss_pred HHCCHHHHH-HHHHHHHHHCCCCEEEECCCCEECCHH--HC--CCEEEECCCCCCCCCCCCHH--HHHCCCCCHHHHHHH
Q ss_conf 842799999-987212876298726521332001043--24--43373168875222333335--542056701234432
Q gi|254780812|r 48 MCYTPEYTV-ELTLQPIRRYNFDAAILFSDILVIADA--LG--RNVRFVENEGPRMDPITTQE--IYLLNPNIDLFLNYL 120 (346)
Q Consensus 48 ~~~~pela~-evtl~p~~r~~~DaaIlFsDIl~~~ea--lG--~~v~f~~~~GP~~~p~~~~~--~~~~~~~~~~~~~~l 120 (346)
++++-++-. +=.+..+...|+||. +.+|.-++--+ .| .++.. ++..+-.+... .....-..-....+-
T Consensus 72 ~~~~~~~~~~~~~l~~l~e~GvDav-iv~Dpg~i~l~~e~~p~l~ih~----S~q~~v~N~~~~~f~~~~G~~rvVl~rE 146 (347)
T COG0826 72 LLHNDELETLERYLDRLVELGVDAV-IVADPGLIMLARERGPDLPIHV----STQANVTNAETAKFWKELGAKRVVLPRE 146 (347)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEE-EECCHHHHHHHHHHCCCCCEEE----EEEEECCCHHHHHHHHHCCCEEEEECCC
T ss_conf 4164105689999999997598789-9718899999997589986899----6567217899999999769879981764
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH--------HHHHHHHHHHCCCCCCCHH---HHHHHHC---C--CHHHH-----HH
Q ss_conf 3787778764210245320111147--------9999999961246776524---6775301---3--72228-----99
Q gi|254780812|r 121 LPIFQSISILRKKLPNHITLIGFCG--------APWTVASYMISGGFIKDHG---QNRVFAY---Q--NSRAF-----NW 179 (346)
Q Consensus 121 ~~v~eAi~~~k~~l~~~~pLIGF~G--------gP~TlasYmieG~~sk~~~---~~~~~~~---~--~p~~~-----~~ 179 (346)
-. .+-|+.++++++ ++++=-|+= |==.+++|+- |. +.|-. ....+-+ . ++... ..
T Consensus 147 ls-~~ei~~i~~~~~-~veiEvfVhGalcia~SgRC~ls~~~~-~~-~~n~g~c~~~~r~~~~~~~~~~~~~~~~~~g~~ 222 (347)
T COG0826 147 LS-LEEIKEIKEQTP-DVEIEVFVHGALCIAYSGRCLLSNYFT-GR-SANRGGCCQPCRWGYYLVETLCKGEVLSLNGTY 222 (347)
T ss_pred CC-HHHHHHHHHHCC-CCEEEEEEECCHHHCCCCHHHHHHHCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEE
T ss_conf 89-999999997288-863899993453541373335666422-78-878887677666441002566776067436407
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH-HCCHHHHHHHHCCCHHHHH
Q ss_conf 99999999999977777549816784383110-0683567776127226899
Q gi|254780812|r 180 LLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG-CLGEHEFENYAARSVGRII 230 (346)
Q Consensus 180 ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag-~Ls~~~f~~f~~p~~kkI~ 230 (346)
+|.----..++++...+++|+|.+-| .| .-++++..+-+.-|.+.+-
T Consensus 223 ~~s~~dl~~~~~l~~L~~~GV~s~KI----eGR~k~~~yv~~v~~~yr~aid 270 (347)
T COG0826 223 LMSPKDLNLLEELPELIEAGVDSLKI----EGRMKSIEYVARVVKAYRQAID 270 (347)
T ss_pred EECCHHHHHHHHHHHHHHCCCCEEEE----CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 64520144577699999759848998----6876898999999999999998
No 120
>PRK13137 consensus
Probab=78.59 E-value=6 Score=20.55 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 23787778764210245320111147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG 199 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG 199 (346)
+..+++.++.+|++. ++|++- ++|. || ++. --.-+|++.--++|
T Consensus 85 l~~~l~~~~~~r~~~--~~Pivl--------M~Y~------------------N~-----i~~---yG~e~F~~~a~~aG 128 (266)
T PRK13137 85 TRRTLELVRELRALT--DTPLVI--------MTYL------------------NP-----IYA---VGPEEFMRLFQEAG 128 (266)
T ss_pred HHHHHHHHHHHCCCC--CCCEEE--------EECH------------------HH-----HHH---HCHHHHHHHHHHCC
T ss_conf 778999999755568--987899--------9345------------------89-----987---58999999999769
Q ss_pred CCEEEECCCCHHHCCHHHHHHH
Q ss_conf 8167843831100683567776
Q gi|254780812|r 200 VDVIQIFDTHAGCLGEHEFENY 221 (346)
Q Consensus 200 ad~iqIFDs~ag~Ls~~~f~~f 221 (346)
+|.+-|-| |++++..+|
T Consensus 129 vdGlIipD-----LP~eE~~~~ 145 (266)
T PRK13137 129 VDGLILPD-----LPPDQDPEI 145 (266)
T ss_pred CCEEEECC-----CCHHHHHHH
T ss_conf 60999479-----997888999
No 121
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=78.55 E-value=6 Score=20.54 Aligned_cols=127 Identities=17% Similarity=0.276 Sum_probs=63.1
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCC--HHHHHHHHCCCHHHHHHHHHHHCCCCEEECCC
Q ss_conf 0137222899999999999999777775498167843-83110068--35677761272268999986308862360243
Q gi|254780812|r 170 AYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLG--EHEFENYAARSVGRIISAVRRKYPNAKFISFA 246 (346)
Q Consensus 170 ~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls--~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~ 246 (346)
+|.+|+.+.++.+ +.|+|++.+. -+.-|.-. +.. ..-...-+++++++++.+++|+..+.
T Consensus 162 ~yT~Peea~~Fv~--------------~TgvD~LAvaiGt~HG~Yk~~~~~---~~p~L~~d~L~~I~~~v~~vPLVLHG 224 (321)
T PRK07084 162 TYTQPEEVEDFVT--------------KTGVDSLAISIGTSHGAFKFKPGE---CPPPLRFDILAEIEKRIPGFPIVLHG 224 (321)
T ss_pred HCCCHHHHHHHHH--------------HHCCCEEEEECCHHCCCCCCCCCC---CCCCCCHHHHHHHHHHCCCCCEEEEC
T ss_conf 0599999999999--------------869985864201003676678888---87443699999999857799868528
Q ss_pred CCC--------------------CCCHHHHHC--CCCCCEEECCCCCCHHHH---HHHCCCEEEECCCCHHHHCC-CHHH
Q ss_conf 110--------------------000134201--478722304677998999---97079846968888467709-9889
Q gi|254780812|r 247 KGA--------------------GYMLKNYRR--LTDSNAIGLDWSVPLSFA---LELQKEGPVQGNLDPMRLVV-GNQV 300 (346)
Q Consensus 247 ~g~--------------------~~~l~~~~~--~~g~d~isiD~~~dl~~a---~~~~~~~~lqGNldP~~L~~-~~e~ 300 (346)
+.. +.--+++.+ ..|+.=+.+|......+. |+...+. -...||..++. ..+.
T Consensus 225 gS~~p~~~v~~~~~~Gg~~~~~~G~~de~i~~Ai~~GI~KvNi~Tdl~~a~~~~ir~~l~~~--p~~~Dpr~~l~~a~~a 302 (321)
T PRK07084 225 ASSVPQELVETINQHGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGRLAMTAAIRKVLDEK--PEEFDPRKYLGPARDA 302 (321)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH
T ss_conf 99882788777875288555678999999999998697699818078999999999999869--7768969999999999
Q ss_pred HHHHHH-HHHHHHCCC
Q ss_conf 999999-999973259
Q gi|254780812|r 301 MIDGVN-AILDVLGSG 315 (346)
Q Consensus 301 i~~~~~-~~l~~~~~~ 315 (346)
+++-++ ++++.++..
T Consensus 303 ~~~~v~~k~i~l~GS~ 318 (321)
T PRK07084 303 LKKLYKHKNINVLGSN 318 (321)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999984899
No 122
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=78.13 E-value=3.3 Score=22.38 Aligned_cols=124 Identities=9% Similarity=0.131 Sum_probs=66.5
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 0137222899999999999999777775498167843-831100683567776127226899998630886236024311
Q gi|254780812|r 170 AYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG 248 (346)
Q Consensus 170 ~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g 248 (346)
.+.+|+.+.++.+. .|+|++.+. -+.-|. ..+ -+. .-+.++.+++.. ++|+..|. |
T Consensus 151 ~~T~Peea~~Fv~~--------------TgvD~LAvaiGt~HG~-~~~--p~l----~~~~l~~I~~~~-~iPLVLHG-g 207 (283)
T PRK07998 151 CKTEPEKVKTFVER--------------TGCDMLAVSIGNVHGL-DDI--PRI----DIPLLKRIAEVS-PVPLVIHG-G 207 (283)
T ss_pred CCCCHHHHHHHHHH--------------HCCCEEEEECCCCCCC-CCC--CCC----CHHHHHHHHHHC-CCCEEEEC-C
T ss_conf 38999999999998--------------6889996404664567-878--863----899999988647-98789869-9
Q ss_pred CCCCHHHHHC--CCCCCEEECCCCCCHHHHHHHCCCEEE-ECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 0000134201--478722304677998999970798469-6888846770-998899999999999732599
Q gi|254780812|r 249 AGYMLKNYRR--LTDSNAIGLDWSVPLSFALELQKEGPV-QGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 249 ~~~~l~~~~~--~~g~d~isiD~~~dl~~a~~~~~~~~l-qGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~ 316 (346)
++-.-+++.+ ..|+.=+.++......+...+.....- -...||.-++ ...+.+++.+++-++.+++.+
T Consensus 208 SGi~~e~i~~ai~~Gi~KiNi~Tel~~a~~~~~r~~l~~np~~~d~~~~~~~~~~a~~e~v~~ki~lfgS~~ 279 (283)
T PRK07998 208 SGIPPDILRSFVNYRVAKVNIASDLRKAFITTVGKAYVNNHNEANLARVMASAKQAVEEDVYSKIKMMNENH 279 (283)
T ss_pred CCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999869869995868999999999999986877689799979999999999999999878797
No 123
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=77.97 E-value=3.7 Score=22.01 Aligned_cols=105 Identities=19% Similarity=0.304 Sum_probs=58.4
Q ss_pred HHHHHHHHHCCCCEE--EECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC--CCCCCCCCHHHHHC-CCCCC
Q ss_conf 999777775498167--84383110068356777612722689999863088623602--43110000134201-47872
Q gi|254780812|r 189 AEYLIAQIHAGVDVI--QIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFIS--FAKGAGYMLKNYRR-LTDSN 263 (346)
Q Consensus 189 ~~yl~~Qi~aGad~i--qIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~--f~~g~~~~l~~~~~-~~g~d 263 (346)
+.|++.-|+||||-+ |+| -..+.|.+|. +.++..+-++|||= .|=-+-..+..+++ .+|++
T Consensus 176 ~~nLK~KVdAGAd~aITQlF------Fdnd~y~rF~--------d~c~~aGI~~PI~PGIMPi~n~~q~~Rf~~~~~g~~ 241 (302)
T TIGR00676 176 IENLKRKVDAGADYAITQLF------FDNDDYYRFV--------DRCRAAGIDVPIIPGIMPITNFKQLLRFAESLCGAE 241 (302)
T ss_pred HHHHHHHHHHCCCCEEEEEE------CCHHHHHHHH--------HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999988627780331111------1566788899--------999987895000167236367678999966414884
Q ss_pred EEECCCCCCHHHHHHH--CCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC--CEEEE
Q ss_conf 2304677998999970--7984696888846770-998899999999999732599--28960
Q gi|254780812|r 264 AIGLDWSVPLSFALEL--QKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP--FIFNL 321 (346)
Q Consensus 264 ~isiD~~~dl~~a~~~--~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~--~I~nL 321 (346)
++-.-.+++ ..+ ||..+. -+-|-..+-++++++.+-.+= |.+|-
T Consensus 242 -------iP~~L~~~l~~~~~-------D~~~~~~~G~e~A~~q~~~L~~~GV~g~HfYTlN~ 290 (302)
T TIGR00676 242 -------IPAWLVKRLEKYED-------DPEEVRAVGIEYATDQCEDLIAEGVPGIHFYTLNR 290 (302)
T ss_pred -------CHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHCCC
T ss_conf -------20899999863048-------98899999999999999999976897211210488
No 124
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=77.94 E-value=4.1 Score=21.67 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=8.3
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 77777549816784
Q gi|254780812|r 192 LIAQIHAGVDVIQI 205 (346)
Q Consensus 192 l~~Qi~aGad~iqI 205 (346)
++.-.+||.|.|+|
T Consensus 156 A~rA~~AGfDgVEI 169 (382)
T cd02931 156 AVIAKEAGFDGVEI 169 (382)
T ss_pred HHHHHHCCCCEEEE
T ss_conf 99999849998996
No 125
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=77.81 E-value=3.7 Score=22.05 Aligned_cols=123 Identities=17% Similarity=0.246 Sum_probs=67.1
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC-CCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 301372228999999999999997777754981678438-3110068356777612722689999863088623602431
Q gi|254780812|r 169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFD-THAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFD-s~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
-+|.+|+.+.++.+ +.|+|++.+.= +.-|.-..+ -.-.-++++.+++.. ++|+..|.
T Consensus 153 ~~~T~pe~a~~Fv~--------------~TgvD~LAvaiGn~HG~yk~~------p~l~~~~l~~i~~~~-~vPLVLHG- 210 (285)
T PRK07709 153 VIYADPAECKHLVE--------------ATGIDCLAPALGSVHGPYKGE------PNLGFAEMEQVRDFT-GVPLVLHG- 210 (285)
T ss_pred CCCCCHHHHHHHHH--------------HHCCCEEEHHHCCCCCCCCCC------CCCCHHHHHHHHHCC-CCCEEEEC-
T ss_conf 51579999999997--------------318788842205555776898------876699999998405-99879649-
Q ss_pred CCCCCHHHHHC--CCCCCEEECCCCCCHHHH---HH-HCCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 10000134201--478722304677998999---97-07984696888846770-998899999999999732599
Q gi|254780812|r 248 GAGYMLKNYRR--LTDSNAIGLDWSVPLSFA---LE-LQKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 248 g~~~~l~~~~~--~~g~d~isiD~~~dl~~a---~~-~~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~ 316 (346)
|++..-+++.+ ..|+.=+.++......+. ++ +..+ -...||..++ ...+.+++.+++.++.++..|
T Consensus 211 gSG~~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~~~~l~~~---~~~~dp~~~~~~~~~a~~~~v~~ki~~fGS~g 283 (285)
T PRK07709 211 GTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKD---QEVYDPRKFIGPGRDAIKATVIGKIREFGSNG 283 (285)
T ss_pred CCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999998598599988288999999999999739---76479799999999999999999999848898
No 126
>PRK09389 (R)-citramalate synthase; Provisional
Probab=77.63 E-value=3.4 Score=22.27 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 99999777775498167843831100683567776127226899998630886236024311
Q gi|254780812|r 187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG 248 (346)
Q Consensus 187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g 248 (346)
+..+.+++-+++|||.|.+-||.+..+ |..+.+ +++.+++.. ++|+-.||.+
T Consensus 143 fl~e~~~~a~~aga~~i~l~DTvG~~~-P~~~~~--------~i~~l~~~~-~~~i~vH~HN 194 (487)
T PRK09389 143 FLKELYRAGIEAGADRICFCDTVGILT-PERSYE--------LFKRLSESL-KIPISIHCHN 194 (487)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCC-HHHHHH--------HHHHHCCCC-CCEEEEEECC
T ss_conf 999999999973899622488888879-999999--------986300467-8548997059
No 127
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.50 E-value=5.4 Score=20.85 Aligned_cols=17 Identities=12% Similarity=0.345 Sum_probs=7.0
Q ss_pred CHHHHHCCCCCCEEECCC
Q ss_conf 013420147872230467
Q gi|254780812|r 252 MLKNYRRLTDSNAIGLDW 269 (346)
Q Consensus 252 ~l~~~~~~~g~d~isiD~ 269 (346)
.+.+|.. +|+|.||+.+
T Consensus 249 ni~~yA~-tGvD~IS~g~ 265 (281)
T PRK06106 249 TAPAIAA-SGVDLISVGW 265 (281)
T ss_pred HHHHHHH-CCCCEEECCH
T ss_conf 9999997-3999998384
No 128
>PRK13140 consensus
Probab=77.49 E-value=6.4 Score=20.34 Aligned_cols=53 Identities=25% Similarity=0.470 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA 198 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a 198 (346)
.+..+++.++.+|++. ++|++ +++|. || ++.. -.-+|++.-.++
T Consensus 74 ~~~~~~~~~~~~r~~~--~~piv--------lM~Y~------------------N~-----i~~~---G~e~F~~~~~~~ 117 (257)
T PRK13140 74 TLKLLFEQLKDIRKEV--QIPLI--------LMGYL------------------NP-----IMQY---GFEKFCKKCAET 117 (257)
T ss_pred CHHHHHHHHHHHHCCC--CCCEE--------EEECH------------------HH-----HHHH---CHHHHHHHHHHC
T ss_conf 8999999999974368--98889--------99055------------------99-----9851---799999999984
Q ss_pred CCCEEEECC
Q ss_conf 981678438
Q gi|254780812|r 199 GVDVIQIFD 207 (346)
Q Consensus 199 Gad~iqIFD 207 (346)
|+|.+-|-|
T Consensus 118 GvdGlIipD 126 (257)
T PRK13140 118 GIDGVIIPD 126 (257)
T ss_pred CCCEEEECC
T ss_conf 998698359
No 129
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=77.08 E-value=6.5 Score=20.28 Aligned_cols=14 Identities=43% Similarity=0.890 Sum_probs=6.0
Q ss_pred HHHHHHHCCCCEEE
Q ss_conf 99986308862360
Q gi|254780812|r 230 ISAVRRKYPNAKFI 243 (346)
Q Consensus 230 ~~~ik~~~~~vpiI 243 (346)
++.+|+.+|++|+|
T Consensus 126 ik~ir~~~p~~~Ii 139 (325)
T cd00381 126 IKFIKKKYPNVDVI 139 (325)
T ss_pred HHHHHHHCCCCCEE
T ss_conf 99999768997568
No 130
>PRK13115 consensus
Probab=77.06 E-value=6.6 Score=20.26 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=11.9
Q ss_pred HHHHHHHHCCCCEEEECC
Q ss_conf 997777754981678438
Q gi|254780812|r 190 EYLIAQIHAGVDVIQIFD 207 (346)
Q Consensus 190 ~yl~~Qi~aGad~iqIFD 207 (346)
+|++...++|+|.+-|-|
T Consensus 118 ~F~~~~~~~GvdGvIipD 135 (269)
T PRK13115 118 RFARDLAAAGGAGLITPD 135 (269)
T ss_pred HHHHHHHHCCCCEEECCC
T ss_conf 999999973998076478
No 131
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=76.82 E-value=6.7 Score=20.21 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=44.1
Q ss_pred HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf 7777754981678438311006835677761272268999986308862360243110000134201478722304677
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWS 270 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~ 270 (346)
.+...++|+|.|.+-+.-... .....++++.++++..++++++-|...++.........|++.++++..
T Consensus 77 ~~~~~~~g~d~v~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~a~~~g~~~v~~~~~ 145 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL----------AREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNG 145 (200)
T ss_pred HHHHHHCCCCEEEECCCCCCC----------CCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 999998399989978999654----------300689999999844896499968999999999999809979997087
No 132
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=76.38 E-value=6.9 Score=20.13 Aligned_cols=52 Identities=13% Similarity=0.078 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf 9999999777775498167843831100683567776127226899998630886236024
Q gi|254780812|r 185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF 245 (346)
Q Consensus 185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f 245 (346)
|+-+++.++.--++|||++++.=|.-.-.+.+. ...|.++|.++. +.|++.|
T Consensus 81 t~~~i~~a~~A~~~Gadai~v~pP~y~~~s~~~----l~~~~~~ia~a~-----~lPi~lY 132 (284)
T cd00950 81 TAEAIELTKRAEKAGADAALVVTPYYNKPSQEG----LYAHFKAIAEAT-----DLPVILY 132 (284)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHCC-----CCCEEEE
T ss_conf 999999999999839998996266578979999----999999997555-----9977987
No 133
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=76.36 E-value=6.9 Score=20.13 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC--CC--CCC---CCHHHHHC
Q ss_conf 999999777775498167843831100683567776127226899998630886236024--31--100---00134201
Q gi|254780812|r 186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF--AK--GAG---YMLKNYRR 258 (346)
Q Consensus 186 ~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f--~~--g~~---~~l~~~~~ 258 (346)
+.+++.++.--++|||++++.=+.-.-.+++.. ..|.++|.++. +.|++.| +. |.. ..+..+.+
T Consensus 79 ~~~~~~a~~a~~~Gad~i~v~pP~y~~~~~~~i----~~~~~~i~~~~-----~~pi~iYn~P~~~g~~l~~~~l~~L~~ 149 (281)
T cd00408 79 REAIELARHAEEAGADGVLVVPPYYNKPSQEGI----VAHFKAVADAS-----DLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHH----HHHHHHHHHCC-----CCCEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf 999999999997599989987997778999999----99999998555-----997799727753167768999999848
Q ss_pred CCCCCEEECC-CCCCHHHHHH
Q ss_conf 4787223046-7799899997
Q gi|254780812|r 259 LTDSNAIGLD-WSVPLSFALE 278 (346)
Q Consensus 259 ~~g~d~isiD-~~~dl~~a~~ 278 (346)
. .+++++= ..-|+....+
T Consensus 150 ~--~nv~giK~s~~d~~~~~~ 168 (281)
T cd00408 150 H--PNIVGIKDSSGDLDRLTR 168 (281)
T ss_pred C--CCEEEEECCCCCHHHHHH
T ss_conf 9--998999848899999999
No 134
>PRK04180 pyridoxine biosynthesis protein; Provisional
Probab=76.33 E-value=6.8 Score=20.15 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=26.8
Q ss_pred HHHCCCHHHHHHHHHHHCCCCEEECCCCC--CCCCHHH-HHCCCCCCEEECCCC
Q ss_conf 76127226899998630886236024311--0000134-201478722304677
Q gi|254780812|r 220 NYAARSVGRIISAVRRKYPNAKFISFAKG--AGYMLKN-YRRLTDSNAIGLDWS 270 (346)
Q Consensus 220 ~f~~p~~kkI~~~ik~~~~~vpiI~f~~g--~~~~l~~-~~~~~g~d~isiD~~ 270 (346)
++..|| +++..+++.+ ..|+..|+-| +++.--. |++ .|+|.+=+.+-
T Consensus 187 ~~~ap~--elv~~v~~~g-rLPVvnFaAGGiATPADAALmMq-LG~dGVFVGSG 236 (293)
T PRK04180 187 ELGAPY--ELVKEVARLG-RLPVVNFAAGGIATPADAALMMQ-LGADGVFVGSG 236 (293)
T ss_pred HHCCCH--HHHHHHHHHC-CCCEEEECCCCCCCCHHHHHHHH-CCCCEEEECCC
T ss_conf 847768--9999999848-87625532577578056999987-17874675454
No 135
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=76.21 E-value=6.9 Score=20.10 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=5.4
Q ss_pred CCHHHHHHHHHH
Q ss_conf 320111147999
Q gi|254780812|r 137 HITLIGFCGAPW 148 (346)
Q Consensus 137 ~~pLIGF~GgP~ 148 (346)
++|+|=|.|+|=
T Consensus 59 ~lPviLfPg~~~ 70 (231)
T pfam01884 59 GLPIILFPGNPS 70 (231)
T ss_pred CCCEEEECCCHH
T ss_conf 999899569867
No 136
>KOG2550 consensus
Probab=76.21 E-value=5.9 Score=20.57 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf 9977777549816784383110068356777612722689999863088623602431100001342014787223046
Q gi|254780812|r 190 EYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLD 268 (346)
Q Consensus 190 ~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD 268 (346)
.-+...+++|+|+| |.||+-|. .. |.-+.+..+|+++|...+|.=.-=+...-+++.+ .|+|.+-+.
T Consensus 254 ~rl~ll~~aGvdvv-iLDSSqGn--S~--------~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~-aGaDgLrVG 320 (503)
T KOG2550 254 ERLDLLVQAGVDVV-ILDSSQGN--SI--------YQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIA-AGADGLRVG 320 (503)
T ss_pred HHHHHHHHCCCCEE-EEECCCCC--CH--------HHHHHHHHHHHHCCCCEEECCCEEEHHHHHHHHH-CCCCEEEEC
T ss_conf 77888663488689-99668885--04--------5799999998668886343165533888999987-367605752
No 137
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695 Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis. Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis. .
Probab=76.11 E-value=2.4 Score=23.38 Aligned_cols=152 Identities=21% Similarity=0.295 Sum_probs=75.9
Q ss_pred HHHCCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHHH----
Q ss_conf 432443373168875222333335542056701234432378777876421024532011-----11479999999----
Q gi|254780812|r 82 DALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLI-----GFCGAPWTVAS---- 152 (346)
Q Consensus 82 ealG~~v~f~~~~GP~~~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLI-----GF~GgP~Tlas---- 152 (346)
|..|.+=-|..|-| +- ....=.|| .....|..|..-++.|-.- .++||| || |+||+++-
T Consensus 30 e~aGF~A~YLSGaa--~a-----a~sLGlPD--LG~~tL~Eva~~~r~Itr~--~~LPlLVD~DTGF-Gea~nvaRTVre 97 (287)
T TIGR02317 30 ERAGFEAIYLSGAA--VA-----AGSLGLPD--LGITTLTEVAERARRITRV--TDLPLLVDADTGF-GEALNVARTVRE 97 (287)
T ss_pred HHCCCCEEEEHHHH--HH-----HHHHCCCC--CCCCCHHHHHHHHHHHHHH--CCCCEEEEEECCC-CCHHHHHHHHHH
T ss_conf 86375566101687--74-----13206776--7667878999998877753--0487278633289-835449999999
Q ss_pred --------HHHCCC--CCC-CHHHHHHHHCCCHHHHHHHHH---------------------HHHHHHHHHHHHHHHCCC
Q ss_conf --------961246--776-524677530137222899999---------------------999999999777775498
Q gi|254780812|r 153 --------YMISGG--FIK-DHGQNRVFAYQNSRAFNWLLD---------------------FLSDVSAEYLIAQIHAGV 200 (346)
Q Consensus 153 --------YmieG~--~sk-~~~~~~~~~~~~p~~~~~ll~---------------------~lt~~~~~yl~~Qi~aGa 200 (346)
--||-. +.| .++..|.+ .+..|-+.++-- =-.|..|+=+++-|||||
T Consensus 98 me~AGaAa~HiEDQv~pKrCGHL~gK~l-v~~~eMv~kI~AAv~Ar~De~f~iiARTDA~AvEGld~AI~RA~aYvEAGA 176 (287)
T TIGR02317 98 MEDAGAAAVHIEDQVLPKRCGHLNGKEL-VSRDEMVRKIKAAVDARRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGA 176 (287)
T ss_pred HHHHHHHHCCHHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 9984454004677425442678988740-488779999999714789997277531023421365889999986787261
Q ss_pred CEEEECCCCHHHC-CHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC----CCCCCCCCHHHHHCCCCCCE
Q ss_conf 1678438311006-8356777612722689999863088623602----43110000134201478722
Q gi|254780812|r 201 DVIQIFDTHAGCL-GEHEFENYAARSVGRIISAVRRKYPNAKFIS----FAKGAGYMLKNYRRLTDSNA 264 (346)
Q Consensus 201 d~iqIFDs~ag~L-s~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~----f~~g~~~~l~~~~~~~g~d~ 264 (346)
|+| | +.-| +.++|++|+ +.| |++|++= |.|..-.-..++.+ .|++.
T Consensus 177 D~I--F---pEAL~~~~eFr~Fa--------~~v----k~vPLLANMTEFGKTPl~t~deL~~-~Gy~m 227 (287)
T TIGR02317 177 DMI--F---PEALESEEEFREFA--------KAV----KDVPLLANMTEFGKTPLYTADELRE-IGYKM 227 (287)
T ss_pred CCC--H---HHHHHHHHHHHHHH--------HHC----CCCCEECCCCCCCCCCCCCHHHHHH-CCCEE
T ss_conf 531--3---87853288889999--------866----8984230112026764565798964-89448
No 138
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.09 E-value=6.7 Score=20.22 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=34.6
Q ss_pred CCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCC--CHHHHH
Q ss_conf 816784383110068356777612722689999863088623602431100001342014787223046779--989999
Q gi|254780812|r 200 VDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSV--PLSFAL 277 (346)
Q Consensus 200 ad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~--dl~~a~ 277 (346)
-|.|+|||..-...+ -+.+.+..+++..|..+|..=+... .......+ .|+|++=+|+-- ++..+.
T Consensus 160 sd~iLiKdNHi~~~g----------~i~~~v~~~~~~~~~~kIeVEv~tl-~q~~~a~~-~gaDiI~LDnms~~~lk~av 227 (277)
T PRK05742 160 YDAFLIKENHIAACG----------GIAQAVAAAHRIAPGKPVEVEVESL-DELRQALA-AGADIVMLDELSLDDMREAV 227 (277)
T ss_pred CCEEEEECCHHHHCC----------CHHHHHHHHHHHCCCCCEEEEECCH-HHHHHHHH-CCCCEEEECCCCHHHHHHHH
T ss_conf 635897454655506----------7999999999848997269996779-99999874-69989998699999999999
Q ss_pred HH-CCCE--EEECCCCH
Q ss_conf 70-7984--69688884
Q gi|254780812|r 278 EL-QKEG--PVQGNLDP 291 (346)
Q Consensus 278 ~~-~~~~--~lqGNldP 291 (346)
++ .++. -..||+++
T Consensus 228 ~~~~~~~~iEaSGGI~~ 244 (277)
T PRK05742 228 RLTAGRAKLEASGGINE 244 (277)
T ss_pred HHHCCCEEEEEECCCCH
T ss_conf 97479748999889999
No 139
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=75.96 E-value=7 Score=20.06 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 336688999999999973
Q gi|254780812|r 326 TPQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 326 ~p~tp~eNv~~~v~~vr~ 343 (346)
.-..+++.|+.|+++||.
T Consensus 237 ~n~VD~~RV~~fm~~vr~ 254 (254)
T pfam03437 237 NNEVDIERVSKIAELAKH 254 (254)
T ss_pred CCCCCHHHHHHHHHHHCC
T ss_conf 897799999999998419
No 140
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=75.78 E-value=7.1 Score=20.03 Aligned_cols=91 Identities=14% Similarity=0.062 Sum_probs=44.5
Q ss_pred HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC-CC---CCHHHHHCCCCCC
Q ss_conf 9999777775498167843831100683567776127226899998630886236024311-00---0013420147872
Q gi|254780812|r 188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG-AG---YMLKNYRRLTDSN 263 (346)
Q Consensus 188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g-~~---~~l~~~~~~~g~d 263 (346)
.++.++.--++|||++++.-|+--..+++. ...|.++|.++. +.|++.|-+. .. ..+..+.+. -.+
T Consensus 88 ai~la~~a~~~Gad~v~v~pPyy~~~~~~~----l~~~f~~ia~a~-----~~pi~lYn~~~~~~~~~~l~~L~~~-~p~ 157 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLPPYLINGEQEG----LYAHVEAVCEST-----DLGVIVYQRDNAVLNADTLERLADR-CPN 157 (296)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHHC-----CCCEEEECCCCCCCCHHHHHHHHHC-CCC
T ss_conf 999999998759997897799889999999----999999999715-----9977873077878799999999815-798
Q ss_pred EEECCCC-CCHHHHHH----HCCCEEEECC
Q ss_conf 2304677-99899997----0798469688
Q gi|254780812|r 264 AIGLDWS-VPLSFALE----LQKEGPVQGN 288 (346)
Q Consensus 264 ~isiD~~-~dl~~a~~----~~~~~~lqGN 288 (346)
++++=+. -|+....+ .+++..+.+.
T Consensus 158 i~giK~s~~d~~~~~~~~~~~~~~~~~~~g 187 (296)
T TIGR03249 158 LVGFKDGIGDMEQMIEITQRLGDRLGYLGG 187 (296)
T ss_pred EEEEEECCCCHHHHHHHHHHCCCCCEEEEC
T ss_conf 799997766899999999973997279738
No 141
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=75.68 E-value=7.1 Score=20.01 Aligned_cols=85 Identities=24% Similarity=0.253 Sum_probs=52.8
Q ss_pred HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf 99997777754981678438311006835677761272268999986308862360243110000134201478722304
Q gi|254780812|r 188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGL 267 (346)
Q Consensus 188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isi 267 (346)
..+-+.+-+++|+++||+-|-. .+...+.+.+ +++-+-+++. ++|.|.-- -.+++-..++|++++
T Consensus 157 l~~~Ve~AL~gGv~ivQlR~K~---~~~~~~l~~A----~~l~~Lc~~y--~a~fIIND------rvDlAlav~ADGVHL 221 (345)
T PRK02615 157 LLEVVEAALKAGVKLVQYRDKT---GDDRERLEEA----KQLKELCKRY--GALFIVND------RVDIALAVDADGVHL 221 (345)
T ss_pred HHHHHHHHHHCCCCEEEEECCC---CCHHHHHHHH----HHHHHHHHHH--CCEEEEEC------CHHHHHHCCCCEEEE
T ss_conf 9999999997599889830589---9999999999----9999999995--99489819------699999749987755
Q ss_pred CCC-CCHHHHHHHCCCEEEEC
Q ss_conf 677-99899997079846968
Q gi|254780812|r 268 DWS-VPLSFALELQKEGPVQG 287 (346)
Q Consensus 268 D~~-~dl~~a~~~~~~~~lqG 287 (346)
+.. +++..+|++.+.-.|.|
T Consensus 222 GQ~Dlpi~~aR~llG~~~iIG 242 (345)
T PRK02615 222 GQEDLPLAVARQLLGPEKIIG 242 (345)
T ss_pred CCCCCCHHHHHHHCCCCCEEE
T ss_conf 888789999998739991899
No 142
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=75.38 E-value=2.3 Score=23.51 Aligned_cols=169 Identities=18% Similarity=0.252 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CCEEEEC-
Q ss_conf 1147999999996124677652467753013722289999999999999977777549--------------8167843-
Q gi|254780812|r 142 GFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG--------------VDVIQIF- 206 (346)
Q Consensus 142 GF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG--------------ad~iqIF- 206 (346)
|-+|==.|||.- -..+..|....-=.++.||.-...+ -.|++.=-|.+ .+++-|=
T Consensus 1175 G~vGIIl~LAM~---------I~sTlQWAV~sSI~VDgLMRSV~RV-FKfID~P~E~~~~~~~~~~~k~g~~s~~lvI~N 1244 (1534)
T TIGR01271 1175 GEVGIILTLAMN---------ILSTLQWAVNSSIDVDGLMRSVSRV-FKFIDLPQEESKPSKSGKKYKNGQLSKVLVIEN 1244 (1534)
T ss_pred CEEEHHHHHHHH---------HHHHHHHHHHCCEECCHHHHEEEHH-EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 302035788999---------9888877875000001122100020-233336788886777766544677774577607
Q ss_pred ------CCC--HHHCCHHHHHHHHCCCHH---HHHHHHH-HHCCCCEEECCCC---CCCCCHHHHHCCCC------CCEE
Q ss_conf ------831--100683567776127226---8999986-3088623602431---10000134201478------7223
Q gi|254780812|r 207 ------DTH--AGCLGEHEFENYAARSVG---RIISAVR-RKYPNAKFISFAK---GAGYMLKNYRRLTD------SNAI 265 (346)
Q Consensus 207 ------Ds~--ag~Ls~~~f~~f~~p~~k---kI~~~ik-~~~~~vpiI~f~~---g~~~~l~~~~~~~g------~d~i 265 (346)
|-| .|...-+. .-.+|+. -+.+.+- .-.+|-.+....| |.+.++..+.++.. +|++
T Consensus 1245 ~H~~~dd~WP~~G~M~V~~---LT~KYT~~G~avL~dlSFsv~~GQ~VGlLGRTGsGKSTLLSAlLRL~~T~GEI~IDGv 1321 (1534)
T TIGR01271 1245 KHVKKDDIWPSGGQMDVKD---LTAKYTEAGRAVLQDLSFSVEAGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGV 1321 (1534)
T ss_pred CCCCCCCCCCCCCEEEECC---CEEEECCCCHHHHHHCCEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEECCE
T ss_conf 7676467799988567525---4023210205556413414438835775302687678999999996077981676233
Q ss_pred ECCCCCCHHHHHH---HCC-CE-EEEC----CCCHHHHCCCHHH--HHHHH--HHHHHHHCC--------CCCEEEECCC
Q ss_conf 0467799899997---079-84-6968----8884677099889--99999--999997325--------9928960897
Q gi|254780812|r 266 GLDWSVPLSFALE---LQK-EG-PVQG----NLDPMRLVVGNQV--MIDGV--NAILDVLGS--------GPFIFNLGHG 324 (346)
Q Consensus 266 siD~~~dl~~a~~---~~~-~~-~lqG----NldP~~L~~~~e~--i~~~~--~~~l~~~~~--------~~~I~nLGhG 324 (346)
|=| .+.|...|+ +-| ++ ++.| ||||..=+.+.|- |.+|| +.+++++-+ +|||+|-||-
T Consensus 1322 SW~-SvtLQ~WRKAFGViPQKvFi~sGTFR~NLDPy~~~SD~E~WkVaeEVGLkSvIEQFPdKLdF~L~DGGyvLS~GHK 1400 (1534)
T TIGR01271 1322 SWN-SVTLQKWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1400 (1534)
T ss_pred EEC-CCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCEEEECCCEEEECCHH
T ss_conf 505-2122003444131563478831551136881342260356666543154311000888412488628678316416
No 143
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit; InterPro: IPR004430 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . Members of this entry are 3-isopropylmalate dehydratase, large subunit, or the large subunit domain of single-chain forms. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures. All are dehydratases (4.2.1 from EC) and bind a [4Fe-4S]-cluster. 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The archaeal leuC-like proteins are not included in group.; GO: 0003861 3-isopropylmalate dehydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex.
Probab=74.87 E-value=1.7 Score=24.35 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=53.8
Q ss_pred HHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC-----CCHHHHHCCCCCCEE
Q ss_conf 977777549816784383110068356777612722689999863088623602431100-----001342014787223
Q gi|254780812|r 191 YLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG-----YMLKNYRRLTDSNAI 265 (346)
Q Consensus 191 yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~-----~~l~~~~~~~g~d~i 265 (346)
-+++-||+||- ||++.|++ --++++|.+ -|=|||.. ..++.+.-. +.-
T Consensus 225 ~CNMaIE~GAr--------AGliaPDE----------tTF~Y~K~R------~~aPKG~ef~~AVayWKtL~tD---~gA 277 (472)
T TIGR00170 225 VCNMAIEAGAR--------AGLIAPDE----------TTFEYVKGR------PHAPKGKEFDKAVAYWKTLKTD---EGA 277 (472)
T ss_pred HHHHHHHHHHH--------CCCCCCCC----------HHHHHCCCC------CCCCCCCCHHHHHHHHHHCCCC---CCC
T ss_conf 44577886322--------27628840----------246620768------8888877678999987533698---887
Q ss_pred ECCCCCCHHHHHHH--------CC--CEEEECCC-CHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 04677998999970--------79--84696888-84677099889999999999973
Q gi|254780812|r 266 GLDWSVPLSFALEL--------QK--EGPVQGNL-DPMRLVVGNQVMIDGVNAILDVL 312 (346)
Q Consensus 266 siD~~~dl~~a~~~--------~~--~~~lqGNl-dP~~L~~~~e~i~~~~~~~l~~~ 312 (346)
.+|..+.|+ |.++ +| =+++.+++ ||..+-.+-+ +++..+-|.-+
T Consensus 278 ~fD~~i~l~-a~~i~P~vTWGtnPg~vl~v~~~vP~P~~~~dp~~--k~~aerAl~Ym 332 (472)
T TIGR00170 278 KFDTVITLE-AEDISPQVTWGTNPGQVLPVNEEVPDPKSFADPVK--KASAERALAYM 332 (472)
T ss_pred CCCCEEEEC-CEEECCEEECCCCCCCEEECCCCCCCCCCCCCHHH--HHHHHHHHHHH
T ss_conf 236368852-51315546537899826733788877512378445--77899999970
No 144
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=74.79 E-value=7.5 Score=19.86 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC----CCHHHHHCCCCCCE
Q ss_conf 99977777549816784383110068356777612722689999863088623602431100----00134201478722
Q gi|254780812|r 189 AEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG----YMLKNYRRLTDSNA 264 (346)
Q Consensus 189 ~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~----~~l~~~~~~~g~d~ 264 (346)
++.++.--+.|||++++.=++--..+.+. +..|.++|.++. +.|++.|.+... ..+..+.+. -.++
T Consensus 84 i~la~~a~~~Gadav~v~pPy~~~~~~~~----l~~~~~~ia~a~-----~lpi~lYn~~~~~~~~~~l~~L~~~-~p~i 153 (289)
T cd00951 84 IAYAQAAEKAGADGILLLPPYLTEAPQEG----LYAHVEAVCKST-----DLGVIVYNRANAVLTADSLARLAER-CPNL 153 (289)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHHC-----CCCEEECCCCCCCCCHHHHHHHHHH-CCCE
T ss_conf 99999999759999997698888999999----999999999846-----9986614887767789999999983-6878
Q ss_pred EECCCC-CCHHHHHH----HCCCEEEECCC
Q ss_conf 304677-99899997----07984696888
Q gi|254780812|r 265 IGLDWS-VPLSFALE----LQKEGPVQGNL 289 (346)
Q Consensus 265 isiD~~-~dl~~a~~----~~~~~~lqGNl 289 (346)
+++=+. -|+....+ .+++..+.|++
T Consensus 154 ~giK~s~~d~~~~~~~~~~~~~~~~~~~g~ 183 (289)
T cd00951 154 VGFKDGVGDIELMRRIVAKLGDRLLYLGGL 183 (289)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCCEEEECC
T ss_conf 999978889999999999759982898589
No 145
>PRK13139 consensus
Probab=74.45 E-value=7.7 Score=19.80 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA 198 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a 198 (346)
.+..+++-++.+|++. ++|++ +++|. || ++.. -.-+|++..-++
T Consensus 76 ~~~~~~~~~~~~~~~~--~~piv--------lM~Y~------------------N~-----i~~~---G~e~F~~~~~~~ 119 (254)
T PRK13139 76 KVRECFDFAREVVAAF--NIPFL--------FMTYY------------------NI-----LFKY---GVERFIDEVADI 119 (254)
T ss_pred CHHHHHHHHHHHHHCC--CCCEE--------EEEEH------------------HH-----HHHC---CHHHHHHHHHHC
T ss_conf 7999999999997248--97689--------99525------------------99-----9870---999999999975
Q ss_pred CCCEEEECCCCHHHCCHHHHHHH
Q ss_conf 98167843831100683567776
Q gi|254780812|r 199 GVDVIQIFDTHAGCLGEHEFENY 221 (346)
Q Consensus 199 Gad~iqIFDs~ag~Ls~~~f~~f 221 (346)
|+|.+-|-| |++++-.+|
T Consensus 120 Gv~GvIipD-----LP~eE~~~~ 137 (254)
T PRK13139 120 GVKGLIVPD-----LPPEQAQDY 137 (254)
T ss_pred CCCEEECCC-----CCHHHHHHH
T ss_conf 998586479-----997889999
No 146
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVA cPLA2, an 85 kDa protein, consists of two domains: the regulatory C2 domain and the alpha/beta hydrolase PLA2 domain. Group IVA cPLA2 is also referred to as cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (cPLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile
Probab=74.36 E-value=7.7 Score=19.78 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=10.0
Q ss_pred HHHCCCCEEEECCCCHH
Q ss_conf 77549816784383110
Q gi|254780812|r 195 QIHAGVDVIQIFDTHAG 211 (346)
Q Consensus 195 Qi~aGad~iqIFDs~ag 211 (346)
|=+-.+|+|--||-+|+
T Consensus 341 rP~R~VDvIisfD~Sa~ 357 (505)
T cd07200 341 RPQRGVDLIISFDFSAR 357 (505)
T ss_pred CCCCCCCEEEEEECCCC
T ss_conf 88976677999757898
No 147
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=74.28 E-value=7.7 Score=19.77 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=35.0
Q ss_pred HHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf 99777775498167843831100683567776127226899998630886236024311000013420147872230467
Q gi|254780812|r 190 EYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDW 269 (346)
Q Consensus 190 ~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~ 269 (346)
..+..-+++|++++|+-|-. .+.+.+. .-.+++.+-.++. ++|+|.. + -.++....++|.+++..
T Consensus 25 ~~ve~al~~Gv~~vQlR~K~---~~~~~~~----~~a~~~~~lc~~~--~v~liIN--d----~~dlA~~~~AdGVHlGq 89 (211)
T COG0352 25 EWVEAALKGGVTAVQLREKD---LSDEEYL----ALAEKLRALCQKY--GVPLIIN--D----RVDLALAVGADGVHLGQ 89 (211)
T ss_pred HHHHHHHHCCCEEEEEECCC---CCHHHHH----HHHHHHHHHHHHH--CCEEEEC--C----CHHHHHHCCCCEEEECC
T ss_conf 99999996799499980289---8749999----9999999999981--9809966--8----39999767998897087
Q ss_pred C-CCHHHHHH
Q ss_conf 7-99899997
Q gi|254780812|r 270 S-VPLSFALE 278 (346)
Q Consensus 270 ~-~dl~~a~~ 278 (346)
. .++..+++
T Consensus 90 ~D~~~~~ar~ 99 (211)
T COG0352 90 DDMPLAEARE 99 (211)
T ss_pred CCCCHHHHHH
T ss_conf 6545588997
No 148
>pfam05913 DUF871 Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.
Probab=74.09 E-value=7.8 Score=19.74 Aligned_cols=15 Identities=27% Similarity=0.095 Sum_probs=10.5
Q ss_pred CCCCEEEECCCCHHH
Q ss_conf 498167843831100
Q gi|254780812|r 198 AGVDVIQIFDTHAGC 212 (346)
Q Consensus 198 aGad~iqIFDs~ag~ 212 (346)
.++|.|.|-|+.++.
T Consensus 211 ~~iD~V~IGD~~~s~ 225 (357)
T pfam05913 211 GLIDDVLIGDAYASE 225 (357)
T ss_pred CCCCEEEECCCCCCH
T ss_conf 898979986999999
No 149
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=74.09 E-value=7.8 Score=19.74 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC--CC--CCC---CCHHHHH
Q ss_conf 9999999777775498167843831100683567776127226899998630886236024--31--100---0013420
Q gi|254780812|r 185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF--AK--GAG---YMLKNYR 257 (346)
Q Consensus 185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f--~~--g~~---~~l~~~~ 257 (346)
|+.+++.++.-.++|||++++.=+.-...+.+. ...|.+.|.++. +.|+++| +. |.. ..+..+.
T Consensus 85 t~~ai~~a~~a~~~Gad~v~~~pP~y~~~~~~~----i~~~f~~va~a~-----~~pi~iYn~P~~tg~~~~~~~l~~L~ 155 (294)
T PRK04147 85 TAEAQELAKYATELGYDAISAVTPFYYPFSFEE----ICDYYREIIDSA-----DNPMIVYNIPALTGVNLSLDQFNELF 155 (294)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHHC-----CCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 899999999999759988997278677899899----999999998504-----99778875675416788999999995
Q ss_pred CCCCCCEEECC-CCCCHHH
Q ss_conf 14787223046-7799899
Q gi|254780812|r 258 RLTDSNAIGLD-WSVPLSF 275 (346)
Q Consensus 258 ~~~g~d~isiD-~~~dl~~ 275 (346)
+. .+++++= ...|+..
T Consensus 156 ~~--~~i~giK~s~~d~~~ 172 (294)
T PRK04147 156 TL--PKIIGVKQTAGDLYQ 172 (294)
T ss_pred CC--CCEEEEEECCCCHHH
T ss_conf 68--998899928899999
No 150
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210 This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=73.62 E-value=8 Score=19.66 Aligned_cols=131 Identities=11% Similarity=0.206 Sum_probs=80.5
Q ss_pred HHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEE--ECCCCCCCCC--HH--------HHHCCCCCC
Q ss_conf 75498167843831100683567776127226899998630886236--0243110000--13--------420147872
Q gi|254780812|r 196 IHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKF--ISFAKGAGYM--LK--------NYRRLTDSN 263 (346)
Q Consensus 196 i~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpi--I~f~~g~~~~--l~--------~~~~~~g~d 263 (346)
|..|||+|.|==--++-=.+++|++.. +|.+-. +.+ |+|+ +-|+||..=. .. .+....|+|
T Consensus 100 i~~GADAVS~HvNvGs~~e~d~~~~lg-----~vA~~a-d~~-GvPlLAMmYaRG~~i~~e~d~~~v~HAaRlg~ElGAD 172 (259)
T TIGR01949 100 IRLGADAVSIHVNVGSDTEADQIEDLG-----DVAEIA-DDW-GVPLLAMMYARGPRIDDEVDPEVVAHAARLGEELGAD 172 (259)
T ss_pred HHCCCCEEEEEEECCCCCCHHHHHHHH-----HHHHHH-HHC-CCCHHECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 732898679988648987389999998-----999988-654-8842011278868876644767888887653534577
Q ss_pred EEECCCCCCHHHHHHH----CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCC----CCCEEEECCCCCCCCCHHHHH
Q ss_conf 2304677998999970----79846968888467709988999999999997325----992896089763366889999
Q gi|254780812|r 264 AIGLDWSVPLSFALEL----QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGS----GPFIFNLGHGITPQVDPKNVL 335 (346)
Q Consensus 264 ~isiD~~~dl~~a~~~----~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~----~~~I~nLGhGi~p~tp~eNv~ 335 (346)
++=+-|.=|++-..+. ...+++-|. +| +.+.+++.+-++.-++++.. +.-||+ | ++|..=.+
T Consensus 173 vvK~~Y~Gd~~SF~~VV~~c~~PVvvAGG-~k---~~s~~efLq~v~DA~~aGAAGvs~GRnvFq--h----~~p~~~~~ 242 (259)
T TIGR01949 173 VVKVPYTGDIDSFEEVVKACAVPVVVAGG-PK---LASDREFLQMVKDAMEAGAAGVSVGRNVFQ--H----DTPVAITK 242 (259)
T ss_pred EEEECCCCCHHHHHHHHCCCCCCEEEECC-CC---CCCCHHHHHHHHHHHHHCCCCEECCCCCCC--C----CCHHHHHH
T ss_conf 66514317746799996217877787377-79---887467778899999818782310563014--6----88789999
Q ss_pred HHHHHHHH
Q ss_conf 99999973
Q gi|254780812|r 336 DLVKTVRS 343 (346)
Q Consensus 336 ~~v~~vr~ 343 (346)
|+-.-||+
T Consensus 243 Av~~iVH~ 250 (259)
T TIGR01949 243 AVSAIVHE 250 (259)
T ss_pred HHHHHCCC
T ss_conf 99873469
No 151
>TIGR00067 glut_race glutamate racemase; InterPro: IPR004391 Glutamate racemase (5.1.1.3 from EC) provides the (R)-glutamic acid required for cell wall biosynthesis. It converts L-glutamate to D-glutamate during peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases.; GO: 0008881 glutamate racemase activity, 0009252 peptidoglycan biosynthetic process.
Probab=73.61 E-value=2.8 Score=22.91 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=19.0
Q ss_pred HHHHHHHHCCCHHHHHHHHH--HHCCCC
Q ss_conf 35677761272268999986--308862
Q gi|254780812|r 215 EHEFENYAARSVGRIISAVR--RKYPNA 240 (346)
Q Consensus 215 ~~~f~~f~~p~~kkI~~~ik--~~~~~v 240 (346)
.+..+++++.++|.+...+. +..+++
T Consensus 154 ~~~~~~~~~~~lk~~l~pl~~l~~~~d~ 181 (262)
T TIGR00067 154 GEFEEDYALECLKAYLSPLLRLDTQIDT 181 (262)
T ss_pred HCCCHHHHHHHHHHHCCCHHHHCCCCCE
T ss_conf 0244158999999860526774289987
No 152
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=73.60 E-value=4.9 Score=21.15 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 889999999999973
Q gi|254780812|r 298 NQVMIDGVNAILDVL 312 (346)
Q Consensus 298 ~e~i~~~~~~~l~~~ 312 (346)
.+.+.+++.+-|+..
T Consensus 214 ~~~F~~~y~~~l~~~ 228 (252)
T PRK01683 214 QQAFLTRYHQMLDEA 228 (252)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999986
No 153
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=73.58 E-value=5 Score=21.11 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHH
Q ss_conf 23787778764210245-32011114
Q gi|254780812|r 120 LLPIFQSISILRKKLPN-HITLIGFC 144 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~-~~pLIGF~ 144 (346)
+.++.+.++.+++.++. .+|+|..+
T Consensus 73 ~~~~~~~l~~~~~~~~~~~~pvi~si 98 (294)
T cd04741 73 LDYYLEYIRTISDGLPGSAKPFFISV 98 (294)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 89999999998654655587089989
No 154
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=73.43 E-value=2.9 Score=22.79 Aligned_cols=121 Identities=16% Similarity=0.240 Sum_probs=65.4
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 30137222899999999999999777775498167843-83110068356777612722689999863088623602431
Q gi|254780812|r 169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
-++.+|+.+.++.+. .|+|++.+. -+.-|.-.++ -.-.-++++.+++.. ++|+..|.
T Consensus 152 ~~~T~peea~~Fv~~--------------TgvD~LAvaiGn~HG~y~~~------p~l~~~~L~~I~~~~-~iPLVLHG- 209 (286)
T PRK12738 152 AFLTDPQEAKRFVEL--------------TGVDSLAVAIGTAHGLYSKT------PKIDFQRLAEIREVV-DVPLVLHG- 209 (286)
T ss_pred CCCCCHHHHHHHHHH--------------HCCCEEHHHHCCCCCCCCCC------CCCCHHHHHHHHHCC-CCCEEEEC-
T ss_conf 357999999999998--------------79781223323546777999------947899999997307-99989769-
Q ss_pred CCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HH-H--CCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 100001342014--78722304677998999---97-0--7984696888846770-998899999999999732599
Q gi|254780812|r 248 GAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LE-L--QKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 248 g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~-~--~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~ 316 (346)
|++..-+++.+. .|+.=++++......+. |+ + .++ ..||..++ ...+.+++.+++.++.+++.+
T Consensus 210 gSG~~~e~i~~ai~~Gi~KvNi~T~l~~a~~~~~r~~l~~~p~-----~~dp~~~l~~~~~a~~~~v~~ki~~~GS~g 282 (286)
T PRK12738 210 ASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQ-----GNDPRYYMRVGMDAMKEVVRNKINVCGSAN 282 (286)
T ss_pred CCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999769069984858999999999999986978-----688699999999999999999999849988
No 155
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=73.39 E-value=8.1 Score=19.63 Aligned_cols=125 Identities=11% Similarity=0.174 Sum_probs=67.0
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC-CCHHHCCHHHHHHHHCCCH-HHHHHHHHHHCCCCEEECCC
Q ss_conf 301372228999999999999997777754981678438-3110068356777612722-68999986308862360243
Q gi|254780812|r 169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFD-THAGCLGEHEFENYAARSV-GRIISAVRRKYPNAKFISFA 246 (346)
Q Consensus 169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFD-s~ag~Ls~~~f~~f~~p~~-kkI~~~ik~~~~~vpiI~f~ 246 (346)
.+|.+|+.+.++. -+.|+|++.+.= +.-|.-.. .|-+ -+.++++++.. ++|+..|.
T Consensus 153 ~~~T~peea~~Fv--------------~~TgvD~LAvaiGt~HG~yk~-------~p~l~~~~L~~I~~~~-~vPLVLHG 210 (286)
T PRK08610 153 IIYADPKECQELV--------------EKTGIDALAPALGSVHGPYKG-------EPKLGFKEMEEIGLST-GLPLVLHG 210 (286)
T ss_pred CCCCCHHHHHHHH--------------HHHCCCEEEEECCCCCCCCCC-------CCCCCHHHHHHHHHHC-CCCEEEEC
T ss_conf 3037999999999--------------973986673111554465589-------9877899999998524-99979658
Q ss_pred CCCCCCHHHHHCC--CCCCEEECCCCCCHHHHHHHCCCEEE-ECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 1100001342014--78722304677998999970798469-6888846770-998899999999999732599
Q gi|254780812|r 247 KGAGYMLKNYRRL--TDSNAIGLDWSVPLSFALELQKEGPV-QGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 247 ~g~~~~l~~~~~~--~g~d~isiD~~~dl~~a~~~~~~~~l-qGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~ 316 (346)
|++..-+++.+. .|+.=++++......+.+.+.....- ....||..++ ...+.+++.+++.++.++..+
T Consensus 211 -gSGi~~e~i~~ai~~Gi~KvNi~T~l~~a~~~~~r~~l~~~p~~~dp~~~~~~~~~a~~~~V~~ki~~fGS~g 283 (286)
T PRK08610 211 -GTGIPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTSN 283 (286)
T ss_pred -CCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -9999999999999859848996718899999999999985977578799999999999999999999838866
No 156
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=73.11 E-value=8.2 Score=19.58 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=31.7
Q ss_pred HHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf 97777754981678438311006835677761272268999986308862360243110000134201478722304677
Q gi|254780812|r 191 YLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWS 270 (346)
Q Consensus 191 yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~ 270 (346)
.++.-+++|++.||+-+.. ++.+.|.+.+ +++.+.+++. ++++|... . .++....++|++++...
T Consensus 17 ~l~~~l~~gv~~iqlR~k~---~~~~~~~~~a----~~~~~~~~~~--~~~liInd-----~-~~lA~~~~~dGvHl~~~ 81 (196)
T cd00564 17 VVEAALKGGVTLVQLREKD---LSARELLELA----RALRELCRKY--GVPLIIND-----R-VDLALAVGADGVHLGQD 81 (196)
T ss_pred HHHHHHHCCCCEEEECCCC---CCHHHHHHHH----HHHHHHHHHH--CCEEEECC-----H-HHHHHHHCCCEEECCCC
T ss_conf 9999998599999986799---8999999999----9999999980--99799788-----6-99999739987955846
Q ss_pred -CCHHHHHH
Q ss_conf -99899997
Q gi|254780812|r 271 -VPLSFALE 278 (346)
Q Consensus 271 -~dl~~a~~ 278 (346)
.++..+|+
T Consensus 82 d~~~~~~r~ 90 (196)
T cd00564 82 DLPVAEARA 90 (196)
T ss_pred CCCHHHHHH
T ss_conf 689999998
No 157
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=72.42 E-value=4 Score=21.77 Aligned_cols=126 Identities=15% Similarity=0.240 Sum_probs=66.8
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCC-HHHHHHHHHHHCCCCEEECCC
Q ss_conf 30137222899999999999999777775498167843-8311006835677761272-268999986308862360243
Q gi|254780812|r 169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARS-VGRIISAVRRKYPNAKFISFA 246 (346)
Q Consensus 169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~-~kkI~~~ik~~~~~vpiI~f~ 246 (346)
-+|.+|+.+.++.+. .|+|++.+- -+.-|.-.. ..|- .-++++++++.. ++|+..|.
T Consensus 150 ~~~T~peea~~Fv~~--------------TgvD~LAvaiG~~HG~yk~------~~p~L~~~~L~~I~~~~-~iPLVlHG 208 (283)
T pfam01116 150 ALYTDPEEAKEFVER--------------TGVDSLAVAIGNVHGVYKP------LEPKLDFDRLKEIQAAV-DVPLVLHG 208 (283)
T ss_pred CCCCCHHHHHHHHHH--------------HCCCEEEEECCCCCCCCCC------CCCCCCHHHHHHHHHHC-CCCEEEEC
T ss_conf 225899999999998--------------6988787643653444689------99866999999999873-99878658
Q ss_pred CCCCCCHHHHHCC--CCCCEEECCCCCCHHHHHHHCCCEE-EECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 1100001342014--7872230467799899997079846-96888846770-998899999999999732599
Q gi|254780812|r 247 KGAGYMLKNYRRL--TDSNAIGLDWSVPLSFALELQKEGP-VQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 247 ~g~~~~l~~~~~~--~g~d~isiD~~~dl~~a~~~~~~~~-lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~ 316 (346)
|++..-+++.+. .|+.=+.++......+...+..... =-++.||..++ ...+.+++.+++.++.++..+
T Consensus 209 -gSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~r~~l~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~fGs~g 281 (283)
T pfam01116 209 -GSGVPDEEIRKAIKLGVAKINIDTDLQWAFTKAVREYLAENPGNYDPRKYLRPAREAMKEVVKEKIRLFGSAG 281 (283)
T ss_pred -CCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -9999999999999839669985759999999999999986978689899999999999999999999968898
No 158
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=72.21 E-value=8.6 Score=19.44 Aligned_cols=144 Identities=13% Similarity=0.120 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEC-CCC---HHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCC
Q ss_conf 999999777775498167843-831---1006835677761272268999986308862360243110000134201478
Q gi|254780812|r 186 DVSAEYLIAQIHAGVDVIQIF-DTH---AGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTD 261 (346)
Q Consensus 186 ~~~~~yl~~Qi~aGad~iqIF-Ds~---ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g 261 (346)
+...+++..+++.|||+|-|- +|. +..+|++.=.+-..|.++.|. +. +++|+..=+.... -.+.-.+ .|
T Consensus 24 ~~a~~~a~~~i~~GAdiIDIG~eSTrPg~~~i~~~eE~~Rl~pvl~~i~----~~-~~v~iSIDT~~~~-Va~~al~-~G 96 (258)
T cd00423 24 DKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALA----GE-PDVPISVDTFNAE-VAEAALK-AG 96 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH----CC-CCCEEEEECCCHH-HHHHHHH-CC
T ss_conf 9999999999987999999798778999974777888888500568874----27-9960999798889-9999998-59
Q ss_pred CCEEE-CCCC---CC-HHHHHHHCCCEEEECCC-CHHHHC-----CC-HHHHHHHHHHHHHHHCC-----CCCEEEECCC
Q ss_conf 72230-4677---99-89999707984696888-846770-----99-88999999999997325-----9928960897
Q gi|254780812|r 262 SNAIG-LDWS---VP-LSFALELQKEGPVQGNL-DPMRLV-----VG-NQVMIDGVNAILDVLGS-----GPFIFNLGHG 324 (346)
Q Consensus 262 ~d~is-iD~~---~d-l~~a~~~~~~~~lqGNl-dP~~L~-----~~-~e~i~~~~~~~l~~~~~-----~~~I~nLGhG 324 (346)
++.|. +... -. ++.+.+.+-.++++=+- .|..+. .+ -+++.+..++-++.+.. ..-|+-.|-|
T Consensus 97 ~~iINDVsg~~~d~~m~~~va~~~~~~ilmH~~~~p~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~Gi~~~~IiiDPGiG 176 (258)
T cd00423 97 ADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIG 176 (258)
T ss_pred CCEEECCHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCC
T ss_conf 98682400310655799999974998898305788655666898664899999999999999998699930088747767
Q ss_pred CCCCCCHHHHHHH
Q ss_conf 6336688999999
Q gi|254780812|r 325 ITPQVDPKNVLDL 337 (346)
Q Consensus 325 i~p~tp~eNv~~~ 337 (346)
.. .|+.+|...+
T Consensus 177 Fg-K~~~~n~~ll 188 (258)
T cd00423 177 FG-KTEEHNLELL 188 (258)
T ss_pred CC-CCHHHHHHHH
T ss_conf 78-8878899999
No 159
>PRK13132 consensus
Probab=71.99 E-value=8.7 Score=19.41 Aligned_cols=17 Identities=12% Similarity=0.258 Sum_probs=11.3
Q ss_pred HHHHHHHCCCCEEEECC
Q ss_conf 97777754981678438
Q gi|254780812|r 191 YLIAQIHAGVDVIQIFD 207 (346)
Q Consensus 191 yl~~Qi~aGad~iqIFD 207 (346)
|++...++|+|.+-|-|
T Consensus 105 F~~~~~~~GvdGlIipD 121 (246)
T PRK13132 105 FVKKAKELGISGLIVPD 121 (246)
T ss_pred HHHHHHHCCCCEEECCC
T ss_conf 99999876998577579
No 160
>PRK08508 biotin synthase; Provisional
Probab=71.73 E-value=8.8 Score=19.37 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 2378777876421024
Q gi|254780812|r 120 LLPIFQSISILRKKLP 135 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~ 135 (346)
+..+.++++.+|++.+
T Consensus 74 ~e~v~~~v~~Ik~~~~ 89 (279)
T PRK08508 74 LEYVAKAAKAVKKEVP 89 (279)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999863379
No 161
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=71.65 E-value=5.7 Score=20.70 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=11.6
Q ss_pred HHCCHHHHHHHHHHHHHH
Q ss_conf 842799999987212876
Q gi|254780812|r 48 MCYTPEYTVELTLQPIRR 65 (346)
Q Consensus 48 ~~~~pela~evtl~p~~r 65 (346)
++.+||.|-.+++.-++.
T Consensus 11 ~~ldpE~aH~~~~~~l~~ 28 (336)
T PRK05286 11 FKLDPERAHELTIRALKR 28 (336)
T ss_pred HCCCHHHHHHHHHHHHHH
T ss_conf 769989999999999998
No 162
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.61 E-value=8.9 Score=19.35 Aligned_cols=10 Identities=20% Similarity=0.229 Sum_probs=4.7
Q ss_pred CCCCEEECCC
Q ss_conf 7872230467
Q gi|254780812|r 260 TDSNAIGLDW 269 (346)
Q Consensus 260 ~g~d~isiD~ 269 (346)
.|+|.+=+|+
T Consensus 207 ~g~diImLDN 216 (277)
T PRK08072 207 AGADIIMFDN 216 (277)
T ss_pred CCCCEEEECC
T ss_conf 7998999879
No 163
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=71.09 E-value=9.1 Score=19.27 Aligned_cols=109 Identities=9% Similarity=0.132 Sum_probs=65.4
Q ss_pred HHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC--CCCCCCCC------H----HHHHCCCCC
Q ss_conf 77549816784383110068356777612722689999863088623602--43110000------1----342014787
Q gi|254780812|r 195 QIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFIS--FAKGAGYM------L----KNYRRLTDS 262 (346)
Q Consensus 195 Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~--f~~g~~~~------l----~~~~~~~g~ 262 (346)
-+..|||+|.+-=.|++--..++ +.-+.++.++.++. +.|++. +++|.... + -.+....|+
T Consensus 85 AvrlGAdaV~~~v~~Gs~~E~~~-----l~~l~~v~~ea~~~--G~Pll~~~yprG~~~~~~~d~~~ia~aaRia~ELGA 157 (235)
T cd00958 85 AVRLGADAVGVTVYVGSEEEREM-----LEELARVAAEAHKY--GLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGA 157 (235)
T ss_pred HHHCCCCEEEEEEECCCCHHHHH-----HHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98355567999986898168999-----99999999999983--997899974168765565668999999999999789
Q ss_pred CEEECCCCCCHHHHHHH----CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 22304677998999970----79846968888467709988999999999997325
Q gi|254780812|r 263 NAIGLDWSVPLSFALEL----QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGS 314 (346)
Q Consensus 263 d~isiD~~~dl~~a~~~----~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~ 314 (346)
|++-+.|.-|.+..+++ .-.+.+.|. | -..+.+++.+.++..++.+..
T Consensus 158 DiVKv~y~g~~e~f~~vv~~~~vPVviaGG--~--k~~~~~~~L~~v~~a~~aGa~ 209 (235)
T cd00958 158 DIVKTKYTGDAESFKEVVEGCPVPVVIAGG--P--KKDSEEEFLKMVYDAMEAGAA 209 (235)
T ss_pred CEEEECCCCCHHHHHHHHHHCCCCEEECCC--C--CCCCHHHHHHHHHHHHHCCCC
T ss_conf 989823999989999999708998998089--9--999999999999999976995
No 164
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=71.04 E-value=9.1 Score=19.26 Aligned_cols=45 Identities=27% Similarity=0.461 Sum_probs=24.4
Q ss_pred HHHHHHCCCCEEEEC-------------------CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC-CCEE
Q ss_conf 777775498167843-------------------83110068356777612722689999863088-6236
Q gi|254780812|r 192 LIAQIHAGVDVIQIF-------------------DTHAGCLGEHEFENYAARSVGRIISAVRRKYP-NAKF 242 (346)
Q Consensus 192 l~~Qi~aGad~iqIF-------------------Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~-~vpi 242 (346)
++.-.+||.|.|+|- |-|+| |.+.--+| ..+|++++++..+ +.|+
T Consensus 160 A~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGG--s~enR~Rf----~~Eii~aVr~~vg~d~~v 224 (336)
T cd02932 160 ARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGG--SLENRMRF----LLEVVDAVRAVWPEDKPL 224 (336)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCC--CHHHHHHH----HHHHHHHHHHHHCCCCCE
T ss_conf 999998399999863137479998369411677786799--78999889----999999999983998870
No 165
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=70.65 E-value=8.6 Score=19.45 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=27.1
Q ss_pred HHHCCCHHHHHHHHHHHCCCCEEECCCCC--CCCCHHH-HHCCCCCCEEECCCC
Q ss_conf 76127226899998630886236024311--0000134-201478722304677
Q gi|254780812|r 220 NYAARSVGRIISAVRRKYPNAKFISFAKG--AGYMLKN-YRRLTDSNAIGLDWS 270 (346)
Q Consensus 220 ~f~~p~~kkI~~~ik~~~~~vpiI~f~~g--~~~~l~~-~~~~~g~d~isiD~~ 270 (346)
++..|| +++..+++.+ ..|+.-|+-| +++.--. |++ .|+|.+=+.+-
T Consensus 178 ~~~ap~--elv~~v~~~g-rLPVvnFaAGGiATPADAALmMq-LG~dGVFVGSG 227 (283)
T cd04727 178 EIQAPY--ELVKETAKLG-RLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSG 227 (283)
T ss_pred HHCCCH--HHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHH-CCCCEEEECCC
T ss_conf 867758--9999999978-97636642678588377999997-28987887765
No 166
>PRK13134 consensus
Probab=70.58 E-value=9.3 Score=19.20 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32378777876421024532011114799999999612467765246775301372228999999999999997777754
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHA 198 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~a 198 (346)
.+..+++.++..|++. ++|+| |++|. || ++.. -.-+|++...++
T Consensus 79 ~~~~~~~~~~~~~~~~--~~piv--------lMtY~------------------N~-----i~~y---G~e~F~~~~~~a 122 (257)
T PRK13134 79 TLRWIMDGLAARKGRL--RAGLV--------LMGYL------------------NP-----FMQY---GFERFVRDAADA 122 (257)
T ss_pred CHHHHHHHHHHHHCCC--CCCEE--------EEECC------------------HH-----HHHH---HHHHHHHHHHHC
T ss_conf 8789999999874468--99989--------98534------------------59-----9974---689999999867
Q ss_pred CCCEEEECCCCHHHCCHHHHHH
Q ss_conf 9816784383110068356777
Q gi|254780812|r 199 GVDVIQIFDTHAGCLGEHEFEN 220 (346)
Q Consensus 199 Gad~iqIFDs~ag~Ls~~~f~~ 220 (346)
|+|.+-|-| |+.++-.+
T Consensus 123 GvdGvIipD-----LP~eE~~~ 139 (257)
T PRK13134 123 GVAGCIIPD-----LPLDEDAD 139 (257)
T ss_pred CCCEEEECC-----CCHHHHHH
T ss_conf 987599469-----99778899
No 167
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=70.36 E-value=9.4 Score=19.16 Aligned_cols=54 Identities=30% Similarity=0.382 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC-CCEEECCCCCC
Q ss_conf 9999977777549816784383110068356777612722689999863088-62360243110
Q gi|254780812|r 187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP-NAKFISFAKGA 249 (346)
Q Consensus 187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~-~vpiI~f~~g~ 249 (346)
...+.+++..++||+.|.+-||- |...|..|.+ +++.++...+ .+++-.||.+.
T Consensus 147 ~l~~~~~~~~~~ga~~i~l~DTv-G~~~P~~~~~--------~i~~l~~~v~~~~~i~~H~HND 201 (409)
T COG0119 147 FLAEVVKAAIEAGADRINLPDTV-GVATPNEVAD--------IIEALKANVPNKVILSVHCHND 201 (409)
T ss_pred HHHHHHHHHHHCCCCEEEECCCC-CCCCHHHHHH--------HHHHHHHHCCCCCEEEEEECCC
T ss_conf 99999999997199499977876-8658799999--------9999998378887388983698
No 168
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=70.16 E-value=9.5 Score=19.13 Aligned_cols=52 Identities=12% Similarity=0.044 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf 9999999777775498167843831100683567776127226899998630886236024
Q gi|254780812|r 185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF 245 (346)
Q Consensus 185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f 245 (346)
|+-+++.++.--++|||++++.=+.-...+++. +..|.+.|.++. +.|++.|
T Consensus 82 t~~~i~~a~~A~~~Gad~i~v~pP~y~~~~~~~----i~~~~~~va~a~-----~lPi~iY 133 (289)
T pfam00701 82 TREAIHLAQLAEAAGADGVLAVTPYYNKPSQEG----LYQHFKAIAAAT-----DLPVILY 133 (289)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHCC-----CCCEEEE
T ss_conf 999999999999749997887799888999999----999999998315-----9977997
No 169
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=70.08 E-value=9.5 Score=19.12 Aligned_cols=124 Identities=16% Similarity=0.232 Sum_probs=65.9
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 30137222899999999999999777775498167843-83110068356777612722689999863088623602431
Q gi|254780812|r 169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
-+|.+|+.+.++.+ +.|+|++.+. -+.-|.-..+- .-.-.+++.+++.. ++|+..|.
T Consensus 152 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~yk~~p------~L~~d~L~~I~~~~-~iPLVLHG- 209 (284)
T PRK12737 152 AMYTNPDAAAEFVE--------------RTGIDSLAVAIGTAHGLYKGEP------KLDFDRLEEIREKV-SIPLVLHG- 209 (284)
T ss_pred HHCCCHHHHHHHHH--------------HHCCCEEEECCCCCCCCCCCCC------CCCHHHHHHHHHHC-CCCEEEEC-
T ss_conf 13179999999999--------------9698987000375356759998------57899999999863-99989668-
Q ss_pred CCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HHHCCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 100001342014--78722304677998999---9707984696888846770-998899999999999732599
Q gi|254780812|r 248 GAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LELQKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 248 g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~~~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~ 316 (346)
|++..-+++.+. .|+.=+.++......+. ++...+- -...||..++ ...+.+++.+++.++.++..|
T Consensus 210 gSG~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~~~~l~~~--p~~~d~~~~~~~~~~a~~e~v~~ki~l~GS~g 282 (284)
T PRK12737 210 ASGVPDEDVKKAISLGICKVNVATELKIAFSDAVKKYFYEN--PKANDPRKYMTPGKEAMKEVVRHKIKVCGSEG 282 (284)
T ss_pred CCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999997795899858589999999999999878--78689699999999999999999999858999
No 170
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=70.06 E-value=9.6 Score=19.12 Aligned_cols=47 Identities=28% Similarity=0.361 Sum_probs=35.0
Q ss_pred HHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 77754981678438311006835677761272268999986308862360243110
Q gi|254780812|r 194 AQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA 249 (346)
Q Consensus 194 ~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~ 249 (346)
.-.++|||.|.+-|| .|...|++.. +++..+++..|++|+-.|+.++
T Consensus 145 ~~~~~G~~~i~l~DT-~G~~~P~~v~--------~lv~~l~~~~~~~~i~~H~Hn~ 191 (237)
T pfam00682 145 VAQEAGATRINIADT-VGVLTPNEAA--------DLISALKDRVPPVIIEVHCHND 191 (237)
T ss_pred HHHHCCCCEEEECCC-CCCCCHHHHH--------HHHHHHHHCCCCCCEEEEECCC
T ss_conf 998619857973686-4557989999--------9999999708987158874488
No 171
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=69.66 E-value=9.7 Score=19.06 Aligned_cols=186 Identities=16% Similarity=0.171 Sum_probs=99.6
Q ss_pred HHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8777876421024-----53201111479999999961246776524677530137222899999999999999777775
Q gi|254780812|r 123 IFQSISILRKKLP-----NHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIH 197 (346)
Q Consensus 123 v~eAi~~~k~~l~-----~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~ 197 (346)
..+|.++-|+--. ..+-+.|.+ ||.+-.... +.+| .--.+-+.+.-.+-+...++
T Consensus 95 n~~aa~iAR~aA~~~~~~k~rfVaGsi-GPt~k~~~~-----~~~~--------------~v~fd~l~~ay~eq~~~Li~ 154 (311)
T COG0646 95 NQKAARIARRAADEAGDPKPRFVAGSI-GPTNKTLSI-----SPDF--------------AVTFDELVEAYREQVEGLID 154 (311)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCCCCCCC-----CCCC--------------CCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999998644788753898732-686776776-----8766--------------63599999999999999983
Q ss_pred CCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC--CC---------CCCHHHHHCCCCCCEEE
Q ss_conf 49816784383110068356777612722689999863088623602431--10---------00013420147872230
Q gi|254780812|r 198 AGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK--GA---------GYMLKNYRRLTDSNAIG 266 (346)
Q Consensus 198 aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~--g~---------~~~l~~~~~~~g~d~is 266 (346)
.|||++ ++++.-+.+.-+ =++...++..++... ..|++.... .+ ...+..+.. .+++.++
T Consensus 155 gG~D~i-LiET~~D~l~~K----aA~~a~~~~~~~~~~---~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~-~~~~~vG 225 (311)
T COG0646 155 GGADLI-LIETIFDTLNAK----AAVFAAREVFEELGV---RLPVMISGTITDSGRTLSGQTIEAFLNSLEH-LGPDAVG 225 (311)
T ss_pred CCCCEE-EEEHHCCHHHHH----HHHHHHHHHHHHCCC---CCCEEEEEEEECCCEECCCCCHHHHHHHHHC-CCCCEEE
T ss_conf 787589-975221689899----999999999873277---6547999998037612379868999998663-5974785
Q ss_pred CCCCCCHHHHHH----H---CC-CEEEECCCC-HHH-----HC-CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH
Q ss_conf 467799899997----0---79-846968888-467-----70-998899999999999732599289608976336688
Q gi|254780812|r 267 LDWSVPLSFALE----L---QK-EGPVQGNLD-PMR-----LV-VGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDP 331 (346)
Q Consensus 267 iD~~~dl~~a~~----~---~~-~~~lqGNld-P~~-----L~-~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~ 331 (346)
+.-..-....+. + .+ -++...|=- |.. .+ .+++.+.+.+..+.+.+.- -|..==|| |.|
T Consensus 226 lNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~v--nIvGGCCG----TTP 299 (311)
T COG0646 226 LNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGGV--NIVGGCCG----TTP 299 (311)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--EEECCCCC----CCH
T ss_conf 345668899999999987416924998079999754688452689989999999999983784--16044369----998
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999973
Q gi|254780812|r 332 KNVLDLVKTVRS 343 (346)
Q Consensus 332 eNv~~~v~~vr~ 343 (346)
|+++++.++|++
T Consensus 300 eHIraia~~v~~ 311 (311)
T COG0646 300 EHIRAIAEAVKG 311 (311)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998429
No 172
>pfam00809 Pterin_bind Pterin binding enzyme. This family includes a variety of pterin binding enzymes that all adopt a TIM barrel fold. The family includes dihydropteroate synthase EC:2.5.1.15 as well as a group methyltransferase enzymes including methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) that catalyses a key step in the Wood-Ljungdahl pathway of carbon dioxide fixation. It transfers the N5-methyl group from methyltetrahydrofolate (CH3-H4folate) to a cob(I)amide centre in another protein, the corrinoid iron-sulfur protein. MeTr is a member of a family of proteins that includes methionine synthase and methanogenic enzymes that activate the methyl group of methyltetra-hydromethano(or -sarcino)pterin.
Probab=69.53 E-value=9.8 Score=19.04 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEC-CC---CHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCC
Q ss_conf 999999777775498167843-83---11006835677761272268999986308862360243110000134201478
Q gi|254780812|r 186 DVSAEYLIAQIHAGVDVIQIF-DT---HAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTD 261 (346)
Q Consensus 186 ~~~~~yl~~Qi~aGad~iqIF-Ds---~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g 261 (346)
+.....++.|++.|||+|-|- +| .+..++++.=.+...|.++.+ ++. ++|+..=+... ...+.-.+ .|
T Consensus 19 ~~a~~~a~~~i~~GAdiIDIG~eSTrPga~~v~~~eE~~Rl~pvl~~l----~~~--~~~iSIDT~~~-~v~~~al~-~G 90 (208)
T pfam00809 19 DKALEQAREMVEEGADIIDIGGESTRPGAGMVSGEEELERLVPVLEAL----RDQ--DVPISIDTFNA-EVAEAALK-AG 90 (208)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH----HCC--CCCEEEECCCH-HHHHHHHH-CC
T ss_conf 999999999998799899868976899986468899999999999986----357--98289979849-99999998-19
Q ss_pred CCEEECCCCC--C--H-HHHHHHCCCEEEECCC-CHHHHCC---CHHHHHHHHHHHH----HHHCC-----CCCEEEECC
Q ss_conf 7223046779--9--8-9999707984696888-8467709---9889999999999----97325-----992896089
Q gi|254780812|r 262 SNAIGLDWSV--P--L-SFALELQKEGPVQGNL-DPMRLVV---GNQVMIDGVNAIL----DVLGS-----GPFIFNLGH 323 (346)
Q Consensus 262 ~d~isiD~~~--d--l-~~a~~~~~~~~lqGNl-dP~~L~~---~~e~i~~~~~~~l----~~~~~-----~~~I~nLGh 323 (346)
+++++=.+.. | + +.+++.+-.++++=+- .|..+.. ...++..++...+ +.+.. ..-|+-.|-
T Consensus 91 ~~iINDvsg~~~d~~~~~~~a~~~~~~vlmh~~~~p~~~~~~~~~~~dv~~~i~~~~~~~i~~~~~~Gi~~~~IiiDPGi 170 (208)
T pfam00809 91 ADIINDSSGGKDDPEMAPLAAEYGAPVVLMHMDGNPQGMQENPEYRVDVVEELLRFLTERLEAAEAAGVPPERIILDPGI 170 (208)
T ss_pred CCEEEECHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCC
T ss_conf 93898701210377999999973999998668999865332676530699999999999999999879897779971887
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 76336688999999
Q gi|254780812|r 324 GITPQVDPKNVLDL 337 (346)
Q Consensus 324 Gi~p~tp~eNv~~~ 337 (346)
|. -.|+..|...+
T Consensus 171 GF-~k~~~~n~~ll 183 (208)
T pfam00809 171 GF-GKTEEHNLELL 183 (208)
T ss_pred CC-CCCHHHHHHHH
T ss_conf 88-89867789999
No 173
>KOG1606 consensus
Probab=69.50 E-value=9.8 Score=19.04 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=20.6
Q ss_pred HHCCCHHHHHHHHHHHCCCCEEECCCCC--CCCCHH-HHHCCCCCCEEECCCC
Q ss_conf 6127226899998630886236024311--000013-4201478722304677
Q gi|254780812|r 221 YAARSVGRIISAVRRKYPNAKFISFAKG--AGYMLK-NYRRLTDSNAIGLDWS 270 (346)
Q Consensus 221 f~~p~~kkI~~~ik~~~~~vpiI~f~~g--~~~~l~-~~~~~~g~d~isiD~~ 270 (346)
.+.||- ++...++.+ ..|+.-|.-| +++.-- -|++ .|||.+=+.+.
T Consensus 192 i~aP~d--Lv~~t~q~G-rlPVV~FAaGGvaTPADAALmMQ-LGCdGVFVGSg 240 (296)
T KOG1606 192 IAAPYD--LVKQTKQLG-RLPVVNFAAGGVATPADAALMMQ-LGCDGVFVGSG 240 (296)
T ss_pred HCCCHH--HHHHHHHCC-CCCEEEECCCCCCCHHHHHHHHH-CCCCEEEECCC
T ss_conf 647089--999999708-77458742567588167999998-08984886554
No 174
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.11 E-value=6.1 Score=20.51 Aligned_cols=27 Identities=7% Similarity=0.087 Sum_probs=13.3
Q ss_pred EECCCCCCC-CCHHHHHCCCCCCEEECCC
Q ss_conf 602431100-0013420147872230467
Q gi|254780812|r 242 FISFAKGAG-YMLKNYRRLTDSNAIGLDW 269 (346)
Q Consensus 242 iI~f~~g~~-~~l~~~~~~~g~d~isiD~ 269 (346)
.+--++|.+ ..+.+|.+ +|+|.||+..
T Consensus 239 ~lEaSGgI~~~ni~~yA~-tGVD~IS~ga 266 (281)
T PRK06543 239 IVEASGNVSLNTVPAIAS-TGVDVISVGA 266 (281)
T ss_pred EEEEECCCCHHHHHHHHH-CCCCEEECCH
T ss_conf 999988999999999997-3999998382
No 175
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=68.83 E-value=3.9 Score=21.85 Aligned_cols=114 Identities=16% Similarity=0.278 Sum_probs=61.4
Q ss_pred HCCCCEEEE-CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCC--CCCCEEECCCCCCH
Q ss_conf 549816784-383110068356777612722689999863088623602431100001342014--78722304677998
Q gi|254780812|r 197 HAGVDVIQI-FDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRL--TDSNAIGLDWSVPL 273 (346)
Q Consensus 197 ~aGad~iqI-FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~--~g~d~isiD~~~dl 273 (346)
+.|+|++.+ |-+.-|.-... .... .-.+++++++..+++|+..|. |++.--+++.+. .|+.=+.++....+
T Consensus 164 eTgvD~LAvaiGt~HG~Y~~~-~~~L----~~d~l~~I~~~v~~vPLVLHG-gSG~~~e~i~~ai~~Gi~KvNi~Tdl~~ 237 (293)
T PRK07315 164 ETGIDFLAAGIGNIHGPYPEN-WEGL----DLDHLEKLTEAVPGFPIVLHG-GSGIPDDQIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred HCCCCEEEHHHCCCCCCCCCC-CCCC----CHHHHHHHHHCCCCCCEEEEC-CCCCCHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 706643401204524553899-9876----899999998517998579758-9999999999999819558874619899
Q ss_pred HHH---HHHCC---C----EEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 999---97079---8----4696888846770-998899999999999732599
Q gi|254780812|r 274 SFA---LELQK---E----GPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 274 ~~a---~~~~~---~----~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~ 316 (346)
.+. |+... + ..--+.+||..++ ...+.+++.+++-++.++..+
T Consensus 238 a~~~~~r~~l~~~~~~~~~~~~k~~~Dpr~~~~~~~~a~~~~v~~ki~lfGS~g 291 (293)
T PRK07315 238 AFANATRKFAREYEANEAEYDKKKLFDPRKFLAPGFKAIQAAVEERIDVFGSAN 291 (293)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999971566433346777668589999999999999999999968898
No 176
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=68.12 E-value=7.3 Score=19.94 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 23787778764210245320111
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIG 142 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIG 142 (346)
+..+.+.++..+++.. .+|+|.
T Consensus 76 ~~~~~~~l~~~~~~~~-~~~vi~ 97 (308)
T PRK02506 76 FDYYLDYVLDLQKTGP-HKPHFL 97 (308)
T ss_pred HHHHHHHHHHHHHHCC-CCCEEE
T ss_conf 8999998899996279-997588
No 177
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=68.11 E-value=7.7 Score=19.79 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=9.4
Q ss_pred HHHHHHHHHCCCCEEECCCCCC
Q ss_conf 8999986308862360243110
Q gi|254780812|r 228 RIISAVRRKYPNAKFISFAKGA 249 (346)
Q Consensus 228 kI~~~ik~~~~~vpiI~f~~g~ 249 (346)
+.++.+|+++ ++|+|.|+.+.
T Consensus 60 ~~v~~ik~~~-~lPvilfP~~~ 80 (240)
T COG1646 60 NVVEAIKERT-DLPVILFPGSP 80 (240)
T ss_pred HHHHHHHHHC-CCCEEEECCCH
T ss_conf 9999997506-99889935881
No 178
>pfam01180 DHO_dh Dihydroorotate dehydrogenase.
Probab=68.11 E-value=7.9 Score=19.69 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 23787778764210245320111
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIG 142 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIG 142 (346)
++.+.+.++..+++.+.++|+|-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~vi~ 98 (290)
T pfam01180 76 LDAVLEELLKRRKEYPRPLGIIL 98 (290)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 79999999987775388853786
No 179
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=68.10 E-value=10 Score=18.85 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9999999999977777549816784
Q gi|254780812|r 181 LDFLSDVSAEYLIAQIHAGVDVIQI 205 (346)
Q Consensus 181 l~~lt~~~~~yl~~Qi~aGad~iqI 205 (346)
.+.=.+.+.+-++.|+++||+++-+
T Consensus 21 ~~~d~~~i~~~A~~Q~~~GA~~LDV 45 (252)
T cd00740 21 KAEDYDEALDVARQQVEGGAQILDL 45 (252)
T ss_pred HCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8579899999999999849988995
No 180
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=66.81 E-value=11 Score=18.67 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=10.5
Q ss_pred HHCCCCEEEECCCCHHHCCHHHHHHH
Q ss_conf 75498167843831100683567776
Q gi|254780812|r 196 IHAGVDVIQIFDTHAGCLGEHEFENY 221 (346)
Q Consensus 196 i~aGad~iqIFDs~ag~Ls~~~f~~f 221 (346)
+++|+++||+-+.. ++.+.|.+.
T Consensus 30 l~~Gv~~vQlR~K~---~~~~~~~~~ 52 (210)
T PRK00043 30 LAGGVTLVQLREKG---ADARERLEL 52 (210)
T ss_pred HHCCCCEEEECCCC---CCHHHHHHH
T ss_conf 98699999992699---899999999
No 181
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=66.75 E-value=10 Score=18.89 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHCCCCEE--EECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC--CCCCCCCCHHHHHCCCCC
Q ss_conf 99999777775498167--84383110068356777612722689999863088623602--431100001342014787
Q gi|254780812|r 187 VSAEYLIAQIHAGVDVI--QIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFIS--FAKGAGYMLKNYRRLTDS 262 (346)
Q Consensus 187 ~~~~yl~~Qi~aGad~i--qIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~--f~~g~~~~l~~~~~~~g~ 262 (346)
.=++|++.-++||||-+ |+| ...+.|.+| ++.+++.+.++|||- .+=.+-..+..|.+.+|+
T Consensus 164 ~Di~~Lk~KvdaGAdf~ITQ~F------FD~e~f~~f--------~d~~~~~GI~vPIiPGImPi~~~~~~~r~~~~~g~ 229 (296)
T PRK09432 164 ADLINLKRKVDAGANRAITQFF------FDVESYLRF--------RDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNV 229 (296)
T ss_pred HHHHHHHHHHHCCCCEEEEEHE------ECHHHHHHH--------HHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHCC
T ss_conf 8999999999746664630020------049999999--------99999859997401230102578999999998199
Q ss_pred CEEECCCCCCHHHHHHHCCCEEEECCCCHHHHC-CCHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 223046779989999707984696888846770-998899999999999732599289608
Q gi|254780812|r 263 NAIGLDWSVPLSFALELQKEGPVQGNLDPMRLV-VGNQVMIDGVNAILDVLGSGPFIFNLG 322 (346)
Q Consensus 263 d~isiD~~~dl~~a~~~~~~~~lqGNldP~~L~-~~~e~i~~~~~~~l~~~~~~~~I~nLG 322 (346)
.+ + .+..+..... .=||..+. .+-+-..+-++++++.+.++=|+..+.
T Consensus 230 ~i-------P-~~l~~~le~~----~~d~e~~~~~Gi~~a~~q~~~L~~~Gv~glHfYTlN 278 (296)
T PRK09432 230 RI-------P-SWMAKMFDGL----DDDAETRKLVGASIAMDMVKILSREGVKDFHFYTLN 278 (296)
T ss_pred CC-------H-HHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 88-------6-9999998601----899999999999999999999997799955993289
No 182
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=66.35 E-value=11 Score=18.72 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=43.0
Q ss_pred HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHH------CCCCCCEE
Q ss_conf 777775498167843831100683567776127226899998630886236024311000013420------14787223
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYR------RLTDSNAI 265 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~------~~~g~d~i 265 (346)
+.+-.+.++|+|.+ +.+++. ..++++++++.+++.+.++|++ ++|. ..-+.+. +..|+|+.
T Consensus 132 v~~~~~~~~divgl----SallTt------Tm~~mk~vi~~l~~~g~~vkv~--vGGa-~vt~~fa~~~~~~~y~Gad~y 198 (213)
T cd02069 132 LEAAKEHKADIIGL----SGLLVP------SLDEMVEVAEEMNRRGIKIPLL--IGGA-ATSRKHTAVKIAPEYDGPVVY 198 (213)
T ss_pred HHHHHHCCCCEEEE----ECCCCC------CHHHHHHHHHHHHHCCCCEEEE--ECCC-CCCHHHHHHHHHHCCCCCCEE
T ss_conf 99999749999998----323030------4999999999999749981799--7163-278889987641036798078
Q ss_pred ECCCCCCHHHH
Q ss_conf 04677998999
Q gi|254780812|r 266 GLDWSVPLSFA 276 (346)
Q Consensus 266 siD~~~dl~~a 276 (346)
+-|-..-.+.+
T Consensus 199 ~~dA~~aV~~~ 209 (213)
T cd02069 199 VKDASRALGVA 209 (213)
T ss_pred ECCHHHHHHHH
T ss_conf 43999999999
No 183
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=66.30 E-value=11 Score=18.61 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=28.6
Q ss_pred HHHHHHCCCCEEEECCCCH----HHCCH------HHHH---HHHCCCHHHHHHHHHHHCC-CCEEE
Q ss_conf 7777754981678438311----00683------5677---7612722689999863088-62360
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHA----GCLGE------HEFE---NYAARSVGRIISAVRRKYP-NAKFI 243 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~a----g~Ls~------~~f~---~f~~p~~kkI~~~ik~~~~-~vpiI 243 (346)
++.-+++|-|+|-|--..+ +.||| +.|- +-=..+..++++++++..| +.|+.
T Consensus 562 A~rA~~AGFD~IEiH~AHGYLl~qFLSPlsN~RtDeYGGsleNR~Rf~lEV~~aVR~~~p~~~Pl~ 627 (770)
T PRK08255 562 TRRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPADKPMS 627 (770)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 999998399989995234555887538644677543578888777889999999998678988669
No 184
>pfam07745 Glyco_hydro_53 Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.
Probab=66.16 E-value=11 Score=18.59 Aligned_cols=177 Identities=23% Similarity=0.258 Sum_probs=89.1
Q ss_pred CCEECCHHHCCCEEEECCCCCCCCCCCCHHH-----HHC----CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 3200104324433731688752223333355-----420----5670123443237877787642102453201111479
Q gi|254780812|r 76 DILVIADALGRNVRFVENEGPRMDPITTQEI-----YLL----NPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGA 146 (346)
Q Consensus 76 DIl~~~ealG~~v~f~~~~GP~~~p~~~~~~-----~~~----~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~Gg 146 (346)
||-..++---+++.|....|-..+++..-+. .++ +|. +.....+..|.+..+..|+. +-+-++-|-=+
T Consensus 5 DiS~~~~~E~~G~~y~d~~G~~~d~~~iLk~~GvN~vRlRvWvnP~-~~g~~dl~~v~~~akrak~~--GmkvlLdfHYS 81 (332)
T pfam07745 5 DISSLNELENAGVSYKNENGQTQDLFTILKDAGVNSIRLRVWVNPY-DTGNNDLDDVIEIAKRAKAA--GMKVLLDFHYS 81 (332)
T ss_pred CCHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCEEEEEEEECCC-CCCCCCHHHHHHHHHHHHHC--CCEEEEEEECC
T ss_conf 1046999997698689999988689999997698869999865788-77768999999999999987--99399986313
Q ss_pred H-HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEC-CCCHHHCC----HHHH
Q ss_conf 9-99999961246776524677530137222899999999999999777775498--167843-83110068----3567
Q gi|254780812|r 147 P-WTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGV--DVIQIF-DTHAGCLG----EHEF 218 (346)
Q Consensus 147 P-~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGa--d~iqIF-Ds~ag~Ls----~~~f 218 (346)
= |+= +.+. .+-+.|-- ..+.+|-+.+-+.+.+-+...-++|+ |.|||- |...|+|- ...|
T Consensus 82 D~WAD--------Pg~Q-~~P~aW~~---~~~~~L~~~vy~yT~~vl~~lk~~Gv~pd~VQVGNEin~GmLwp~g~~~~~ 149 (332)
T pfam07745 82 DTWAD--------PGKQ-TKPKAWAS---LDFEQLKKALYNYTKDVLNALKEAGITPDMVQVGNEITSGMLWPEGKTPNW 149 (332)
T ss_pred CCCCC--------CCCC-CCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCH
T ss_conf 55468--------5557-68633345---999999999999999999999986999644786413556644768897789
Q ss_pred HHHHCCCHHHHHHHHHHHCCCCEEE-CCCCCCC-C----CHHHHHC-CCCCCEEECC
Q ss_conf 7761272268999986308862360-2431100-0----0134201-4787223046
Q gi|254780812|r 219 ENYAARSVGRIISAVRRKYPNAKFI-SFAKGAG-Y----MLKNYRR-LTDSNAIGLD 268 (346)
Q Consensus 219 ~~f~~p~~kkI~~~ik~~~~~vpiI-~f~~g~~-~----~l~~~~~-~~g~d~isiD 268 (346)
..|+ ..++.=++++|+..|+++|+ |+..+.. . .+..+.. -...|+|++.
T Consensus 150 ~~~a-~ll~ag~~AVr~~~~~~ki~lHl~~~~~~~~~~~~fd~l~~~gvd~DviG~S 205 (332)
T pfam07745 150 ENLA-KLLNSGYWAVKDVNPTIKVMIHLDNGEDNGTYRWWFDNLLAAGVDFDVIGVS 205 (332)
T ss_pred HHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 9999-9999999999853999739999589877588999999999759980267656
No 185
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=65.86 E-value=12 Score=18.55 Aligned_cols=90 Identities=9% Similarity=0.052 Sum_probs=44.8
Q ss_pred HCCCHHHHHHHHHHHHH------------------HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHH
Q ss_conf 01372228999999999------------------999997777754981678438311006835677761272268999
Q gi|254780812|r 170 AYQNSRAFNWLLDFLSD------------------VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIIS 231 (346)
Q Consensus 170 ~~~~p~~~~~ll~~lt~------------------~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~ 231 (346)
|.++|+.+.++++.+.+ .+.++++.--++||+.+.|-==.+.+ .|.-|..-+.+.
T Consensus 104 Ll~~p~~v~~iv~~~~~~~~ipVsvKiRlg~~~~~~~~~~~~~l~~~G~~~ltvH~Rt~~q-------~~~~~a~~e~i~ 176 (231)
T cd02801 104 LLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQ-------RYSGPADWDYIA 176 (231)
T ss_pred HHHCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHH-------CCCCCCCHHHHH
T ss_conf 7629789999999999756994799997077863479999999997699899983561441-------467762269999
Q ss_pred HHHHHCCCCEEECCCCCCC--CCHHHHHCCCCCCEEECC
Q ss_conf 9863088623602431100--001342014787223046
Q gi|254780812|r 232 AVRRKYPNAKFISFAKGAG--YMLKNYRRLTDSNAIGLD 268 (346)
Q Consensus 232 ~ik~~~~~vpiI~f~~g~~--~~l~~~~~~~g~d~isiD 268 (346)
.+++ .+++|+|. .+|.. ....++.+.+|+|.+.+.
T Consensus 177 ~~~~-~~~ipvi~-NGdI~s~~d~~~~~~~tg~dgvMig 213 (231)
T cd02801 177 EIKE-AVSIPVIA-NGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHH-CCCCEEEE-ECCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 9986-59977998-3890999999999985099999987
No 186
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.73 E-value=12 Score=18.53 Aligned_cols=46 Identities=28% Similarity=0.299 Sum_probs=23.2
Q ss_pred HHHHHHCCCCEEEECCCCHHH----CCHH------HH---HHHHCCCHHHHHHHHHHHC
Q ss_conf 777775498167843831100----6835------67---7761272268999986308
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGC----LGEH------EF---ENYAARSVGRIISAVRRKY 237 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~----Ls~~------~f---~~f~~p~~kkI~~~ik~~~ 237 (346)
++.-.+||.|.|+|-=..+-+ |||. .| -+-=..+..+|++++++..
T Consensus 147 A~~A~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtD~YGGs~eNR~Rf~~eii~air~~v 205 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAV 205 (327)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99999849998998357661888721754698777788898999899999999999973
No 187
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=65.42 E-value=12 Score=18.49 Aligned_cols=92 Identities=27% Similarity=0.376 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC--EEEEC-CCCHHHC---CHH-HHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCC
Q ss_conf 8999999999999997777754981--67843-8311006---835-67776127226899998630886236-024311
Q gi|254780812|r 177 FNWLLDFLSDVSAEYLIAQIHAGVD--VIQIF-DTHAGCL---GEH-EFENYAARSVGRIISAVRRKYPNAKF-ISFAKG 248 (346)
Q Consensus 177 ~~~ll~~lt~~~~~yl~~Qi~aGad--~iqIF-Ds~ag~L---s~~-~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g 248 (346)
++++-..+-+.+..-+..+.+.|++ .||+- ++..|.| ... .|++++. -+++-+.++|+-.|++++ |||+-|
T Consensus 147 fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~-L~n~g~~avrev~p~ikv~lHla~g 225 (403)
T COG3867 147 FEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAA-LLNAGIRAVREVSPTIKVALHLAEG 225 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCCCHHHHHH-HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 999999999999999999997489945167545467713246788767689999-9997765653248971699993478
Q ss_pred CCC-CHHHHH-----CCCCCCEEECCC
Q ss_conf 000-013420-----147872230467
Q gi|254780812|r 249 AGY-MLKNYR-----RLTDSNAIGLDW 269 (346)
Q Consensus 249 ~~~-~l~~~~-----~~~g~d~isiD~ 269 (346)
.+. .+.-+. .....|+|++.+
T Consensus 226 ~~n~~y~~~fd~ltk~nvdfDVig~Sy 252 (403)
T COG3867 226 ENNSLYRWIFDELTKRNVDFDVIGSSY 252 (403)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 887523588878877389840776312
No 188
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.85 E-value=9.4 Score=19.15 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEE----CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHC-CCCEEECCCCCCCCCH
Q ss_conf 999999977777549816784----38311006835677761272268999986308-8623602431100001
Q gi|254780812|r 185 SDVSAEYLIAQIHAGVDVIQI----FDTHAGCLGEHEFENYAARSVGRIISAVRRKY-PNAKFISFAKGAGYML 253 (346)
Q Consensus 185 t~~~~~yl~~Qi~aGad~iqI----FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~-~~vpiI~f~~g~~~~l 253 (346)
|+...+|++.+. +.||++.| ||.|-|--.+.+ -.++++..++... .|+++.++.++-...+
T Consensus 16 t~~fl~Fl~~~a-~~ad~lyilGDifd~w~g~~~~~~-------~~~~V~~~l~~~a~~G~~v~~i~GN~Dfll 81 (237)
T COG2908 16 TAFFLDFLREEA-AQADALYILGDIFDGWIGDDEPPQ-------LHRQVAQKLLRLARKGTRVYYIHGNHDFLL 81 (237)
T ss_pred HHHHHHHHHHCC-CCCCEEEEECHHHHHHHCCCCCCH-------HHHHHHHHHHHHHHCCCEEEEECCCHHHHH
T ss_conf 999999998353-567579995001666626876038-------999999999999865984799447618888
No 189
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=63.96 E-value=12 Score=18.31 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=20.6
Q ss_pred CCCEEEE---CCCCCC-CCCHHHHHHHHHHHHHCC
Q ss_conf 9928960---897633-668899999999997306
Q gi|254780812|r 315 GPFIFNL---GHGITP-QVDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 315 ~~~I~nL---GhGi~p-~tp~eNv~~~v~~vr~~~ 345 (346)
.|+|..+ -+|+.. ..+++.++.|++++|.-+
T Consensus 227 dG~IvgT~lK~~G~~~n~VD~~Rv~~~v~~a~~~~ 261 (263)
T COG0434 227 DGVIVGTSLKKGGVTWNPVDLERVRRFVEAARRLR 261 (263)
T ss_pred CCEEEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf 86699786603886368459999999999998753
No 190
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=63.75 E-value=13 Score=18.28 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf 9999999777775498167843831100683567776127226899998630886236024
Q gi|254780812|r 185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF 245 (346)
Q Consensus 185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f 245 (346)
|.-+++.++.-.++|||++++.-|.-.-.+.+. ...|.++|.++ .|+.|+++|
T Consensus 89 t~~ai~~a~~a~~~Gad~~lv~~P~y~~~~~~~----l~~~~~~ia~a----~~~lPiilY 141 (309)
T cd00952 89 TRDTIARTRALLDLGADGTMLGRPMWLPLDVDT----AVQFYRDVAEA----VPEMAIAIY 141 (309)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHH----CCCCCEEEE
T ss_conf 999999999998469899998888588999999----99999999986----789988999
No 191
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=63.57 E-value=13 Score=18.26 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=34.5
Q ss_pred HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 99997777754981678438311006835677761272268999986308862360243110
Q gi|254780812|r 188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA 249 (346)
Q Consensus 188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~ 249 (346)
+.++++.-.++|||.|.+-|| .|.+.|.++.++ ++.+++.. ++|+-.||.+.
T Consensus 147 l~~~~~~a~~~Gad~I~l~DT-~G~~~P~~v~~~--------v~~l~~~~-~~~i~~H~HNd 198 (378)
T PRK11858 147 LIEAAKAAEEAGADRVRFCDT-VGILDPFTMYEL--------VKELVEAV-DIPIEVHCHND 198 (378)
T ss_pred HHHHHHHHHHCCCCEEEECCC-CCCCCHHHHHHH--------HHHHHHHC-CCCEEEEEECC
T ss_conf 999999999749989996365-566699999999--------99999726-98559997077
No 192
>TIGR00502 nagB glucosamine-6-phosphate isomerase; InterPro: IPR004547 Glucosamine-6-phosphate isomerase (3.5.99.6 from EC) catalyses the conversion of D-glucosamine 6-phosphate and water to D-fructose 6-phosphate in the N-acetylglucosamine utilization pathway. The enzyme was formerly classified as EC 5.3.1.10. This family also includes a closely related pair of proteins from Bacillus subtilis, one of which is uncharacterised but included as a member of the orthologous set.; GO: 0004342 glucosamine-6-phosphate deaminase activity, 0006044 N-acetylglucosamine metabolic process.
Probab=63.49 E-value=13 Score=18.25 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=49.8
Q ss_pred HHHHH--HHHHHHHHHHHCCCC--CCCHHHHHHH--------HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 11114--799999999612467--7652467753--------01372228999999999999997777754981678438
Q gi|254780812|r 140 LIGFC--GAPWTVASYMISGGF--IKDHGQNRVF--------AYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFD 207 (346)
Q Consensus 140 LIGF~--GgP~TlasYmieG~~--sk~~~~~~~~--------~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFD 207 (346)
++|-+ |.|.+++--||+--- .=+|.++..+ -.++|+..|-.|- +-.-+|++. -.+=+.|-.
T Consensus 36 VLGLpTGgTP~g~Yk~LI~l~qa~~~sF~~v~TfNlDEY~GL~~~hP~SYh~FM~---~~fF~HId~----~~~~i~Iln 108 (260)
T TIGR00502 36 VLGLPTGGTPVGTYKQLIRLYQAGKISFQNVVTFNLDEYVGLSEEHPESYHSFMH---NNFFQHIDI----KPENINILN 108 (260)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHH---HHCCCCCCC----CCCCCCCCC
T ss_conf 6106888875789999999850487432410553141001587888852137866---512354477----734455888
Q ss_pred CCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCC-HHHHHCCCCC
Q ss_conf 311006835677761272268999986308862360243110000-1342014787
Q gi|254780812|r 208 THAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYM-LKNYRRLTDS 262 (346)
Q Consensus 208 s~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~-l~~~~~~~g~ 262 (346)
=.|..|.. =|..|-++|-+ . | .+-.|-.|.+.. -..+.+ .|.
T Consensus 109 Gna~dl~a-----eCr~YE~~i~s----~--G-~i~lf~gGiG~dGHIaFNE-PgS 151 (260)
T TIGR00502 109 GNADDLEA-----ECRRYEEKIKS----Y--G-GIDLFLGGIGADGHIAFNE-PGS 151 (260)
T ss_pred CCCHHHHH-----HHHHHHHHHHH----H--C-CEEEEEEEECCCCCEEECC-CCC
T ss_conf 68655788-----99899999985----1--8-8178973024888632168-888
No 193
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=63.09 E-value=12 Score=18.48 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=6.2
Q ss_pred HHHHHHHCCCCEE
Q ss_conf 9777775498167
Q gi|254780812|r 191 YLIAQIHAGVDVI 203 (346)
Q Consensus 191 yl~~Qi~aGad~i 203 (346)
-+.+.+++|||+|
T Consensus 246 Ra~~Lv~aGvD~l 258 (497)
T PRK07107 246 RVPALVEAGADVL 258 (497)
T ss_pred HHHHHHHCCCCEE
T ss_conf 9999998599999
No 194
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=62.93 E-value=11 Score=18.70 Aligned_cols=34 Identities=26% Similarity=0.229 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHH
Q ss_conf 99999997777754981678438311006835677761
Q gi|254780812|r 185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYA 222 (346)
Q Consensus 185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~ 222 (346)
.+-.|+=+++.++||||+|.. -++-++++|++|+
T Consensus 165 ld~AI~Ra~AY~eAGAD~if~----~al~~~e~i~~f~ 198 (289)
T COG2513 165 LDDAIERAQAYVEAGADAIFP----EALTDLEEIRAFA 198 (289)
T ss_pred HHHHHHHHHHHHHCCCCEECC----CCCCCHHHHHHHH
T ss_conf 799999999999759768713----6679999999999
No 195
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=62.80 E-value=6.1 Score=20.46 Aligned_cols=127 Identities=14% Similarity=0.278 Sum_probs=67.7
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCC-----CHHHHHHHHHHHCCCCE
Q ss_conf 530137222899999999999999777775498167843-831100683567776127-----22689999863088623
Q gi|254780812|r 168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAAR-----SVGRIISAVRRKYPNAK 241 (346)
Q Consensus 168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p-----~~kkI~~~ik~~~~~vp 241 (346)
.-+|.+|+.+.++.+ +.|+|.+.+. -+.-|. |. +..+ ..-+++++++++.|++|
T Consensus 169 ~~~yT~Peea~~Fv~--------------~TgvD~LAvaiGt~HG~-----YK-~~~~p~~~~l~~~~L~~i~~~~~~~p 228 (347)
T PRK13399 169 DQMLTDPDQAVDFVQ--------------RTGVDALAIAIGTSHGA-----YK-FTRKPDGDILAIDRIEEIHARLPNTH 228 (347)
T ss_pred HHHCCCHHHHHHHHH--------------HHCCCEEEEEECCCCCC-----CC-CCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 332489999999999--------------86898586440534478-----77-88899855237999999997378987
Q ss_pred EECCCCCC--------------------CCCHHHHHCC--CCCCEEECCCCCCHHHH---HHHCCCEEEECCCCHHHHC-
Q ss_conf 60243110--------------------0001342014--78722304677998999---9707984696888846770-
Q gi|254780812|r 242 FISFAKGA--------------------GYMLKNYRRL--TDSNAIGLDWSVPLSFA---LELQKEGPVQGNLDPMRLV- 295 (346)
Q Consensus 242 iI~f~~g~--------------------~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~~~~~~~lqGNldP~~L~- 295 (346)
+..+.+.. +.-.+++.+. .|+.=+.+|......+. |+...+- -+.+||..++
T Consensus 229 LVLHGgS~vp~~~~~~~~~~GG~~~~~~G~~~e~i~~AI~~GV~KiNi~Tdl~~A~~~~vr~~l~~~--p~~~Dpr~~l~ 306 (347)
T PRK13399 229 LVMHGSSSVPQELQEIINAYGGDMKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEH--PSEFDPRKALK 306 (347)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHC--CCCCCCHHHHH
T ss_conf 6874797884788899997077666788999999999998197799858377899999999999859--77689089999
Q ss_pred CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 998899999999999732599
Q gi|254780812|r 296 VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 296 ~~~e~i~~~~~~~l~~~~~~~ 316 (346)
...+.+.+.++..++.++..|
T Consensus 307 ~~~~am~~~v~~ki~~fGS~g 327 (347)
T PRK13399 307 PAMKAMTSLCKQRFEAFGTAG 327 (347)
T ss_pred HHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999849977
No 196
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=62.06 E-value=13 Score=18.08 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=7.4
Q ss_pred HHHHHHHHHCCCCEEEE
Q ss_conf 99977777549816784
Q gi|254780812|r 189 AEYLIAQIHAGVDVIQI 205 (346)
Q Consensus 189 ~~yl~~Qi~aGad~iqI 205 (346)
++.+..+++.|||+|-|
T Consensus 41 ~~~a~~mi~~GAdiIDI 57 (282)
T PRK11613 41 VKHANLMINAGATIIDV 57 (282)
T ss_pred HHHHHHHHHCCCCEEEE
T ss_conf 99999999889969997
No 197
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=61.93 E-value=14 Score=18.06 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=10.3
Q ss_pred CCCCEECCHHHCCCEEEECCCCCC
Q ss_conf 133200104324433731688752
Q gi|254780812|r 74 FSDILVIADALGRNVRFVENEGPR 97 (346)
Q Consensus 74 FsDIl~~~ealG~~v~f~~~~GP~ 97 (346)
|-+++..+.-+|+.+-. +.-|.
T Consensus 51 ~~ell~~Anklg~~viv--DvnPs 72 (360)
T COG3589 51 FKELLKEANKLGLRVIV--DVNPS 72 (360)
T ss_pred HHHHHHHHHHCCCEEEE--ECCHH
T ss_conf 99999999865968999--74877
No 198
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=61.55 E-value=14 Score=18.02 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=7.5
Q ss_pred CCCCEEECCC-CCCHHHHHH
Q ss_conf 7872230467-799899997
Q gi|254780812|r 260 TDSNAIGLDW-SVPLSFALE 278 (346)
Q Consensus 260 ~g~d~isiD~-~~dl~~a~~ 278 (346)
.|+|++++.+ ..++..+|+
T Consensus 86 ~gADGVHlGq~d~~~~~aR~ 105 (221)
T PRK06512 86 VKADGLHIEGNAAALAEAIE 105 (221)
T ss_pred CCCCEEEECCCCCCHHHHHH
T ss_conf 09986652687531999999
No 199
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=61.14 E-value=14 Score=17.97 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 23787778764210245320111147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG 199 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG 199 (346)
+..+++-++..+++. .++|+|..+++. ..+.+.++.+.+. ++|
T Consensus 82 ~~~~~~~l~~~~~~~-~~~pli~Si~~~-------------------------~~~~~~~~a~~~~-----------~~g 124 (289)
T cd02810 82 LDVWLQDIAKAKKEF-PGQPLIASVGGS-------------------------SKEDYVELARKIE-----------RAG 124 (289)
T ss_pred HHHHHHHHHHHHHCC-CCCEEEEECCCC-------------------------CHHHHHHHHHHHH-----------HHC
T ss_conf 899999999998617-995399978889-------------------------8789999999999-----------847
Q ss_pred CCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC---C-CCHHHHH---CCCCCCEEECCCCC
Q ss_conf 81678438311006835677761272268999986308862360243110---0-0013420---14787223046779
Q gi|254780812|r 200 VDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA---G-YMLKNYR---RLTDSNAIGLDWSV 271 (346)
Q Consensus 200 ad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~---~-~~l~~~~---~~~g~d~isiD~~~ 271 (346)
||++-+-=|.-+.-....+. .....+.+|++.+++.. ++|++. |=+ + ..+..+. ...|+|++.+-++.
T Consensus 125 ad~lElNiScPn~~~~~~~~-~~~~~~~~i~~~v~~~~-~~Pv~v--KLsp~~~~~~~~~ia~~~~~~ga~gv~~~Nt~ 199 (289)
T cd02810 125 AKALELNLSCPNVGGGRQLG-QDPEAVANLLKAVKAAV-DIPLLV--KLSPYFDLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred CCEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHCC-CCCEEE--ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98489984036756553201-49999999999998602-687488--42788761689999999997599689996787
No 200
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=61.11 E-value=14 Score=17.96 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHCCCCE-EEECCC
Q ss_conf 99999977777549816-784383
Q gi|254780812|r 186 DVSAEYLIAQIHAGVDV-IQIFDT 208 (346)
Q Consensus 186 ~~~~~yl~~Qi~aGad~-iqIFDs 208 (346)
+.+.+++....+.|+-. +-+||+
T Consensus 128 ~~~~~~~~~~~~~gi~pe~e~yd~ 151 (274)
T pfam05853 128 ADVEEFAARMQEAGVKPEFECFDV 151 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECH
T ss_conf 999999999998599149999779
No 201
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=59.75 E-value=15 Score=17.81 Aligned_cols=22 Identities=5% Similarity=0.063 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 378777876421024532011114
Q gi|254780812|r 121 LPIFQSISILRKKLPNHITLIGFC 144 (346)
Q Consensus 121 ~~v~eAi~~~k~~l~~~~pLIGF~ 144 (346)
..+.+-++..+++. ++|+|..+
T Consensus 75 ~~~~~~l~~~~~~~--~~pvi~si 96 (296)
T cd04740 75 EAFLEELLPWLREF--GTPVIASI 96 (296)
T ss_pred HHHHHHHHHHHCCC--CCEEEEEE
T ss_conf 89998789863568--97189981
No 202
>KOG2918 consensus
Probab=59.72 E-value=9.7 Score=19.06 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHCCCCEE
Q ss_conf 7226899998630886236
Q gi|254780812|r 224 RSVGRIISAVRRKYPNAKF 242 (346)
Q Consensus 224 p~~kkI~~~ik~~~~~vpi 242 (346)
++-+-.++.+|.+ |+|.
T Consensus 233 ~Fg~vM~~nlk~r--~~~L 249 (335)
T KOG2918 233 RFGKVMLANLKRR--GCPL 249 (335)
T ss_pred HHHHHHHHHHHHC--CCCC
T ss_conf 3899999988854--9977
No 203
>KOG2335 consensus
Probab=59.20 E-value=15 Score=17.74 Aligned_cols=122 Identities=20% Similarity=0.327 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH---------------
Q ss_conf 37877787642102453201111479999999961246776524677530137222899999999---------------
Q gi|254780812|r 121 LPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLS--------------- 185 (346)
Q Consensus 121 ~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt--------------- 185 (346)
....+|.+++-.- .+.+-| -||.|=+.|- ...|- .+|..+|+++++++..+.
T Consensus 86 ~~ll~Aa~lv~~y-~D~idl--NcGCPq~~a~-------~g~yG---a~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~ 152 (358)
T KOG2335 86 ENLLKAARLVQPY-CDGIDL--NCGCPQKVAK-------RGGYG---AFLMDNPELVGEMVSAVRANLNVPVSVKIRIFV 152 (358)
T ss_pred HHHHHHHHHHHHH-CCCCCC--CCCCCHHHHH-------CCCCC---CEECCCHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 9999999986533-472041--5899878884-------37726---000238899999999998525998699998557
Q ss_pred --HHHHHHHHHHHHCCCCEEEECCCCH---HH-CCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC--CCHHHHH
Q ss_conf --9999997777754981678438311---00-68356777612722689999863088623602431100--0013420
Q gi|254780812|r 186 --DVSAEYLIAQIHAGVDVIQIFDTHA---GC-LGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG--YMLKNYR 257 (346)
Q Consensus 186 --~~~~~yl~~Qi~aGad~iqIFDs~a---g~-Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~--~~l~~~~ 257 (346)
+-+++|+++--+||++.+.|---.+ |. ..|-+|+ -+.++++..+++|+|.- +|+. .......
T Consensus 153 d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~---------~i~~v~~~~~~ipviaN-GnI~~~~d~~~~~ 222 (358)
T KOG2335 153 DLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWE---------AIKAVRENVPDIPVIAN-GNILSLEDVERCL 222 (358)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCCHH---------HHHHHHHHCCCCCEEEE-CCCCCHHHHHHHH
T ss_conf 6787899999998679868999365577628888876779---------99999974767708950-8857689999999
Q ss_pred CCCCCCEE
Q ss_conf 14787223
Q gi|254780812|r 258 RLTDSNAI 265 (346)
Q Consensus 258 ~~~g~d~i 265 (346)
+.||+|++
T Consensus 223 ~~tG~dGV 230 (358)
T KOG2335 223 KYTGADGV 230 (358)
T ss_pred HHHCCCEE
T ss_conf 97587468
No 204
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=58.99 E-value=12 Score=18.39 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=53.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH---HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf 778764210245320111147999---9999961246776524677530137222899999999999999777775498-
Q gi|254780812|r 125 QSISILRKKLPNHITLIGFCGAPW---TVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGV- 200 (346)
Q Consensus 125 eAi~~~k~~l~~~~pLIGF~GgP~---TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGa- 200 (346)
+.++..|++.| +.+++-.+-+-- ..+-+.+ .|.|-.+...++ .+- .+++=.=-..+..|+..| .|.
T Consensus 112 ~~~~~~~~~~P-~~~vV~YvNtsA~vKA~~Di~c---TSsNAvkvVe~~-~~~---~~Iif~PD~~Lg~yva~~--tg~k 181 (324)
T COG0379 112 EEVRAFKEKHP-DAPVVTYVNTSAEVKAEADICC---TSSNAVKVVESA-LDG---DKILFLPDKNLGRYVAKQ--TGAK 181 (324)
T ss_pred HHHHHHHHHCC-CCCEEEEEECHHHHHHHCCEEE---ECCCHHHHHHHC-CCC---CCEEECCCHHHHHHHHHH--CCCC
T ss_conf 99999999788-9856999618198886559389---463099999721-579---838983707799999997--5998
Q ss_pred CEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 16784383110068356777612722689999863088623602431
Q gi|254780812|r 201 DVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 201 d~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
++| .|-|..+..+ .+..+-+..+|++||+..++.||-
T Consensus 182 ~ii----~w~G~C~VH~------~ft~~~i~~~k~~~Pda~vlvHPE 218 (324)
T COG0379 182 KII----LWPGHCIVHE------EFTAEDIEELKEKYPDAEVLVHPE 218 (324)
T ss_pred CEE----EECCCCCHHH------HCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 289----8787410101------108999999998789987997899
No 205
>PRK08904 consensus
Probab=58.58 E-value=15 Score=17.67 Aligned_cols=146 Identities=16% Similarity=0.234 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH--HHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-----
Q ss_conf 32378777876421024532011114799999999--61246776524677530137222899999999999999-----
Q gi|254780812|r 119 YLLPIFQSISILRKKLPNHITLIGFCGAPWTVASY--MISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY----- 191 (346)
Q Consensus 119 ~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasY--mieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y----- 191 (346)
+.+..+++|+.+++++++ + +|| +|.=.|...- .++-| -+|. --|-.-..+++.+.+.-+.|
T Consensus 44 rtp~a~~~i~~l~~~~p~-~-~vG-aGTVl~~e~~~~a~~aG--A~Fi-------VSP~~~~~v~~~a~~~~i~~iPGv~ 111 (207)
T PRK08904 44 RTPVGLDAIRLIAKEVPN-A-IVG-AGTVTNPEQLKAVEDAG--AVFA-------ISPGLHESLAKAGHNSGIPLIPGVA 111 (207)
T ss_pred CCCHHHHHHHHHHHHCCC-C-EEE-EEECCCHHHHHHHHHCC--CCEE-------ECCCCCHHHHHHHHHCCCCEECCCC
T ss_conf 991399999999986898-7-685-53136899999999849--9999-------8489989999999983997657869
Q ss_pred ----HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf ----77777549816784383110068356777612722689999863088623602431100-0013420147872230
Q gi|254780812|r 192 ----LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG-YMLKNYRRLTDSNAIG 266 (346)
Q Consensus 192 ----l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~-~~l~~~~~~~g~d~is 266 (346)
+..-.++|++.+.+|= |+.++...| +++++.-+|+++++- .+|.+ .++.+|.+
T Consensus 112 TpsEi~~A~~~G~~~vK~FP--A~~~GG~~~-----------lkal~~pfp~i~~~p-TGGV~~~N~~~yl~-------- 169 (207)
T PRK08904 112 TPGEIQLALEHGIDTLKLFP--AEVVGGKAM-----------LKALYGPYADVRFCP-TGGISLATAPEYLA-------- 169 (207)
T ss_pred CHHHHHHHHHCCCCEEEECC--CHHCCCHHH-----------HHHHHCCCCCCEEEE-CCCCCHHHHHHHHH--------
T ss_conf 99999999987999899776--222088999-----------998746599980886-58989878999981--------
Q ss_pred CCCCCCHHHHHHHCCCEEEECC-CCHHHH--CCCHHHHHHHHHHHHH
Q ss_conf 4677998999970798469688-884677--0998899999999999
Q gi|254780812|r 267 LDWSVPLSFALELQKEGPVQGN-LDPMRL--VVGNQVMIDGVNAILD 310 (346)
Q Consensus 267 iD~~~dl~~a~~~~~~~~lqGN-ldP~~L--~~~~e~i~~~~~~~l~ 310 (346)
.+.-.++-|. +-|.-+ .+++++|.+.+++.+.
T Consensus 170 ------------~~~v~~vgGS~l~~~~~i~~~d~~~I~~~a~~a~~ 204 (207)
T PRK08904 170 ------------LPNVLCVGGSWLTPKEAVKNKDWDTITRLAKEAAA 204 (207)
T ss_pred ------------CCCEEEEECHHHCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf ------------89849998814389999974899999999999972
No 206
>TIGR01481 ccpA catabolite control protein A; InterPro: IPR006377 Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [e.g. acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription.
Probab=56.85 E-value=3.8 Score=21.95 Aligned_cols=68 Identities=19% Similarity=0.325 Sum_probs=38.2
Q ss_pred CCCEEEECCCCEECCHHHCCCE------EEECCCCCCC-CCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 9872652133200104324433------7316887522-23333355420567012344323787778764210245320
Q gi|254780812|r 67 NFDAAILFSDILVIADALGRNV------RFVENEGPRM-DPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHIT 139 (346)
Q Consensus 67 ~~DaaIlFsDIl~~~ealG~~v------~f~~~~GP~~-~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~p 139 (346)
.+|+ ||| ||-.+ .|...+-|++ .=-. |.....| ....+|.+-.-||+..+-++ +++.
T Consensus 116 QVDG-iIf---------mG~~Ite~~re~F~rs~~PVVLAGt~--D~~~~~p--SVNIDy~~A~kEav~~l~~~--GhK~ 179 (332)
T TIGR01481 116 QVDG-IIF---------MGGEITEKLREEFSRSPVPVVLAGTV--DKENELP--SVNIDYKQATKEAVKELIAK--GHKK 179 (332)
T ss_pred HCCE-EEE---------CCHHHHHHHHHHHHCCCCCEEEECCC--CCCCCCC--CCCCCHHHHHHHHHHHHHHC--CCCE
T ss_conf 1011-344---------43021089999971289988995354--8654677--31016789999999998633--5826
Q ss_pred HHHHHHHHHHHH
Q ss_conf 111147999999
Q gi|254780812|r 140 LIGFCGAPWTVA 151 (346)
Q Consensus 140 LIGF~GgP~Tla 151 (346)
|+|+|||.+=-
T Consensus 180 -iAfv~G~L~~~ 190 (332)
T TIGR01481 180 -IAFVSGSLSDS 190 (332)
T ss_pred -EEEEECCCCCC
T ss_conf -88873675711
No 207
>TIGR00430 Q_tRNA_tgt queuine tRNA-ribosyltransferase; InterPro: IPR004803 The queuine tRNA-ribosyltransferase (tgt) 2.4.2.29 from EC catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The archaea have a closely related enzyme (IPR004804 from INTERPRO) that catalyses a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes. ; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0008616 queuosine biosynthetic process.
Probab=56.62 E-value=16 Score=17.51 Aligned_cols=113 Identities=21% Similarity=0.258 Sum_probs=63.1
Q ss_pred HHHHHHCCCCEEEECCCCHHHCCHHHH----HHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCC-------C
Q ss_conf 777775498167843831100683567----77612722689999863088623602431100001342014-------7
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGCLGEHEF----ENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRL-------T 260 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f----~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~-------~ 260 (346)
+..|-.=|+|+||+||--.+..++-+| -+-+..+.++-+++-+++.-+-.=.+|.==-+..++++.+. .
T Consensus 161 ~~IQ~~LGSDIiM~fDeC~p~~ad~~~~~~s~~rt~rWA~~~l~~~~~~~~G~~~~LFgIvQGg~y~dLR~~S~~~L~~~ 240 (415)
T TIGR00430 161 MEIQYALGSDIIMAFDECTPYPADYDYAEKSTERTLRWAERCLEAHDRRKEGNKQALFGIVQGGTYEDLRSQSAKGLIEL 240 (415)
T ss_pred HHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 99998628977987026887886578999999987999999998620247887775346870730488899999999861
Q ss_pred CC-----CEE-ECCCCC-CHHHHHH----H-CCCEEEECCCCHHHH--CCCHHHHHHHHHHHHHH
Q ss_conf 87-----223-046779-9899997----0-798469688884677--09988999999999997
Q gi|254780812|r 261 DS-----NAI-GLDWSV-PLSFALE----L-QKEGPVQGNLDPMRL--VVGNQVMIDGVNAILDV 311 (346)
Q Consensus 261 g~-----d~i-siD~~~-dl~~a~~----~-~~~~~lqGNldP~~L--~~~~e~i~~~~~~~l~~ 311 (346)
+. -.+ ||...- ++.+..+ + ..+ -|..| .|++|++.+.+.+=+|-
T Consensus 241 df~GYAIGGLisVGEp~~~m~~il~~~~PLlP~d-------KPRYLMGvG~p~~l~~ai~~GiDm 298 (415)
T TIGR00430 241 DFPGYAIGGLISVGEPKDDMLRILEHTAPLLPKD-------KPRYLMGVGTPEDLLDAIRRGIDM 298 (415)
T ss_pred CCCCCEEECEEECCCCHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCHHHHHHHHHHCCCH
T ss_conf 8895045032412588899888998750357776-------884020548889999999816741
No 208
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=56.23 E-value=9.9 Score=19.00 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=14.0
Q ss_pred HHHHHHCCCCEEEECCCCHH
Q ss_conf 77777549816784383110
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAG 211 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag 211 (346)
.-.|=+-++|+|--||+++|
T Consensus 299 plLrP~R~VDvIisfD~S~~ 318 (430)
T cd07202 299 LVLPPVRNTDLILSFDFSEG 318 (430)
T ss_pred CCCCCCCCEEEEEEECCCCC
T ss_conf 35587754018998326778
No 209
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=55.83 E-value=17 Score=17.37 Aligned_cols=48 Identities=13% Similarity=-0.035 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHHCCCC--C--EEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 98899999999999732599--2--896089763366889999999999730
Q gi|254780812|r 297 GNQVMIDGVNAILDVLGSGP--F--IFNLGHGITPQVDPKNVLDLVKTVRSE 344 (346)
Q Consensus 297 ~~e~i~~~~~~~l~~~~~~~--~--I~nLGhGi~p~tp~eNv~~~v~~vr~~ 344 (346)
+.+.+++.++++|+.+...+ - +-.+|+|+.---+.+-.+.++++|++|
T Consensus 86 ~~~~l~~~~~~~L~~A~~~~~~SIAfPaigtG~~g~p~~~~A~~~~~~i~~F 137 (137)
T cd02903 86 ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 6999999999999999986997899905456777889999999999999839
No 210
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=55.61 E-value=17 Score=17.34 Aligned_cols=13 Identities=0% Similarity=0.008 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999997
Q gi|254780812|r 299 QVMIDGVNAILDV 311 (346)
Q Consensus 299 e~i~~~~~~~l~~ 311 (346)
++..+..+++.+.
T Consensus 383 ~~~~~~a~~l~~~ 395 (738)
T PRK09517 383 DEALAQARGFART 395 (738)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999981
No 211
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=55.18 E-value=17 Score=17.30 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=10.8
Q ss_pred EECCCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf 6024311000013420147872230467
Q gi|254780812|r 242 FISFAKGAGYMLKNYRRLTDSNAIGLDW 269 (346)
Q Consensus 242 iI~f~~g~~~~l~~~~~~~g~d~isiD~ 269 (346)
++=..||.+..+..+.+..++++.++|.
T Consensus 17 VLDlGCG~G~ll~~L~~~k~v~~~GvEi 44 (193)
T pfam07021 17 VLDLGCGDGSLLYLLQEEKQVDGRGIEL 44 (193)
T ss_pred EEEECCCCCHHHHHHHHCCCCCEEEECC
T ss_conf 9983688989999998766987698338
No 212
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=55.09 E-value=17 Score=17.29 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=26.1
Q ss_pred HHHHHHCCCCEEEECCCCHH----HCCHHH---HHHHH------CCCHHHHHHHHHHHC-CCCEEE
Q ss_conf 77777549816784383110----068356---77761------272268999986308-862360
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAG----CLGEHE---FENYA------ARSVGRIISAVRRKY-PNAKFI 243 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag----~Ls~~~---f~~f~------~p~~kkI~~~ik~~~-~~vpiI 243 (346)
++.-.+||.|.|+|--..+- .|||.. =++|. ..+..+|++++++.. ++.|+.
T Consensus 143 A~rA~~AGfDgVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~~vg~d~~v~ 208 (353)
T cd02930 143 AALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIII 208 (353)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999998299989962567614877338754788574579878887999999999999709987499
No 213
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.74 E-value=18 Score=17.25 Aligned_cols=145 Identities=17% Similarity=0.257 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------
Q ss_conf 37877787642102453201111479999999--961246776524677530137222899999999999999-------
Q gi|254780812|r 121 LPIFQSISILRKKLPNHITLIGFCGAPWTVAS--YMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY------- 191 (346)
Q Consensus 121 ~~v~eAi~~~k~~l~~~~pLIGF~GgP~Tlas--YmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y------- 191 (346)
+.-+++|+.+++++++ + +|| +|.=.|... ..++-| -+|. --|-.-..+++.+-+.-+.|
T Consensus 51 p~a~~~I~~l~~~~p~-~-~vG-aGTV~~~e~~~~a~~aG--A~Fi-------VSP~~~~~v~~~a~~~~i~~iPGv~Tp 118 (212)
T PRK05718 51 PAALEAIRAIRKEVPE-A-LIG-AGTVLNPEQLAQAIEAG--AQFI-------VSPGLTPPLLKACQDGPIPLIPGVNTP 118 (212)
T ss_pred CHHHHHHHHHHHHCCC-C-EEE-EEEECCHHHHHHHHHCC--CCEE-------ECCCCCHHHHHHHHHCCCCEECCCCCH
T ss_conf 6199999999975898-1-796-53313488999999849--9899-------848998999999998199765786999
Q ss_pred --HHHHHHCCCCEEEECCCCHHHC-CHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC-CCCHHHHHCCCCCCEEEC
Q ss_conf --7777754981678438311006-835677761272268999986308862360243110-000134201478722304
Q gi|254780812|r 192 --LIAQIHAGVDVIQIFDTHAGCL-GEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA-GYMLKNYRRLTDSNAIGL 267 (346)
Q Consensus 192 --l~~Qi~aGad~iqIFDs~ag~L-s~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~-~~~l~~~~~~~g~d~isi 267 (346)
+..-.++|++.+.+|= |+.+ .+++ +++++.-.|+++++- .+|. -.++.+|.+..++-
T Consensus 119 sEi~~A~~~G~~~vK~FP--A~~~gG~~~------------lkal~~p~p~i~~~p-tGGV~~~N~~~yl~~~~v~---- 179 (212)
T PRK05718 119 SELMLAMELGLRTFKFFP--AEASGGVKM------------LKALAGPFSDVRFCP-TGGISPANYRDYLALPNVL---- 179 (212)
T ss_pred HHHHHHHHCCCCEEEECC--CCCCCCHHH------------HHHHHCCCCCCEEEE-CCCCCHHHHHHHHCCCCEE----
T ss_conf 999999987999899787--610179999------------999856589982886-5998987899998178869----
Q ss_pred CCCCCHHHHHHHCCCEEEECC-CCH-HHH-CCCHHHHHHHHHHHHHHH
Q ss_conf 677998999970798469688-884-677-099889999999999973
Q gi|254780812|r 268 DWSVPLSFALELQKEGPVQGN-LDP-MRL-VVGNQVMIDGVNAILDVL 312 (346)
Q Consensus 268 D~~~dl~~a~~~~~~~~lqGN-ldP-~~L-~~~~e~i~~~~~~~l~~~ 312 (346)
++-|. +=| ..+ -+++++|.+.+++.++..
T Consensus 180 ----------------avgGS~l~~~~~v~~~d~~~I~~~a~~~~~~v 211 (212)
T PRK05718 180 ----------------CIGGSWMVPKDAIENGDWDRITRLAREAVALV 211 (212)
T ss_pred ----------------EEECHHHCCHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf ----------------99873528999986489999999999999973
No 214
>PRK08782 consensus
Probab=54.35 E-value=18 Score=17.21 Aligned_cols=148 Identities=17% Similarity=0.205 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-----
Q ss_conf 237877787642102453201111479999999---961246776524677530137222899999999999999-----
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVAS---YMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY----- 191 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~Tlas---YmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y----- 191 (346)
.+..+++|+.++++.++ -++| +|.=.|... ..-.| -+|.. -|-.-..+++.+.+.-+.|
T Consensus 52 t~~a~~~i~~l~~~~p~--~~vG-aGTV~~~e~~~~a~~aG---A~FiV-------SP~~~~~v~~~a~~~~i~~iPGv~ 118 (219)
T PRK08782 52 TPVAIEALAMLKRELPN--IVIG-AGTVLSERQLRQSVDAG---ADFLV-------TPGTPAPLARLLADAPIPAVPGAA 118 (219)
T ss_pred CCHHHHHHHHHHHHCCC--CEEE-EEEECCHHHHHHHHHCC---CCEEE-------CCCCCHHHHHHHHHCCCCEECCCC
T ss_conf 93399999999986899--4799-99705899999999849---98998-------789979999999981997647859
Q ss_pred ----HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf ----7777754981678438311006835677761272268999986308862360243110000134201478722304
Q gi|254780812|r 192 ----LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGL 267 (346)
Q Consensus 192 ----l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isi 267 (346)
+..-.++|++.+.+|= |+.+.+-.|- ++++.-+|+++++- .+| ++.
T Consensus 119 TpSEi~~A~~~G~~~vKlFP--A~~~Gg~~~l-----------kal~~pfp~~~f~p-TGG----------------V~~ 168 (219)
T PRK08782 119 TPTELLTLMGLGFRVCKLFP--ATAVGGLQML-----------KGLAGPLSELKLCP-TGG----------------ISE 168 (219)
T ss_pred CHHHHHHHHHCCCCEEEECC--CHHCCCHHHH-----------HHHHCCCCCCEEEE-CCC----------------CCH
T ss_conf 99999999987999899777--3220849999-----------99847699981876-799----------------898
Q ss_pred CCCCCHHHHHHHCCCEEEEC-CCCHHH-H-CCCHHHHHHHHHHHHHHHC
Q ss_conf 67799899997079846968-888467-7-0998899999999999732
Q gi|254780812|r 268 DWSVPLSFALELQKEGPVQG-NLDPMR-L-VVGNQVMIDGVNAILDVLG 313 (346)
Q Consensus 268 D~~~dl~~a~~~~~~~~lqG-NldP~~-L-~~~~e~i~~~~~~~l~~~~ 313 (346)
| ++.+....+.-.++-| ++-|.- + -+++++|.+.+++.++..+
T Consensus 169 ~---N~~~yl~~~~v~~vgGS~l~~~~li~~~dw~~I~~~a~~~~~~v~ 214 (219)
T PRK08782 169 T---NAAEFLSQPNVLCIGGSWMVPKDWLAQGQWDKVKESSAKAAAIVR 214 (219)
T ss_pred H---HHHHHHHCCCEEEEECHHHCCHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 7---899998079939998825389999861999999999999999999
No 215
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.83 E-value=18 Score=17.15 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=25.8
Q ss_pred HHHHHHCCCCEEEEC-------------------CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHC-CCCEEE
Q ss_conf 777775498167843-------------------8311006835677761272268999986308-862360
Q gi|254780812|r 192 LIAQIHAGVDVIQIF-------------------DTHAGCLGEHEFENYAARSVGRIISAVRRKY-PNAKFI 243 (346)
Q Consensus 192 l~~Qi~aGad~iqIF-------------------Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~-~~vpiI 243 (346)
++.-.+||.|.|.|- |-|+| |.+.--+| ..+|++++|+.. ++.|+.
T Consensus 155 A~rA~~AGfDgVEiH~ahGYLl~qFlS~~~N~RtDeYGG--S~ENR~Rf----~lEii~avr~~vg~d~~v~ 220 (338)
T cd04733 155 ARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGG--SLENRARL----LLEIYDAIRAAVGPGFPVG 220 (338)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCC--CHHHHHHH----HHHHHHHHHHHHCCCCEEE
T ss_conf 999998399989982365548998629876899685798--98899889----9999999999719988699
No 216
>PRK05414 urocanate hydratase; Provisional
Probab=53.42 E-value=18 Score=17.11 Aligned_cols=177 Identities=14% Similarity=0.130 Sum_probs=88.5
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHCCCC---------------------CCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 77787642102453201-1114799999999612467---------------------7652467753013722289999
Q gi|254780812|r 124 FQSISILRKKLPNHITL-IGFCGAPWTVASYMISGGF---------------------IKDHGQNRVFAYQNSRAFNWLL 181 (346)
Q Consensus 124 ~eAi~~~k~~l~~~~pL-IGF~GgP~TlasYmieG~~---------------------sk~~~~~~~~~~~~p~~~~~ll 181 (346)
-||++++++......|+ ||++|---+|.-++++-+- --.|+....++.++|+.+.+.
T Consensus 220 deai~~~~~A~~~k~~iSIgl~GNaadl~~~l~~r~i~pDlvTDQTSaHDPl~GY~P~G~t~EEa~~lr~~dP~~f~~~- 298 (558)
T PRK05414 220 DEALALAEEAKAAGEPVSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPQGWTLEEARELRKEDPEKYVKA- 298 (558)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHH-
T ss_conf 9999999999863886068762239999999995799751677765455842355889999999999988798999999-
Q ss_pred HHHHHHHHHHHHHHH---HCCCCEEEECCCCHHHCCHHHH-----HHHHCCCH-HHHHHHHHHHCCCCEEECCCCCCCCC
Q ss_conf 999999999977777---5498167843831100683567-----77612722-68999986308862360243110000
Q gi|254780812|r 182 DFLSDVSAEYLIAQI---HAGVDVIQIFDTHAGCLGEHEF-----ENYAARSV-GRIISAVRRKYPNAKFISFAKGAGYM 252 (346)
Q Consensus 182 ~~lt~~~~~yl~~Qi---~aGad~iqIFDs~ag~Ls~~~f-----~~f~~p~~-kkI~~~ik~~~~~vpiI~f~~g~~~~ 252 (346)
..+....++++.. +.|+- .||= ++.+-.+-+ +.|..|-. ..++ -| +||.|.++.
T Consensus 299 --v~~Sm~rHv~Aml~l~~~G~~---~FDY-GNn~r~~A~~aG~~~aF~~PgfVp~yi---------rP--lFc~G~GPF 361 (558)
T PRK05414 299 --AKASMARHVEAMLAFQARGAY---TFDY-GNNIRQMAFDAGVKNAFDFPGFVPAYI---------RP--LFCEGIGPF 361 (558)
T ss_pred --HHHHHHHHHHHHHHHHHCCCE---EEEC-CHHHHHHHHHCCCCCCCCCCCCHHHHH---------HH--HHHCCCCCC
T ss_conf --999999999999999987986---8866-668999999758323677876178861---------03--553377873
Q ss_pred --------HHHHHCCCC---CCEEECCCCCCHHHHHHHCCCEEEECCCCHH-HHCC---CHHHHHHHHHHHHHHHC-CCC
Q ss_conf --------134201478---7223046779989999707984696888846-7709---98899999999999732-599
Q gi|254780812|r 253 --------LKNYRRLTD---SNAIGLDWSVPLSFALELQKEGPVQGNLDPM-RLVV---GNQVMIDGVNAILDVLG-SGP 316 (346)
Q Consensus 253 --------l~~~~~~~g---~d~isiD~~~dl~~a~~~~~~~~lqGNldP~-~L~~---~~e~i~~~~~~~l~~~~-~~~ 316 (346)
-+++.. |. .+++. +......|.+.-..++.+|| .|. ++.. ....+-.+..++++.+. ++|
T Consensus 362 RWValSGdpeDi~~-TD~~~~e~f~-~~~~l~~WI~~A~e~~~fqG--lpARI~wlg~~~R~~~~lafN~~V~~G~l~aP 437 (558)
T PRK05414 362 RWVALSGDPEDIYK-TDAKVKELFP-DDRHLHNWIDMARERILFQG--LPARICWLGLGERARLGLAFNEMVRNGELKAP 437 (558)
T ss_pred EEEECCCCHHHHHH-HHHHHHHHCC-CHHHHHHHHHHHHHHCCCCC--CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 23553798788899-9999998675-30678899999986121036--75047862730799999999999862961478
Q ss_pred CEEEEC
Q ss_conf 289608
Q gi|254780812|r 317 FIFNLG 322 (346)
Q Consensus 317 ~I~nLG 322 (346)
-++.=.
T Consensus 438 IvigRD 443 (558)
T PRK05414 438 IVIGRD 443 (558)
T ss_pred EEECCC
T ss_conf 785456
No 217
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=53.24 E-value=19 Score=17.09 Aligned_cols=13 Identities=38% Similarity=0.340 Sum_probs=6.1
Q ss_pred HHCCCCEEEECCC
Q ss_conf 7549816784383
Q gi|254780812|r 196 IHAGVDVIQIFDT 208 (346)
Q Consensus 196 i~aGad~iqIFDs 208 (346)
+++||-+|+|=|.
T Consensus 94 ~~aG~agi~IED~ 106 (243)
T cd00377 94 EEAGAAGIHIEDQ 106 (243)
T ss_pred HHCCCCEEEECCC
T ss_conf 9749967986587
No 218
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=52.95 E-value=19 Score=17.06 Aligned_cols=95 Identities=22% Similarity=0.204 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCH-HHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC--CCCCCC-----CHHHH
Q ss_conf 99999997777754981678438311-00683567776127226899998630886236024--311000-----01342
Q gi|254780812|r 185 SDVSAEYLIAQIHAGVDVIQIFDTHA-GCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF--AKGAGY-----MLKNY 256 (346)
Q Consensus 185 t~~~~~yl~~Qi~aGad~iqIFDs~a-g~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f--~~g~~~-----~l~~~ 256 (346)
|+-+++.++.--++|||++++.=+.- .-.+.+. ...|.++|.+ .+|++.| +..++. .+..+
T Consensus 77 ~~~ai~la~~A~~~Gad~i~~~pP~y~~~~~~~~----l~~yf~~va~-------~lPi~lYn~P~~tg~~l~~~~~~~L 145 (279)
T cd00953 77 LEESIELARAAKSFGIYAIASLPPYYFPGIPEEW----LIKYFTDISS-------PYPTFIYNYPKATGYDINARMAKEI 145 (279)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHH----HHHHHHHHHH-------HCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 9999999999997799989976886789999999----9999999985-------0987699677535888899999999
Q ss_pred HCCCCCCEEEC-CCCCCHHHHH---HHCCCEEEECCCCH
Q ss_conf 01478722304-6779989999---70798469688884
Q gi|254780812|r 257 RRLTDSNAIGL-DWSVPLSFAL---ELQKEGPVQGNLDP 291 (346)
Q Consensus 257 ~~~~g~d~isi-D~~~dl~~a~---~~~~~~~lqGNldP 291 (346)
.+. ..+++++ |+.-|+.... ..+++..+...-|.
T Consensus 146 ~~~-~~~v~giKds~~d~~~~~~~~~~~~~~~v~~G~d~ 183 (279)
T cd00953 146 KKA-GGDIIGVKDTNEDISHMLEYKRLVPDFKVYSGPDS 183 (279)
T ss_pred HHC-CCCEEEEECCCCCHHHHHHHHHHCCCCEEECCCHH
T ss_conf 817-99889997387699999999984899478569579
No 219
>KOG0259 consensus
Probab=52.62 E-value=8.5 Score=19.46 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=25.8
Q ss_pred CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 798469688884677099889999999999973
Q gi|254780812|r 280 QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVL 312 (346)
Q Consensus 280 ~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~ 312 (346)
++...+||-| |.+|-.++++..+.+.++|+.-
T Consensus 310 ~p~TiiQ~Al-P~IL~kTp~efF~k~~~~lk~n 341 (447)
T KOG0259 310 GPATIIQGAL-PDILEKTPEEFFDKKLSFLKSN 341 (447)
T ss_pred CCCHHHHHHH-HHHHHHCHHHHHHHHHHHHHHH
T ss_conf 9508598775-8898748399999999998762
No 220
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family; InterPro: IPR011929 Members of this family show sequence similarity to members of the NlpC/P60 family, described by Anantharaman and Aravind . The NlpC/P60 family includes a number of characterised bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes..
Probab=52.48 E-value=6.3 Score=20.38 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=20.3
Q ss_pred HHHCCCCCCCCCC----H--------HHHHCCCCCH
Q ss_conf 9966998999976----1--------4623123457
Q gi|254780812|r 10 EVLQGNVINPPPI----W--------LMRQAGRYLP 33 (346)
Q Consensus 10 ~al~g~~~~r~PV----W--------~MrQAGrylp 33 (346)
|+|-|+..+-||+ | ||..|+|||=
T Consensus 35 RaLyG~EPE~PPpYaPDWAE~G~~e~L~~Aa~R~lv 70 (135)
T TIGR02219 35 RALYGEEPEAPPPYAPDWAEVGGGELLLEAALRHLV 70 (135)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 530588888300004751414888368888865512
No 221
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=52.35 E-value=19 Score=16.99 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=33.4
Q ss_pred CCEEECCCCC----------CHHHHHH--HCCCEEEECCCCHHHHCCC-HHHHHHHHHHHHHHHC
Q ss_conf 7223046779----------9899997--0798469688884677099-8899999999999732
Q gi|254780812|r 262 SNAIGLDWSV----------PLSFALE--LQKEGPVQGNLDPMRLVVG-NQVMIDGVNAILDVLG 313 (346)
Q Consensus 262 ~d~isiD~~~----------dl~~a~~--~~~~~~lqGNldP~~L~~~-~e~i~~~~~~~l~~~~ 313 (346)
.+.+|+||+. +.++..+ +.+..++.||+ |..|..| -+++.+...+++++.+
T Consensus 220 lEl~g~D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~-p~vlRESLL~~vfe~ger~V~a~k 283 (361)
T COG1759 220 LELLGIDRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNI-PVVLRESLLPKVFEMGERFVEATK 283 (361)
T ss_pred EEEEEEEHHEECCCHHHCCCCHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4576300201316212115787899745899528998785-132477778999999999999998
No 222
>pfam00838 TCTP Translationally controlled tumour protein.
Probab=52.22 E-value=8.3 Score=19.55 Aligned_cols=62 Identities=15% Similarity=0.271 Sum_probs=39.7
Q ss_pred HHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHH
Q ss_conf 777549816784383110068356777612722689999863088623602431100001342
Q gi|254780812|r 194 AQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNY 256 (346)
Q Consensus 194 ~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~ 256 (346)
.+.+.|+|+|-=|.=.-...+.+.|..|...|+|++.+.+++..|.- +-.|-+++......+
T Consensus 61 ~~~~~vvDIV~~~rLqet~f~Kk~y~~yiK~YmK~v~~~L~e~~pe~-V~~Fk~~a~~~vK~i 122 (166)
T pfam00838 61 ETVERVVDIVLNFRLQETSFDKKSFKTYIKGYMKAVKAKLQEENPER-VSLFKKNIQGWVKSL 122 (166)
T ss_pred CCCEEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHH
T ss_conf 67269888877170067478999999999999999999876519678-999999889999987
No 223
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=51.73 E-value=20 Score=16.93 Aligned_cols=69 Identities=12% Similarity=0.247 Sum_probs=40.2
Q ss_pred CCCEEECCCCCCHHHHHHH-CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCE--EEECCCCCCCCCHHHHHHH
Q ss_conf 8722304677998999970-798469688884677099889999999999973259928--9608976336688999999
Q gi|254780812|r 261 DSNAIGLDWSVPLSFALEL-QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFI--FNLGHGITPQVDPKNVLDL 337 (346)
Q Consensus 261 g~d~isiD~~~dl~~a~~~-~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I--~nLGhGi~p~tp~eNv~~~ 337 (346)
|-...++||.. ++++ .....|-|+|+| +.|.+ .+. ..-+||- .|.|=...-.=+++.|++|
T Consensus 136 GGtG~~fdW~~----l~~~~~~~~~LAGGL~p-------~NV~~----a~~-~~~~p~gVDvsSGVE~~G~KD~~Ki~~f 199 (207)
T PRK13958 136 GGTGQTYDWTI----LKHIKDIPYLIAGGINS-------ENIQT----VNQ-LKLSHQGYDLASGIEVNGRKDIEKMTAI 199 (207)
T ss_pred CCCCCCCCHHH----HHHCCCCCEEEEECCCH-------HHHHH----HHH-CCCCCCEEECCCCCCCCCCCCHHHHHHH
T ss_conf 99878668788----86255898699946988-------99999----996-3579998982165678898799999999
Q ss_pred HHHHHHCC
Q ss_conf 99997306
Q gi|254780812|r 338 VKTVRSEK 345 (346)
Q Consensus 338 v~~vr~~~ 345 (346)
|+.||+.|
T Consensus 200 i~~vk~~~ 207 (207)
T PRK13958 200 VNIVKGDR 207 (207)
T ss_pred HHHHHCCC
T ss_conf 99985789
No 224
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=51.28 E-value=20 Score=16.88 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=31.3
Q ss_pred HHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH
Q ss_conf 776127226899998630886236024311000013420147872230467799899997
Q gi|254780812|r 219 ENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE 278 (346)
Q Consensus 219 ~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~ 278 (346)
-+...+..+++++.+++.+-.-|+++-.+|. +.-.++.+..|+|+-.-|-..-.++|+.
T Consensus 165 MTttm~~~~~viE~L~eeGiRd~v~v~vGGA-pvtq~~a~~iGAD~~~~dAs~Av~~ak~ 223 (227)
T COG5012 165 MTTTMIGMKDVIELLKEEGIRDKVIVMVGGA-PVTQDWADKIGADAYAEDASDAVKKAKA 223 (227)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECCC-CCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 7887997999999999768854748852686-2468999971877567677889999999
No 225
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=51.12 E-value=20 Score=16.86 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=39.2
Q ss_pred HHHHHHHHHHCCCCEEEECCCC--HHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC-CCCHHHHHCCCCCCE
Q ss_conf 9999777775498167843831--1006835677761272268999986308862360243110-000134201478722
Q gi|254780812|r 188 SAEYLIAQIHAGVDVIQIFDTH--AGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA-GYMLKNYRRLTDSNA 264 (346)
Q Consensus 188 ~~~yl~~Qi~aGad~iqIFDs~--ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~-~~~l~~~~~~~g~d~ 264 (346)
..+|...-++||+|.+-|==|- |..+|++.- +++ .+.+.+.+. ++|+|.=.|.+ ..-| .|++ ||+.+
T Consensus 145 ~~~~a~~vv~AG~DLLvIqgT~vSaehv~~e~~-----E~L-nLk~fi~eL--DvPVv~Ggv~~Y~~AL-hLMR-tGAag 214 (376)
T TIGR01304 145 ASKLAPVVVEAGADLLVIQGTVVSAEHVSSESG-----EPL-NLKKFIQEL--DVPVVAGGVVTYTTAL-HLMR-TGAAG 214 (376)
T ss_pred HHHHHHHHHHHCCCEEEEHHHHHHHEEECCCCC-----CCH-HHHHHHHHC--CCCEEECCCCCHHHHH-HHHH-HCCEE
T ss_conf 678889999717300420012320100468888-----721-488897548--9887883853088999-9863-01137
Q ss_pred EECC
Q ss_conf 3046
Q gi|254780812|r 265 IGLD 268 (346)
Q Consensus 265 isiD 268 (346)
+=|.
T Consensus 215 vlVG 218 (376)
T TIGR01304 215 VLVG 218 (376)
T ss_pred EEEC
T ss_conf 8864
No 226
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810 An Escherichia coli gene designated purU has been identified and characterised. The gene codes for a 280-amino-acid protein, PurU (P37051 from SWISSPROT, 3.5.1.10 from EC). PurU is an enzyme that catalyses the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate ,. 10-formyltetrahydrofolate + H(2)O = formate +tetrahydrofolate Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer of 32kDa subunits, is activated by methionine and inhibited by glycine. Heterotropic cooperativity is observed for activation by methionine in the presence of glycine and for inhibition by glycine in the presence of methionine. These results suggest that formyl-FH4 hydrolase is a regulatory enzyme whose main function is to balance the pools of FH4 and C1-FH4 in response to changing growth conditions. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. ; GO: 0008864 formyltetrahydrofolate deformylase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=50.90 E-value=18 Score=17.12 Aligned_cols=41 Identities=7% Similarity=0.080 Sum_probs=29.8
Q ss_pred CCEEECCCCCCCCCHHHHHCCCCC----CEEECCCCCCHHHHHHHCCCE
Q ss_conf 623602431100001342014787----223046779989999707984
Q gi|254780812|r 239 NAKFISFAKGAGYMLKNYRRLTDS----NAIGLDWSVPLSFALELQKEG 283 (346)
Q Consensus 239 ~vpiI~f~~g~~~~l~~~~~~~g~----d~isiD~~~dl~~a~~~~~~~ 283 (346)
||++|+ -|.|+..+-.+. |+ |++.||++-+.+...+.|.++
T Consensus 223 GVKiIG---ATAHYVt~~LDe-GPIIeQDv~rVdH~~~~e~l~r~GrDi 267 (294)
T TIGR00655 223 GVKIIG---ATAHYVTEELDE-GPIIEQDVVRVDHTDNVEDLIRAGRDI 267 (294)
T ss_pred CCEEEE---CCEEEECCCCCC-CCCEEECCEEECCCCCHHHHHHCCCCH
T ss_conf 833770---200100335788-890253304527667778998606751
No 227
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.81 E-value=6.2 Score=20.42 Aligned_cols=182 Identities=14% Similarity=0.167 Sum_probs=80.7
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHC---CCCCHHHHHHHHHCCCHHHH--HCCHHHHHHHHHHHHHHCC---------CCE
Q ss_conf 579999966998999976146231---23457999997615538998--4279999998721287629---------872
Q gi|254780812|r 5 KQKILEVLQGNVINPPPIWLMRQA---GRYLPEYRQIRKKFKNFLDM--CYTPEYTVELTLQPIRRYN---------FDA 70 (346)
Q Consensus 5 ~~~~l~al~g~~~~r~PVW~MrQA---Grylpey~~~r~~~~~f~~~--~~~pela~evtl~p~~r~~---------~Da 70 (346)
+++||+-++.-+.-+--+=.|.++ |||+||+.++...++ +|+ ++|.+--+=-++.-+++|. +-.
T Consensus 397 ~~~Fl~il~~~~~~~r~l~~Mn~~GVLgrylPew~~Ivg~MQ--fdlfH~YTVDeH~lr~v~~l~~~a~~~~~~~hPl~~ 474 (867)
T COG2844 397 RRLFLSILRSPNAIRRTLRPMNRYGVLGRYLPEWGKIVGLMQ--FDLFHIYTVDEHTLRVVLKLARFARGEARHEHPLAS 474 (867)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCC--CCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 999999983898578999977774348875533776540246--674301224299999999888750121233475267
Q ss_pred EEECCCCEECCHHHCCCE---EEECCCC-C--CCCCCCCHHHHHC-CCCCHHHHHHHHH-----HHHHHHHHHHCCCCCC
Q ss_conf 652133200104324433---7316887-5--2223333355420-5670123443237-----8777876421024532
Q gi|254780812|r 71 AILFSDILVIADALGRNV---RFVENEG-P--RMDPITTQEIYLL-NPNIDLFLNYLLP-----IFQSISILRKKLPNHI 138 (346)
Q Consensus 71 aIlFsDIl~~~ealG~~v---~f~~~~G-P--~~~p~~~~~~~~~-~~~~~~~~~~l~~-----v~eAi~~~k~~l~~~~ 138 (346)
.|+ +- +-..|+|=... ++.+|.| + ++.--.-...... -.+.. ..+-+.. ..=++.--|.-++|..
T Consensus 475 ~l~-~~-~~~~elLylAaLfHDIaKGRggDHs~lGA~~a~~fc~~hGL~~~-e~~lvaWLVe~HLlMS~tAQrrDl~Dp~ 551 (867)
T COG2844 475 QLM-PR-LEKRELLYLAALFHDIAKGRGGDHSILGAEDARRFCERHGLNSR-ETELVAWLVENHLLMSVTAQRRDLNDPK 551 (867)
T ss_pred HHC-CC-CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 650-37-88731999999988862378986677619999999998299877-7689999999877767888761789869
Q ss_pred HHHHHH---HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 011114---7999999996124677652467753013722289999999999999977777549
Q gi|254780812|r 139 TLIGFC---GAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG 199 (346)
Q Consensus 139 pLIGF~---GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG 199 (346)
.+.-|+ +.+=.| .|+. .+..-.---.+|..|+.-...+.+.+......|...|
T Consensus 552 vI~~Fa~~Vq~~~rL-~~L~-------~LTVaDI~AtgP~vWN~WK~sLLr~Ly~~T~~~l~gg 607 (867)
T COG2844 552 VIDAFAEAVQDEERL-RYLL-------VLTVADIRATGPGVWNSWKASLLRELYYATERVLRGG 607 (867)
T ss_pred HHHHHHHHHCCHHHH-HHHH-------HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999985688998-8999-------9887765066865037889999999999999997268
No 228
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=50.68 E-value=20 Score=16.82 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=35.5
Q ss_pred HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCC-HHHHHHHHHHHCCCCEEECCCCCCC--CCHHHHHCCCCCCEEECC
Q ss_conf 7777754981678438311006835677761272-2689999863088623602431100--001342014787223046
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARS-VGRIISAVRRKYPNAKFISFAKGAG--YMLKNYRRLTDSNAIGLD 268 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~-~kkI~~~ik~~~~~vpiI~f~~g~~--~~l~~~~~~~g~d~isiD 268 (346)
++.--++||+.|.|-- ---.+.|. -+. .-..+..+++.. ++|+|.- ++.. .....+.+.||+|.+-+.
T Consensus 154 ~~~~~~~G~~~ltvH~----RT~~q~y~---~~~~dw~~i~~~~~~~-~iPvi~N-GdI~s~~d~~~~~~~tg~dgvMiG 224 (312)
T PRK10550 154 ADAVQQAGATELVVHG----RTKEQGYR---AEHIDWQAIGEIRQRL-TIPVIAN-GEIWDWQSAQQCMAISGCDAVMIG 224 (312)
T ss_pred HHHHHHCCCCEEEEEC----CCHHHCCC---CCCCCHHHHHHHHHHC-CCCEEEE-CCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 9999973998799905----52653589---9834899999999748-9989970-795999999999871489999965
No 229
>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=50.46 E-value=4.1 Score=21.69 Aligned_cols=201 Identities=12% Similarity=0.127 Sum_probs=84.5
Q ss_pred EEEECCCCCCCCCCC-CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 373168875222333-3355420567012344323787778764210245320111147999999996124677652467
Q gi|254780812|r 88 VRFVENEGPRMDPIT-TQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQN 166 (346)
Q Consensus 88 v~f~~~~GP~~~p~~-~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~ 166 (346)
+-|+.+.-|+-+... +.......|+.. +.+..-...|..+++++. -+-...+.-+=+++|.-++ .+|...
T Consensus 290 ~~l~~~G~~k~~~~~~~k~~~~~~p~l~---~~~~~~~~~~~~~~~r~~-~~~~~~~t~AAL~lA~~l~-----~~y~~~ 360 (1190)
T TIGR02784 290 AFLTSKGEPKSASAVLKKAIQKSLPDLA---EALEDAASRVEALRERLR-ALRMAERTLAALRLAARLL-----QRYAAL 360 (1190)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-----HHHHHH
T ss_conf 8740688766303465456565458999---999999999999998999-9999998899999999999-----999999
Q ss_pred HHH--HCCCHHHHHHHHHHHHH-HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC--C--
Q ss_conf 753--01372228999999999-9999977777549816784383110068356777612722689999863088--6--
Q gi|254780812|r 167 RVF--AYQNSRAFNWLLDFLSD-VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP--N-- 239 (346)
Q Consensus 167 ~~~--~~~~p~~~~~ll~~lt~-~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~--~-- 239 (346)
|+- ..+-.+++++-...|++ ....++..-.+-|+|=|= -| -|--=||+|+. -++.+.+++-.-.. +
T Consensus 361 K~~rG~LDF~DLI~rt~~LL~r~~~g~WV~YKLD~GiDHIL-vD-EAQDTSP~QW~-----iI~~LA~eFF~GegAR~~s 433 (1190)
T TIGR02784 361 KKARGLLDFDDLIERTVALLARPSAGAWVHYKLDRGIDHIL-VD-EAQDTSPEQWE-----IIQALAEEFFSGEGARSGS 433 (1190)
T ss_pred HHHCCCCCHHHHHHHHHHHCCCCCCCCCEEHCCCCCCCEEE-EC-CHHCCCHHHHH-----HHHHHHHHHCCCCCCCCCC
T ss_conf 87478987677999999970889867430010177504377-12-20048865899-----9999987630686402467
Q ss_pred ---CEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCEE--EECCCCHHHHC---CCHHHHHHHHHHHHHH
Q ss_conf ---236024311000013420147872230467799899997079846--96888846770---9988999999999997
Q gi|254780812|r 240 ---AKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGP--VQGNLDPMRLV---VGNQVMIDGVNAILDV 311 (346)
Q Consensus 240 ---vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~--lqGNldP~~L~---~~~e~i~~~~~~~l~~ 311 (346)
.---.|.-|- .+..-|+-+ |++==.++ ..+....+.+ .-=++.+..|. -|..+|.+.|..+.+.
T Consensus 434 Gr~~~RTiFAVGD-eKQSIYSFQ-GA~P~~F~------~~~~~~~~k~~~~~~~f~~~~L~~SFRST~dvL~~VD~vF~d 505 (1190)
T TIGR02784 434 GREVERTIFAVGD-EKQSIYSFQ-GADPERFA------EERRLFSRKVRAVGRKFEDVSLTYSFRSTPDVLAAVDLVFAD 505 (1190)
T ss_pred CCCCCCCEEEECC-EEECCCCCC-CCCHHHHH------HHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6224532688767-310445456-77556899------998899999986100267730202305848999999887448
Q ss_pred H
Q ss_conf 3
Q gi|254780812|r 312 L 312 (346)
Q Consensus 312 ~ 312 (346)
=
T Consensus 506 P 506 (1190)
T TIGR02784 506 P 506 (1190)
T ss_pred C
T ss_conf 2
No 230
>PRK06857 consensus
Probab=50.17 E-value=21 Score=16.76 Aligned_cols=147 Identities=16% Similarity=0.222 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-----
Q ss_conf 237877787642102453201111479999999---961246776524677530137222899999999999999-----
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVAS---YMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY----- 191 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~Tlas---YmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y----- 191 (346)
.+..+++|+.++++.++ -+|| +|.=.|... ..-.| -+|.- -|-....+++.+.+.-+-|
T Consensus 47 t~~a~~~I~~l~~~~p~--~~vG-aGTV~~~e~~~~a~~aG---A~FiV-------SP~~~~~v~~~a~~~~i~~iPGv~ 113 (209)
T PRK06857 47 SAAAAEAIRLLREAYPD--MLIG-AGTVLTPEQVDAAKEAG---ADFIV-------SPGFNPNTVKYCQQLNIPIVPGVN 113 (209)
T ss_pred CCCHHHHHHHHHHHCCC--CEEE-EEECCCHHHHHHHHHCC---CCEEE-------CCCCCHHHHHHHHHCCCCEECCCC
T ss_conf 93299999999975899--4899-99376799999999839---99999-------089999999999974996547879
Q ss_pred ----HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf ----7777754981678438311006835677761272268999986308862360243110000134201478722304
Q gi|254780812|r 192 ----LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGL 267 (346)
Q Consensus 192 ----l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isi 267 (346)
+..-.++|++.+.+|=. ....++.+. +.++.-+|+++++- .+|. +.
T Consensus 114 TpsEi~~A~~~G~~~vKlFPA-~~~gG~~~l------------kal~~p~p~~~~~p-tGGV----------------~~ 163 (209)
T PRK06857 114 NPSLVEQALEMGLTTLKFFPA-EASGGVNML------------KALLAPYPNLQIMP-TGGI----------------NP 163 (209)
T ss_pred CHHHHHHHHHCCCCEEEECCC-CCCCCHHHH------------HHHHCCCCCCEEEE-CCCC----------------CH
T ss_conf 999999999879998997866-212669999------------99865389980996-4898----------------88
Q ss_pred CCCCCHHHHHHHCCCEEEECC-CCHH-HH-CCCHHHHHHHHHHHHHHH
Q ss_conf 677998999970798469688-8846-77-099889999999999973
Q gi|254780812|r 268 DWSVPLSFALELQKEGPVQGN-LDPM-RL-VVGNQVMIDGVNAILDVL 312 (346)
Q Consensus 268 D~~~dl~~a~~~~~~~~lqGN-ldP~-~L-~~~~e~i~~~~~~~l~~~ 312 (346)
| ++.+..+.+.-.+..|. +=|. .+ -+++++|.+.+++.++..
T Consensus 164 ~---N~~~yl~~~~v~~~gGS~l~~~~~i~~~d~~~I~~~a~~~~~~v 208 (209)
T PRK06857 164 S---NIKDYLAIPNVVACGGTWMVPKKLIDNGNWDEIGRLVREVVALV 208 (209)
T ss_pred H---HHHHHHCCCCEEEEECHHHCCHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 7---89999859988999893658999997289999999999999973
No 231
>TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel. This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process.
Probab=49.97 E-value=21 Score=16.74 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=38.2
Q ss_pred HHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHH--CCCCEEECC---CCC-CCCC---HHHHHCCCC
Q ss_conf 9777775498167843831100683567776127226899998630--886236024---311-0000---134201478
Q gi|254780812|r 191 YLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRK--YPNAKFISF---AKG-AGYM---LKNYRRLTD 261 (346)
Q Consensus 191 yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~--~~~vpiI~f---~~g-~~~~---l~~~~~~~g 261 (346)
..+.--+.|||+++.-= | + |-+|..+=+.++.|.- .-+.|+|.| +|- .+-. ...+++. .
T Consensus 85 l~~~a~~~G~dg~L~vt-------P-y---YNKP~q~Gl~~HFkaia~~~~lPiiLYNvPsRTg~~l~peTv~rLA~~-~ 152 (288)
T TIGR00674 85 LTKFAEKLGVDGFLVVT-------P-Y---YNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLEPETVKRLAEE-P 152 (288)
T ss_pred HHHHHHHCCCCEEECCC-------C-C---CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCC-C
T ss_conf 99999868956884588-------7-5---518882138999999998716988984287641017862899997301-6
Q ss_pred CCEEEC-CCCCCHHHHHH----HC-CCE-EEECC
Q ss_conf 722304-67799899997----07-984-69688
Q gi|254780812|r 262 SNAIGL-DWSVPLSFALE----LQ-KEG-PVQGN 288 (346)
Q Consensus 262 ~d~isi-D~~~dl~~a~~----~~-~~~-~lqGN 288 (346)
-+++++ |..-|++.+-+ .+ ++. ++.||
T Consensus 153 ~NI~aiKEa~g~l~~~~~i~~~~p~~dF~vlsGD 186 (288)
T TIGR00674 153 NNIVAIKEATGNLERISEIKAITPDDDFVVLSGD 186 (288)
T ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf 7706887268888999999986689853888478
No 232
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=49.34 E-value=21 Score=16.67 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=22.2
Q ss_pred HHHCCCCEEEECCCCH----HHCCHH------HH---HHHHCCCHHHHHHHHHHHCCC
Q ss_conf 7754981678438311----006835------67---776127226899998630886
Q gi|254780812|r 195 QIHAGVDVIQIFDTHA----GCLGEH------EF---ENYAARSVGRIISAVRRKYPN 239 (346)
Q Consensus 195 Qi~aGad~iqIFDs~a----g~Ls~~------~f---~~f~~p~~kkI~~~ik~~~~~ 239 (346)
-.+||.|.|+|-=..+ ..|||- .| -+==..+..+|++++++..+.
T Consensus 168 A~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSleNR~Rf~~Eii~aVr~avg~ 225 (362)
T PRK10605 168 AREAGFDLVELHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEVVDAGIAEWGA 225 (362)
T ss_pred HHHCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9983999899702473699973897667898878997899988999999999997398
No 233
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=49.26 E-value=21 Score=16.67 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=10.9
Q ss_pred HHHHHHHHHCCCCEEEECCCC
Q ss_conf 999777775498167843831
Q gi|254780812|r 189 AEYLIAQIHAGVDVIQIFDTH 209 (346)
Q Consensus 189 ~~yl~~Qi~aGad~iqIFDs~ 209 (346)
.+.+++..++|||.|.++.|.
T Consensus 172 ~~ia~~~~~~gadgvv~~Nt~ 192 (301)
T PRK07259 172 VEIAKAAEEAGADGLSLINTL 192 (301)
T ss_pred HHHHHHHHHCCCCEEEEECCC
T ss_conf 999999997599889995677
No 234
>PRK07695 transcriptional regulator TenI; Provisional
Probab=49.21 E-value=21 Score=16.66 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=15.1
Q ss_pred HHHHHHCCCCEEEECCCCHHHCCHHHHHH
Q ss_conf 77777549816784383110068356777
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGCLGEHEFEN 220 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~ 220 (346)
+++.+++|++.||+-+-. ++.+++.+
T Consensus 20 v~~al~~Gv~~iQlR~K~---~s~~e~~~ 45 (202)
T PRK07695 20 VAMQIESEVDYIHIRERE---KSAKELYE 45 (202)
T ss_pred HHHHHHCCCCEEEECCCC---CCHHHHHH
T ss_conf 999998799999988999---79999999
No 235
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=49.02 E-value=22 Score=16.64 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=48.9
Q ss_pred HCCCHHHHHHHHHHHHH-------------------HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHH
Q ss_conf 01372228999999999-------------------99999777775498167843831100683567776127226899
Q gi|254780812|r 170 AYQNSRAFNWLLDFLSD-------------------VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRII 230 (346)
Q Consensus 170 ~~~~p~~~~~ll~~lt~-------------------~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~ 230 (346)
|.++|+.+.+++..+.+ ...++++.--++||++|.|-- -...+. |.-+..-..+
T Consensus 114 Ll~~p~~~~~iv~a~~~a~~iPVTvKiRlG~~~~~~~~~~~~~~~e~aG~~~itvHg----RT~~q~---y~g~adw~~i 186 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHG----RTRACL---FNGEAEYDSI 186 (321)
T ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEH----HHHHHH---HCCCCCHHHH
T ss_conf 633989999999999734487469998468885224399999999856988999972----213443---1699877999
Q ss_pred HHHHHHCCCCEEECCCCCCC--CCHHHHHCCCCCCEEECC
Q ss_conf 99863088623602431100--001342014787223046
Q gi|254780812|r 231 SAVRRKYPNAKFISFAKGAG--YMLKNYRRLTDSNAIGLD 268 (346)
Q Consensus 231 ~~ik~~~~~vpiI~f~~g~~--~~l~~~~~~~g~d~isiD 268 (346)
..+|+.. ++|+|. .+|.. .....+.+.+|+|++=+.
T Consensus 187 ~~vk~~~-~iPvi~-NGDI~~~~da~~~l~~tg~dgvMig 224 (321)
T PRK10415 187 RAVKQKV-SIPVIA-NGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred HHHHHCC-CCCEEE-CCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 9998547-997896-5891999999999986299999975
No 236
>PRK13122 consensus
Probab=48.95 E-value=22 Score=16.63 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 23787778764210245320111147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG 199 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG 199 (346)
+..+++-++..|++. ++|++ |++|. || ++.. -.-.|++...++|
T Consensus 60 ~~~~~~~l~~~r~~~--~~piv--------lM~Y~------------------N~-----i~~~---G~~~F~~~~~~~G 103 (242)
T PRK13122 60 IDYIFNQLEKHGDQI--KCNYV--------LMTYY------------------NI-----ICHY---GEQAFFEKCRDTG 103 (242)
T ss_pred HHHHHHHHHHHCCCC--CCCEE--------EEEEC------------------HH-----HHHH---CHHHHHHHHHHCC
T ss_conf 999999999731367--98779--------99851------------------69-----8872---7999999998769
Q ss_pred CCEEEECC
Q ss_conf 81678438
Q gi|254780812|r 200 VDVIQIFD 207 (346)
Q Consensus 200 ad~iqIFD 207 (346)
+|.+-|-|
T Consensus 104 vdGvIipD 111 (242)
T PRK13122 104 VYGLIIPD 111 (242)
T ss_pred CCEEECCC
T ss_conf 98677789
No 237
>PTZ00151 translationally controlled tumor protein; Provisional
Probab=48.49 E-value=10 Score=18.96 Aligned_cols=60 Identities=18% Similarity=0.407 Sum_probs=35.5
Q ss_pred HHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHH
Q ss_conf 7549816784383110068356777612722689999863088623602431100001342
Q gi|254780812|r 196 IHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNY 256 (346)
Q Consensus 196 i~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~ 256 (346)
++.|+|+|-=|-=--...+.+.|..|...|+|+|.+.+++..|.- +=.|-+++...+..+
T Consensus 67 ~~~vvDIV~~~rLqEt~f~Kk~y~~yiK~YmK~v~~kLee~~per-V~~Fk~~a~~~vK~i 126 (173)
T PTZ00151 67 VEMVIDIVDAFQLQSTPFTKKEYSSYIKKYIQRIVAYLEEKNPDR-VEPFKTKAQPFVKHV 126 (173)
T ss_pred CEEEEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHH
T ss_conf 069889877371034588999999999999999999986329889-999999889999999
No 238
>pfam10498 IFT57 Intra-flagellar transport protein 57. Eukaryotic cilia and flagella are specialized organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bidirectional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated. This protein is known as Huntington-interacting protein-1 in humans.
Probab=48.45 E-value=4.3 Score=21.58 Aligned_cols=40 Identities=5% Similarity=0.177 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8999999999997325992896089763366889999999999730
Q gi|254780812|r 299 QVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSE 344 (346)
Q Consensus 299 e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~~ 344 (346)
.+|-++..++-..+..+ |--++-.+|+.+|+.-+..+|+.
T Consensus 300 ~~I~eeLe~vK~emeer------g~~mtD~sPl~~IK~Ai~kLk~E 339 (355)
T pfam10498 300 NEISEELEQVKQEMEER------GASMSDGSPLVKIKQAITKLKEE 339 (355)
T ss_pred HHHHHHHHHHHHHHHHH------CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999985------24567887799999999999999
No 239
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=48.09 E-value=22 Score=16.55 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=11.0
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 599289608976336688999999999973
Q gi|254780812|r 314 SGPFIFNLGHGITPQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 314 ~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~ 343 (346)
+.|+|+-.--+ +.+.+..+.-++.+|+
T Consensus 252 ~~p~IlEtP~~---~~~~~~~~~~i~~lr~ 278 (279)
T cd00019 252 NIPLILETPSE---NRDAAKIKKEIKLLRK 278 (279)
T ss_pred CCCEEEECCCC---CCCHHHHHHHHHHHHH
T ss_conf 98789968999---8760689999999962
No 240
>KOG3045 consensus
Probab=47.82 E-value=16 Score=17.50 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC--CCEEEEC--CCCHHHCCHH----HHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 289999999999999977777549--8167843--8311006835----6777612722689999863088623602431
Q gi|254780812|r 176 AFNWLLDFLSDVSAEYLIAQIHAG--VDVIQIF--DTHAGCLGEH----EFENYAARSVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 176 ~~~~ll~~lt~~~~~yl~~Qi~aG--ad~iqIF--Ds~ag~Ls~~----~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
+..++...|.-.--.|++.|.-+| -.+.++| ||.|=.+=.+ +-..|-..++..|++.|+.+-.++-|.-|.|
T Consensus 110 l~~km~~rL~ggrFR~lNEqLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GC 189 (325)
T KOG3045 110 LQAKMKKRLDGGRFRYLNEQLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGC 189 (325)
T ss_pred HHHHHHHHHCCCCEEHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999986225511202244405775889998851909999999999999871788829999999971767647885366
Q ss_pred CCCCCHHHHHCCCCCCEEECC-----CCCCHHHHHHHCCCEEEE-CCCCHH----HHCC-CHHHHHHHHHHHHHHHCCCC
Q ss_conf 100001342014787223046-----779989999707984696-888846----7709-98899999999999732599
Q gi|254780812|r 248 GAGYMLKNYRRLTDSNAIGLD-----WSVPLSFALELQKEGPVQ-GNLDPM----RLVV-GNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 248 g~~~~l~~~~~~~g~d~isiD-----~~~dl~~a~~~~~~~~lq-GNldP~----~L~~-~~e~i~~~~~~~l~~~~~~~ 316 (346)
|-..+-.. ..-.+.|+| .++-....++ +.++ +-+|=+ .|.| +..+..+|+.++|..+|- =
T Consensus 190 GEakiA~~----~~~kV~SfDL~a~~~~V~~cDm~~----vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~-l 260 (325)
T KOG3045 190 GEAKIASS----ERHKVHSFDLVAVNERVIACDMRN----VPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGL-L 260 (325)
T ss_pred CHHHHHHC----CCCCEEEEEEECCCCCEEECCCCC----CCCCCCCCCEEEEEHHHHCCCHHHHHHHHHHHHCCCCE-E
T ss_conf 42333204----666504663002788535322447----86766754478752755343389999999887335866-9
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 28960897633668899999999997
Q gi|254780812|r 317 FIFNLGHGITPQVDPKNVLDLVKTVR 342 (346)
Q Consensus 317 ~I~nLGhGi~p~tp~eNv~~~v~~vr 342 (346)
||.-. ......|+.|++++.
T Consensus 261 ~IAEv------~SRf~dv~~f~r~l~ 280 (325)
T KOG3045 261 YIAEV------KSRFSDVKGFVRALT 280 (325)
T ss_pred EEEEH------HHHCCCHHHHHHHHH
T ss_conf 99860------221340889999998
No 241
>pfam01373 Glyco_hydro_14 Glycosyl hydrolase family 14. This family are beta amylases.
Probab=47.75 E-value=22 Score=16.51 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=11.1
Q ss_pred CHHHHHCCCCCHHHHH
Q ss_conf 6146231234579999
Q gi|254780812|r 22 IWLMRQAGRYLPEYRQ 37 (346)
Q Consensus 22 VW~MrQAGrylpey~~ 37 (346)
++|..|+||.-+||-.
T Consensus 100 i~ftDr~G~rn~E~lS 115 (399)
T pfam01373 100 MQFKDESGYVNNEALS 115 (399)
T ss_pred CEEECCCCCCCCCCCC
T ss_conf 5677888984835006
No 242
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase; InterPro: IPR010159 This entry represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolase (3.5.1.14 from EC) is a homodimeric zinc-binding mammalian enzyme that catalyzes the hydrolysis of N-alpha-acylated amino acids except L-aspartic acid. , . These enzymes are listed as being members of MEROPS peptidase family S20A (clan MH).; GO: 0004046 aminoacylase activity, 0006520 amino acid metabolic process, 0005737 cytoplasm.
Probab=47.29 E-value=13 Score=18.25 Aligned_cols=10 Identities=10% Similarity=0.378 Sum_probs=6.9
Q ss_pred HHHHHHHHHC
Q ss_conf 7778764210
Q gi|254780812|r 124 FQSISILRKK 133 (346)
Q Consensus 124 ~eAi~~~k~~ 133 (346)
+||||.||.+
T Consensus 123 LEA~R~Lk~~ 132 (433)
T TIGR01880 123 LEAVRNLKAS 132 (433)
T ss_pred HHHHHHHHHC
T ss_conf 9999999865
No 243
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase; InterPro: IPR006363 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobJ and CbiH precorrin-3B C(17)-methyltransferase (2.1.1.131 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyses the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1) . In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone. These proteins belong to the superfamily of tetrapyrrole (corrin/porphyrin) methylases (IPR000878 from INTERPRO), which includes methylases that use S-adenosylmethionine (S-AdoMet) in the methylation of diverse substrates. A number of other methylases in the cobalamin biosynthesis pathway also belong to this domain superfamily (precorrin-3 methylase, IPR012203 from INTERPRO, IPR012059 from INTERPRO, IPR012382 from INTERPRO, IPR012797 from INTERPRO and others), and a fusion of precorrin-3B C17-methyltransferases with precorrin isomerase is represented by IPR014422 from INTERPRO. Nomenclature note: precorrin-3B C17-methyltransferase is one of the two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.133 from EC). ; GO: 0008168 methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=46.96 E-value=4.5 Score=21.43 Aligned_cols=119 Identities=13% Similarity=0.198 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHHHHH---HCCCCCCCH----HHHH---HHH---------CCCHHHHH
Q ss_conf 23787778764210245320111147--999999996---124677652----4677---530---------13722289
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIGFCG--APWTVASYM---ISGGFIKDH----GQNR---VFA---------YQNSRAFN 178 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIGF~G--gP~TlasYm---ieG~~sk~~----~~~~---~~~---------~~~p~~~~ 178 (346)
+.-+-+||.+-++ +.+|.||. .| |=|-+|.-. ++.++..+. .-+= .+. ..+...+-
T Consensus 57 ~~Ra~~Ai~~A~~--G~~VAlvS-SGDpGiYgMA~l~~E~~~~~~~~~~~~dieV~PGiTA~~aAAs~LGaPL~HDFc~I 133 (254)
T TIGR01466 57 IERAELAIELAKE--GKTVALVS-SGDPGIYGMAALVFEILEKKGLEDVAIDIEVIPGITAASAAASLLGAPLGHDFCVI 133 (254)
T ss_pred HHHHHHHHHHHHC--CCEEEEEE-CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 8999999999860--99489993-68752788899999998623899772347985883378999997336311378888
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEE-EECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 9999999999999777775498167-84383110068356777612722689999863088623602431100
Q gi|254780812|r 179 WLLDFLSDVSAEYLIAQIHAGVDVI-QIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG 250 (346)
Q Consensus 179 ~ll~~lt~~~~~yl~~Qi~aGad~i-qIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~ 250 (346)
-|=|.||..-.---+...-|.||-| .|--+++.-= +++|.+.. +|+.+.++ |+.|+ .+.|+.+
T Consensus 134 SLSDlLtPw~~Ie~R~~aAA~aDFVia~YNP~S~~R-~~~~~~a~-----eIL~~~r~--~~TpV-GiVr~Ag 197 (254)
T TIGR01466 134 SLSDLLTPWPVIEKRLRAAAEADFVIAIYNPRSKRR-KEQLRRAV-----EILLEHRK--PDTPV-GIVRNAG 197 (254)
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-HHHHHHHH-----HHHHHHCC--CCCEE-EEEEECC
T ss_conf 745556787899999999844992899974898765-44699999-----99998568--99728-9887458
No 244
>pfam08444 Gly_acyl_tr_C Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region. This family features the C-terminal region of several mammalian specific aralkyl acyl-CoA:amino acid N-acyltransferase (glycine N-acyltransferase) proteins EC:2.3.1.13.
Probab=46.72 E-value=7.3 Score=19.96 Aligned_cols=21 Identities=43% Similarity=0.911 Sum_probs=14.9
Q ss_pred CCCCCC-H-HHHHC-----CCCCHHHHH
Q ss_conf 999976-1-46231-----234579999
Q gi|254780812|r 17 INPPPI-W-LMRQA-----GRYLPEYRQ 37 (346)
Q Consensus 17 ~~r~PV-W-~MrQA-----Grylpey~~ 37 (346)
.+..|| | +|.|. |-.+||||.
T Consensus 6 peG~PVSW~Lmdqtge~rmgyTlPeyR~ 33 (89)
T pfam08444 6 PEGTPVSWSLMDQTGELRMAGTLPKYRR 33 (89)
T ss_pred CCCCEEEEEEECCCCEEEECCCCHHHHC
T ss_conf 9998747998537421100133777875
No 245
>TIGR00494 crcB crcB protein; InterPro: IPR003691 Three genes, crcA, cspE and crcB when present in high copy confer camphor resistance on a cell and suppress mutations in the chromosomal partition gene mukB in Escherichia coli. The cspE gene has been previously identified as a cold shock-like protein with homologues in all organisms tested . Camphor and mukB mutations may interfere with chromosome condensation and high copy crcA, cspE and crcB have been implicated as promoting or protecting chromosome folding .; GO: 0016020 membrane.
Probab=46.51 E-value=21 Score=16.72 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=32.7
Q ss_pred CCCCCCHH---HHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 02453201---111479999999-9612467765246775301372228999999999999997
Q gi|254780812|r 133 KLPNHITL---IGFCGAPWTVAS-YMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYL 192 (346)
Q Consensus 133 ~l~~~~pL---IGF~GgP~Tlas-YmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl 192 (346)
..+++..| .||+|| ||+.| |-. .--.+.++.+..+.++..+...+.-..
T Consensus 58 ~~~~~~~l~i~TGF~G~-~TTFSTfs~----------Et~~Ll~~g~~~~a~Ly~l~~l~~~l~ 110 (119)
T TIGR00494 58 VISPDLKLLIGTGFLGA-FTTFSTFSL----------ETLKLLQEGRLGEAVLYILGTLVGGLI 110 (119)
T ss_pred CCCCCCEEEEEECCCCC-HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 05852045322123131-355689999----------999999712799999999999999999
No 246
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=45.96 E-value=24 Score=16.32 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=63.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEE-CCCCHH--
Q ss_conf 67776127226899998630886236024311000013420147872230467799899997-07984696-888846--
Q gi|254780812|r 217 EFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQ-GNLDPM-- 292 (346)
Q Consensus 217 ~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lq-GNldP~-- 292 (346)
+-++|-..|...|++.++++-.+.-|.=|.||-..+-....+ +..+.|+|-.-.=..... .-.+++|. |-+|=+
T Consensus 46 Qv~~WP~nPvd~iI~~lk~~p~~~vIaD~GCGdA~lA~~~~~--~~kV~SfDLva~n~~Vt~cDi~~~PL~d~svDvaVf 123 (214)
T pfam05148 46 QVKKWPVNPLDVIIRKLKRRPGNGVIADLGCGEARIAFRKRE--FENVHSFDLVAVNKRVIPCDMARVPLEDESVDVAVF 123 (214)
T ss_pred HHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 997489777999999998489971899758865799986467--873885132568988351353368788772636877
Q ss_pred --HHCC-CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf --7709-988999999999997325992896089763366889999999999730
Q gi|254780812|r 293 --RLVV-GNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSE 344 (346)
Q Consensus 293 --~L~~-~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~~ 344 (346)
.|.| +..+...|+.++|+..|. =||.-. ....++++.|++++++.
T Consensus 124 CLSLMGTN~~~fi~EA~RvLk~~G~-L~IAEV------~SRf~~~~~Fv~~~~~~ 171 (214)
T pfam05148 124 CLSLMGTNIADFLKEANRILKNGGL-LKIAEV------RSRFPSVGLFERAFTKL 171 (214)
T ss_pred EHHHHCCCHHHHHHHHHHHCCCCCE-EEEEEE------ECCCCCHHHHHHHHHHC
T ss_conf 5876288779999998760310878-999997------40168989999999975
No 247
>pfam00697 PRAI N-(5'phosphoribosyl)anthranilate (PRA) isomerase.
Probab=45.62 E-value=24 Score=16.29 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=36.2
Q ss_pred CCCEEECCCCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCCHHHHHHHHH
Q ss_conf 8722304677998999970798469688884677099889999999999973259928960897633-668899999999
Q gi|254780812|r 261 DSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITP-QVDPKNVLDLVK 339 (346)
Q Consensus 261 g~d~isiD~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p-~tp~eNv~~~v~ 339 (346)
|-...++||.. +....+......|-|+|+|. .| .+.++..+..+-=.|.|=...| .=+++.|+.|++
T Consensus 127 GGtG~~fdw~~-~~~~~~~~~~~~LAGGL~~~-------NV----~~ai~~~~p~gVDvsSGVE~~pG~KD~~ki~~fi~ 194 (195)
T pfam00697 127 GGTGKLFDWSL-ISKLLLSGLPVILAGGLTPE-------NV----SEAIQTLGPAGVDVSSGVETNPGVKDLEKIRAFVQ 194 (195)
T ss_pred CCCCCCCCHHH-HHHHHHCCCCEEEECCCCHH-------HH----HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHC
T ss_conf 98877548999-86555216878994688989-------99----99998529989994070168899769999999970
Q ss_pred H
Q ss_conf 9
Q gi|254780812|r 340 T 340 (346)
Q Consensus 340 ~ 340 (346)
+
T Consensus 195 A 195 (195)
T pfam00697 195 A 195 (195)
T ss_pred C
T ss_conf 9
No 248
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=45.29 E-value=15 Score=17.71 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3787778764210245320111-147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r 121 LPIFQSISILRKKLPNHITLIG-FCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG 199 (346)
Q Consensus 121 ~~v~eAi~~~k~~l~~~~pLIG-F~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG 199 (346)
..|.+||+.+|++.+ ++-+|. -|-.|+|.--+- |. +.+. . -..| +.-++.|. +-+..|.+||
T Consensus 92 ~lv~rAIr~iK~~fp-dl~vi~DVcLc~YT~hGHc----Gi--l~~~-g-~IdN----D~Tl~~L~----k~Al~~A~AG 154 (320)
T cd04824 92 GPVIQAIKLIREEFP-ELLIACDVCLCEYTSHGHC----GI--LYED-G-TINN----EASVKRLA----EVALAYAKAG 154 (320)
T ss_pred CHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCC----CC--CCCC-C-EECC----HHHHHHHH----HHHHHHHHCC
T ss_conf 499999999998789-8499954101456687777----75--4779-8-1764----89999999----9999999708
Q ss_pred CCEEEECCCCHH
Q ss_conf 816784383110
Q gi|254780812|r 200 VDVIQIFDTHAG 211 (346)
Q Consensus 200 ad~iqIFDs~ag 211 (346)
||+|.=-|..=|
T Consensus 155 aDivAPSdMMDG 166 (320)
T cd04824 155 AHIVAPSDMMDG 166 (320)
T ss_pred CCEECCHHCCCC
T ss_conf 983341311346
No 249
>TIGR00746 arcC carbamate kinase; InterPro: IPR003964 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes. The three- enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 100f total cell protein . Carbamate kinase is involved in the last step of the AD pathway, converting carbamoyl phosphate and ADP into ammonia, carbon dioxide and ATP . The second step of the pathway involves the degradation of L-citrulline to carbamoyl phosphate and L-ornithine, using ornithine carbamoyltransferase . The crystal structure of Enterococcus faecium carbamate kinase has been determined to 2.8A resolution . The enzyme exists as a homodimer of two 33kDa subunits. The hallmark of the dimer is a 16-stranded beta-sheet, surrounded by alpha-helices. Each subunit contains an active site within a large crevice.; GO: 0008804 carbamate kinase activity, 0006525 arginine metabolic process.
Probab=44.99 E-value=11 Score=18.69 Aligned_cols=236 Identities=17% Similarity=0.135 Sum_probs=106.3
Q ss_pred EECCHHHCCCEEEECCCCCCCCCCCCHH--HHH--CCCCCHHHH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0010432443373168875222333335--542--056701234-43237877787642102453201111479999999
Q gi|254780812|r 78 LVIADALGRNVRFVENEGPRMDPITTQE--IYL--LNPNIDLFL-NYLLPIFQSISILRKKLPNHITLIGFCGAPWTVAS 152 (346)
Q Consensus 78 l~~~ealG~~v~f~~~~GP~~~p~~~~~--~~~--~~~~~~~~~-~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~Tlas 152 (346)
|+-+-.-|.+|-+..|-||.+..+.... ... -.+..+... +- ..+..-=-++.++|.+..+=-|+.--+-|+.+
T Consensus 35 l~~~~~~G~~lvi~HGNGPQVG~LlLQ~~A~~~~~~~~~~PLDV~GA-mSQG~IGYml~q~l~~~L~~~g~~~~vaT~~T 113 (321)
T TIGR00746 35 LVKLIKRGYELVITHGNGPQVGLLLLQNQAADSEKVVPAMPLDVLGA-MSQGMIGYMLQQALNNELPKEGLEKPVATVLT 113 (321)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCEECC-CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 99998618979998478036888999998976037889887432020-33530789999999999986689998538999
Q ss_pred HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE--CCCCHH----HCCHHHHHHHHCCCH
Q ss_conf 96124677652467753013722289999999999999977777549816784--383110----068356777612722
Q gi|254780812|r 153 YMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI--FDTHAG----CLGEHEFENYAARSV 226 (346)
Q Consensus 153 YmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI--FDs~ag----~Ls~~~f~~f~~p~~ 226 (346)
..+= ..+| =.++||.. .+=.+.++.-.+-. .-.+.|+.+--= -|+-.| +=||+=.+-+=.+.+
T Consensus 114 Qt~V--D~~D------pAF~nPTK--piGPfY~e~EAk~~-~a~~~g~~~ke~tdGD~g~gwRrVVPSP~P~~I~E~~~I 182 (321)
T TIGR00746 114 QTIV--DPKD------PAFQNPTK--PIGPFYDEEEAKKR-LAAEKGWIVKEDTDGDDGRGWRRVVPSPRPKDIVEAEVI 182 (321)
T ss_pred EEEE--CCCC------CCCCCCCC--CCCCCCCHHHHHHH-HHHCCCCEECCCCCCCCCCCCEEECCCCCCCCCEECHHH
T ss_conf 8888--8888------88785497--51688898999999-986178700478887677830376579999663120778
Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCC--EEECCCCCCHHHH-----HHHCCCE-EEECCCCHHHH-CCC
Q ss_conf 6899998630886236024311000013420147872--2304677998999-----9707984-69688884677-099
Q gi|254780812|r 227 GRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSN--AIGLDWSVPLSFA-----LELQKEG-PVQGNLDPMRL-VVG 297 (346)
Q Consensus 227 kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d--~isiD~~~dl~~a-----~~~~~~~-~lqGNldP~~L-~~~ 297 (346)
+++++. |+.+|+-.+|- ++-+.+ |.. .-+++-.+|=+.| .+++-|. .|-=.+|-+.+ ++.
T Consensus 183 k~L~e~------g~iVI~~GGGG---vPv~~d--g~~kkl~GVeAVIDKDlA~~~LA~~~~AD~L~ILTDVd~vy~nygk 251 (321)
T TIGR00746 183 KTLVEN------GVIVICSGGGG---VPVVED--GAEKKLKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYVNYGK 251 (321)
T ss_pred HHHHHC------CEEEEEECCCC---EEEEEC--CCCCEEEEEEEEECHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCC
T ss_conf 998648------82799857882---035662--8943022011032366888988877438744310201245220778
Q ss_pred H--HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8--899999999999732599289608976336688999999999973
Q gi|254780812|r 298 N--QVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 298 ~--e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~ 343 (346)
| +.+.+-+-.=|+.+...+| |.-|- +.| ||+|-|++|++
T Consensus 252 P~e~~L~~~~~~El~~~~~~G~-Fa~GS-MgP-----KV~AaI~Fv~~ 292 (321)
T TIGR00746 252 PDEKKLREVTVEELEDYEKDGH-FAAGS-MGP-----KVEAAIEFVES 292 (321)
T ss_pred HHHHHHHCCCHHHHHHHHHCCC-CCCCC-CCC-----HHHHHHHHHHC
T ss_conf 2478872469889999985588-66889-860-----38999899871
No 250
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=44.85 E-value=25 Score=16.21 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCH----HHCCHHH------H---HHHHCCCHHHHHHHHHHHCC
Q ss_conf 999999999997777754981678438311----0068356------7---77612722689999863088
Q gi|254780812|r 181 LDFLSDVSAEYLIAQIHAGVDVIQIFDTHA----GCLGEHE------F---ENYAARSVGRIISAVRRKYP 238 (346)
Q Consensus 181 l~~lt~~~~~yl~~Qi~aGad~iqIFDs~a----g~Ls~~~------f---~~f~~p~~kkI~~~ik~~~~ 238 (346)
++.+.+.-++-++.-.+||.|.|+|-=..+ ..|||.. | .+-=..+..+|++++|+..+
T Consensus 147 I~~ii~~f~~aA~ra~~AGfDgVEiHaaHGyLl~qFLSp~~N~RtDeYGGS~eNR~Rf~~Eii~aIR~~vg 217 (338)
T cd02933 147 IPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIG 217 (338)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999998399999982244068998538532689897899989998999999999999729
No 251
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=44.77 E-value=25 Score=16.20 Aligned_cols=68 Identities=12% Similarity=0.232 Sum_probs=41.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHH------------HHHCCCHHHHHHHHH
Q ss_conf 75301372228999999999999997777754981678438311006835677------------761272268999986
Q gi|254780812|r 167 RVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFE------------NYAARSVGRIISAVR 234 (346)
Q Consensus 167 ~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~------------~f~~p~~kkI~~~ik 234 (346)
.++++..|+..++.++.+... +++|+--+-|+||-|.+.+..+.+ +......+++...+.
T Consensus 108 ~~l~~~qp~~~Eq~l~i~~~l--------i~s~~~dliViDSvaal~p~~E~e~~~~d~~vg~~ArlmskalRklt~~l~ 179 (325)
T cd00983 108 DNLLISQPDTGEQALEIADSL--------VRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSIN 179 (325)
T ss_pred HHEEEECCCHHHHHHHHHHHH--------HCCCCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 675896663899999999997--------515887679981511236578876011321143899999999999998753
Q ss_pred HHCCCCEEEC
Q ss_conf 3088623602
Q gi|254780812|r 235 RKYPNAKFIS 244 (346)
Q Consensus 235 ~~~~~vpiI~ 244 (346)
+. ++++|.
T Consensus 180 k~--~~~lIf 187 (325)
T cd00983 180 KS--NTTVIF 187 (325)
T ss_pred CC--CCEEEE
T ss_conf 37--807999
No 252
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=44.55 E-value=10 Score=18.89 Aligned_cols=42 Identities=26% Similarity=0.469 Sum_probs=26.7
Q ss_pred HHHHHHHCCCCCCCCCCH-HHHHCC---CCCHHHHHHHHHCCCHHHHHC
Q ss_conf 799999669989999761-462312---345799999761553899842
Q gi|254780812|r 6 QKILEVLQGNVINPPPIW-LMRQAG---RYLPEYRQIRKKFKNFLDMCY 50 (346)
Q Consensus 6 ~~~l~al~g~~~~r~PVW-~MrQAG---rylpey~~~r~~~~~f~~~~~ 50 (346)
+.|++.|+... .-.++| .|.|.| ||+||+..++..++ +|+.|
T Consensus 334 ~~Fl~IL~sp~-~~~~~Lr~M~~~GVLgryIPEFg~IvgqMQ--fDlfH 379 (692)
T PRK00227 334 GDFFRILSSPV-NSRRVVKQMDRHGLWSRYVPEWDRIRGLMP--REPSH 379 (692)
T ss_pred HHHHHHHCCCC-CHHHHHHHHHHHCCHHHHCCHHHHHCCCCC--CCCCE
T ss_conf 99999984998-668999998773567986700786517757--66550
No 253
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein; InterPro: IPR005675 This model represents largely uncharacterised proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distinct. ; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=44.48 E-value=25 Score=16.17 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999777775498167843831100683567776127226899998630
Q gi|254780812|r 187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRK 236 (346)
Q Consensus 187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~ 236 (346)
....-+..--++|||.+-+.|+.+|-||.+-+ +|++.+|+.
T Consensus 155 YAL~~L~~A~~aGAdwlVlcDTNGGTLP~~I~---------EI~~~Vk~~ 195 (543)
T TIGR00977 155 YALKTLKVAEKAGADWLVLCDTNGGTLPHEIE---------EITKKVKKS 195 (543)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH---------HHHHHHHHH
T ss_conf 99999999984698289995078799850478---------999999986
No 254
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=44.05 E-value=25 Score=16.13 Aligned_cols=136 Identities=17% Similarity=0.224 Sum_probs=70.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC--C--CE
Q ss_conf 753013722289999999999999977777549816784-383110068356777612722689999863088--6--23
Q gi|254780812|r 167 RVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEHEFENYAARSVGRIISAVRRKYP--N--AK 241 (346)
Q Consensus 167 ~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~--~--vp 241 (346)
...+|.+|+.+.++.+.+ .+++|.+.+.+ |-+.-|.-.|... +.-..-+++|.+.+++++. . +|
T Consensus 183 ~~~lyT~Peea~~fve~t----------g~ds~~~~LAvaiGt~HG~Yk~g~~-~L~p~~L~~i~~~v~~~~~~~~~pip 251 (349)
T PRK09197 183 NSKLYTQPEDVAYAYEAL----------GKISPRFTIAASFGNVHGVYKPGNV-KLRPEILKDSQEYVSKKFGLPAKPLN 251 (349)
T ss_pred CCCCCCCHHHHHHHHHHH----------CCCCCCEEEEEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 213579989999999996----------7888754677663145545579987-76868999999999997289887752
Q ss_pred EECCCCCCCCCHHHHHCC--CCCCEEECCCCCCHHHH-----HHH-C-CCEEEE---CC-----------CCHHHHC-CC
Q ss_conf 602431100001342014--78722304677998999-----970-7-984696---88-----------8846770-99
Q gi|254780812|r 242 FISFAKGAGYMLKNYRRL--TDSNAIGLDWSVPLSFA-----LEL-Q-KEGPVQ---GN-----------LDPMRLV-VG 297 (346)
Q Consensus 242 iI~f~~g~~~~l~~~~~~--~g~d~isiD~~~dl~~a-----~~~-~-~~~~lq---GN-----------ldP~~L~-~~ 297 (346)
+. +-+|++.-.+++.+. .|+.=+.+| .|+.+| |+. . +.-.|| || +||...+ ..
T Consensus 252 LV-lHGgSG~~~e~i~~aI~~GV~KiNId--Tdlq~Af~~~ir~~~~~n~d~l~~~~gn~~~~~~p~kK~yDPR~~l~~~ 328 (349)
T PRK09197 252 FV-FHGGSGSTLEEIKEAVSYGVVKMNID--TDTQWAFWRGVLNYYKKNYDYLQGQLGNPEGEDKPNKKYYDPRVWLRAA 328 (349)
T ss_pred EE-EECCCCCCHHHHHHHHHCCCEECCCC--HHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 78-86899999999999998396532456--0889999999999998582765044588644567656777928988999
Q ss_pred HHHHHHHHHHHHHHHCCCC
Q ss_conf 8899999999999732599
Q gi|254780812|r 298 NQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 298 ~e~i~~~~~~~l~~~~~~~ 316 (346)
.+.+.+.++.-++.++..+
T Consensus 329 ~~~m~~~v~~~~~~~gs~g 347 (349)
T PRK09197 329 EASMAARLEEAFKDLNSIG 347 (349)
T ss_pred HHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999838888
No 255
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase; InterPro: IPR005888 The conversion of dTDP-glucose into dTDP-4-keto-6-deoxyglucose by Escherichia coli dTDP-glucose 4,6-dehydratase) takes place in the active site in three steps: dehydrogenation to dTDP-4-ketoglucose, dehydration to dTDP-4-ketoglucose-5,6-ene, and rereduction of C6 to the methyl group. The 4,6-dehydratase makes use of tightly bound NAD^+ as the coenzyme for transiently oxidizing the substrate, activating it for the dehydration step . This and other 4,6-dehydratases catalyze the first committed step in all 6-deoxysugar biosynthetic pathways described to date. Numerous 6-deoxysugars are used in bacterial lipopolysaccharide production as well as in the biosynthesis of a diverse array of secondary metabolites.; GO: 0008460 dTDP-glucose 46-dehydratase activity, 0009225 nucleotide-sugar metabolic process.
Probab=43.96 E-value=26 Score=16.12 Aligned_cols=105 Identities=17% Similarity=0.278 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHHH--HHH----HHHHHHHHHHH--HCCCCEEEEC--CCCH
Q ss_conf 1147999999996124677652467753013-7222899999--999----99999977777--5498167843--8311
Q gi|254780812|r 142 GFCGAPWTVASYMISGGFIKDHGQNRVFAYQ-NSRAFNWLLD--FLS----DVSAEYLIAQI--HAGVDVIQIF--DTHA 210 (346)
Q Consensus 142 GF~GgP~TlasYmieG~~sk~~~~~~~~~~~-~p~~~~~ll~--~lt----~~~~~yl~~Qi--~aGad~iqIF--Ds~a 210 (346)
||.|+=|.- |||+--+.......-++.|- +++..+.|-+ ..+ |++-.-+-.|+ +.-.|+|.=| ||..
T Consensus 9 GFIGsnFvr--y~~~~~~D~~v~vlDkLTYAgn~e~L~~l~~~pr~~Fv~GDI~D~~lv~~~~~e~~~D~VvhFAAESHV 86 (340)
T TIGR01181 9 GFIGSNFVR--YILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVDRLLKEHDPDAVVHFAAESHV 86 (340)
T ss_pred CHHHHHHHH--HHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 525689999--999747995799863544557865552332396615674230228899888400176778862220523
Q ss_pred H--HCCHHHHHHHHCCCHHHHHHHHHHHCC--------CCE-EECCCCC
Q ss_conf 0--068356777612722689999863088--------623-6024311
Q gi|254780812|r 211 G--CLGEHEFENYAARSVGRIISAVRRKYP--------NAK-FISFAKG 248 (346)
Q Consensus 211 g--~Ls~~~f~~f~~p~~kkI~~~ik~~~~--------~vp-iI~f~~g 248 (346)
+ +.+|+-|-+==.==+-.|++++++... ++. ++|.+.+
T Consensus 87 DRSI~~P~~F~~TNv~GT~tLLEA~R~~w~aL~e~~~a~~r~l~HiSTD 135 (340)
T TIGR01181 87 DRSISGPEAFIETNVVGTYTLLEAVRKYWHALREAKKAGVRKLHHISTD 135 (340)
T ss_pred HHCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECC
T ss_conf 3301454114440337889999999740445664451310263576030
No 256
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.92 E-value=16 Score=17.53 Aligned_cols=84 Identities=15% Similarity=0.077 Sum_probs=37.4
Q ss_pred HHHHHCCCCCCEEECCCCCCHHHHHHHCCCEEEE--CCC----CHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECC---
Q ss_conf 1342014787223046779989999707984696--888----8467709988999999999997325992896089---
Q gi|254780812|r 253 LKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQ--GNL----DPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGH--- 323 (346)
Q Consensus 253 l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lq--GNl----dP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGh--- 323 (346)
+..+....|..++-+.+ |++.+.++.+++.++ |.+ .|.-++..++.+++ ..-+-|.+.-|.|
T Consensus 188 l~~l~~~~g~TiI~iTH--dm~~v~~~adrv~vm~~G~Iv~~G~p~evf~~~~~l~~-------~~l~~P~~~~l~~~l~ 258 (286)
T PRK13646 188 LKSLQTDENKAIILISH--DMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLAD-------WHIGLPEIVQLQYDFE 258 (286)
T ss_pred HHHHHHHCCCEEEEECC--CHHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHH-------CCCCCCHHHHHHHHHH
T ss_conf 99999953989999913--89999996999999989899997789999779657987-------8999984999999999
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHCC
Q ss_conf ---7633668899999999997306
Q gi|254780812|r 324 ---GITPQVDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 324 ---Gi~p~tp~eNv~~~v~~vr~~~ 345 (346)
|+.-.--+-..+++++.+|+++
T Consensus 259 ~~~~~~~~~~~~t~e~~~~~~k~~~ 283 (286)
T PRK13646 259 QKYQTKLKDIALTEEAFVSLYKEWQ 283 (286)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 8479986766642999999999975
No 257
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.57 E-value=26 Score=16.08 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf 268999986308862360243110000134201478722304677
Q gi|254780812|r 226 VGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWS 270 (346)
Q Consensus 226 ~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~ 270 (346)
+.+.+..+|++.|..+.|-.-..+-.......+ .|+|.+=+|+-
T Consensus 183 i~~av~~~r~~~~~~~kIeVEv~~l~q~~~a~~-~g~DiIlLDNm 226 (290)
T PRK06559 183 VQKAIAQARAYAPFVKMVEVEVESLAAAEEAAA-AGVDIIMLDNM 226 (290)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH-CCCCEEEECCC
T ss_conf 999999999858987669998568999999986-69999998798
No 258
>KOG2607 consensus
Probab=43.02 E-value=26 Score=16.02 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=12.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 877787642102453201111479
Q gi|254780812|r 123 IFQSISILRKKLPNHITLIGFCGA 146 (346)
Q Consensus 123 v~eAi~~~k~~l~~~~pLIGF~Gg 146 (346)
|-+.|+++++--++.+.+.||+++
T Consensus 66 vk~iiEIL~~Tekdtkn~fG~yss 89 (505)
T KOG2607 66 VKKIIEILLKTEKDTKNIFGRYSS 89 (505)
T ss_pred HHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 999999999607015556655377
No 259
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=42.05 E-value=27 Score=15.92 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=3.9
Q ss_pred CCCEEECCCCCC
Q ss_conf 872230467799
Q gi|254780812|r 261 DSNAIGLDWSVP 272 (346)
Q Consensus 261 g~d~isiD~~~d 272 (346)
|++++.......
T Consensus 40 GfeVi~~g~~~t 51 (143)
T COG2185 40 GFEVINLGLFQT 51 (143)
T ss_pred CCEEEECCCCCC
T ss_conf 937981587589
No 260
>TIGR02146 LysS_fung_arch homocitrate synthase; InterPro: IPR011872 This entry includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus . This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs .; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=41.79 E-value=28 Score=15.89 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=71.4
Q ss_pred CEEEECCCCCCCCCCCCHH---HHHCCCCCH---HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3373168875222333335---542056701---2344323787778764210245320111147999999996124677
Q gi|254780812|r 87 NVRFVENEGPRMDPITTQE---IYLLNPNID---LFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFI 160 (346)
Q Consensus 87 ~v~f~~~~GP~~~p~~~~~---~~~~~~~~~---~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~s 160 (346)
+|+|.|=.-|...+=...+ ...+..+-+ +...+..-+.+.++..-+-=.+.+.++ |+-|-+-+.. +.-
T Consensus 33 GV~~IE~g~P~vS~d~~~~ik~i~~L~~~G~l~a~iv~Hsra~~~D~~~a~~~~Vd~i~~~-~G~S~~~l~~-----~h~ 106 (355)
T TIGR02146 33 GVDYIEVGHPAVSPDIRKDIKLIASLGKEGLLKAKIVTHSRAVLDDIEVAVETEVDRIDVF-FGVSKLLLKY-----KHR 106 (355)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE-EECHHHHHCC-----CCC
T ss_conf 8105724887554778999999983388876003556778999999877642278657874-3005888510-----257
Q ss_pred CCHHHHHHHH-------C----------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHC
Q ss_conf 6524677530-------1----------3722289999999999999977777549816784383110068356777612
Q gi|254780812|r 161 KDHGQNRVFA-------Y----------QNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAA 223 (346)
Q Consensus 161 k~~~~~~~~~-------~----------~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~ 223 (346)
++...+..-+ . .-.+.+..=++- ++.-++.--+.|||=|.|.|| .|...|.++++
T Consensus 107 ~~~~~al~~i~e~I~y~K~~Gphv~VRFtaED~~R~d~~~----L~~v~k~a~~~~vDRVsiADT-vG~~~P~~~y~--- 178 (355)
T TIGR02146 107 KDLEEALEIIAEVIEYAKSHGPHVKVRFTAEDTFRSDLDD----LLKVYKTAKEAGVDRVSIADT-VGVATPRRVYE--- 178 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH----HHHHHHHHHHCCCCEEEEECC-CCCCCCHHHHH---
T ss_conf 7889999999999999972488247886478885121899----999999997618885675134-36788068999---
Q ss_pred CCHHHHHHHHHHHC-CCCEEECCCCC-CCC
Q ss_conf 72268999986308-86236024311-000
Q gi|254780812|r 224 RSVGRIISAVRRKY-PNAKFISFAKG-AGY 251 (346)
Q Consensus 224 p~~kkI~~~ik~~~-~~vpiI~f~~g-~~~ 251 (346)
+++.++..- |++++=.||.| .+.
T Consensus 179 -----L~~~v~~~VGpg~~~~~H~HND~G~ 203 (355)
T TIGR02146 179 -----LVRKVKRVVGPGVDIEIHAHNDLGL 203 (355)
T ss_pred -----HHHHHHHHCCCCCCEEEEEECCHHH
T ss_conf -----9999986408876435630175779
No 261
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=41.71 E-value=28 Score=15.89 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCCCEEEECCC--CHHHCCHHHHHHHHCCC-HHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCC
Q ss_conf 9999977777549816784383--11006835677761272-26899998630886236024311000013420147872
Q gi|254780812|r 187 VSAEYLIAQIHAGVDVIQIFDT--HAGCLGEHEFENYAARS-VGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSN 263 (346)
Q Consensus 187 ~~~~yl~~Qi~aGad~iqIFDs--~ag~Ls~~~f~~f~~p~-~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d 263 (346)
.+.+|++.-.++||+.+.|--= |-.-+||++=+ ..|+ --..+..+|+..|++|+|. .+|....-....-+..+|
T Consensus 152 ~l~~f~~~~~~aG~~~i~vH~R~a~l~Glspk~nR--~ippl~~~~v~~lk~~~p~ipvi~-NGdI~s~~~~~~~l~~~D 228 (333)
T PRK11815 152 FLCDFVDTVAEAGCDRFIVHARKAWLKGLSPKENR--EIPPLDYDRVYRLKRDFPHLTIEI-NGGIKTLEEAKEHLQHVD 228 (333)
T ss_pred HHHHHHHHHHHCCCCEEEEEEHHHHHCCCCHHHHC--CCCCHHHHHHHHHHHHCCCCEEEE-CCCCCCHHHHHHHHHCCC
T ss_conf 99999999997599889996027877267877750--587304899999997667871884-599699999999985599
Q ss_pred EEECC
Q ss_conf 23046
Q gi|254780812|r 264 AIGLD 268 (346)
Q Consensus 264 ~isiD 268 (346)
++-+.
T Consensus 229 GVMiG 233 (333)
T PRK11815 229 GVMIG 233 (333)
T ss_pred EEEEH
T ss_conf 62114
No 262
>KOG2708 consensus
Probab=41.53 E-value=6 Score=20.53 Aligned_cols=83 Identities=11% Similarity=0.204 Sum_probs=36.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-----HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 877787642102453201111-----479999999961246776524677530137222899999999999999777775
Q gi|254780812|r 123 IFQSISILRKKLPNHITLIGF-----CGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIH 197 (346)
Q Consensus 123 v~eAi~~~k~~l~~~~pLIGF-----~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~ 197 (346)
|-+|++...-. .+++-.|-| .|+|...-.- ...+..++++.|-. -.+.|+.++.+--.
T Consensus 57 v~~al~ea~v~-~~diD~icyTKGPGmgaPL~~vai---------vaRtlsllw~kPlv-------~VNHCigHIEMGR~ 119 (336)
T KOG2708 57 VKQALEEAGVT-SDDIDCICYTKGPGMGAPLSVVAI---------VARTLSLLWNKPLV-------GVNHCIGHIEMGRE 119 (336)
T ss_pred HHHHHHHCCCC-HHHCCEEEECCCCCCCCCHHHHHH---------HHHHHHHHHCCCCC-------CCHHHHHHHHHCCE
T ss_conf 99999873997-522878997278987876266899---------99999998279832-------30121111322102
Q ss_pred -CCCC-EEEECCCCHH----HCCHHHHHHHH
Q ss_conf -4981-6784383110----06835677761
Q gi|254780812|r 198 -AGVD-VIQIFDTHAG----CLGEHEFENYA 222 (346)
Q Consensus 198 -aGad-~iqIFDs~ag----~Ls~~~f~~f~ 222 (346)
.||+ .+-+.-|-++ .-|.+-|+-|.
T Consensus 120 iTgA~nPvvLYvSGGNTQvIAYse~rYrIFG 150 (336)
T KOG2708 120 ITGAQNPVVLYVSGGNTQVIAYSEKRYRIFG 150 (336)
T ss_pred ECCCCCCEEEEEECCCEEEEEECCCEEEEEC
T ss_conf 2168897799990796699997154145403
No 263
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=41.44 E-value=28 Score=15.86 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=20.8
Q ss_pred HHHHHHHHHCC-CCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf 89999863088-623602431100001342014787223046779989999
Q gi|254780812|r 228 RIISAVRRKYP-NAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFAL 277 (346)
Q Consensus 228 kI~~~ik~~~~-~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~ 277 (346)
++++.+....| +.|.-.+..|.-..+..... .|+|. +|...+...||
T Consensus 228 ~il~~~~~~LP~~kPryLmGvG~P~~i~~~V~-~GvD~--FDcv~Ptr~AR 275 (366)
T PRK00112 228 RILEHTAPLLPEDKPRYLMGVGTPEDLVEGVA-RGVDM--FDCVMPTRNAR 275 (366)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHH-HCCCC--HHCCCCHHHHH
T ss_conf 99999874488777556535899899999999-38981--11254057771
No 264
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=41.04 E-value=28 Score=15.82 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=41.3
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHH------------HHCCCHHHHHHHHHH
Q ss_conf 53013722289999999999999977777549816784383110068356777------------612722689999863
Q gi|254780812|r 168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFEN------------YAARSVGRIISAVRR 235 (346)
Q Consensus 168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~------------f~~p~~kkI~~~ik~ 235 (346)
++++..|+..++.++.+.. .++.|+-.+-|+||-|.+.+..+.+. ......+++...+.+
T Consensus 106 ~l~~~qpd~~Eqal~i~~~--------li~~~~~~liViDSvaal~p~~E~e~~~~d~~~g~~Ar~ms~alRklt~~l~k 177 (322)
T pfam00154 106 NLLVSQPDTGEQALEIADM--------LVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISK 177 (322)
T ss_pred HEEEECCCHHHHHHHHHHH--------HHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 5389778839999999999--------85379976599825345676888752432232135799999999999999730
Q ss_pred HCCCCEEEC
Q ss_conf 088623602
Q gi|254780812|r 236 KYPNAKFIS 244 (346)
Q Consensus 236 ~~~~vpiI~ 244 (346)
. ++++|.
T Consensus 178 ~--~~~~If 184 (322)
T pfam00154 178 S--NTTVIF 184 (322)
T ss_pred C--CCEEEE
T ss_conf 5--854999
No 265
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=40.34 E-value=29 Score=15.74 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHH
Q ss_conf 99999999999999777775498167843831100683567776127226899998630886236024311000013420
Q gi|254780812|r 178 NWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYR 257 (346)
Q Consensus 178 ~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~ 257 (346)
..+++.=.+.+.+.++.-+++|+|+|-.=-+ ..++++.|+ .+. |+..+.-.+ ...++.++
T Consensus 109 ~~~~~qE~~~l~~~v~~I~~~g~nVVl~~k~---------I~d~A~~~l-------~k~--gI~~vr~vk--~~dl~rla 168 (261)
T cd03334 109 DPVILQEKEYLKNLVSRIVALRPDVILVEKS---------VSRIAQDLL-------LEA--GITLVLNVK--PSVLERIS 168 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCC---------CCHHHHHHH-------HHC--CCEEEECCC--HHHHHHHH
T ss_conf 9999999999999999999609999998897---------798999999-------987--996890389--99999999
Q ss_pred CCCCCCEE-ECCCCC---CHHHHH-----HHC----C--CE-EEECCCCHH----HHCCCHHHHHHHHHHHHHHH
Q ss_conf 14787223-046779---989999-----707----9--84-696888846----77099889999999999973
Q gi|254780812|r 258 RLTDSNAI-GLDWSV---PLSFAL-----ELQ----K--EG-PVQGNLDPM----RLVVGNQVMIDGVNAILDVL 312 (346)
Q Consensus 258 ~~~g~d~i-siD~~~---dl~~a~-----~~~----~--~~-~lqGNldP~----~L~~~~e~i~~~~~~~l~~~ 312 (346)
+.||++++ |+|... .+..+- +++ . .. .+.|-=.|. +|.|+.+.+.+++++++..+
T Consensus 169 r~tGa~iv~s~d~l~~~~~LG~c~~f~v~~i~~e~~~~Kt~~~~egc~~~~~~TIlLRG~~~~~L~evkR~l~da 243 (261)
T cd03334 169 RCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFM 243 (261)
T ss_pred HHHCCEEECCHHHCCCCCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 986990334677746865384512699999952577733699996789986779999879887999999999999
No 266
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=40.19 E-value=29 Score=15.73 Aligned_cols=10 Identities=30% Similarity=0.723 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q ss_conf 1479999999
Q gi|254780812|r 143 FCGAPWTVAS 152 (346)
Q Consensus 143 F~GgP~Tlas 152 (346)
|.-.||..-+
T Consensus 92 ~~~s~fd~~s 101 (329)
T TIGR03569 92 FLSTPFDLES 101 (329)
T ss_pred EEECCCCHHH
T ss_conf 9989698999
No 267
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=39.82 E-value=29 Score=15.69 Aligned_cols=48 Identities=23% Similarity=0.352 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH-----------HHHH-------------HHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 77652467753013722289999-----------9999-------------99999977777549816784383
Q gi|254780812|r 159 FIKDHGQNRVFAYQNSRAFNWLL-----------DFLS-------------DVSAEYLIAQIHAGVDVIQIFDT 208 (346)
Q Consensus 159 ~sk~~~~~~~~~~~~p~~~~~ll-----------~~lt-------------~~~~~yl~~Qi~aGad~iqIFDs 208 (346)
|--.|...++|+.++| |.+|- ++|. +++..|++.-.++|+|+.-||||
T Consensus 581 GGATfDVamRFL~EdP--WeRL~~lRk~~PNvlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDs 652 (1149)
T COG1038 581 GGATFDVAMRFLKEDP--WERLERLRKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDS 652 (1149)
T ss_pred CCCHHHHHHHHHCCCH--HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 8713788898641488--89999998768646899986005656767796689999999987669648984100
No 268
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=39.72 E-value=30 Score=15.68 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=26.5
Q ss_pred HHHHHHHCCCCEEEECCCCHH----HCCHHH---HHHHH------CCCHHHHHHHHHHHC-CCCEE
Q ss_conf 977777549816784383110----068356---77761------272268999986308-86236
Q gi|254780812|r 191 YLIAQIHAGVDVIQIFDTHAG----CLGEHE---FENYA------ARSVGRIISAVRRKY-PNAKF 242 (346)
Q Consensus 191 yl~~Qi~aGad~iqIFDs~ag----~Ls~~~---f~~f~------~p~~kkI~~~ik~~~-~~vpi 242 (346)
-++.-.+||.|.|+|-=..+- .|||.. =++|. ..+..+|++++|+.. ++.|+
T Consensus 146 AA~~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~EIi~~Ir~~vg~~f~i 211 (343)
T cd04734 146 AARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIV 211 (343)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 999999739988984457774699846985589967679888999899999999999981987761
No 269
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=39.45 E-value=8.1 Score=19.64 Aligned_cols=76 Identities=14% Similarity=0.063 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCH
Q ss_conf 99999996124677652467753013722289999999999999977777549816784383110068356777612722
Q gi|254780812|r 147 PWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSV 226 (346)
Q Consensus 147 P~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~ 226 (346)
=+-+|.|++=.=||-|-...+. .++.+.+++||..+-+..-.--+..-+.=+=+|-| |=.|+.++-.
T Consensus 173 ~~~~A~Y~~vN~SSPNTPgLR~--LQ~~~~~~~LL~~~k~~~~~L~~~~~KY~P~~VKI----APDL~~~dl~------- 239 (370)
T TIGR01036 173 VGPLADYLVVNVSSPNTPGLRD--LQYKESLRDLLTAVKEETDGLRRVHRKYVPVLVKI----APDLSESDLL------- 239 (370)
T ss_pred HHHCCCEEEEECCCCCCCCHHH--HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE----CCCCCHHHHH-------
T ss_conf 7321070788635889735132--40143589999999999999998612788578972----6898821389-------
Q ss_pred HHHHHHHHHH
Q ss_conf 6899998630
Q gi|254780812|r 227 GRIISAVRRK 236 (346)
Q Consensus 227 kkI~~~ik~~ 236 (346)
+|++.+.+.
T Consensus 240 -~IAd~~v~~ 248 (370)
T TIGR01036 240 -DIADSAVEL 248 (370)
T ss_pred -HHHHHHHHC
T ss_conf -999999871
No 270
>KOG2794 consensus
Probab=39.41 E-value=17 Score=17.30 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 23787778764210245320111147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG 199 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG 199 (346)
-.+|.+||+++|+..++=+----.|-.|+|---+. |. -.+ .-...+++.+|+|-+ .. .+|..||
T Consensus 108 ~gpvi~ai~~lr~~fPdL~i~cDVclc~YsshGHc----Gl-l~E---dG~i~~~esv~rlae----vA----v~yAkAG 171 (340)
T KOG2794 108 NGPVIRAIRLLRDRFPDLVIACDVCLCEYSSHGHC----GL-LGE---DGVINNDESVHRLAE----VA----VSYAKAG 171 (340)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC----CE-ECC---CCCCCCHHHHHHHHH----HH----HHHHHCC
T ss_conf 88477789999875866078753330345578866----13-336---652157888999999----99----9988627
Q ss_pred CCEEEECCCC
Q ss_conf 8167843831
Q gi|254780812|r 200 VDVIQIFDTH 209 (346)
Q Consensus 200 ad~iqIFDs~ 209 (346)
||+|.=-|-.
T Consensus 172 a~vVapSDmm 181 (340)
T KOG2794 172 ADVVAPSDMM 181 (340)
T ss_pred CCEECCHHHH
T ss_conf 9553606753
No 271
>TIGR01264 tyr_amTase_E tyrosine aminotransferase; InterPro: IPR005957 This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate. L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate.; GO: 0004838 tyrosine transaminase activity, 0030170 pyridoxal phosphate binding, 0009072 aromatic amino acid family metabolic process.
Probab=39.09 E-value=18 Score=17.12 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=27.4
Q ss_pred HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 0798469688884677099889999999999973
Q gi|254780812|r 279 LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVL 312 (346)
Q Consensus 279 ~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~ 312 (346)
+|+...+||-| |.+|..||++....|.+.|+.-
T Consensus 290 ~GpntlvQGAl-~~iL~~TPq~Yf~~~~~~l~~n 322 (415)
T TIGR01264 290 LGPNTLVQGAL-PEILLKTPQEYFDGTVSVLESN 322 (415)
T ss_pred CCCCHHHHHHH-HHHHHHCCHHHHHHHHHHHHHH
T ss_conf 46201144217-9886406556778999998740
No 272
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II; InterPro: IPR014119 The proteins in this entry are component II of the heterodimeric heptaprenyl diphosphate synthase. They are found proximate to the gene for component I (IPR009920 from INTERPRO). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis..
Probab=39.06 E-value=30 Score=15.61 Aligned_cols=139 Identities=19% Similarity=0.298 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHC-CCCEEECCCCC
Q ss_conf 137222899999-9999999997777754981678438311006835677761272268999986308-86236024311
Q gi|254780812|r 171 YQNSRAFNWLLD-FLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKY-PNAKFISFAKG 248 (346)
Q Consensus 171 ~~~p~~~~~ll~-~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~-~~vpiI~f~~g 248 (346)
.++|. +|++|. .+.++|.- ++=||=| .-.|++-.-.|++||-..---.- ..|...-...|
T Consensus 127 i~dp~-~H~~LS~tivEvc~G----------EIEQIkD-------kYN~dQ~lR~YLRRIKRKTALLIA~SCqLGAia~G 188 (325)
T TIGR02748 127 IKDPR-AHQILSKTIVEVCLG----------EIEQIKD-------KYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASG 188 (325)
T ss_pred CCCHH-HHHHHHHHHHHHHHC----------CCHHHHC-------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 69827-889999999988622----------1010010-------13788860036656668899999987765200058
Q ss_pred CCC-CHHHHHCCCCCCEEECCCCC--CH-H---HHHHHCCCE---EEECCCC-HHHHC-CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 000-01342014787223046779--98-9---999707984---6968888-46770-998899999999999732599
Q gi|254780812|r 249 AGY-MLKNYRRLTDSNAIGLDWSV--PL-S---FALELQKEG---PVQGNLD-PMRLV-VGNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 249 ~~~-~l~~~~~~~g~d~isiD~~~--dl-~---~a~~~~~~~---~lqGNld-P~~L~-~~~e~i~~~~~~~l~~~~~~~ 316 (346)
.+. ....+-. -|+ =+|+.+.+ |+ + .-.++|+.. -+|||+- |++-- .++-.+++...++..+.
T Consensus 189 a~~~~~~~LY~-FGY-YvGMSyQI~DDiLDFvgTee~LGKPAG~DLlQGNvTLPvLYAl~d~~~~K~~i~~v~~~~---- 262 (325)
T TIGR02748 189 ADEAIVKKLYW-FGY-YVGMSYQIIDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYALEDPIGLKKRIEQVLEET---- 262 (325)
T ss_pred CCHHHHHHHHH-HHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC----
T ss_conf 89878773655-335-420145444321366466311688757653552016788885159788899997303445----
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 289608976336688999999999973
Q gi|254780812|r 317 FIFNLGHGITPQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 317 ~I~nLGhGi~p~tp~eNv~~~v~~vr~ 343 (346)
| .++.+.++.+|++||+
T Consensus 263 -----g-----~v~~~em~~~i~~vk~ 279 (325)
T TIGR02748 263 -----G-----SVTAEEMEELIEEVKK 279 (325)
T ss_pred -----C-----CCCHHHHHHHHHHHHH
T ss_conf -----6-----7688899999999850
No 273
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.73 E-value=31 Score=15.58 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=40.7
Q ss_pred CCCEEECCCCCCHHHHHHHCC--------CEEEECCCCHHHHCCCHHHHHHH------HHHHHHHHCCCCCEEEECCCCC
Q ss_conf 872230467799899997079--------84696888846770998899999------9999997325992896089763
Q gi|254780812|r 261 DSNAIGLDWSVPLSFALELQK--------EGPVQGNLDPMRLVVGNQVMIDG------VNAILDVLGSGPFIFNLGHGIT 326 (346)
Q Consensus 261 g~d~isiD~~~dl~~a~~~~~--------~~~lqGNldP~~L~~~~e~i~~~------~~~~l~~~~~~~~I~nLGhGi~ 326 (346)
|..++-+.+ |++++.++.+ +++.+| .|.-++..++.+.+. +.++.......|+ +++ -.
T Consensus 195 g~Tvi~vTH--dl~~v~~~aDRvivl~~G~Iv~~G--tp~evf~~~~~l~~~~l~~P~~~~l~~~L~~~g~--~~~--~~ 266 (287)
T PRK13637 195 NMTIILVSH--SMEDVAKIADRIIVMNKGRCELQG--TPREVFKEVDTLESIGLAVPQVTYLVRKLRKKGF--NIP--DD 266 (287)
T ss_pred CCEEEEECC--CHHHHHHHCCEEEEEECCEEEEEC--CHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHCCC--CCC--CC
T ss_conf 989999957--999999969999999899999987--8899876988998769999919999999997599--999--88
Q ss_pred CCCCHHHHHHHHHHHHHCCC
Q ss_conf 36688999999999973069
Q gi|254780812|r 327 PQVDPKNVLDLVKTVRSEKI 346 (346)
Q Consensus 327 p~tp~eNv~~~v~~vr~~~~ 346 (346)
|-|..|-++.+++..|+.|+
T Consensus 267 ~~t~~e~~~~l~~~l~~~~~ 286 (287)
T PRK13637 267 IFTIEEAKEELLKYLRSAKI 286 (287)
T ss_pred CCCHHHHHHHHHHHHHHCCC
T ss_conf 66899999999999976758
No 274
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit; InterPro: IPR006470 The sequences in this group represent the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (IPR006443 from INTERPRO) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane . In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within this group. This appears to be the case for the alpha, gamma and epsilon (accessory protein IPR006452 from INTERPRO) chains as well. ; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0016021 integral to membrane.
Probab=38.58 E-value=26 Score=16.08 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCEEEECCCCH---------HH
Q ss_conf 272268999986308862360243110000134201478722304677998999970798469688884---------67
Q gi|254780812|r 223 ARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDP---------MR 293 (346)
Q Consensus 223 ~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lqGNldP---------~~ 293 (346)
..|.+=|++..+++.-|.. |.-.|.-..++.|.+. +--+ |+.+ +--+.+=.| +.| .+
T Consensus 122 iQY~NGiVDF~h~kCIGCg--yCi~GCPFnIPR~~k~-dnr~----yKCt------lC~DRVsvG-~ePACvKtCPT~ai 187 (293)
T TIGR01582 122 IQYQNGIVDFDHEKCIGCG--YCIVGCPFNIPRIDKV-DNRA----YKCT------LCIDRVSVG-QEPACVKTCPTNAI 187 (293)
T ss_pred EEECCCEEECCCCCEECCC--CCCCCCCCCCCCCCCC-CCCC----EEEC------CCCCEEECC-CCCCCCCCCCCCCC
T ss_conf 7504863741158600067--3025878888888744-5751----1104------540000137-89650012776431
Q ss_pred HCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 709988999999999997325992
Q gi|254780812|r 294 LVVGNQVMIDGVNAILDVLGSGPF 317 (346)
Q Consensus 294 L~~~~e~i~~~~~~~l~~~~~~~~ 317 (346)
-||++|++++..++.++..+++||
T Consensus 188 ~FG~KEdM~~~a~~~vadLK~RGY 211 (293)
T TIGR01582 188 SFGFKEDMKERAEKRVADLKSRGY 211 (293)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 158757899998788888763488
No 275
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=38.57 E-value=31 Score=15.56 Aligned_cols=87 Identities=13% Similarity=0.163 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHH
Q ss_conf 20111147999999996124677652467753013722289999999999999977777549816784-38311006835
Q gi|254780812|r 138 ITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEH 216 (346)
Q Consensus 138 ~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~ 216 (346)
+|=++| ||.++...- ...+....--+|.++|+ .|+...+++|||.|.+ +++
T Consensus 43 Vpn~t~--g~~~v~~i~----~~t~~~~DvHLMv~~P~--------------~~i~~~~~~g~d~I~~H~Ea-------- 94 (220)
T PRK05581 43 VPNLTI--GPPVVEAIR----KVTKLPLDVHLMVENPD--------------RYVPDFAKAGADIITFHVEA-------- 94 (220)
T ss_pred CCCCCC--CHHHHHHHH----HHCCCCEEEEEEEECHH--------------HHHHHHHHCCCCEEEECCCC--------
T ss_conf 775563--999999998----41899647899971888--------------87999997399889981675--------
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHC
Q ss_conf 677761272268999986308862360243110000134201
Q gi|254780812|r 217 EFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRR 258 (346)
Q Consensus 217 ~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~ 258 (346)
.+...++++.+|+.+..+-+..-+...-..+..+.+
T Consensus 95 ------~~~~~~~i~~ik~~g~k~Glalnp~T~~~~l~~~l~ 130 (220)
T PRK05581 95 ------SEHIHRLLQLIKEAGIKAGLVLNPATPLEYLEYVLP 130 (220)
T ss_pred ------CCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
T ss_conf ------027999999999749970467669999899999987
No 276
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=38.55 E-value=31 Score=15.56 Aligned_cols=177 Identities=16% Similarity=0.217 Sum_probs=85.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 77876421024532011114799999999612467765246775301372228999999999999997777754981678
Q gi|254780812|r 125 QSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQ 204 (346)
Q Consensus 125 eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iq 204 (346)
+|++.+++ +++.+-+|= +|-|.-.+- |.+-....+. .+ |+..---=-+.+|.-.-..++-+++|||.+.
T Consensus 17 ~Ai~~a~~-v~~~~diiE-vGTpLik~e------G~~aV~~lr~-~~--pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~t 85 (217)
T COG0269 17 EAIEIAEE-VADYVDIIE-VGTPLIKAE------GMRAVRALRE-LF--PDKIIVADLKTADAGAIEARMAFEAGADWVT 85 (217)
T ss_pred HHHHHHHH-HHHCCEEEE-ECCHHHHHH------HHHHHHHHHH-HC--CCCEEEEEEEECCHHHHHHHHHHHCCCCEEE
T ss_conf 99999997-122132998-076999985------1799999998-78--9986886203224048999999973898799
Q ss_pred ECCCCHHHCCHHHHHH----------------HHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf 4383110068356777----------------612722689999863088623602431100001342014787223046
Q gi|254780812|r 205 IFDTHAGCLGEHEFEN----------------YAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLD 268 (346)
Q Consensus 205 IFDs~ag~Ls~~~f~~----------------f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD 268 (346)
|-- .=+.+.-.. +...-..+-.+.+++.+++. +++| +| ......+..
T Consensus 86 V~g----~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~-~~~H-~g-----------~D~q~~G~~ 148 (217)
T COG0269 86 VLG----AADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQ-VILH-RG-----------RDAQAAGKS 148 (217)
T ss_pred EEE----CCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCE-EEEE-EC-----------CCHHHHCCC
T ss_conf 980----488899999999999839869998516899999999999718978-9997-04-----------347650899
Q ss_pred C-CCCHHHHHHHC---CCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCC-CCCEEEECCCCCCCCC-HHHHHHHHHHHH
Q ss_conf 7-79989999707---9846968888467709988999999999997325-9928960897633668-899999999997
Q gi|254780812|r 269 W-SVPLSFALELQ---KEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGS-GPFIFNLGHGITPQVD-PKNVLDLVKTVR 342 (346)
Q Consensus 269 ~-~~dl~~a~~~~---~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~-~~~I~nLGhGi~p~tp-~eNv~~~v~~vr 342 (346)
| ..++...+++. -.+++-|.++|..+ ..+.+ +..||=-|-+|..... .+-.+.|.+.++
T Consensus 149 ~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i---------------~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 149 WGEDDLEKIKKLSDLGAKVAVAGGITPEDI---------------PLFKGIGADIVIVGRAITGAKDPAEAARKFKEEID 213 (217)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCHHHH---------------HHHHCCCCCEEEECCHHCCCCCHHHHHHHHHHHHH
T ss_conf 417789999986236835998668788788---------------99864899799988221489997999999999864
Q ss_pred HC
Q ss_conf 30
Q gi|254780812|r 343 SE 344 (346)
Q Consensus 343 ~~ 344 (346)
.+
T Consensus 214 ~~ 215 (217)
T COG0269 214 KI 215 (217)
T ss_pred CC
T ss_conf 25
No 277
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=38.48 E-value=28 Score=15.83 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=32.6
Q ss_pred CCHHHHHCCCCCCEEECCCCC--CHHHH-----H---H--HCCCEEEECCCCHHHHCCC-HHHHHHHHHHHHHHH
Q ss_conf 001342014787223046779--98999-----9---7--0798469688884677099-889999999999973
Q gi|254780812|r 251 YMLKNYRRLTDSNAIGLDWSV--PLSFA-----L---E--LQKEGPVQGNLDPMRLVVG-NQVMIDGVNAILDVL 312 (346)
Q Consensus 251 ~~l~~~~~~~g~d~isiD~~~--dl~~a-----~---~--~~~~~~lqGNldP~~L~~~-~e~i~~~~~~~l~~~ 312 (346)
..+..+.+ ..+.+|+|++. |++.. + + +.++.++.||+ |..+..| -+++.+...+..++.
T Consensus 206 yFySpl~~--~lEllg~D~R~esniDg~~rlPa~~qle~~~~p~~vvvGn~-p~vlRESLL~~vf~~ge~fV~a~ 277 (356)
T PRK13278 206 YFYSPIKN--RLELLGIDRRYESNIDGLVRIPAKDQLEAGIDPTYVVTGNI-PLVLRESLLPQVFEYGERFVEAS 277 (356)
T ss_pred HCCCCCCC--CEEEEECCEEEEECCHHHCCCCHHHHHHCCCCCCEEEECCC-CCEEEHHHHHHHHHHHHHHHHHH
T ss_conf 20352006--61366310034405223204887888536899846998885-32441765799999999999999
No 278
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=38.29 E-value=31 Score=15.53 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=16.7
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 3899842799999987212876298726
Q gi|254780812|r 44 NFLDMCYTPEYTVELTLQPIRRYNFDAA 71 (346)
Q Consensus 44 ~f~~~~~~pela~evtl~p~~r~~~Daa 71 (346)
-|-|...+|- +-+-.-++.|+.|..
T Consensus 69 ~~~dv~~dp~---~wAKk~v~~~gaD~I 93 (322)
T PRK04452 69 PFGDVMNDPA---AWAKKCVEKYGADMI 93 (322)
T ss_pred HHHHHHCCHH---HHHHHHHHHCCCCEE
T ss_conf 8645522999---999999987188789
No 279
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=38.23 E-value=31 Score=15.52 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH-CCCCEEEE
Q ss_conf 999999999777775-49816784
Q gi|254780812|r 183 FLSDVSAEYLIAQIH-AGVDVIQI 205 (346)
Q Consensus 183 ~lt~~~~~yl~~Qi~-aGad~iqI 205 (346)
..|+...+.+...++ .|+|.+.+
T Consensus 96 ~~t~~g~~Ni~~l~~~lgvD~i~~ 119 (343)
T TIGR03573 96 WNTELGVKNLNNLIKKLGFDLHTI 119 (343)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 779899999999998369985874
No 280
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=38.05 E-value=31 Score=15.50 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=22.8
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 77530137222899999999999999777775498167843831
Q gi|254780812|r 166 NRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTH 209 (346)
Q Consensus 166 ~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ 209 (346)
...|+-++++.+.+|++.++. .|+=+||+-|-+
T Consensus 101 vlqWlpdH~~ll~rL~~~L~P-----------gg~LAVQmPdN~ 133 (257)
T COG4106 101 VLQWLPDHPELLPRLVSQLAP-----------GGVLAVQMPDNL 133 (257)
T ss_pred HHHHCCCCHHHHHHHHHHHCC-----------CCEEEEECCCCC
T ss_conf 664436408999999985088-----------856999788764
No 281
>TIGR01693 UTase_glnD protein-P-II uridylyltransferase; InterPro: IPR010043 This entry describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for signal-transduction protein PII, and acts as the sensory component of the nitrogen regulation (ntr) system . The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. The activity of the PII protein is stimulated by glutamine and inhibited by 2-oxoglutarate. Under glutamate-limiting conditions, PII is uridylylated by GlnD leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters . Not all homologues of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see IPR002332 from INTERPRO), but the modification site is preserved in the PII homologue of all species with a member of this family. ; GO: 0008773 [protein-PII] uridylyltransferase activity, 0006807 nitrogen compound metabolic process.
Probab=37.13 E-value=4.8 Score=21.23 Aligned_cols=44 Identities=32% Similarity=0.614 Sum_probs=28.1
Q ss_pred HHHHHHHHCCCCCCCCCCHH---HHHC---CCCCHHHHHHHHHCCCHHHHHC--CHH
Q ss_conf 57999996699899997614---6231---2345799999761553899842--799
Q gi|254780812|r 5 KQKILEVLQGNVINPPPIWL---MRQA---GRYLPEYRQIRKKFKNFLDMCY--TPE 53 (346)
Q Consensus 5 ~~~~l~al~g~~~~r~PVW~---MrQA---Grylpey~~~r~~~~~f~~~~~--~pe 53 (346)
++.|++-++.- +.++|. |.++ |||+||+..++..++ +|+.| |+|
T Consensus 408 ~~~Fl~ll~~~---~~~~~~l~~Mn~~GvLgR~lPef~~I~g~mQ--fdlfH~YTVD 459 (903)
T TIGR01693 408 REKFLELLTSG---NAIVRALRAMNRAGVLGRFLPEFGRIVGQMQ--FDLFHVYTVD 459 (903)
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHCCCHHHHCCCCCCCCCCCC--CCCEEEEECH
T ss_conf 89999986078---6278999986421602341343345037887--5762554102
No 282
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=36.62 E-value=32 Score=15.43 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=68.7
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHH----CCCCEEE
Q ss_conf 3013722289999999999999977777549816784-3831100683567776127226899998630----8862360
Q gi|254780812|r 169 FAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEHEFENYAARSVGRIISAVRRK----YPNAKFI 243 (346)
Q Consensus 169 ~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~----~~~vpiI 243 (346)
-+|.+|+.+.++.+.+-. .+++|++.+ |-+.-|.-.+. --+.-..-+++|-+.++++ ++++|+.
T Consensus 178 ~~yTdPeea~~fv~~tG~----------~~~vD~LAvaiGt~HG~Yk~g-~~~L~~~~L~~i~~~v~~~~~~~~~~vpLV 246 (340)
T cd00453 178 ALYTQPEDVDYAYTELSK----------ISPRFTIAASFGNVHGVYKKG-NVVLTPTILRDSQEYVSKKHNLPHNSLNFV 246 (340)
T ss_pred CCCCCHHHHHHHHHHHCC----------CCCCCEEEEEECCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 455898999999998668----------888615776404455566899-985798999999999999738888887457
Q ss_pred CCCCCCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HHH---CCCE--EEECC-----------CCHHHHC-CCHHHH
Q ss_conf 2431100001342014--78722304677998999---970---7984--69688-----------8846770-998899
Q gi|254780812|r 244 SFAKGAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LEL---QKEG--PVQGN-----------LDPMRLV-VGNQVM 301 (346)
Q Consensus 244 ~f~~g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~~---~~~~--~lqGN-----------ldP~~L~-~~~e~i 301 (346)
.| +|++.-.+++.+. .|+.=+.+|...-+... |+. .++. ..-|| +||...+ ...+.+
T Consensus 247 lH-GgSGvp~e~i~~ai~~GV~KiNIdTdlq~Aft~~vr~~~~~np~~~~~~~g~~~~~~~~~kk~fDPRk~l~~a~~am 325 (340)
T cd00453 247 FH-GGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSM 325 (340)
T ss_pred EE-CCCCCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 41-78899999999999829653235608899999999999985916440445786444577778789568769999999
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999997325
Q gi|254780812|r 302 IDGVNAILDVLGS 314 (346)
Q Consensus 302 ~~~~~~~l~~~~~ 314 (346)
.+.++.-++.++.
T Consensus 326 ~~~v~~~~~~~gs 338 (340)
T cd00453 326 IARLEKAFQELNA 338 (340)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998379
No 283
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=36.51 E-value=33 Score=15.34 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=67.7
Q ss_pred HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCC-C-----CCCH----HHHHCCC
Q ss_conf 777775498167843831100683567776127226899998630886236-024311-0-----0001----3420147
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKF-ISFAKG-A-----GYML----KNYRRLT 260 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g-~-----~~~l----~~~~~~~ 260 (346)
+...+++|+|++ +||+..++..- +-+++.+++ .++.|+ +.|+.. . +..+ ..+.+..
T Consensus 151 i~~l~~~gvD~i-l~ET~~~~~E~-----------~~~~~~~~~-~~~~pv~~s~t~~~~~~l~~G~~l~~a~~~~~~~~ 217 (308)
T PRK09485 151 IEALLDAGADLL-ALETIPNLDEA-----------EALVELLKE-FPQVPAWLSFTLRDGTHISDGTPLAEAAAALAAYP 217 (308)
T ss_pred HHHHHHCCCCEE-EEEECCCHHHH-----------HHHHHHHHH-CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 999972789889-99603999999-----------999999985-57996899999768984189991999999997378
Q ss_pred CCCEEECCCCCCHHHH-------HHH-CCCEEEECC----CCHHH----H-CCCHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 8722304677998999-------970-798469688----88467----7-09988999999999997325992896089
Q gi|254780812|r 261 DSNAIGLDWSVPLSFA-------LEL-QKEGPVQGN----LDPMR----L-VVGNQVMIDGVNAILDVLGSGPFIFNLGH 323 (346)
Q Consensus 261 g~d~isiD~~~dl~~a-------~~~-~~~~~lqGN----ldP~~----L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGh 323 (346)
.++++++.- .+.+.. ++. ...+.++-| .||.. . -.+++...+.+++.++.+.. |..==|
T Consensus 218 ~v~~vGiNC-~~p~~~~~~l~~l~~~~~~pi~~yPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~w~~~Ga~---iiGGCC 293 (308)
T PRK09485 218 QVVAVGINC-TAPELVTPAIATLKAVTDKPLIVYPNSGEVYDAVTKTWHGPREFSATLAEQAPEWLAAGAR---LIGGCC 293 (308)
T ss_pred CCCEEEECC-CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE---EEEECC
T ss_conf 853686317-8999999999999970697799993899988975556678988999999999999987991---998886
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 7633668899999999997
Q gi|254780812|r 324 GITPQVDPKNVLDLVKTVR 342 (346)
Q Consensus 324 Gi~p~tp~eNv~~~v~~vr 342 (346)
| |.||+|+++-+++|
T Consensus 294 G----t~P~hI~ala~~lk 308 (308)
T PRK09485 294 R----TTPEDIAALAAALK 308 (308)
T ss_pred C----CCHHHHHHHHHHHC
T ss_conf 8----99999999999749
No 284
>PRK13946 shikimate kinase; Provisional
Probab=36.07 E-value=33 Score=15.30 Aligned_cols=168 Identities=15% Similarity=0.203 Sum_probs=72.5
Q ss_pred HHCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 21024-53201111479999999961246776524677530137222899999999999999777775498167843831
Q gi|254780812|r 131 RKKLP-NHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTH 209 (346)
Q Consensus 131 k~~l~-~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ 209 (346)
+..|+ +++-||||.|+==|...-. ..+.+.+-+-| .+++++.- .|..+=.||+.
T Consensus 15 ~~~l~kknIvLIG~mGsGKStvGk~--------LA~~L~~~fiD---~D~~IE~~-------------~g~sI~eIF~~- 69 (195)
T PRK13946 15 RAALGKRTVVLVGLMGAGKSTVGRR--------LATMLGLPFLD---ADTEIERA-------------ARMTIPEIFAT- 69 (195)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHH--------HHHHHCCCEEE---CHHHHHHH-------------HCCCHHHHHHH-
T ss_conf 9985899589989999988999999--------99997979898---85999998-------------09989999998-
Q ss_pred HHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCC-CCCCEEECCCCCCHHHHHH-HCC--CEEE
Q ss_conf 10068356777612722689999863088623602431100001342014-7872230467799899997-079--8469
Q gi|254780812|r 210 AGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRL-TDSNAIGLDWSVPLSFALE-LQK--EGPV 285 (346)
Q Consensus 210 ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~-~g~d~isiD~~~dl~~a~~-~~~--~~~l 285 (346)
-+.+.|++.-...++++.+ .. + -||-..+|+-..-+.+..+ ...-++-++ .+++...+ +.. ..++
T Consensus 70 ---~GE~~FR~~E~~~l~~l~~----~~-~-~VIstGGG~v~~~~n~~~L~~~g~vI~L~--~~~e~l~~Rl~~~~~RPL 138 (195)
T PRK13946 70 ---YGEPEFRDLERRVIARLLK----GG-P-LVLATGGGAFMNEETRAAIREKGISVWLK--ADLDVLWERVSRRDTRPL 138 (195)
T ss_pred ---HCHHHHHHHHHHHHHHHHC----CC-C-EEEECCCCCCCCHHHHHHHHHCCEEEEEE--CCHHHHHHHHCCCCCCCC
T ss_conf ---6979999989999999864----89-8-79975874236899999999579689984--999999999728999998
Q ss_pred ECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 68888467709988999999999997325992896089763366889999999999730
Q gi|254780812|r 286 QGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSE 344 (346)
Q Consensus 286 qGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~~ 344 (346)
-.+-|| .+.+++-..+=..-.....++.+.+. .+|.+-++..++.+++|
T Consensus 139 l~~~~~------~~~l~~l~~~R~~lY~~Ad~~I~t~~----~s~~~ia~eIi~~L~~~ 187 (195)
T PRK13946 139 LRTADP------KETLARLMEERYPVYAQADLTVESRD----VPHEVIADEVIEALAAY 187 (195)
T ss_pred CCCCCH------HHHHHHHHHHHHHHHHHCCEEEECCC----CCHHHHHHHHHHHHHHH
T ss_conf 999887------99999999999999997898988998----99999999999999999
No 285
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.03 E-value=34 Score=15.29 Aligned_cols=146 Identities=14% Similarity=0.219 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHH--HHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------
Q ss_conf 7877787642102453-201111479999999--961246776524677530137222899999999999999-------
Q gi|254780812|r 122 PIFQSISILRKKLPNH-ITLIGFCGAPWTVAS--YMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY------- 191 (346)
Q Consensus 122 ~v~eAi~~~k~~l~~~-~pLIGF~GgP~Tlas--YmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y------- 191 (346)
-.+++|+.+++++.+. --+|| +|.=.|... -.++-| -+|. --|-.-.++++.+.+.-+-|
T Consensus 50 ~a~~~i~~l~~~~~~~p~~~iG-aGTV~~~e~~~~a~~aG--A~Fi-------VSP~~~~~v~~~a~~~~i~~iPG~~Tp 119 (209)
T PRK06552 50 FASEVIKELVERYKDDPEVLIG-AGTVLDAVTARQAILAG--AQFI-------VSPSFNRETAKICNRYQIPYLPGCMTV 119 (209)
T ss_pred CHHHHHHHHHHHHCCCCCEEEE-EECCCCHHHHHHHHHCC--CCEE-------ECCCCCHHHHHHHHHCCCCEECCCCCH
T ss_conf 5999999999981779981898-87274899999999859--9889-------769998999999998599641797999
Q ss_pred --HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC-CCCHHHHHCCCCCCEEECC
Q ss_conf --7777754981678438311006835677761272268999986308862360243110-0001342014787223046
Q gi|254780812|r 192 --LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGA-GYMLKNYRRLTDSNAIGLD 268 (346)
Q Consensus 192 --l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~-~~~l~~~~~~~g~d~isiD 268 (346)
+..-.++|++++.+|- |+.+++++.+.+ +.-.|+++++- .+|. ...+.+|.+ .|+.++++.
T Consensus 120 sEi~~A~~~Ga~~vKlFP--A~~~G~~yikal------------~~p~p~~~~~p-tGGV~~~N~~~~l~-aG~~~vgvG 183 (209)
T PRK06552 120 TEIVTALEAGVDIVKLFP--GSTVGPSFISAI------------KGPLPQVNIMV-TGGVSLDNVKDWFA-AGADAVGIG 183 (209)
T ss_pred HHHHHHHHCCCCEEEECC--HHHCCHHHHHHH------------HCCCCCCCEEE-CCCCCHHHHHHHHH-CCCCEEEEC
T ss_conf 999999986999588583--332489999998------------66489992886-38999888999998-799889986
Q ss_pred CCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 7799899997079846968888467709988999999999997
Q gi|254780812|r 269 WSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDV 311 (346)
Q Consensus 269 ~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~ 311 (346)
+..- .|. --+++++|.+.+++.+++
T Consensus 184 s~l~-----------------~~~-~~~d~~~I~~~A~~~v~a 208 (209)
T PRK06552 184 GELN-----------------KLA-SQGDYDLITEKAAKYIKS 208 (209)
T ss_pred HHHC-----------------CCH-HCCCHHHHHHHHHHHHHH
T ss_conf 5770-----------------825-418999999999999972
No 286
>TIGR03617 F420_MSMEG_2256 probable F420-dependent oxidoreductase, MSMEG_2256 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by MSMEG_2256 from Mycobacterium smegmatis.
Probab=35.69 E-value=34 Score=15.25 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=33.6
Q ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 677099889999999999973259928960897633668899999999997
Q gi|254780812|r 292 MRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVR 342 (346)
Q Consensus 292 ~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr 342 (346)
..+.|+++++.+..++..+.+.+. .++-. +....+|-+++++|+.|
T Consensus 272 ~~~~Gtpee~~~rl~~~~~~GvD~-i~l~~----p~~~~~e~~~~~~~~~~ 317 (318)
T TIGR03617 272 FAVVGPPEELAAALRARFGGLADR-VSLYF----PYPPGPEFVRALLDALR 317 (318)
T ss_pred HCCCCCHHHHHHHHHHHHHCCCCE-EEEEC----CCCCCHHHHHHHHHHHC
T ss_conf 614458999999999999679998-99968----99988689999999853
No 287
>PRK05282 peptidase E; Validated
Probab=35.62 E-value=34 Score=15.25 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=4.7
Q ss_pred CCCEEEECCC
Q ss_conf 7984696888
Q gi|254780812|r 280 QKEGPVQGNL 289 (346)
Q Consensus 280 ~~~~~lqGNl 289 (346)
++++.+.|+-
T Consensus 200 g~~~~L~G~~ 209 (233)
T PRK05282 200 GGKATLGGPN 209 (233)
T ss_pred CCEEEEECCC
T ss_conf 8989995687
No 288
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=35.37 E-value=34 Score=15.22 Aligned_cols=33 Identities=6% Similarity=0.034 Sum_probs=19.7
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 83567776127226899998630886236024311
Q gi|254780812|r 214 GEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG 248 (346)
Q Consensus 214 s~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g 248 (346)
..++|.++-...++-+.+.+++. |+|++.=++|
T Consensus 313 ~de~yl~~Ri~qv~yl~~~L~~~--GVPvv~P~GG 345 (459)
T PRK13237 313 VQDDYIRHRIGQVRYLGEKLLAA--GVPIVEPVGG 345 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHC--CCCEECCCCC
T ss_conf 36799998899999999999987--9970368985
No 289
>pfam02341 RcbX RbcX protein. The RBCX protein has been identified as having a possible chaperone-like function. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RuBisCO in Anabaena sp. CA. RbcX has been shown to possess a chaperone-like function assisting correct folding of RuBisCO in E. coli expression studies and is needed for RuBisCO to reach its maximal activity.
Probab=35.20 E-value=35 Score=15.20 Aligned_cols=75 Identities=13% Similarity=0.228 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH---HHHHHHHHHHHHHHHC
Q ss_conf 7877787642102453201111479999999961246776524677530137222899999---9999999997777754
Q gi|254780812|r 122 PIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLD---FLSDVSAEYLIAQIHA 198 (346)
Q Consensus 122 ~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~---~lt~~~~~yl~~Qi~a 198 (346)
+-|+|++.+-.+|..--|=- + .=|..|...++....-.-...++.++|+++.++|. -+++-+.+|+-.++.+
T Consensus 17 lTYqAvrtVl~QL~EtNP~~----~-~WL~~Fsa~~~iqDGe~fl~~L~~E~~eLa~RImtvReHlae~v~~flpemvr~ 91 (108)
T pfam02341 17 LTYQAVRTVLDQLSETNPPL----A-IWLHQFSASGKIQDGEAYLEELLLENPELALRIMTVREHLAEEVADFLPEMVRT 91 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHH----H-HHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999986258688----7-799988513898568999999986699999999999999999999885999999
Q ss_pred CCC
Q ss_conf 981
Q gi|254780812|r 199 GVD 201 (346)
Q Consensus 199 Gad 201 (346)
|.+
T Consensus 92 ~iq 94 (108)
T pfam02341 92 GIQ 94 (108)
T ss_pred HHH
T ss_conf 898
No 290
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=34.81 E-value=35 Score=15.16 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=46.0
Q ss_pred EEECCCCCCC-CCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCEEEECCC--CHHHHCCCHHHHHHHHHHHHHHHCCCC-
Q ss_conf 3602431100-001342014787223046779989999707984696888--846770998899999999999732599-
Q gi|254780812|r 241 KFISFAKGAG-YMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNL--DPMRLVVGNQVMIDGVNAILDVLGSGP- 316 (346)
Q Consensus 241 piI~f~~g~~-~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lqGNl--dP~~L~~~~e~i~~~~~~~l~~~~~~~- 316 (346)
.|..+-+|.. ..+..+.+ -|+++.-+-|..+.++.....++..+.-|= ||..+...- +.+++++ ++.|
T Consensus 169 ~V~viD~GvK~nIlr~L~~-rg~~V~VvP~~~~~~~i~~~~pDGiflSNGPGDP~~~~~~i----~~vr~l~---~~~Pi 240 (356)
T PRK12838 169 HVALIDFGLKHSILRSLSK-RGCNVTVLPYNASLEDIKNLNPDGIVLSNGPGDPKELQPYL----PTIKDLA---SSYPI 240 (356)
T ss_pred EEEEEECCCHHHHHHHHHH-CCCEEEEECCCCCCCHHHCCCCCEEEECCCCCCHHHHHHHH----HHHHHHH---CCCCE
T ss_conf 7999958836999999997-89889998998875402324974899438998968878899----9999997---49888
Q ss_pred CEEEECCCCC
Q ss_conf 2896089763
Q gi|254780812|r 317 FIFNLGHGIT 326 (346)
Q Consensus 317 ~I~nLGhGi~ 326 (346)
|=-.|||-++
T Consensus 241 fGICLGHQll 250 (356)
T PRK12838 241 LGICLGHQLI 250 (356)
T ss_pred EEECHHHHHH
T ss_conf 9974889999
No 291
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=34.74 E-value=35 Score=15.15 Aligned_cols=185 Identities=15% Similarity=0.185 Sum_probs=97.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC----CCEEEE
Q ss_conf 4210245320111147999999996124677652467753013722289999999999999977777549----816784
Q gi|254780812|r 130 LRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG----VDVIQI 205 (346)
Q Consensus 130 ~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG----ad~iqI 205 (346)
-|++.++...+---+.||+-|..-... ... +..++..+...+-+|++.-+++- +-+|.|
T Consensus 103 yke~~g~tl~VRVCVtGP~eLY~~~FG---~t~--------------y~Di~~~lA~sV~rFi~~A~k~aknf~i~~isi 165 (343)
T PRK06052 103 YKEETGETLEVRVCVTGPTELYLQEFG---GTR--------------YTDIYLILAKSVERFIRNAFKSAKNFKIAVISI 165 (343)
T ss_pred HHHHCCCCCCEEEEECCCHHHHHHHHC---CCH--------------HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 888508855079994482799999848---820--------------899999999999999999986522772599974
Q ss_pred CCCCHHHCCHHHHHHHHCCCHHHHHHHH-------HHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHH---
Q ss_conf 3831100683567776127226899998-------630886236024311000013420147872230467799899---
Q gi|254780812|r 206 FDTHAGCLGEHEFENYAARSVGRIISAV-------RRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSF--- 275 (346)
Q Consensus 206 FDs~ag~Ls~~~f~~f~~p~~kkI~~~i-------k~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~--- 275 (346)
=+++-|+=+.-+|.+ ..|+.++ ++.+.++-|-.|+ ...++..++ +.+++||+.+--+.+.
T Consensus 166 DEPSlG~np~i~fse------~~Ii~AL~~as~~a~k~g~DvqIHLHS---Pl~Y~~~ce-tpInVIG~E~A~~Psyldl 235 (343)
T PRK06052 166 DEPSLGINPEIQFSE------AEIISALTVASKYARKQGADVEIHLHS---PLYYELICE-TPINVIGVESAGTPSYLDL 235 (343)
T ss_pred CCCCCCCCCCCCCCH------HHHHHHHHHHHHHHHHCCCCEEEEECC---HHHHHHHHC-CCCEEEEEECCCCCHHHHH
T ss_conf 787778996568588------899999999999887438834899537---277777622-6511687620689278888
Q ss_pred --HHHHCC-CEE------------EEC--------CC--CH----HHH--CCCHHHHHHHHHHHHHHHCCC-CCEEEECC
Q ss_conf --997079-846------------968--------88--84----677--099889999999999973259-92896089
Q gi|254780812|r 276 --ALELQK-EGP------------VQG--------NL--DP----MRL--VVGNQVMIDGVNAILDVLGSG-PFIFNLGH 323 (346)
Q Consensus 276 --a~~~~~-~~~------------lqG--------Nl--dP----~~L--~~~~e~i~~~~~~~l~~~~~~-~~I~nLGh 323 (346)
.+.+-+ +.. +.| |. |+ ..+ +.+++.|++..++..+.+++. .| .+..|
T Consensus 236 iDkkvled~d~flR~GVaRTDI~sli~~~ne~y~~N~Wk~~eyl~~iv~elEtpe~IkkRLe~Ay~~fGdrikY-~gPDC 314 (343)
T PRK06052 236 IDKKVLEDSDTFLRLGVARTDIFSLIGILNEKYGTNAWKEKEYLQKIVTELETPEVIKKRLETAYSRFGDLIKY-AGPDC 314 (343)
T ss_pred HHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCC
T ss_conf 71998850131203140277599999999887464411348889999971478899999999999998556641-48997
Q ss_pred CCCCCCCH-------HHHHHHHHHHH
Q ss_conf 76336688-------99999999997
Q gi|254780812|r 324 GITPQVDP-------KNVLDLVKTVR 342 (346)
Q Consensus 324 Gi~p~tp~-------eNv~~~v~~vr 342 (346)
|+...-+. +|+..=|++-|
T Consensus 315 GL~swP~QelAf~lL~N~akgi~~f~ 340 (343)
T PRK06052 315 GLGSWPDQELAFRLLENVAKGINEFR 340 (343)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 76778638899999999999999986
No 292
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=34.10 E-value=36 Score=15.08 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHH
Q ss_conf 89999999999999977777549816784383110068356777612722689999863088623602431100001342
Q gi|254780812|r 177 FNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNY 256 (346)
Q Consensus 177 ~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~ 256 (346)
.|.-|..|+..++ .+.+++|.-++.++=+... -.--++...|+..|.+.+++- =+|++| ++. . +
T Consensus 75 ~~~am~~L~~~V~---~~l~~~Gv~av~~~P~s~~----~~~gr~~~~~l~~i~~~l~~g--fvPvl~--GDV---v--~ 138 (252)
T COG1608 75 THLAMLELNSIVV---DALLDAGVRAVSVVPISFS----TFNGRILYTYLEAIKDALEKG--FVPVLY--GDV---V--P 138 (252)
T ss_pred HHHHHHHHHHHHH---HHHHHCCCCCCCCCCCCEE----ECCCCEEECHHHHHHHHHHCC--CEEEEE--CCE---E--E
T ss_conf 9999999999999---9998669853222686403----317703220299999998769--876233--346---8--7
Q ss_pred HCCCCCCEEECCCCCCHHHHHHHCCCEEEEC-----CC--CHH---------------HHCCCH-----HHHHHHHHHHH
Q ss_conf 0147872230467799899997079846968-----88--846---------------770998-----89999999999
Q gi|254780812|r 257 RRLTDSNAIGLDWSVPLSFALELQKEGPVQG-----NL--DPM---------------RLVVGN-----QVMIDGVNAIL 309 (346)
Q Consensus 257 ~~~~g~d~isiD~~~dl~~a~~~~~~~~lqG-----Nl--dP~---------------~L~~~~-----e~i~~~~~~~l 309 (346)
.+..|+.++|=|.-+ +.-|+++.++.++-+ =+ ||. .+-++. --+.+.++.++
T Consensus 139 d~~~g~~IiSGDdIv-~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~ 217 (252)
T COG1608 139 DDDNGYEIISGDDIV-LHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALL 217 (252)
T ss_pred CCCCCEEEEECCHHH-HHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 489854898511899-9999974987799984578235689874866200014432343068676213133999999999
Q ss_pred HHHCC-CC-CEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 97325-99-28960897633668899999999
Q gi|254780812|r 310 DVLGS-GP-FIFNLGHGITPQVDPKNVLDLVK 339 (346)
Q Consensus 310 ~~~~~-~~-~I~nLGhGi~p~tp~eNv~~~v~ 339 (346)
+..+. .+ ||||- -.+||+..++.
T Consensus 218 ~~~~~~~~vyi~ng-------~~~~ni~~~l~ 242 (252)
T COG1608 218 EIARYGKEVYIFNG-------NKPENIYRALR 242 (252)
T ss_pred HHHHCCCEEEEECC-------CCHHHHHHHHC
T ss_conf 98735863899878-------77778999965
No 293
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=33.98 E-value=36 Score=15.07 Aligned_cols=10 Identities=30% Similarity=0.424 Sum_probs=5.7
Q ss_pred CCCEEECCCC
Q ss_conf 8722304677
Q gi|254780812|r 261 DSNAIGLDWS 270 (346)
Q Consensus 261 g~d~isiD~~ 270 (346)
+++++=+|+-
T Consensus 205 ~~~~IrlD~~ 214 (281)
T cd00516 205 GADGIRLDSG 214 (281)
T ss_pred CCCEEEECCC
T ss_conf 9999997979
No 294
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=33.74 E-value=36 Score=15.04 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=16.2
Q ss_pred EEEECCCCHH---HCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCC
Q ss_conf 6784383110---06835677761272268999986308862360243110000
Q gi|254780812|r 202 VIQIFDTHAG---CLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYM 252 (346)
Q Consensus 202 ~iqIFDs~ag---~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~ 252 (346)
+.-+.++.|| .+.. .|+++ .+|++.+... .-+.+|=++.|.
T Consensus 134 ~~lllEntAGqG~~lG~-~~eeL-----~~ii~~~~~~----~rvgvClDTcH~ 177 (273)
T smart00518 134 VVILLETTAGKGSQIGS-TFEDL-----KEIIDLIKEL----DRIGVCIDTCHI 177 (273)
T ss_pred CEEEEECCCCCCCCCCC-CHHHH-----HHHHHHCCCC----CCEEEEEECHHH
T ss_conf 67997457899884686-89999-----9999973784----653787520202
No 295
>PRK13238 tnaA tryptophanase; Provisional
Probab=33.64 E-value=36 Score=15.03 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=19.3
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 83567776127226899998630886236024311
Q gi|254780812|r 214 GEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG 248 (346)
Q Consensus 214 s~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g 248 (346)
..++|.+|-....+-+.+.+++. |+|++.=++|
T Consensus 314 ~d~dyl~~Ri~qv~yLg~~L~~~--GVPvv~P~GG 346 (461)
T PRK13238 314 MDEDYLAYRIAQVEYLGEGLEEA--GVPVVTPAGG 346 (461)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHC--CCCEECCCCC
T ss_conf 07799997799999999999977--9970567985
No 296
>pfam07555 NAGidase beta-N-acetylglucosaminidase. This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity.
Probab=33.34 E-value=37 Score=15.00 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHHH---H---HHHHCCCHHHHHHHHHHHCCC----
Q ss_conf 13722289999999999999977777549816784-383110068356---7---776127226899998630886----
Q gi|254780812|r 171 YQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEHE---F---ENYAARSVGRIISAVRRKYPN---- 239 (346)
Q Consensus 171 ~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~~---f---~~f~~p~~kkI~~~ik~~~~~---- 239 (346)
++.++....|+.|+..+ .+.|+..+.| ||--.+.+.... | -+--...++++.+++.+...+
T Consensus 84 ~~~~~d~~~L~~K~~ql--------~~~Gvr~failfDDI~~~~~~~~~~~~~~~~~~qa~l~n~v~~~l~~~~~~~~~l 155 (306)
T pfam07555 84 YSSEEDLQALLAKFEQL--------YDLGVRSFAVLFDDIEYTLWNADKRRFGSFAEAQADLLNKVQKEFIKPKGDVYPL 155 (306)
T ss_pred CCCHHHHHHHHHHHHHH--------HHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 37899999999999999--------9749998999721687544654211134179999999999999986406888855
Q ss_pred --CEEECCCCCCCC-CHHHHHC---------CCCCCEEECCC-CCCHHHHHH-HCCCEEEECCC
Q ss_conf --236024311000-0134201---------47872230467-799899997-07984696888
Q gi|254780812|r 240 --AKFISFAKGAGY-MLKNYRR---------LTDSNAIGLDW-SVPLSFALE-LQKEGPVQGNL 289 (346)
Q Consensus 240 --vpiI~f~~g~~~-~l~~~~~---------~~g~d~isiD~-~~dl~~a~~-~~~~~~lqGNl 289 (346)
||..|...+.+. .+..+.+ .||..++|-.- ..+++.+++ ++.+.++==|.
T Consensus 156 ~~cPt~Y~~~~~~~~Yl~~l~~~Ld~~I~V~WTG~~VvS~~it~~~~~~~~~~~~r~~~iWDNy 219 (306)
T pfam07555 156 IFCPTEYNGSWASPDYLQTLGETLDPDIDIMWTGDRVVSGEITVEDAEEVSEVLGRKPFIWDNY 219 (306)
T ss_pred EEECHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCEECCCCCHHHHHHHHHHHCCCCEEEECC
T ss_conf 8969323378999799999986489986599448964588669999999999848998699673
No 297
>pfam08610 Pex16 Peroxisomal membrane protein (Pex16). Pex16 is a peripheral protein located at the matrix face of the peroxisomal membrane.
Probab=33.14 E-value=22 Score=16.51 Aligned_cols=34 Identities=6% Similarity=0.276 Sum_probs=23.5
Q ss_pred HCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 0683567776127226899998630886236024311
Q gi|254780812|r 212 CLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG 248 (346)
Q Consensus 212 ~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g 248 (346)
++-.-.|++|..+-+..+...+.+ .+|++.+.++
T Consensus 253 lmRsPFyd~~Tr~~i~~~l~~l~~---~vPl~glv~~ 286 (298)
T pfam08610 253 LMRGPFYDNYTKSKLESLLRRLEN---HVPLLGLVGR 286 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC---CCCCHHHHHH
T ss_conf 986689887579999999999734---7983368788
No 298
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244 This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=33.04 E-value=37 Score=14.97 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHH
Q ss_conf 432378777876421024--53201111479999999
Q gi|254780812|r 118 NYLLPIFQSISILRKKLP--NHITLIGFCGAPWTVAS 152 (346)
Q Consensus 118 ~~l~~v~eAi~~~k~~l~--~~~pLIGF~GgP~Tlas 152 (346)
..|.|+.+-++.+|++.+ +++-|=||. |-=+..
T Consensus 71 ssl~yy~~l~~~Ik~~~pPyG~~hiHafS--p~Ev~f 105 (331)
T TIGR00423 71 SSLEYYEELFRAIKQEFPPYGDVHIHAFS--PMEVYF 105 (331)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEECCC--HHHHHH
T ss_conf 14999999999997417896524761468--689999
No 299
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative; InterPro: IPR010962 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry contains a number of enzyme families: Serine palmitoyltransferase Glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 5-aminolevulinic acid synthase 8-amino-7-oxononanoate synthase All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.; GO: 0016740 transferase activity, 0030170 pyridoxal phosphate binding.
Probab=32.98 E-value=37 Score=14.96 Aligned_cols=52 Identities=29% Similarity=0.485 Sum_probs=32.7
Q ss_pred CCEEEE-CCCCHHH-HCC----CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 984696-8888467-709----98899999999999732599289608976336688999999999973
Q gi|254780812|r 281 KEGPVQ-GNLDPMR-LVV----GNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 281 ~~~~lq-GNldP~~-L~~----~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~ 343 (346)
+++.+| |-|+=.. ..| +++++++..++ +.+||.||+. .||--+.|+++||..
T Consensus 228 ~~v~~qvGTLSKA~GvvGGY~AG~~~lidyL~~-----~aRPFLFSta------~~Pa~~~A~~~Av~~ 285 (392)
T TIGR01825 228 DKVDIQVGTLSKAIGVVGGYVAGSKELIDYLKA-----RARPFLFSTA------LPPAVVAALIEAVDV 285 (392)
T ss_pred CCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHH-----CCCCCCCCCC------CCHHHHHHHHHHHHH
T ss_conf 646788555223222566423488899999986-----2898601257------880789999999998
No 300
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=32.85 E-value=38 Score=14.95 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=65.0
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHCCHHHHH-HHHCCCHHHHHHHHHHHC---CCC--
Q ss_conf 53013722289999999999999977777549816784-38311006835677-761272268999986308---862--
Q gi|254780812|r 168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQI-FDTHAGCLGEHEFE-NYAARSVGRIISAVRRKY---PNA-- 240 (346)
Q Consensus 168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqI-FDs~ag~Ls~~~f~-~f~~p~~kkI~~~ik~~~---~~v-- 240 (346)
.-+|.+|+.+.++.+.. ...+|+|++.+ |-+.-|.-.+.... ++ .-..++.+.++++. .++
T Consensus 179 ~~~yT~Peea~~f~~~~----------~~~tgvd~LAvaiGt~HG~Yk~g~~kL~p--~ll~~~~~~i~~~~~~~~~~pi 246 (345)
T cd00946 179 AELYTQPEDVWYVYEAL----------SKISPNFSIAAAFGNVHGVYKPGNVKLQP--EILGEHQDYVREKLGLADDKPL 246 (345)
T ss_pred HHCCCCHHHHHHHHHHH----------CCCCCCCEEEEEECCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCC
T ss_conf 21279999999999996----------36777605655311245434688888882--6778899999999566667873
Q ss_pred EEECCCCCCCCCHHHHHCC--CCCCEEECCCCCCHHHH---HH-H--CCCE--EEEC-----------CCCHHHHC-CCH
Q ss_conf 3602431100001342014--78722304677998999---97-0--7984--6968-----------88846770-998
Q gi|254780812|r 241 KFISFAKGAGYMLKNYRRL--TDSNAIGLDWSVPLSFA---LE-L--QKEG--PVQG-----------NLDPMRLV-VGN 298 (346)
Q Consensus 241 piI~f~~g~~~~l~~~~~~--~g~d~isiD~~~dl~~a---~~-~--~~~~--~lqG-----------NldP~~L~-~~~ 298 (346)
|+..| +|++.-.+++.+. .|+.=+.+|...-+... |+ + .++. .--| .+||...+ ...
T Consensus 247 pLVLH-GgSGvp~e~i~~AI~~GV~KINI~Tdlr~Aft~air~~~~~~~d~~~~~~g~p~~~~~pn~k~fDPRk~l~~a~ 325 (345)
T cd00946 247 YFVFH-GGSGSTKEEIREAISYGVVKMNIDTDTQWAYWEGVRNYYLKNEDYLQGQIGNPEGPDKPNKKYYDPRVWLREGE 325 (345)
T ss_pred EEEEC-CCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 07851-89999999999999839563345708899999999999984704440245886555788767789578779999
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 899999999999732599
Q gi|254780812|r 299 QVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 299 e~i~~~~~~~l~~~~~~~ 316 (346)
+.+++-+++-++.++..+
T Consensus 326 ~am~~~v~~k~~~~gs~g 343 (345)
T cd00946 326 KSMVARVKKAFEDLNSVN 343 (345)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999999999818999
No 301
>pfam01702 TGT Queuine tRNA-ribosyltransferase. This is a family of queuine tRNA-ribosyltransferases EC:2.4.2.29, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine. It catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues.
Probab=32.65 E-value=38 Score=14.93 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=17.1
Q ss_pred CCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf 623602431100001342014787223046779989999
Q gi|254780812|r 239 NAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFAL 277 (346)
Q Consensus 239 ~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~ 277 (346)
+.|...+..|.-..+..... .|+|. +|...+-..|+
T Consensus 113 ~kPr~l~G~g~P~~i~~~v~-~GiD~--FD~~~ptr~Ar 148 (238)
T pfam01702 113 DKPRYLMGVGTPEDILEAVA-LGVDM--FDCVFPTRYAR 148 (238)
T ss_pred CCCEEECCCCCHHHHHHHHH-HCCCC--EECCCHHHHHH
T ss_conf 78564069999999999999-58881--00341379984
No 302
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=32.53 E-value=25 Score=16.14 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=32.5
Q ss_pred HHHHHHHCCCCCCCCCCH-HHHHC---CCCCHHHHHHHHHCCCHHHHHC--CHHHHHHHHHHHHHHC
Q ss_conf 799999669989999761-46231---2345799999761553899842--7999999872128762
Q gi|254780812|r 6 QKILEVLQGNVINPPPIW-LMRQA---GRYLPEYRQIRKKFKNFLDMCY--TPEYTVELTLQPIRRY 66 (346)
Q Consensus 6 ~~~l~al~g~~~~r~PVW-~MrQA---Grylpey~~~r~~~~~f~~~~~--~pela~evtl~p~~r~ 66 (346)
+.|+..++... .-.++| .|.+. |||+||+..++..++ +|+.| |++-=+=-++.-+++|
T Consensus 412 ~~Fl~iL~~~~-~~~~~Lr~M~~~GvLg~~iPef~~I~g~mQ--fD~yH~YTVDeHtl~~v~~L~~~ 475 (894)
T PRK00275 412 SLFIELFKCPH-GIHRNLRRMNRYGILGRYLPEFGHIVGQMQ--HDLFHIYTVDAHTLNLIKHLRKL 475 (894)
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHCCCHHHCCCCHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999970888-779999999875973310996776525524--44100261217799999999998
No 303
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=32.41 E-value=38 Score=14.90 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=33.0
Q ss_pred HHHHHHHCCCCCCCCCCH-----HHHHCCCCC-HHHHHHHHHCCCHHHHHCC-HHH--HHHHHHHHHHHCCCCEEEE
Q ss_conf 799999669989999761-----462312345-7999997615538998427-999--9998721287629872652
Q gi|254780812|r 6 QKILEVLQGNVINPPPIW-----LMRQAGRYL-PEYRQIRKKFKNFLDMCYT-PEY--TVELTLQPIRRYNFDAAIL 73 (346)
Q Consensus 6 ~~~l~al~g~~~~r~PVW-----~MrQAGryl-pey~~~r~~~~~f~~~~~~-pel--a~evtl~p~~r~~~DaaIl 73 (346)
.+++++++.+..+ .-+| .|++||--. -++.++- -+ .|.|.-.. |.+ ...-+..-++.+..|++|+
T Consensus 18 a~li~~Lk~~~~~-~~~~GiGG~~M~~~G~~~l~d~~~l~-vm-G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~ 91 (382)
T PRK00025 18 AGLIRALKAQAPN-LEFVGIGGPRMEAAGFESLFDMEELA-VM-GLVEVLPRLPRLLKIRKELKRLLLAEPPDVFIL 91 (382)
T ss_pred HHHHHHHHHHCCC-CEEEEECCHHHHHCCCCCCCCHHHHH-HC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999831989-67999882999976995447757831-30-199999779999999999999998649999999
No 304
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily; InterPro: IPR004799 Periplasmic protein thiol:disulphide oxidoreductase is involved in the biogenesis of c-type cytochromes as well as in disulphide bond formation in some periplasmic proteins. This group defines the DsbE subfamily.; GO: 0015036 disulfide oxidoreductase activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space.
Probab=32.13 E-value=39 Score=14.87 Aligned_cols=21 Identities=0% Similarity=0.040 Sum_probs=11.1
Q ss_pred HCCCCEEEECCCCHHHCCHHH
Q ss_conf 549816784383110068356
Q gi|254780812|r 197 HAGVDVIQIFDTHAGCLGEHE 217 (346)
Q Consensus 197 ~aGad~iqIFDs~ag~Ls~~~ 217 (346)
+.+.-.|.+|=|||.-+-.|+
T Consensus 63 qG~~~LlNVWAsWCp~CraEH 83 (175)
T TIGR00385 63 QGKPVLLNVWASWCPPCRAEH 83 (175)
T ss_pred CCCEEEEEEEECCCCCCHHCC
T ss_conf 896069988403688831000
No 305
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=32.06 E-value=32 Score=15.46 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=31.5
Q ss_pred HHHHHHHCCCCCCCCCCH-HHHHC---CCCCHHHHHHHHHCCCHHHHHC--CHHHHHHHHHHHHHHC
Q ss_conf 799999669989999761-46231---2345799999761553899842--7999999872128762
Q gi|254780812|r 6 QKILEVLQGNVINPPPIW-LMRQA---GRYLPEYRQIRKKFKNFLDMCY--TPEYTVELTLQPIRRY 66 (346)
Q Consensus 6 ~~~l~al~g~~~~r~PVW-~MrQA---Grylpey~~~r~~~~~f~~~~~--~pela~evtl~p~~r~ 66 (346)
++|++-++... .-.++| .|.+. |||+||+.+++..++ +|+.| |++-=+=-++.-+++|
T Consensus 396 ~~F~~il~~p~-~~~~~l~~M~~~GvL~~yiPef~~I~g~mQ--fDlfH~YTVDeHtl~~v~~l~~~ 459 (862)
T PRK01759 396 ERFLRLFNQPN-AIKRALVPMHQYGVLTAYLPQWKHIEGLMQ--FDLFHIYTVDEHTLRVMLKLESF 459 (862)
T ss_pred HHHHHHHCCCC-CHHHHHHHHHHHCCHHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999982988-579999999982878988478887743647--54355784768999999999998
No 306
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=31.92 E-value=39 Score=14.84 Aligned_cols=216 Identities=16% Similarity=0.195 Sum_probs=98.8
Q ss_pred CCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCCCEEEECCCCCCCC
Q ss_conf 97614623123457999997615538998427999999872128762987265213320010432443373168875222
Q gi|254780812|r 20 PPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMD 99 (346)
Q Consensus 20 ~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~~v~f~~~~GP~~~ 99 (346)
+++-+==.||-.-..||.+-..++++ ++|.++-.++...+.+-+.+-.+- ...++..|+.=
T Consensus 11 ~~~~lAPM~gvtd~~fR~l~~~~ga~-~l~~TEmv~~~~~~~~~~~~~~~~------------------~~~~~e~p~~v 71 (323)
T COG0042 11 NRVILAPMAGVTDLPFRRLARELGAY-DLLYTEMVSAKALLHGRKKFLLLL------------------DELEEERPVAV 71 (323)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHCCC-CEEEEEEEECCHHHCCCHHHHHCC------------------CCCCCCCCEEE
T ss_conf 87788348898668999999995887-528974045304552770044305------------------64566787799
Q ss_pred CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 33333554205670123443237877787642102453201111479999999961246776524677530137222899
Q gi|254780812|r 100 PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNW 179 (346)
Q Consensus 100 p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ 179 (346)
.+.. +......+|.+++-+.-.+.+-| =+|.|--... . ..+-. .+.++|+.+.+
T Consensus 72 Ql~g--------------sdp~~laeaA~~~~~~g~~~IDl--N~GCP~~~V~---~----~g~Ga---~Ll~~p~lv~~ 125 (323)
T COG0042 72 QLGG--------------SDPELLAEAAKIAEELGADIIDL--NCGCPSPKVV---K----GGAGA---ALLKNPELLAE 125 (323)
T ss_pred EECC--------------CCHHHHHHHHHHHHHCCCCEEEE--ECCCCCHHHH---C----CCCCH---HHCCCHHHHHH
T ss_conf 9738--------------99899999999998669998987--6899928980---8----98447---77179899999
Q ss_pred HHHHHHHHH--------------------HHHHHHHHHCCCCEEEECC--CCHHHCCHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 999999999--------------------9997777754981678438--311006835677761272268999986308
Q gi|254780812|r 180 LLDFLSDVS--------------------AEYLIAQIHAGVDVIQIFD--THAGCLGEHEFENYAARSVGRIISAVRRKY 237 (346)
Q Consensus 180 ll~~lt~~~--------------------~~yl~~Qi~aGad~iqIFD--s~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~ 237 (346)
+++.+.+.+ .+.++.--++||+++-|== .|-+-.++.+| ..+..+|+..
T Consensus 126 iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~G~~~ltVHgRtr~~~y~~~a~~---------~~I~~vk~~~ 196 (323)
T COG0042 126 IVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADW---------DYIKELKEAV 196 (323)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCHHCCHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCH---------HHHHHHHHHC
T ss_conf 9999998538887499985787800200999999999679878999556676468986487---------9999999867
Q ss_pred CCCEEECCCC-CCCCCHHHHHCCCCCCEEECCCC--CCHHHHHHHCCCEEEECCCCH
Q ss_conf 8623602431-10000134201478722304677--998999970798469688884
Q gi|254780812|r 238 PNAKFISFAK-GAGYMLKNYRRLTDSNAIGLDWS--VPLSFALELQKEGPVQGNLDP 291 (346)
Q Consensus 238 ~~vpiI~f~~-g~~~~l~~~~~~~g~d~isiD~~--~dl~~a~~~~~~~~lqGNldP 291 (346)
+++|+|.-.- .+......+.+.+|+|.+-+.-- -++.-.+++ +..-.|...|
T Consensus 197 ~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i--~~~~~g~~~~ 251 (323)
T COG0042 197 PSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI--DYLETGELLP 251 (323)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHHHHHH--HHHCCCCCCC
T ss_conf 997598579949999999999841898799743531695575533--5530688788
No 307
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=31.54 E-value=39 Score=14.80 Aligned_cols=59 Identities=12% Similarity=0.186 Sum_probs=29.4
Q ss_pred HCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC--CCEEECCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf 549816784383110068356777612722689999863088--623602431100001342014787223046
Q gi|254780812|r 197 HAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP--NAKFISFAKGAGYMLKNYRRLTDSNAIGLD 268 (346)
Q Consensus 197 ~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~--~vpiI~f~~g~~~~l~~~~~~~g~d~isiD 268 (346)
+.++|+|.+- ..++ ..+|-++++++.+++... ++|++. +|.. .-+++.+..|+|+..-|
T Consensus 131 ~~~~divglS----~~~~------~~~~~~~~~i~~lr~~~~~~~v~i~v--GG~a-~~~~~a~~~GAD~~a~d 191 (201)
T cd02070 131 EHKPDILGLS----ALMT------TTMGGMKEVIEALKEAGLRDKVKVMV--GGAP-VNQEFADEIGADGYAED 191 (201)
T ss_pred HHCCCEEEEE----CCCC------CCHHHHHHHHHHHHHCCCCCCCEEEE--ECCC-CCHHHHHHHCCCEECCC
T ss_conf 7298999996----2566------88999999999999728988985999--8801-79999999298878479
No 308
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=31.24 E-value=20 Score=16.87 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9999999961246776524677530137222899999999999999777775498167
Q gi|254780812|r 146 APWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVI 203 (346)
Q Consensus 146 gP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~i 203 (346)
|.|||+| |.-|.-|...+ .+..+|+..+.+.+.+.+.+.+ .+.|+|
T Consensus 21 G~F~L~S----G~~S~~Y~d~~-~l~~~p~~~~~i~~~~~~~i~~-------~~~d~I 66 (200)
T PRK00455 21 GHFTLSS----GRKSPYYFDCR-KLFNYPEALALLGRFLAEAIKD-------SGIDFV 66 (200)
T ss_pred CCEEECC----CCCCHHHHCCH-HHHHCHHHHHHHHHHHHHHHHH-------CCCCEE
T ss_conf 9688677----47561671888-9886999999999999999754-------499899
No 309
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=31.20 E-value=40 Score=14.76 Aligned_cols=29 Identities=21% Similarity=0.080 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHCC----CCCEEEECCCCC
Q ss_conf 88999999999997325----992896089763
Q gi|254780812|r 298 NQVMIDGVNAILDVLGS----GPFIFNLGHGIT 326 (346)
Q Consensus 298 ~e~i~~~~~~~l~~~~~----~~~I~nLGhGi~ 326 (346)
.+.+.+-.-.+|++++- .-||-..|||=+
T Consensus 487 ~~~~~~laF~ILQAaR~R~sKTEYISCPSCGRT 519 (606)
T PRK00694 487 LSDVRTIAFGTLQSAGVRLVKTEYISCPGCGRT 519 (606)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
T ss_conf 778888888888875744335616658987752
No 310
>pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family.
Probab=31.19 E-value=40 Score=14.76 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=26.4
Q ss_pred HHHHHHCCCCEEEECCCCHH----HCCHHH---HHHH------HCCCHHHHHHHHHHHCC-CCEE
Q ss_conf 77777549816784383110----068356---7776------12722689999863088-6236
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAG----CLGEHE---FENY------AARSVGRIISAVRRKYP-NAKF 242 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag----~Ls~~~---f~~f------~~p~~kkI~~~ik~~~~-~vpi 242 (346)
++.-.+||.|.|+|-=..+- .|||.. =++| =..+..+|++++++..+ +.|+
T Consensus 149 A~rA~~AGfDGVEIh~ahGyLl~QFLSp~~N~RtDeYGGslENR~Rf~~eIi~aIR~~vg~d~~i 213 (336)
T pfam00724 149 AKRAVEAGFDGVEIHGAHGYLLDQFLSPGSNKRTDEYGGSIENRARFPLEVVDAVKEAVGEDRPI 213 (336)
T ss_pred HHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999829998996142678999862876588977678898897548999999999972877664
No 311
>KOG0628 consensus
Probab=31.18 E-value=40 Score=14.76 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCEECCH---------HHCCCEEEE
Q ss_conf 9999998721287629872652133200104---------324433731
Q gi|254780812|r 52 PEYTVELTLQPIRRYNFDAAILFSDILVIAD---------ALGRNVRFV 91 (346)
Q Consensus 52 pela~evtl~p~~r~~~DaaIlFsDIl~~~e---------alG~~v~f~ 91 (346)
|-+.+++.-..+--.||+=+ =|-+++.+| -||+.-+|.
T Consensus 87 ~siladmLs~~i~~vGFtW~--ssPa~TELE~ivmDWL~kml~LP~~Fl 133 (511)
T KOG0628 87 PSILADMLSGGIGCVGFTWA--SSPACTELEVIVMDWLGKMLGLPAEFL 133 (511)
T ss_pred HHHHHHHHHCCCCCCCCEEE--CCCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 77999998500233441242--584067899999999999851809874
No 312
>KOG2673 consensus
Probab=31.02 E-value=28 Score=15.81 Aligned_cols=28 Identities=36% Similarity=0.654 Sum_probs=22.8
Q ss_pred HHHHCCCCCCCCCCHH--HHHCCCCCHHHHH
Q ss_conf 9996699899997614--6231234579999
Q gi|254780812|r 9 LEVLQGNVINPPPIWL--MRQAGRYLPEYRQ 37 (346)
Q Consensus 9 l~al~g~~~~r~PVW~--MrQAGrylpey~~ 37 (346)
+|++-|-..+-+|-|+ ||-+| |=|.|-.
T Consensus 189 ~R~al~l~~~d~P~~~yRMR~lG-YPPg~L~ 218 (485)
T KOG2673 189 TRSALGLSPGDPPEWKYRMRRLG-YPPGYLR 218 (485)
T ss_pred HHHHHCCCCCCCHHHHHHHHHCC-CCCHHHH
T ss_conf 77763589999558888876326-9911200
No 313
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=30.86 E-value=40 Score=14.73 Aligned_cols=14 Identities=7% Similarity=-0.171 Sum_probs=8.9
Q ss_pred CCCCCCEEECCCCC
Q ss_conf 14787223046779
Q gi|254780812|r 258 RLTDSNAIGLDWSV 271 (346)
Q Consensus 258 ~~~g~d~isiD~~~ 271 (346)
...|+|++.+.++.
T Consensus 226 ~~~g~dGvi~tNTt 239 (327)
T cd04738 226 LEHGVDGIIATNTT 239 (327)
T ss_pred HHCCCCEEEEECCC
T ss_conf 97399789995885
No 314
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.67 E-value=41 Score=14.70 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=4.9
Q ss_pred CCCCEEECCCC
Q ss_conf 78722304677
Q gi|254780812|r 260 TDSNAIGLDWS 270 (346)
Q Consensus 260 ~g~d~isiD~~ 270 (346)
.|+|.+=+|+-
T Consensus 218 ~g~d~ImLDNm 228 (288)
T PRK06978 218 HGAQSVLLDNF 228 (288)
T ss_pred CCCCEEEECCC
T ss_conf 89999995799
No 315
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=30.53 E-value=41 Score=14.69 Aligned_cols=46 Identities=7% Similarity=0.044 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf 2722689999863088623602431100001342014787223046
Q gi|254780812|r 223 ARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLD 268 (346)
Q Consensus 223 ~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD 268 (346)
.+...++++.+|+..|+++++.-.-..+..-+.+.+..++|.+-++
T Consensus 52 ~~~~~~~~~~~k~~~p~~~iv~GG~h~t~~p~~~l~~~~~D~vv~G 97 (127)
T cd02068 52 IYEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIG 97 (127)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCEEEEC
T ss_conf 9999999999999789978998598745499999707587789968
No 316
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.43 E-value=41 Score=14.68 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=46.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCC
Q ss_conf 75301372228999999999999997777754981678438311006835677761272268999986308862360243
Q gi|254780812|r 167 RVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFA 246 (346)
Q Consensus 167 ~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~ 246 (346)
..++..+|++..++.- --+.+.+-...|-.+|-|. |+++.|.+|. ++-+.-.+++ |.|.|...
T Consensus 66 l~liraHPdLAgk~a~-a~elta~S~~EQasAGLd~----------Ls~~E~a~f~-----~LN~aY~~rF-gfPfI~aV 128 (176)
T COG3195 66 LALIRAHPDLAGKAAI-AGELTAESTSEQASAGLDR----------LSPEEFARFT-----ELNAAYVERF-GFPFIIAV 128 (176)
T ss_pred HHHHHHCHHHHHHHHH-HHHHHHHHHHHHHHCCCCC----------CCHHHHHHHH-----HHHHHHHHHC-CCCEEEEE
T ss_conf 9998869336778888-7775325477777357443----------8999999999-----9999999853-99648765
Q ss_pred CCCC
Q ss_conf 1100
Q gi|254780812|r 247 KGAG 250 (346)
Q Consensus 247 ~g~~ 250 (346)
||.+
T Consensus 129 kg~~ 132 (176)
T COG3195 129 KGNT 132 (176)
T ss_pred CCCC
T ss_conf 4888
No 317
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=30.19 E-value=41 Score=14.65 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCCCE
Q ss_conf 79999998721287629872652133200104324433
Q gi|254780812|r 51 TPEYTVELTLQPIRRYNFDAAILFSDILVIADALGRNV 88 (346)
Q Consensus 51 ~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~~v 88 (346)
+|++..|++-.-+++.+.|. |..+-+||||..+
T Consensus 30 ~p~~l~~i~~~ii~~~D~~i-----DkIv~iEa~Gipi 62 (184)
T PRK12560 30 RPAVLLEVAHKVIQIIDMDI-----DKIVTEEDKGAPL 62 (184)
T ss_pred CHHHHHHHHHHHHHHCCCCC-----CEEEEHHHCCCHH
T ss_conf 98999999999998616687-----6897413356388
No 318
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=29.83 E-value=42 Score=14.61 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=24.6
Q ss_pred HHH-HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHH
Q ss_conf 432-378777876421024-53201111479999999
Q gi|254780812|r 118 NYL-LPIFQSISILRKKLP-NHITLIGFCGAPWTVAS 152 (346)
Q Consensus 118 ~~l-~~v~eAi~~~k~~l~-~~~pLIGF~GgP~Tlas 152 (346)
+++ ..+.+|+..+++..+ +++-+||+|-|=-++++
T Consensus 161 dYi~e~l~~aid~V~~itg~~dInliGyC~GGt~~~~ 197 (445)
T COG3243 161 DYILEGLSEAIDTVKDITGQKDINLIGYCVGGTLLAA 197 (445)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHH
T ss_conf 9999999999999998747651235546145699999
No 319
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=29.45 E-value=43 Score=14.56 Aligned_cols=73 Identities=10% Similarity=0.081 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC--CCHHHHHCCCCCCE
Q ss_conf 9999977777549816784383110068356777612722689999863088623602431100--00134201478722
Q gi|254780812|r 187 VSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG--YMLKNYRRLTDSNA 264 (346)
Q Consensus 187 ~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~--~~l~~~~~~~g~d~ 264 (346)
.+.++++...++||+.|.|-- --..+.| .-|..-+.+..+++..+ +|+|. .+|.. .....+.+.+|+|.
T Consensus 139 ~~~~~~~~l~~~G~~~itvH~----Rt~~q~~---~g~a~w~~i~~~k~~~~-ipvi~-NGdi~~~~d~~~~l~~tg~dg 209 (309)
T pfam01207 139 NAVEIARRVEDAGAQALTVHG----RTRAQNY---EGPADWDAIKQVKQAVS-IPVIA-NGDITDAEDAQRCLSYTGADG 209 (309)
T ss_pred HHHHHHHHHHHCCCCEEEEEC----CCHHHCC---CCCCCHHHHHHHHHHCC-CCEEE-ECCCCCHHHHHHHHHHHCCCE
T ss_conf 899999999846888799967----6324026---78654189999998589-82898-089488999999986109999
Q ss_pred EECC
Q ss_conf 3046
Q gi|254780812|r 265 IGLD 268 (346)
Q Consensus 265 isiD 268 (346)
+=+.
T Consensus 210 vMig 213 (309)
T pfam01207 210 VMIG 213 (309)
T ss_pred EEEC
T ss_conf 9984
No 320
>TIGR00863 P2X cation transporter protein; InterPro: IPR001429 P2X purinoceptors are cell membrane ion channels, gated by adenosine 5'-triphosphate (ATP) and other nucleotides; they have been found to be widely expressed on mammalian cells, and, by means of their functional properties, can be differentiated into three sub-groups. The first group is almost equally well activated by ATP and its analogue alphabetamethyleneATP, whereas, the second group is not activated by the latter compound. A third type of receptor (also called P2Z) is distinguished by the fact that repeated or prolonged agonist application leads to the opening of much larger pores, allowing large molecules to traverse the cell membrane. This increased permeability rapidly leads to cell death, and lysis. Molecular cloning studies have identified seven P2X receptor subtypes, designated P2X1-P2X7. These receptors are proteins that share 35-48% amino acid identity, and possess two putative transmembrane (TM) domains, separated by a long (~270 residues) intervening sequence, which is thought to form an extracellular loop. Around 1/4 of the residues within the loop are invariant between the cloned subtypes, including 10 characteristic cysteines. Studies of the functional properties of heterologously expressed P2X receptors, together with the examination of their distribution in native tissues, suggests they likely occur as both homo- and heteromultimers in vivo , . This entry represents all P2X purinoreceptor subtypes.; GO: 0004872 receptor activity, 0005216 ion channel activity, 0005524 ATP binding, 0006811 ion transport, 0016020 membrane.
Probab=29.44 E-value=23 Score=16.50 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=32.9
Q ss_pred CCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEEC
Q ss_conf 4311000013420147872230467799899997-079846968
Q gi|254780812|r 245 FAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQG 287 (346)
Q Consensus 245 f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqG 287 (346)
.-+.+++...+|+..-|+=+|.|+|.+||+++.. -.|+..+++
T Consensus 240 ~V~~AG~dF~~lA~~GGv~GI~I~W~CDLD~~~s~C~P~YsF~r 283 (377)
T TIGR00863 240 IVEKAGQDFQDLALKGGVVGITINWDCDLDKAASECNPKYSFRR 283 (377)
T ss_pred HHHHHCHHHHHHHHCCCEEEEEEEEEECCCCHHHCCCCEEEEEC
T ss_conf 98760631798987098888997201276841205875033100
No 321
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=29.42 E-value=33 Score=15.37 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=27.5
Q ss_pred CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCC
Q ss_conf 831100683567776127226899998630886236024311000013420147
Q gi|254780812|r 207 DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLT 260 (346)
Q Consensus 207 Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~ 260 (346)
||-|+ |. ..-+.=++||++++-+++ ++|++|-+ |-+.++..++
T Consensus 157 EPLaa-LD-~~rk~EilPYLerL~~e~-----~iP~lyVS----Hsl~Ev~rLA 199 (361)
T TIGR02142 157 EPLAA-LD-EPRKKEILPYLERLHAEL-----KIPILYVS----HSLDEVARLA 199 (361)
T ss_pred CCHHH-CC-HHHHHHHCCHHHHHHHHH-----CCCEEEEE----CCHHHHHHHH
T ss_conf 66234-06-444664161676789872-----79889990----4979998760
No 322
>PRK03059 PII uridylyl-transferase; Provisional
Probab=29.34 E-value=31 Score=15.57 Aligned_cols=58 Identities=29% Similarity=0.539 Sum_probs=30.4
Q ss_pred HHHHHHHCCCCCCCCCCH-HHHHC---CCCCHHHHHHHHHCCCHHHHHC--CHHHHHHHHHHHHHHC
Q ss_conf 799999669989999761-46231---2345799999761553899842--7999999872128762
Q gi|254780812|r 6 QKILEVLQGNVINPPPIW-LMRQA---GRYLPEYRQIRKKFKNFLDMCY--TPEYTVELTLQPIRRY 66 (346)
Q Consensus 6 ~~~l~al~g~~~~r~PVW-~MrQA---Grylpey~~~r~~~~~f~~~~~--~pela~evtl~p~~r~ 66 (346)
+.|+.-++... ...++| .|.+. |||+||+..++..++ +|+.| |++-=+=-++.-+++|
T Consensus 393 ~~F~~iL~~~~-~~~~~l~~M~~~GvL~~~iPef~~I~g~mQ--fD~yH~YTVDeHtl~~v~~l~~~ 456 (857)
T PRK03059 393 ALFMQILQQPR-GITHALRLMNQTSVLGRYLPNFRRIVGQMQ--HDLFHVYTVDQHILMVLRNLRRF 456 (857)
T ss_pred HHHHHHHCCCC-CHHHHHHHHHHHCCHHHHCCCHHHHHCCCC--CCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999973898-589999999874862753665786716634--55024160637899999999997
No 323
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=29.30 E-value=18 Score=17.18 Aligned_cols=58 Identities=22% Similarity=0.196 Sum_probs=26.4
Q ss_pred EECCCCCCHHHHHHHCCC--------EEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCC-------C-EEEECCCCC
Q ss_conf 304677998999970798--------4696888846770998899999999999732599-------2-896089763
Q gi|254780812|r 265 IGLDWSVPLSFALELQKE--------GPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGP-------F-IFNLGHGIT 326 (346)
Q Consensus 265 isiD~~~dl~~a~~~~~~--------~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~-------~-I~nLGhGi~ 326 (346)
+-++...|+-++.++..+ .++--||+- =..++|.+.+-++.+.+ . +-| + ||+-+||..
T Consensus 504 lp~~~~~d~fe~l~~q~~lq~~yTGGtVlHi~LgE--~~~~~ea~~~lvk~~~~-~-~lpY~titp~fsiC~~chgy~ 577 (625)
T PRK08271 504 VPLDANTDALDRFKLHGKLDKKVSGGSILHLNLDE--SLKSEEGYLKLVNIAAK-T-GVNYFAINVKITICNEGHAID 577 (625)
T ss_pred CCCCCCCCHHHHHHHHCCCCCEECCEEEEEEECCC--CCCCHHHHHHHHHHHHH-C-CCCEEEECCCEEECCCCCCCC
T ss_conf 78889989999997524642224141899976688--88999999999999984-7-997699576713788999885
No 324
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=28.93 E-value=43 Score=14.50 Aligned_cols=118 Identities=20% Similarity=0.171 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCC
Q ss_conf 99999999999777775498167843831100683567776127226899998630886236024311000013420147
Q gi|254780812|r 181 LDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLT 260 (346)
Q Consensus 181 l~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~ 260 (346)
+..|-+.+.+|+...=-.++++--+|-.|-|..+.+.-..|.+-...-.+..+-.. .++|. |...+ .+.--+
T Consensus 220 i~aL~~l~~eyl~~~g~~D~~v~tV~hqwMG~FP~d~~~A~~li~~~a~~A~~~gA---~kvIv--KT~~E---A~gIPt 291 (428)
T cd00245 220 LRALRELAKEYLPKYGYKDVDIHTVFHQWMGGFPRDESGAFGLIGYAATIAALSGA---TKVIV--KTPDE---AHGIPT 291 (428)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC---CEEEE--CCHHH---HCCCCC
T ss_conf 99999999999986698871699998740477998731357789889999987179---77997--28899---758998
Q ss_pred -CCCEEECCCCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf -8722304677998999970798469688884677099889999999999973
Q gi|254780812|r 261 -DSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVL 312 (346)
Q Consensus 261 -g~d~isiD~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~ 312 (346)
..++- -++.++...+-.--|-..+...+-...+.+++||+.++++.
T Consensus 292 ~eaN~~------~l~~t~~~~~~~~~q~~~~~~~~~~E~~~i~~Ev~~i~d~V 338 (428)
T cd00245 292 IEANVA------GLKATATVLNMLRGQKFPPSEAIEQEEEIIKAEVKAILDKV 338 (428)
T ss_pred HHHHHH------HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 899999------99999999998734556786310358999999999999999
No 325
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=28.82 E-value=44 Score=14.49 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHH
Q ss_conf 22689999863088623602431100001342014787223046779989999707984696888846770998899999
Q gi|254780812|r 225 SVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDG 304 (346)
Q Consensus 225 ~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~ 304 (346)
.++.+++.+|+. ++.+..|.--....+ +.+...|+|++-+--. ..|... + -...+...+.
T Consensus 111 ~L~~~i~~lk~~--~IrvSLFIDPd~~qi-~~a~~~Gad~VElhTG---~Ya~a~----------~----~~~~~~el~~ 170 (234)
T cd00003 111 KLKPIIERLKDA--GIRVSLFIDPDPEQI-EAAKEVGADRVELHTG---PYANAY----------D----KAEREAELER 170 (234)
T ss_pred HHHHHHHHHHHC--CCEEEEEECCCHHHH-HHHHHHCCCEEEEECH---HHHHHC----------C----CHHHHHHHHH
T ss_conf 999999999865--982799727987899-9999849399998247---878634----------8----1039999999
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 99999973259928960897633668899999999
Q gi|254780812|r 305 VNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVK 339 (346)
Q Consensus 305 ~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~ 339 (346)
..++.+.+..-|.-+|.|||+. .+|+..|.+
T Consensus 171 i~~aa~~A~~lGL~VnAGHgLn----~~Nl~~i~~ 201 (234)
T cd00003 171 IAKAAKLARELGLGVNAGHGLN----YENVKPIAK 201 (234)
T ss_pred HHHHHHHHHHCCCEEECCCCCC----HHHHHHHHC
T ss_conf 9999999998598785478988----767999855
No 326
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=28.75 E-value=44 Score=14.48 Aligned_cols=116 Identities=16% Similarity=0.271 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHCCCCCCCHHHHHHHHC-----------------C-CHHHHHHH
Q ss_conf 7877787642102453201111479999999---9612467765246775301-----------------3-72228999
Q gi|254780812|r 122 PIFQSISILRKKLPNHITLIGFCGAPWTVAS---YMISGGFIKDHGQNRVFAY-----------------Q-NSRAFNWL 180 (346)
Q Consensus 122 ~v~eAi~~~k~~l~~~~pLIGF~GgP~Tlas---YmieG~~sk~~~~~~~~~~-----------------~-~p~~~~~l 180 (346)
.+.++=+.+|++-| +.||++=+|+|=+..- |-+ +.-.++-.++. + |+...+.+
T Consensus 103 ~~~~tF~~vR~~aP-~~~l~AN~GA~q~~~~~~~~g~-----~~~~~aid~i~AdAL~iHlN~~QE~vqpEGDr~F~~G~ 176 (349)
T TIGR02151 103 EVAETFEVVREEAP-NGPLIANIGAPQLVEGGKKYGV-----EEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFSKGW 176 (349)
T ss_pred HHHHHHHHHHHHCC-CCCEEECCCHHHHHCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 24666999997679-8337871787887406534488-----99999998751013355432330255799970156538
Q ss_pred HHHHHHHHHH-----------------HHHHHHHCCCCEEEECC----CCHHH----------CCH----HHHHHHHCCC
Q ss_conf 9999999999-----------------97777754981678438----31100----------683----5677761272
Q gi|254780812|r 181 LDFLSDVSAE-----------------YLIAQIHAGVDVIQIFD----THAGC----------LGE----HEFENYAARS 225 (346)
Q Consensus 181 l~~lt~~~~~-----------------yl~~Qi~aGad~iqIFD----s~ag~----------Ls~----~~f~~f~~p~ 225 (346)
++.|.++|-. -++...++|+++|-|-= |||.+ ... +.|.+|-.|.
T Consensus 177 l~~i~~~~~~~~vPVIvKEvG~G~S~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~Rr~~~~~~~~~r~a~~f~~WGipT 256 (349)
T TIGR02151 177 LEKIAEICSAVSVPVIVKEVGFGISKEVAKLLADAGVKAIDVSGAGGTSWAAVENYRRAKESNQKYERLASAFSDWGIPT 256 (349)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
T ss_conf 99999999652898799821579988999999878900887078767559999988751575235788877774148866
Q ss_pred HHHHHHHHHHHCCCCEEE
Q ss_conf 268999986308862360
Q gi|254780812|r 226 VGRIISAVRRKYPNAKFI 243 (346)
Q Consensus 226 ~kkI~~~ik~~~~~vpiI 243 (346)
..-|++.=....++.|+|
T Consensus 257 ~~sL~~~~~~~~~~~~~i 274 (349)
T TIGR02151 257 AASLLEVRSIDAPDAPLI 274 (349)
T ss_pred HHHHHHHHHHHCCCCCEE
T ss_conf 899999864212477368
No 327
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=28.75 E-value=36 Score=15.11 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=23.5
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8960897633668899999999997306
Q gi|254780812|r 318 IFNLGHGITPQVDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 318 I~nLGhGi~p~tp~eNv~~~v~~vr~~~ 345 (346)
+||.|.|..--+++++....++..+++.
T Consensus 260 tFNmGiGmvliv~~~~~~~v~~~l~~~g 287 (297)
T cd02196 260 TFNMGIGMVLIVSEEDADEVLEILEKLG 287 (297)
T ss_pred HCCCCCEEEEEECHHHHHHHHHHHHHCC
T ss_conf 5478722999983899999999999769
No 328
>TIGR00583 mre11 DNA repair protein (mre11); InterPro: IPR003701 Mre11 and Rad50 are two proteins required for DNA repair and meiosis-specific double-strand break formation in Saccharomyces cerevisiae. Mre11 by itself has 3' to 5' exonuclease activity that is increased when Mre11 is in a complex with Rad50 . These eukaryotic proteins contain one metallo-phosphoesterase domain followed by an Mre11 DNA-binding domain. S. cerevisiae Mre11 is required for DNA repair and meiosis-specific double-strand break (DSB) formation and has both 3' to 5' exonuclease activity (which increases when in complex with Rad50) and endonuclease activity. The N-terminal phosphoesterase domain is required for DSB repair, and the carboxyl-terminal dsDNA-binding domain is essential during meiosis for chromatin modification and DSB formation . Schizosaccharomyces pombe rad32 is required for repair of double strand breaks and recombination . For additional information please see . ; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=28.63 E-value=15 Score=17.82 Aligned_cols=41 Identities=27% Similarity=0.733 Sum_probs=30.9
Q ss_pred CHHHHHHHHHCCCCCC--CCCC----HH--------------HHHCCCCCHHHHHHHHHCCCHHHH
Q ss_conf 6057999996699899--9976----14--------------623123457999997615538998
Q gi|254780812|r 3 ERKQKILEVLQGNVIN--PPPI----WL--------------MRQAGRYLPEYRQIRKKFKNFLDM 48 (346)
Q Consensus 3 ~~~~~~l~al~g~~~~--r~PV----W~--------------MrQAGrylpey~~~r~~~~~f~~~ 48 (346)
-+.+||-||.|-.+|. ||=. || =|..|.||||- =-++|+||
T Consensus 175 vRDeRL~r~Fk~n~v~F~rP~~~~~dWFNLl~lHQNhPrr~~Ht~TG~fLPE~-----~lpdF~Dl 235 (424)
T TIGR00583 175 VRDERLFRTFKDNKVKFLRPNLRKEDWFNLLVLHQNHPRRAAHTSTGSFLPES-----FLPDFLDL 235 (424)
T ss_pred HHHHHCEEEEECCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHH-----HHHHHHHH
T ss_conf 21101020121273588417777687410000215886645577742426134-----20345635
No 329
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI; InterPro: IPR014227 This entry contains the sporulation protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E . Second, mutation leads to a sporulation defect. Third, it is found in exactly those genomes whose bacteria are capable of sporulation, except that it is absent in Clostridium acetobutylicum ATCC 824. YtvI has extensive hydrophobic regions and is likely to be an integral membrane protein..
Probab=28.54 E-value=44 Score=14.46 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=27.1
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCC-HHHHHH----HHHHHHHHHHHHHHHHH
Q ss_conf 99961246776524677530137-222899----99999999999977777
Q gi|254780812|r 151 ASYMISGGFIKDHGQNRVFAYQN-SRAFNW----LLDFLSDVSAEYLIAQI 196 (346)
Q Consensus 151 asYmieG~~sk~~~~~~~~~~~~-p~~~~~----ll~~lt~~~~~yl~~Qi 196 (346)
|+|++ |||..+.++++++- |+.+++ ....+......|++||.
T Consensus 175 A~Ffi----s~Dl~~l~~~~~~~lP~~~~~~~~~i~~~~~k~~~Gf~KAQ~ 221 (350)
T TIGR02872 175 ATFFI----SKDLPRLKSKLFSILPERTSQKLKNIFSELKKALFGFLKAQL 221 (350)
T ss_pred HHHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998----733999999998766578999999999999999999999999
No 330
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.51 E-value=44 Score=14.46 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=11.0
Q ss_pred HHHHHHCCCCEEEEC
Q ss_conf 777775498167843
Q gi|254780812|r 192 LIAQIHAGVDVIQIF 206 (346)
Q Consensus 192 l~~Qi~aGad~iqIF 206 (346)
++.-.+||.|.|+|-
T Consensus 150 A~rA~~AGfDgVEiH 164 (353)
T cd04735 150 TRRAIEAGFDGVEIH 164 (353)
T ss_pred HHHHHHCCCCEEEEC
T ss_conf 999998399989975
No 331
>TIGR00884 guaA_Cterm GMP synthase, C-terminal domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations . GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains .; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process.
Probab=28.44 E-value=19 Score=17.02 Aligned_cols=187 Identities=17% Similarity=0.201 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHHHHHCCCCCCCHHHH----HHHHCC-CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78777876421024532011114799-9999996124677652467----753013-72228999999999999997777
Q gi|254780812|r 122 PIFQSISILRKKLPNHITLIGFCGAP-WTVASYMISGGFIKDHGQN----RVFAYQ-NSRAFNWLLDFLSDVSAEYLIAQ 195 (346)
Q Consensus 122 ~v~eAi~~~k~~l~~~~pLIGF~GgP-~TlasYmieG~~sk~~~~~----~~~~~~-~p~~~~~ll~~lt~~~~~yl~~Q 195 (346)
++-++|+.+|++.+|.+.+++.+||= =|+|+.|+. +...|-+.. --+|.+ ++|.+.+.+.--.
T Consensus 2 fi~~~i~~ir~~VGD~~vi~ALSGGVDSsV~A~L~h-rAIGD~L~~vFVD~GLlR~gE~E~V~~~F~~~l---------- 70 (319)
T TIGR00884 2 FIEEAIEEIREQVGDAKVIIALSGGVDSSVAAVLLH-RAIGDRLTCVFVDHGLLRKGEAERVVKTFSDKL---------- 70 (319)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHH-HHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHH----------
T ss_conf 368899999852288468998108815899999998-642276048982278887663789999987530----------
Q ss_pred HHCCCCEEEE------CCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCC-CEEECCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf 7549816784------3831100683567776127226899998630886-23602431100001342014787223046
Q gi|254780812|r 196 IHAGVDVIQI------FDTHAGCLGEHEFENYAARSVGRIISAVRRKYPN-AKFISFAKGAGYMLKNYRRLTDSNAIGLD 268 (346)
Q Consensus 196 i~aGad~iqI------FDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~-vpiI~f~~g~~~~l~~~~~~~g~d~isiD 268 (346)
|.+.+.| +..-.|.=.||.=|+-+-.-.-++++..-++..+ -.+=|-.= +.+++|..+.....+-+.-
T Consensus 71 ---g~nl~~VDA~e~FL~~L~GV~DPE~KRKIIG~~FI~VFE~~A~~~~~~~~a~yL~Q--GTlYPDvIES~~~kG~~~a 145 (319)
T TIGR00884 71 ---GLNLVVVDAKERFLSALKGVTDPEEKRKIIGRVFIEVFEREAEKIGDKKKAEYLVQ--GTLYPDVIESASSKGTSGA 145 (319)
T ss_pred ---CCCCEEECCCHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE--CCCCCCEEEECCCCCCCCC
T ss_conf ---89827876107988752889870341311225667778889985079977999973--4344746460230477647
Q ss_pred CCCCHHHHHHHCCCEEEECCCCHHHH----CCC-HHHHHHHHHHHHHHHC-------CCCCEEEECCC----CCCCCCHH
Q ss_conf 77998999970798469688884677----099-8899999999999732-------59928960897----63366889
Q gi|254780812|r 269 WSVPLSFALELQKEGPVQGNLDPMRL----VVG-NQVMIDGVNAILDVLG-------SGPFIFNLGHG----ITPQVDPK 332 (346)
Q Consensus 269 ~~~dl~~a~~~~~~~~lqGNldP~~L----~~~-~e~i~~~~~~~l~~~~-------~~~~I~nLGhG----i~p~tp~e 332 (346)
...|-+- + .|.| |..| ..+ .+=.++||+++=+..| ++|| .|=| |.-+...|
T Consensus 146 -----~~IKsHH-N---VGGL-P~~m~l~LvEPLR~LfKDEVR~lG~~LGlP~ei~~R~PF---PGPGLAvRv~GEVt~e 212 (319)
T TIGR00884 146 -----ATIKSHH-N---VGGL-PEDMKLKLVEPLRELFKDEVRKLGKELGLPEEIVWRHPF---PGPGLAVRVLGEVTKE 212 (319)
T ss_pred -----CCCCCCC-C---CCCC-CCCCEEEEECCCHHCCHHHHHHHHHHCCCCHHHHCCCCC---CCCCCEEEEECCCCHH
T ss_conf -----6456310-6---6888-542602587540230217899999871886799647836---8696227886166779
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780812|r 333 NVLDL 337 (346)
Q Consensus 333 Nv~~~ 337 (346)
.++-+
T Consensus 213 ~l~i~ 217 (319)
T TIGR00884 213 KLEIL 217 (319)
T ss_pred HHHHH
T ss_conf 99997
No 332
>PRK00654 glgA glycogen synthase; Provisional
Probab=28.41 E-value=6.7 Score=20.21 Aligned_cols=11 Identities=9% Similarity=0.265 Sum_probs=8.7
Q ss_pred CCCCHHHHHHH
Q ss_conf 45320111147
Q gi|254780812|r 135 PNHITLIGFCG 145 (346)
Q Consensus 135 ~~~~pLIGF~G 145 (346)
.+++||+||+|
T Consensus 290 ~~~~pl~~~vg 300 (476)
T PRK00654 290 DDDAPLFAMVS 300 (476)
T ss_pred CCCCCEEEEEE
T ss_conf 89974899985
No 333
>pfam01738 DLH Dienelactone hydrolase family.
Probab=28.16 E-value=45 Score=14.41 Aligned_cols=29 Identities=24% Similarity=0.621 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHC---CCCCCHHHHHH-HHHHHH
Q ss_conf 787778764210---24532011114-799999
Q gi|254780812|r 122 PIFQSISILRKK---LPNHITLIGFC-GAPWTV 150 (346)
Q Consensus 122 ~v~eAi~~~k~~---l~~~~pLIGF~-GgP~Tl 150 (346)
-+..++..+++. -++++-++||| ||-+++
T Consensus 81 d~~aa~~~l~~~~~~~~~rig~~Gfc~GG~~a~ 113 (216)
T pfam01738 81 DLLAAINYLRGQPYVDTKKVGVVGFCLGGRLAF 113 (216)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHH
T ss_conf 999999999837777888289998664899999
No 334
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=28.04 E-value=45 Score=14.40 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHH
Q ss_conf 37877787642102453201--11147999999
Q gi|254780812|r 121 LPIFQSISILRKKLPNHITL--IGFCGAPWTVA 151 (346)
Q Consensus 121 ~~v~eAi~~~k~~l~~~~pL--IGF~GgP~Tla 151 (346)
..+.++|-..|..|+.++|+ .| ||-|.+.+
T Consensus 201 ~~l~~~i~~ak~~lp~~~PvHlFG-aGHPm~f~ 232 (486)
T PRK13533 201 DELVDVVLAAKSGLSPGAPVHLFG-AGHPMMFA 232 (486)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEC-CCCHHHHH
T ss_conf 999999999972299999715415-88477899
No 335
>COG3403 Uncharacterized conserved protein [Function unknown]
Probab=27.98 E-value=32 Score=15.47 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHCC--CCEEEECCCCHHHCCHHHHHHHHCCCHHHH
Q ss_conf 99999999977777549--816784383110068356777612722689
Q gi|254780812|r 183 FLSDVSAEYLIAQIHAG--VDVIQIFDTHAGCLGEHEFENYAARSVGRI 229 (346)
Q Consensus 183 ~lt~~~~~yl~~Qi~aG--ad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI 229 (346)
-+.+.+.+|.+.|=+.| |.-|.+|||=-++++..+|++-....+.-+
T Consensus 70 gla~~Laey~t~~~D~g~~aSfv~~fdtPEdl~~e~dyee~lwq~l~~L 118 (257)
T COG3403 70 GLAPLLAEYGTISRDTGKYASFVVTFDTPEDLFTEPDYEERLWQQLRAL 118 (257)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5479999973412456761579997348166410155999999999988
No 336
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=27.76 E-value=45 Score=14.37 Aligned_cols=123 Identities=10% Similarity=0.103 Sum_probs=65.3
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCC
Q ss_conf 530137222899999999999999777775498167843-8311006835677761272268999986308862360243
Q gi|254780812|r 168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFA 246 (346)
Q Consensus 168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~ 246 (346)
...|.+|+.+.++.+ +.|+|++.+. -+.-|.-..+ -.-.-.+++.|++.. ++|+..|.
T Consensus 149 ~~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~yk~~------p~L~~d~L~~I~~~~-~iPLVLHG 207 (281)
T PRK06806 149 EMLLTSTEEAKRFAE--------------ETDVDALAVAIGNAHGMYNGD------PNLRLDRLQEINDNV-HIPLVLHG 207 (281)
T ss_pred CCCCCCHHHHHHHHH--------------HHCCCEEEEECCCCCCCCCCC------CCCCHHHHHHHHHHC-CCCEEEEC
T ss_conf 756689899999999--------------859989987437554565899------866999999999728-99989649
Q ss_pred CCCCCC---HHHHHCCCCCCEEECCCCCCHHHH---HHHCCCEEEECCCCHHHHCC-CHHHHHHHHHHHHHHHCCCC
Q ss_conf 110000---134201478722304677998999---97079846968888467709-98899999999999732599
Q gi|254780812|r 247 KGAGYM---LKNYRRLTDSNAIGLDWSVPLSFA---LELQKEGPVQGNLDPMRLVV-GNQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 247 ~g~~~~---l~~~~~~~g~d~isiD~~~dl~~a---~~~~~~~~lqGNldP~~L~~-~~e~i~~~~~~~l~~~~~~~ 316 (346)
|++.. +..... .|+.=+.++...-.... ++...+ .-..||..++. ..+.+++.+++.++.++..|
T Consensus 208 -gSG~~~e~i~~ai~-~Gi~KiNi~T~l~~a~~~~~r~~~~~---~~~~d~~~~~~~~~~a~~e~v~~~i~~fGS~g 279 (281)
T PRK06806 208 -GSGISPEDFKQCIQ-HGIRKINVATATFNNVITAVNNLVLN---TPYSDYFTYHQDVIKAAYENVKKHMQIFGSEN 279 (281)
T ss_pred -CCCCCHHHHHHHHH-CCCEEEEECHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -99999999999998-69838986757899999999999860---89888689879999999999999999978898
No 337
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=27.72 E-value=45 Score=14.36 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=37.9
Q ss_pred CHHHHHHH---CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCC-CCCEEEECCCCCCCCC-HHHHHHHHHHHHHC
Q ss_conf 98999970---79846968888467709988999999999997325-9928960897633668-89999999999730
Q gi|254780812|r 272 PLSFALEL---QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGS-GPFIFNLGHGITPQVD-PKNVLDLVKTVRSE 344 (346)
Q Consensus 272 dl~~a~~~---~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~-~~~I~nLGhGi~p~tp-~eNv~~~v~~vr~~ 344 (346)
+++..+++ +..++++|.++|..+ ..+.+ +..|+=-|-+|...-+ .+-.+.|.+.++.|
T Consensus 152 ~~~~ik~l~~~~~~vaVaGGI~~~~~---------------~~~~~~~~~ivIVGraIt~a~dP~~aA~~i~~~I~~~ 214 (216)
T PRK13306 152 DLNKVKKLSDMGFKVSVTGGIVPEDL---------------KLFKGIPIKTFIAGRAIRGAKDPAEAARAFKDEIAKY 214 (216)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHH---------------HHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 89999997636982998599898999---------------9986279989998852358999999999999999986
No 338
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132 This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown..
Probab=27.57 E-value=43 Score=14.54 Aligned_cols=139 Identities=14% Similarity=0.160 Sum_probs=80.5
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 53013722289999999999999977777549816784383110068356777612722689999863088623602431
Q gi|254780812|r 168 VFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 168 ~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
.|..++||.+.+|.++.-+- -+=|-..-+-+| ..-|+++.-.+=.. ..+++++.+-.+ +..++=+|.
T Consensus 43 ~Wae~hPelvk~lveI~~~G--------HEIGsHgY~h~~--~~~l~~E~ikkd~~-~a~~~i~~~~g~--~p~LlRpP~ 109 (198)
T TIGR02764 43 SWAERHPELVKELVEIVKDG--------HEIGSHGYRHKN--YTTLEDEKIKKDLL-RAQEIIEKLTGK--KPTLLRPPN 109 (198)
T ss_pred HHHHCCHHHHHHHHHHHHCC--------CCCCCCCCCCCC--CCCCCHHHHHHHHH-HHHHHHHHHCCC--CEEEEECCC
T ss_conf 57612778999999998448--------430335421242--12587648999999-988888651055--501656889
Q ss_pred CC-CCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCE---EEECCCCH---HHHC-CC--HHHHHHHHHHHHHHHCCCCC
Q ss_conf 10-0001342014787223046779989999707984---69688884---6770-99--88999999999997325992
Q gi|254780812|r 248 GA-GYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEG---PVQGNLDP---MRLV-VG--NQVMIDGVNAILDVLGSGPF 317 (346)
Q Consensus 248 g~-~~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~---~lqGNldP---~~L~-~~--~e~i~~~~~~~l~~~~~~~~ 317 (346)
|. +...-..++..|+.|+.=+|.+|..+.++-|-+. -+.=|+.| .+|+ +| ..+=.++..++|.+.+..||
T Consensus 110 G~fn~~~~~~ae~~GY~~V~WsWHvdS~DWkNPG~e~iv~~V~~~~~~GdIiL~HDASd~~KqT~~ALp~Ii~~LK~~GY 189 (198)
T TIGR02764 110 GAFNKAVLKLAESLGYTVVHWSWHVDSLDWKNPGVESIVDRVVKNTKPGDIILLHDASDSAKQTVKALPEIIKKLKEKGY 189 (198)
T ss_pred CCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 86046899999973991898624558835457861000111331279985698763487974417789999899875495
Q ss_pred EE
Q ss_conf 89
Q gi|254780812|r 318 IF 319 (346)
Q Consensus 318 I~ 319 (346)
=|
T Consensus 190 ~f 191 (198)
T TIGR02764 190 EF 191 (198)
T ss_pred EE
T ss_conf 34
No 339
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit; InterPro: IPR005741 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit A (parC) of topoisomerase IV from Gram positive bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=27.49 E-value=18 Score=17.10 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=14.7
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHH
Q ss_conf 38998427999999872128762987265213320010432
Q gi|254780812|r 44 NFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADAL 84 (346)
Q Consensus 44 ~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~eal 84 (346)
-++|+|.-|| |+-=|.|-|.|=+--+.--
T Consensus 200 ~L~e~~kgPD------------FPTGG~i~~~~~~~~aY~t 228 (745)
T TIGR01061 200 KLMEIVKGPD------------FPTGGIIQGEDGIKKAYET 228 (745)
T ss_pred HHHHHCCCCC------------CCCCCEEECHHHHHHHHHC
T ss_conf 8985448411------------5887246141547889854
No 340
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme; InterPro: IPR006316 These sequences represent a family of pyridoxal-phosphate dependent enzymes that are closely related to the beta subunit of tryptophan synthase. ; GO: 0004834 tryptophan synthase activity, 0030170 pyridoxal phosphate binding, 0000162 tryptophan biosynthetic process.
Probab=26.94 E-value=27 Score=15.90 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHCCCCCEEEE-CCCCCC
Q ss_conf 99999999973259928960-897633
Q gi|254780812|r 302 IDGVNAILDVLGSGPFIFNL-GHGITP 327 (346)
Q Consensus 302 ~~~~~~~l~~~~~~~~I~nL-GhGi~p 327 (346)
.++++++-+.+..+-=+||| |||++-
T Consensus 389 ~~~A~K~~~~g~ekvi~f~lSGHGLLD 415 (426)
T TIGR01415 389 IDEARKAREEGKEKVILFNLSGHGLLD 415 (426)
T ss_pred HHHHHHCCCCCCEEEEEEECCCCHHHH
T ss_conf 999872766786038998627721321
No 341
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=26.88 E-value=47 Score=14.26 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=5.3
Q ss_pred HHHHHHHHCCCHHHHHH
Q ss_conf 35677761272268999
Q gi|254780812|r 215 EHEFENYAARSVGRIIS 231 (346)
Q Consensus 215 ~~~f~~f~~p~~kkI~~ 231 (346)
.+.|++.++++++++++
T Consensus 15 ~~nf~~~v~~F~~~lv~ 31 (192)
T cd01473 15 YSNWRKDVIPFTEKIIN 31 (192)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 67769999999999998
No 342
>pfam00708 Acylphosphatase Acylphosphatase.
Probab=26.82 E-value=47 Score=14.25 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=17.2
Q ss_pred HHHHHHHHCCCCCEEEECCC---CCCCCCHHHHHHHHHHHHH
Q ss_conf 99999973259928960897---6336688999999999973
Q gi|254780812|r 305 VNAILDVLGSGPFIFNLGHG---ITPQVDPKNVLDLVKTVRS 343 (346)
Q Consensus 305 ~~~~l~~~~~~~~I~nLGhG---i~p~tp~eNv~~~v~~vr~ 343 (346)
+.+.-...+=.||+.|+.-| +.-.-+.+++..|++.+++
T Consensus 22 ~~~~A~~lgl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~~ 63 (90)
T pfam00708 22 VYRLARELGLKGYVRNLPDGTVEIVAQGPEEDVEKFIEWLKK 63 (90)
T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHHH
T ss_conf 999999859879999999990999999399999999999976
No 343
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.78 E-value=47 Score=14.25 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=27.2
Q ss_pred ECCCCHHHHCCCH-----HHHHHHHHHHHHHHCCCC-CEEEECCCCCCCCCHH----HHHHHHHHHHHCC
Q ss_conf 6888846770998-----899999999999732599-2896089763366889----9999999997306
Q gi|254780812|r 286 QGNLDPMRLVVGN-----QVMIDGVNAILDVLGSGP-FIFNLGHGITPQVDPK----NVLDLVKTVRSEK 345 (346)
Q Consensus 286 qGNldP~~L~~~~-----e~i~~~~~~~l~~~~~~~-~I~nLGhGi~p~tp~e----Nv~~~v~~vr~~~ 345 (346)
++|+|-.+++.+. .-...+.++.+++. +-| -+|.-.+.=+-.-+.+ .|++|+|....-|
T Consensus 359 ~~~vDG~v~H~NRSCk~~S~~~~e~R~~~ek~-GiP~~~fdgD~~DpR~FSeaQ~~TRveaflE~m~~rk 427 (430)
T TIGR03191 359 DWNVDGCMLHLNRGCEGLSIGIMENRLAIAKA-GIPIMTFEGNMGDEREFDEVRTQARVDAFMEQLGLRR 427 (430)
T ss_pred HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHC-CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 71998799947889864321058999999875-9987997478788254789999999999999998753
No 344
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=26.67 E-value=47 Score=14.24 Aligned_cols=137 Identities=12% Similarity=0.129 Sum_probs=76.4
Q ss_pred HHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEE--CCCCCCCC----CHH------HHHCCC
Q ss_conf 777754981678438311006835677761272268999986308862360--24311000----013------420147
Q gi|254780812|r 193 IAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFI--SFAKGAGY----MLK------NYRRLT 260 (346)
Q Consensus 193 ~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI--~f~~g~~~----~l~------~~~~~~ 260 (346)
..-+..|||+|.+-=-|++--.+++++ -+.++.++.++. +.|++ .|++|... ..+ .+....
T Consensus 100 eeAvrlGAdaV~~~v~~Gs~~E~~~l~-----~l~~l~~ea~~~--GlPll~~~yprG~~~~~~~d~~~ia~aaRia~EL 172 (266)
T PRK07226 100 EDAIKLGADAVSVHVNVGSETEAEMLE-----DLGRIARECEEW--GMPLLAMMYPRGPKIKNEYDPEVVAHAARVGAEL 172 (266)
T ss_pred HHHHHCCCCEEEEEEECCCCCHHHHHH-----HHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999855877899985479983799999-----999999999985--9956999734688777787599999999999996
Q ss_pred CCCEEECCCCCCHHHHHHHC---C-CEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCCHHHHH
Q ss_conf 87223046779989999707---9-8469688884677099889999999999973259928960897633-66889999
Q gi|254780812|r 261 DSNAIGLDWSVPLSFALELQ---K-EGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITP-QVDPKNVL 335 (346)
Q Consensus 261 g~d~isiD~~~dl~~a~~~~---~-~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p-~tp~eNv~ 335 (346)
|+|++-++|.-|.+..+++- + .+.+.|.=. ..+.+++.+.+++.++.+.. |-+ .|--|.. +-|..-++
T Consensus 173 GADiVKv~y~gd~e~f~~vv~~~~vPVliaGG~k----~~~~~~~L~~v~~ai~aGa~-Gv~--~GRNvfQ~~~p~~~~~ 245 (266)
T PRK07226 173 GADIIKTNYTGDPESFREVVEGCPVPVVIAGGPK----TGSDLEFLQMVEDAMEAGAA-GVA--IGRNIFQHEDPAKITR 245 (266)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCC----CCCHHHHHHHHHHHHHCCCC-EEE--ECCHHHCCCCHHHHHH
T ss_conf 7998983599998999999984798789957888----89889999999999975994-665--2610235798999999
Q ss_pred HHHHHHHH
Q ss_conf 99999973
Q gi|254780812|r 336 DLVKTVRS 343 (346)
Q Consensus 336 ~~v~~vr~ 343 (346)
++..-||+
T Consensus 246 al~~iVH~ 253 (266)
T PRK07226 246 AISAVVHE 253 (266)
T ss_pred HHHHHHCC
T ss_conf 99998509
No 345
>pfam03562 MltA MltA specific insert domain. This beta barrel domain is found inserted in the MltA a murein degrading transglycosylase enzyme. This domain may be involved in peptidoglycan binding.
Probab=26.50 E-value=48 Score=14.22 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=32.9
Q ss_pred CCHHHHHHH---HHHH-HHHHHHCCCC----CCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 320111147---9999-9999612467----7652467753013722289999999
Q gi|254780812|r 137 HITLIGFCG---APWT-VASYMISGGF----IKDHGQNRVFAYQNSRAFNWLLDFL 184 (346)
Q Consensus 137 ~~pLIGF~G---gP~T-lasYmieG~~----sk~~~~~~~~~~~~p~~~~~ll~~l 184 (346)
++--+||+| -||| +..+|++-|- .-....++.|+.++|+...++|..-
T Consensus 51 ~~~rv~Yag~Ng~pY~sIGr~Li~~G~i~~~~~sm~~Ik~wl~~nP~~~~~~l~~N 106 (113)
T pfam03562 51 RTLRIGYAGKNGHPYTSIGRILVERGEIPKEEMSMQAIRAWLRANPDRVDELLERN 106 (113)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHC
T ss_conf 99999873679995521899999869978022699999999998989999999739
No 346
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=26.24 E-value=43 Score=14.55 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=31.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 7778764210245320111147-9999999961246776524677530137222899999
Q gi|254780812|r 124 FQSISILRKKLPNHITLIGFCG-APWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLD 182 (346)
Q Consensus 124 ~eAi~~~k~~l~~~~pLIGF~G-gP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~ 182 (346)
.|-.++.+.-..+++-+-=||| ||||+.. ..-|..+ -+. .--||+.++-|.+
T Consensus 177 ~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~-Ak~g~~~-V~A-----~diNP~A~~~L~e 229 (341)
T COG2520 177 TERARVAELVKEGETVLDMFAGVGPFSIPI-AKKGRPK-VYA-----IDINPDAVEYLKE 229 (341)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHH-HHCCCCE-EEE-----EECCHHHHHHHHH
T ss_conf 789999863069988998357865401246-6547863-999-----9459899999999
No 347
>PRK11823 DNA repair protein RadA; Provisional
Probab=26.17 E-value=48 Score=14.18 Aligned_cols=10 Identities=0% Similarity=0.205 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q ss_conf 6899998630
Q gi|254780812|r 227 GRIISAVRRK 236 (346)
Q Consensus 227 kkI~~~ik~~ 236 (346)
.++++..|+.
T Consensus 197 ~~L~~~AK~~ 206 (454)
T PRK11823 197 AELTRLAKQS 206 (454)
T ss_pred HHHHHHHHHC
T ss_conf 9999999744
No 348
>TIGR01496 DHPS dihydropteroate synthase; InterPro: IPR006390 This domain is present in sequences representing dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. Dihydropteroate synthase (2.5.1.15 from EC) (DHPS) catalyses the condensation of 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate to para-aminobenzoic acid to form 7,8-dihydropteroate. This is the second step in the three-step pathway leading from 6-hydroxymethyl-7,8-dihydropterin to 7,8-dihydrofolate. DHPS is the target of sulphonamides, which are substrate analogues that compete with para-aminobenzoic acid. Bacterial DHPS (gene sul or folP) is a protein of about 275 to 315 amino acid residues that is either chromosomally encoded or found on various antibiotic resistance plasmids. In the lower eukaryote Pneumocystis carinii, DHPS is the C-terminal domain of a multifunctional folate synthesis enzyme (gene fas) .; GO: 0004156 dihydropteroate synthase activity, 0009396 folic acid and derivative biosynthetic process.
Probab=26.10 E-value=48 Score=14.17 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEC-C---CCHHHCCHHHHHHHHCCCHHHHHHHHHHHC--CC--CEEECCCCCCCCC-HHHH
Q ss_conf 999999777775498167843-8---311006835677761272268999986308--86--2360243110000-1342
Q gi|254780812|r 186 DVSAEYLIAQIHAGVDVIQIF-D---THAGCLGEHEFENYAARSVGRIISAVRRKY--PN--AKFISFAKGAGYM-LKNY 256 (346)
Q Consensus 186 ~~~~~yl~~Qi~aGad~iqIF-D---s~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~--~~--vpiI~f~~g~~~~-l~~~ 256 (346)
+...+++...++.|||+|=|- + |-+..+||++=.+=+.|.++.|-+ .+ ++ +||.. +|.+- .-..
T Consensus 23 ~~A~~~a~~m~~~GA~IiDiGGeSTRPG~~~vs~~eE~~Rv~Pv~~~~~~----~~~~~dQC~~iSv---DT~~a~Va~~ 95 (268)
T TIGR01496 23 DKALEHAERMLEEGADIIDIGGESTRPGADRVSPEEELNRVVPVIKALRE----QYLFSDQCVPISV---DTYRAEVARA 95 (268)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH----HCCCCCCCEEEEE---CCCCHHHHHH
T ss_conf 89999999999739988965770579769878979999988999999997----4489998414776---1882899999
Q ss_pred HCCC-CCCEE----ECCCCCCH-HHHHHHCCCEEEECCC-CHHHHCCCH--HHHHHHHHH--------HHHHHCCCCCEE
Q ss_conf 0147-87223----04677998-9999707984696888-846770998--899999999--------999732599289
Q gi|254780812|r 257 RRLT-DSNAI----GLDWSVPL-SFALELQKEGPVQGNL-DPMRLVVGN--QVMIDGVNA--------ILDVLGSGPFIF 319 (346)
Q Consensus 257 ~~~~-g~d~i----siD~~~dl-~~a~~~~~~~~lqGNl-dP~~L~~~~--e~i~~~~~~--------~l~~~~~~~~I~ 319 (346)
+-.. |++.| ++...-++ +.|++..-.++||=|= .|..+...+ ++|.+|+.. +++.+-+..-|+
T Consensus 96 Al~~~Ga~iiNDv~G~~~dp~m~~vaae~~~~~vlMH~~g~P~~~q~~~~Y~dv~~e~~~fl~~~~~~~~~~Gv~~~I~L 175 (268)
T TIGR01496 96 ALEAFGADIINDVSGGQFDPDMLEVAAEYGVPLVLMHMRGTPETMQENPRYEDVVEEVLRFLEARAEELLAAGVAERIIL 175 (268)
T ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99867986786041146683589999984898898768763887666777656689999999999999997588665787
Q ss_pred EECCCCCC-CCCHHHHHHHHH
Q ss_conf 60897633-668899999999
Q gi|254780812|r 320 NLGHGITP-QVDPKNVLDLVK 339 (346)
Q Consensus 320 nLGhGi~p-~tp~eNv~~~v~ 339 (346)
=.|.|..+ +|+.+|++.|=.
T Consensus 176 DPG~GF~K~~t~~~Nl~ll~~ 196 (268)
T TIGR01496 176 DPGIGFGKSDTVEHNLELLKR 196 (268)
T ss_pred CCCCCCCCCCCHHHHHHHHHH
T ss_conf 177577888887678999986
No 349
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=26.09 E-value=48 Score=14.17 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=32.9
Q ss_pred CHHHHHCCCCCCEEECCCCC--CHHHHHH----------HCCCEEEECCCCHHHHCCCH-HHHHHHHHHHHHHH
Q ss_conf 01342014787223046779--9899997----------07984696888846770998-89999999999973
Q gi|254780812|r 252 MLKNYRRLTDSNAIGLDWSV--PLSFALE----------LQKEGPVQGNLDPMRLVVGN-QVMIDGVNAILDVL 312 (346)
Q Consensus 252 ~l~~~~~~~g~d~isiD~~~--dl~~a~~----------~~~~~~lqGNldP~~L~~~~-e~i~~~~~~~l~~~ 312 (346)
.+..+.+ ..+.+|+|++. |++...+ ..+..++.||+ |..+..|- +++.+...+..++.
T Consensus 213 FySpl~~--~lEllgiD~R~esniDg~~rlpA~~Ql~~~~~p~~vvvGn~-p~vlRESLL~~vf~~ge~fV~as 283 (363)
T PRK13277 213 FYSPIRD--RVELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHE-PATIRESLLEKVFDMGEKFVEAT 283 (363)
T ss_pred CCCCCCC--CEEEEECCCEEEECHHHHHCCCHHHHHCCCCCCCEEEECCC-CCEEEHHHHHHHHHHHHHHHHHH
T ss_conf 0253237--50366311102414144423986788416899845998885-32431765799999999999999
No 350
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=26.07 E-value=49 Score=14.16 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=19.5
Q ss_pred HHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 977777549816784383110068356777612722689999863088623602431
Q gi|254780812|r 191 YLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 191 yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
.+...+++|||+|-|=.. . .+.++++++.+. ++|++.|.+
T Consensus 94 na~~l~~~Ga~aVKlEgg---~------------~~~~~i~~L~~~--gIpV~gHiG 133 (240)
T cd06556 94 LAKTFMRAGAAGVKIEGG---E------------WHIETLQMLTAA--AVPVIAHTG 133 (240)
T ss_pred HHHHHHHCCCCEEEECCC---H------------HHHHHHHHHHHC--CCCEEEEEC
T ss_conf 999999859998997987---5------------089999999987--994797635
No 351
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=26.02 E-value=49 Score=14.16 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=50.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 77876421024532011114799999999612467765246775301372228999999999999997777754981678
Q gi|254780812|r 125 QSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQ 204 (346)
Q Consensus 125 eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iq 204 (346)
+-|+.+|+.. ++|+||-.= +++...- .|--| . .+-+.+.+++|||+|.
T Consensus 50 ~dI~aIk~~v--~lPIIGi~K---------------~~~~~s~--VyITP------------t-~~ev~~l~~aGadiIA 97 (219)
T cd04729 50 EDIRAIRARV--DLPIIGLIK---------------RDYPDSE--VYITP------------T-IEEVDALAAAGADIIA 97 (219)
T ss_pred HHHHHHHHCC--CCCEEEEEE---------------CCCCCCC--EEECC------------C-HHHHHHHHHCCCCEEE
T ss_conf 8999998328--998899995---------------6889998--45668------------8-9999999985999999
Q ss_pred ECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf 438311006835677761272268999986308862360243110000134201478722304
Q gi|254780812|r 205 IFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGL 267 (346)
Q Consensus 205 IFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isi 267 (346)
+ |..-- --| .-..+.++++.+|+++ +..++-=|-...... .....|+|++|-
T Consensus 98 ~-DaT~R-~RP------~g~~l~~~i~~i~~~~-~~l~MAD~st~ee~~--~A~~~G~D~vgT 149 (219)
T cd04729 98 L-DATDR-PRP------DGETLAELIKRIHEEY-NCLLMADISTLEEAL--NAAKLGFDIIGT 149 (219)
T ss_pred E-ECCCC-CCC------CCCCHHHHHHHHHHHH-CCEEEEECCCHHHHH--HHHHCCCCEEEC
T ss_conf 9-46788-798------9978999999999986-977887548899999--999849989970
No 352
>PRK01242 rpl39e 50S ribosomal protein L39e; Validated
Probab=25.84 E-value=33 Score=15.31 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=19.1
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHC---CCCCHHHH
Q ss_conf 0579999966998999976146231---23457999
Q gi|254780812|r 4 RKQKILEVLQGNVINPPPIWLMRQA---GRYLPEYR 36 (346)
Q Consensus 4 ~~~~~l~al~g~~~~r~PVW~MrQA---Grylpey~ 36 (346)
++-||.+|++.. .|+|+|+|=-. -||.|--|
T Consensus 9 ~K~RLaKa~kQN--rrvP~Wv~~KT~r~v~~npKRR 42 (51)
T PRK01242 9 KKIRLAKALKQN--RRVPAWVIVKTNRRVRQHPKRR 42 (51)
T ss_pred HHHHHHHHHHCC--CCCCEEEEEECCCCCCCCCCCC
T ss_conf 999999998555--9998489996488212686322
No 353
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids. Catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Calcium is required for cPLA2 to bind with membranes or phospholipids. Group IV cPLA2 includes six intercellular enzymes: cPLA2alpha, cPLA2beta, cPLA2gamma, cPLA2delta, cP
Probab=25.75 E-value=49 Score=14.12 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCC
Q ss_conf 111147999999996124677-6524677530137----22289999999999999977777549816784383110068
Q gi|254780812|r 140 LIGFCGAPWTVASYMISGGFI-KDHGQNRVFAYQN----SRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLG 214 (346)
Q Consensus 140 LIGF~GgP~TlasYmieG~~s-k~~~~~~~~~~~~----p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls 214 (346)
+-|-.||=|+++++......+ ++......++.++ |... ...+...+...+ +..-.+||-+ +.+-|-|+-.|+
T Consensus 78 iaGlSGgsW~~~sly~n~~~s~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-l~~K~~aG~~-~SltD~wGr~l~ 154 (438)
T cd00147 78 LSGLSGSTWLMASLYSNPDWSQKDLDEAIEWLKRHVIKSPLLL-FSPERLKYYAKE-LEEKKKAGFN-VSLTDFWGLLLG 154 (438)
T ss_pred HHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHH-HHHHHHCCCC-CCEEEHHHHHHH
T ss_conf 3016731999999985789876776554899986301274112-587899999999-9999967998-423339899999
Q ss_pred HHHHHHHHCCCHHHHHHHHH
Q ss_conf 35677761272268999986
Q gi|254780812|r 215 EHEFENYAARSVGRIISAVR 234 (346)
Q Consensus 215 ~~~f~~f~~p~~kkI~~~ik 234 (346)
...+.+...--+...-..++
T Consensus 155 ~~l~~~~~~s~ls~~~~~~~ 174 (438)
T cd00147 155 YTLLKELTDSSLSDQREFVQ 174 (438)
T ss_pred HHHCCCCCCCCHHHHHHHHH
T ss_conf 86247887554776799986
No 354
>COG2951 MltB Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]
Probab=25.55 E-value=50 Score=14.10 Aligned_cols=35 Identities=23% Similarity=0.513 Sum_probs=15.2
Q ss_pred HHHHHHHHHCCCCCCHHHH-HHHH-------HHHHHHHHHCCC
Q ss_conf 7778764210245320111-1479-------999999961246
Q gi|254780812|r 124 FQSISILRKKLPNHITLIG-FCGA-------PWTVASYMISGG 158 (346)
Q Consensus 124 ~eAi~~~k~~l~~~~pLIG-F~Gg-------P~TlasYmieG~ 158 (346)
+.+++++++.-.+...+.| .+|+ |=|...|.+.|.
T Consensus 172 ~aaL~ii~~gdv~~~~~~GSwAGAmGq~QFmPss~~~YaVD~D 214 (343)
T COG2951 172 IAALKIIQDGDVDPLALKGSWAGAMGQTQFMPSSYLKYAVDGD 214 (343)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCC
T ss_conf 9999987616987311341164314776657188998610578
No 355
>PRK01636 ccrB camphor resistance protein CrcB; Provisional
Probab=25.46 E-value=50 Score=14.09 Aligned_cols=41 Identities=10% Similarity=0.172 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHH
Q ss_conf 1114799999999-61246776524677530137-2228999999999999997
Q gi|254780812|r 141 IGFCGAPWTVASY-MISGGFIKDHGQNRVFAYQN-SRAFNWLLDFLSDVSAEYL 192 (346)
Q Consensus 141 IGF~GgP~TlasY-mieG~~sk~~~~~~~~~~~~-p~~~~~ll~~lt~~~~~yl 192 (346)
.||||| ||+.|- ..| +.. +.++ -+..-.++-.+..++.-.+
T Consensus 54 TGf~Gg-fTTFSTFs~E---------~~~-L~~~~g~~~~A~~Y~~~Svi~Gl~ 96 (118)
T PRK01636 54 TGIMGG-LSTFSSFVYG---------AVE-MAKSPTEVLVSICYLVASLIVGYI 96 (118)
T ss_pred HHHHCC-CHHHHHHHHH---------HHH-HHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 766056-1358999999---------999-998378799999999999999999
No 356
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=25.25 E-value=35 Score=15.19 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=34.3
Q ss_pred EECCHHHCCCEEEECCCC-----CCCCCCCC-HH-HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 001043244337316887-----52223333-35-5420567012344323787778764210245320111147
Q gi|254780812|r 78 LVIADALGRNVRFVENEG-----PRMDPITT-QE-IYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCG 145 (346)
Q Consensus 78 l~~~ealG~~v~f~~~~G-----P~~~p~~~-~~-~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~G 145 (346)
++.-+-|-++|+| |+. |.+.++.. +- ...-..|...-...+..-|+.|+.+-+ ++..++ |||
T Consensus 2 vsmk~LleaGvHF--GHqtRRWNPkMk~fIf~eRKngihIIDL~kT~~~~~~Ay~~v~~~~~---~gg~iL-FVG 70 (227)
T TIGR01011 2 VSMKDLLEAGVHF--GHQTRRWNPKMKPFIFGERKNGIHIIDLQKTLQLLEEAYNFVREVVA---NGGKIL-FVG 70 (227)
T ss_pred CCHHHHHHCCCCC--CCEECCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHH---CCCEEE-EEE
T ss_conf 7657686388543--75422368889885532012785122578999999999999999998---199588-851
No 357
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=25.25 E-value=50 Score=14.06 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=31.3
Q ss_pred HCCCHHHHHHHHH-------------------HHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 0137222899999-------------------999999999777775498167843831
Q gi|254780812|r 170 AYQNSRAFNWLLD-------------------FLSDVSAEYLIAQIHAGVDVIQIFDTH 209 (346)
Q Consensus 170 ~~~~p~~~~~ll~-------------------~lt~~~~~yl~~Qi~aGad~iqIFDs~ 209 (346)
+-+.||++-.+-+ .+++.+++-++-.++.|-|+|-+.||-
T Consensus 207 IDERPEEVTdm~r~v~~eV~aStfD~~~~~H~~vae~~lerAkRlvE~G~DVvillDSi 265 (416)
T PRK09376 207 IDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred ECCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 04893477787750461899977999878999999999999999987699789997315
No 358
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=25.20 E-value=49 Score=14.12 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 37877787642102453201-------1114799999999612467765246775
Q gi|254780812|r 121 LPIFQSISILRKKLPNHITL-------IGFCGAPWTVASYMISGGFIKDHGQNRV 168 (346)
Q Consensus 121 ~~v~eAi~~~k~~l~~~~pL-------IGF~GgP~TlasYmieG~~sk~~~~~~~ 168 (346)
||+.||+|.+.++..+=-.| =||.+|||=|.= || |..-||.-+++
T Consensus 197 PyYaEalR~L~E~~A~pa~lDA~LRdg~GF~MGpfELtD-LI--G~DVNfAVTcS 248 (508)
T TIGR02279 197 PYYAEALRVLEEQVAEPAVLDALLRDGAGFAMGPFELTD-LI--GHDVNFAVTCS 248 (508)
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHH-HC--CCCCCHHHHHH
T ss_conf 317899987302576846898997505888874466755-20--45523000010
No 359
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=25.19 E-value=50 Score=14.05 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=24.6
Q ss_pred HHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 146231234579999976155389984279999998721287629872652133
Q gi|254780812|r 23 WLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSD 76 (346)
Q Consensus 23 W~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsD 76 (346)
|.|++.|.++|-|+..+-. ...-.-+++|+.+..|+--|
T Consensus 34 ~~~~r~Gi~lP~~~~~~~~---------------~~l~~ii~~~~p~~lIilGD 72 (235)
T COG1407 34 ESLARRGINLPRYQTDRIL---------------KRLDRIIERYGPKRLIILGD 72 (235)
T ss_pred HHHHHCCCCCCCHHHHHHH---------------HHHHHHHHHCCCCEEEECCC
T ss_conf 9887357626701589999---------------99999998609877999075
No 360
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.15 E-value=50 Score=14.05 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=11.9
Q ss_pred HHHHHHHCCCCEEEECC
Q ss_conf 97777754981678438
Q gi|254780812|r 191 YLIAQIHAGVDVIQIFD 207 (346)
Q Consensus 191 yl~~Qi~aGad~iqIFD 207 (346)
|++...++|+|.+-|.|
T Consensus 96 F~~~~~~~GvdGvIipD 112 (247)
T PRK13125 96 LLNTAKEVGARGVLFPD 112 (247)
T ss_pred HHHHHHHCCCCEEEECC
T ss_conf 99999985997588338
No 361
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273 This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=25.14 E-value=43 Score=14.52 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCC
Q ss_conf 79999999961246776524677530137222899999999999999777775498167843831100683567776127
Q gi|254780812|r 145 GAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAAR 224 (346)
Q Consensus 145 GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p 224 (346)
=|=|-|+| |+.|.-|...- .+.++|+...+|-+.|+..++.|.-. .|.| +-=..+|++....
T Consensus 14 EGhFlLsS----G~hS~~flQ~~-~ll~~P~~~~~lg~~LA~~i~~~~~~-----~d~i-vsPA~GGv~~~Ye------- 75 (205)
T TIGR01367 14 EGHFLLSS----GKHSPYFLQSA-KLLEDPELAEKLGEELAKKILKYKLE-----VDVI-VSPAMGGVILGYE------- 75 (205)
T ss_pred CCCEEEEC----CCCCCHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHCCC-----CCEE-ECCCCCHHHHHHH-------
T ss_conf 37122405----76142366565-67616368999999999999982787-----0158-6473000468889-------
Q ss_pred CHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 22689999863088623602431
Q gi|254780812|r 225 SVGRIISAVRRKYPNAKFISFAK 247 (346)
Q Consensus 225 ~~kkI~~~ik~~~~~vpiI~f~~ 247 (346)
+..++++..|+++.|+--|
T Consensus 76 ----~AR~L~etlPd~R~iF~Er 94 (205)
T TIGR01367 76 ----VARALSETLPDVRSIFAER 94 (205)
T ss_pred ----HHHHHHHCCCCCCEEEEEE
T ss_conf ----9987410068885267776
No 362
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=25.08 E-value=32 Score=15.48 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=38.6
Q ss_pred EECCCCHH------HHCCCHHH-HHHHHHHHHHHHCC-C----CCEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 96888846------77099889-99999999997325-9----92896089763366889999999999730
Q gi|254780812|r 285 VQGNLDPM------RLVVGNQV-MIDGVNAILDVLGS-G----PFIFNLGHGITPQVDPKNVLDLVKTVRSE 344 (346)
Q Consensus 285 lqGNldP~------~L~~~~e~-i~~~~~~~l~~~~~-~----~~I~nLGhGi~p~tp~eNv~~~v~~vr~~ 344 (346)
-+++.++. .++++.|. |.+.+.-+|++.+. . .+.|-.+|.+.|.+.-+-...+-++.|+.
T Consensus 147 k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e~~~~a~~~~~~la~ls~r~a~~~~~~~~~~~ 218 (222)
T COG4912 147 KKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNELWVRAFANAHDLAPLSDREARKNLKDALREK 218 (222)
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHH
T ss_conf 376102679999999806809999999999999997206588999998776424222066766331456777
No 363
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=24.53 E-value=52 Score=13.97 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=18.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 3567776127226899998630886236024311
Q gi|254780812|r 215 EHEFENYAARSVGRIISAVRRKYPNAKFISFAKG 248 (346)
Q Consensus 215 ~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g 248 (346)
.+.|.++-....+-+.+.+++. |+|++.=++|
T Consensus 289 d~~yl~~Ri~qv~yL~~~L~~~--GvPvv~P~GG 320 (431)
T cd00617 289 EEDYLRHRVEQVRYLGDRLDEA--GVPIVEPAGG 320 (431)
T ss_pred CHHHHHHHHHHHHHHHHHHHHC--CCCEECCCCC
T ss_conf 6799997799999999999988--9966668974
No 364
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=24.53 E-value=52 Score=13.97 Aligned_cols=63 Identities=13% Similarity=0.078 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHCCCCCCCCC-CH------HHHHCC---CCCHHHHHHHH-------HCCCHHHHHCCHHHHHHHHHHHH
Q ss_conf 976057999996699899997-61------462312---34579999976-------15538998427999999872128
Q gi|254780812|r 1 MNERKQKILEVLQGNVINPPP-IW------LMRQAG---RYLPEYRQIRK-------KFKNFLDMCYTPEYTVELTLQPI 63 (346)
Q Consensus 1 M~~~~~~~l~al~g~~~~r~P-VW------~MrQAG---rylpey~~~r~-------~~~~f~~~~~~pela~evtl~p~ 63 (346)
|+++-.||-+.++.+..=+.| +| +..||| -|+.-|---.. ..-++-|++....-.++.|-.|+
T Consensus 2 ~~s~~~rlR~ll~~~~~l~~pg~~D~lsA~l~e~aGF~a~~~sG~~~saa~lG~PD~gl~t~~e~~~~~~~I~~a~~lPv 81 (292)
T PRK11320 2 LHSAGARFRAALAAEKPLQIVGTINAYHALLAERAGFQAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPL 81 (292)
T ss_pred CCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 89879999999728994895578888999999985999999642999888569998454778899999999983558887
No 365
>pfam07050 consensus
Probab=24.49 E-value=29 Score=15.69 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999999999997
Q gi|254780812|r 177 FNWLLDFLSDVSAEYL 192 (346)
Q Consensus 177 ~~~ll~~lt~~~~~yl 192 (346)
++.||+-++..+..-+
T Consensus 100 lq~LL~eVs~~Ia~~V 115 (145)
T pfam07050 100 LQSLLDEVSSKIANSV 115 (145)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999999975
No 366
>pfam04476 DUF556 Protein of unknown function (DUF556). Family of uncharacterized, hypothetical prokaryotic proteins.
Probab=24.39 E-value=52 Score=13.95 Aligned_cols=66 Identities=15% Similarity=0.294 Sum_probs=26.9
Q ss_pred HHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC-CCCCHHHHHCCCCCCEEEC
Q ss_conf 75498167843831100683567776127226899998630886236024311-0000134201478722304
Q gi|254780812|r 196 IHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG-AGYMLKNYRRLTDSNAIGL 267 (346)
Q Consensus 196 i~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g-~~~~l~~~~~~~g~d~isi 267 (346)
.++|++.+|| ||+.- =+...|+-+..+-+++.++..++. +. .....+. ....++.+.. .++|.+++
T Consensus 141 ~~~G~~gvMi-DT~~K-~g~sl~d~~~~~~L~~fv~~a~~~--gl-~~gLAGSL~~~di~~l~~-l~pd~~G~ 207 (235)
T pfam04476 141 ADAGADIAML-DTAIK-DGTTLFDHMKIEDLESFVKLARDN--GL-KVALAGSISWEHIEPLKE-IGTDIVGV 207 (235)
T ss_pred HHCCCCEEEE-ECCCC-CCCCHHHHCCHHHHHHHHHHHHHC--CC-EEEEECCCCHHHHHHHHH-CCCCEEEE
T ss_conf 9759978998-74667-897666649999999999999975--98-399845788888899986-49998997
No 367
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=24.30 E-value=52 Score=13.94 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=47.1
Q ss_pred EEECCCCCC-CCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCEEEECCC--CHHHHCCCHHHHHHHHHHHHHHHCCCC-
Q ss_conf 360243110-0001342014787223046779989999707984696888--846770998899999999999732599-
Q gi|254780812|r 241 KFISFAKGA-GYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNL--DPMRLVVGNQVMIDGVNAILDVLGSGP- 316 (346)
Q Consensus 241 piI~f~~g~-~~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~~~lqGNl--dP~~L~~~~e~i~~~~~~~l~~~~~~~- 316 (346)
.|..+-+|. ...+..+.+ -|+++.-+-|..+.++.....++..+.-|= ||..+ .++.+.++++++ ++.|
T Consensus 173 ~V~viD~GvK~nIlr~L~~-rg~~v~VvP~~~~~~~I~~~~pDGIflSNGPGDP~~~----~~~i~~ik~li~--~~~Pi 245 (355)
T PRK12564 173 HVVAIDFGVKRNILRELAE-RGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPAAL----DYAIEMIKELLE--GKIPI 245 (355)
T ss_pred EEEEEECCCHHHHHHHHHH-CCCEEEEECCCCCHHHHHCCCCCEEEECCCCCCHHHH----HHHHHHHHHHHC--CCCCE
T ss_conf 8999937873889999998-7986999689787657641488889967999996887----999999999852--69878
Q ss_pred CEEEECCCCC
Q ss_conf 2896089763
Q gi|254780812|r 317 FIFNLGHGIT 326 (346)
Q Consensus 317 ~I~nLGhGi~ 326 (346)
+=-.|||-++
T Consensus 246 fGICLGHQll 255 (355)
T PRK12564 246 FGICLGHQLL 255 (355)
T ss_pred EEECHHHHHH
T ss_conf 9988879999
No 368
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=24.24 E-value=52 Score=13.93 Aligned_cols=146 Identities=19% Similarity=0.241 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------
Q ss_conf 3787778764210245320111147999999--9961246776524677530137222899999999999999-------
Q gi|254780812|r 121 LPIFQSISILRKKLPNHITLIGFCGAPWTVA--SYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEY------- 191 (346)
Q Consensus 121 ~~v~eAi~~~k~~l~~~~pLIGF~GgP~Tla--sYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~y------- 191 (346)
+-.+++|+.+|++++++ -+|| +|.=-|.. .-.++-| -+|. --|-...++++.+-+.-+-|
T Consensus 46 p~a~~~I~~l~~~~~~~-~~iG-AGTVlt~e~~~~ai~aG--A~Fi-------VSP~~~~~vi~~a~~~~i~~iPG~~TP 114 (206)
T PRK09140 46 PDPFDSIAALVKALGDD-ALIG-AGTVLSPEQVDRLADAG--GRLI-------VTPNIDPEVIRRAVAYGMTVMPGVATP 114 (206)
T ss_pred CCHHHHHHHHHHHCCCC-EEEE-EEECCCHHHHHHHHHCC--CCEE-------ECCCCCHHHHHHHHHCCCCCCCCCCCH
T ss_conf 76999999999967986-5998-62046799999999859--9999-------999998999999998299652785999
Q ss_pred --HHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC-CCEEECCCCCC-CCCHHHHHCCCCCCEEEC
Q ss_conf --77777549816784383110068356777612722689999863088-62360243110-000134201478722304
Q gi|254780812|r 192 --LIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP-NAKFISFAKGA-GYMLKNYRRLTDSNAIGL 267 (346)
Q Consensus 192 --l~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~-~vpiI~f~~g~-~~~l~~~~~~~g~d~isi 267 (346)
+..-.++|++++.+|= |+.+++.+++.. +.-.| +++++ =++|. ..++.+|.+ .|+.++++
T Consensus 115 sEi~~A~~~Ga~~vKlFP--A~~~Gp~~ikal------------~~p~P~~~~~~-ptGGV~~~N~~~~l~-aGa~avG~ 178 (206)
T PRK09140 115 TEAFAALRAGADALKLFP--ASQLGPAGIKAL------------RAVLPPDVPVF-AVGGVTPENLAPYLA-AGAAGFGL 178 (206)
T ss_pred HHHHHHHHCCCCEEEECC--HHCCCHHHHHHH------------HCCCCCCCEEE-ECCCCCHHHHHHHHH-CCCCEEEE
T ss_conf 999999985987156575--110599999998------------64389999899-537988888999998-69919996
Q ss_pred CCCCCHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 6779989999707984696888846770998899999999999732
Q gi|254780812|r 268 DWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLG 313 (346)
Q Consensus 268 D~~~dl~~a~~~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~ 313 (346)
.+..- +|. .+-+++++.++++.+..+
T Consensus 179 Gs~L~-----------------~~~---~~~~~i~~~a~~fv~a~~ 204 (206)
T PRK09140 179 GSALY-----------------RPG---QSAEEVAERARAFVAAYR 204 (206)
T ss_pred CHHCC-----------------CCC---CCHHHHHHHHHHHHHHHH
T ss_conf 06515-----------------999---999999999999999997
No 369
>COG2167 RPL39 Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]
Probab=24.18 E-value=37 Score=15.02 Aligned_cols=34 Identities=29% Similarity=0.605 Sum_probs=22.1
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHH---CCCCCHHHHHHH
Q ss_conf 057999996699899997614623---123457999997
Q gi|254780812|r 4 RKQKILEVLQGNVINPPPIWLMRQ---AGRYLPEYRQIR 39 (346)
Q Consensus 4 ~~~~~l~al~g~~~~r~PVW~MrQ---AGrylpey~~~r 39 (346)
++.|+.+|++.. -|.|+|.|=- -++|.|--|.-|
T Consensus 9 ~K~RLaKA~KqN--rrvP~Wv~~kT~~~v~~npkRRhWR 45 (51)
T COG2167 9 KKLRLAKALKQN--RRVPVWVRVKTNRRVRYNPKRRHWR 45 (51)
T ss_pred HHHHHHHHHHCC--CCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf 999999999737--8898279996188401584664443
No 370
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.10 E-value=53 Score=13.92 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=45.3
Q ss_pred HHHHHHCCCCEEEECCCCHH---HC---CHHHHHHHHCCCHHHHHHHHHHHCC--CCEEECCCCCCCCCHHHHHC
Q ss_conf 77777549816784383110---06---8356777612722689999863088--62360243110000134201
Q gi|254780812|r 192 LIAQIHAGVDVIQIFDTHAG---CL---GEHEFENYAARSVGRIISAVRRKYP--NAKFISFAKGAGYMLKNYRR 258 (346)
Q Consensus 192 l~~Qi~aGad~iqIFDs~ag---~L---s~~~f~~f~~p~~kkI~~~ik~~~~--~vpiI~f~~g~~~~l~~~~~ 258 (346)
++.--++|.+.+.|+=||.+ ++ ..++=-+|+.|.+++.+..+....+ .+-++.|+-|++...+.+.+
T Consensus 137 aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~LrQ 211 (377)
T COG4782 137 AQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKRIYLLAHSMGTWLLMEALRQ 211 (377)
T ss_pred HHHHHHCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf 988763189820699974788732000145556553389999999999747888628999854427999999999
No 371
>PRK04374 PII uridylyl-transferase; Provisional
Probab=23.90 E-value=53 Score=13.89 Aligned_cols=59 Identities=15% Similarity=0.412 Sum_probs=36.1
Q ss_pred HHHHHHHHCCCCCCCCCCH-HHHHC---CCCCHHHHHHHHHCCCHHHHHC--CHHHHHHHHHHHHHHCC
Q ss_conf 5799999669989999761-46231---2345799999761553899842--79999998721287629
Q gi|254780812|r 5 KQKILEVLQGNVINPPPIW-LMRQA---GRYLPEYRQIRKKFKNFLDMCY--TPEYTVELTLQPIRRYN 67 (346)
Q Consensus 5 ~~~~l~al~g~~~~r~PVW-~MrQA---Grylpey~~~r~~~~~f~~~~~--~pela~evtl~p~~r~~ 67 (346)
.++|+.-+++... .++| .|.+. |||+||+..++..++ +|+.| |++-=+=-++.-+++|.
T Consensus 401 r~~Fl~iL~~p~~--~~~L~~M~~~GvL~~yiPef~~I~g~mQ--fDlfH~YTVDeHTl~~v~~l~~f~ 465 (869)
T PRK04374 401 RERFMALLRGPRA--VETLNRMARLGVLGQWIPAFASVSGRMQ--FDLFHVYTVDQHTLMVLRNIALFA 465 (869)
T ss_pred HHHHHHHHCCCCH--HHHHHHHHHHCCHHHHHHHHHHHHCCCC--CCHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999998079863--7999998872869999889998738724--430230707689999999999985
No 372
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=23.63 E-value=54 Score=13.86 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=38.3
Q ss_pred HCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCC------
Q ss_conf 54981678438311006835677761272268999986308862360243110000134201478722304677------
Q gi|254780812|r 197 HAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWS------ 270 (346)
Q Consensus 197 ~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~------ 270 (346)
..|||+|-+ -+..|++++..+|. +..++.+-.+-+ =+.+-.. ++.-.+ .+++.+|+.++
T Consensus 122 ~~GADaILL---Iaa~L~~~~l~~l~--------~~A~~lGle~Lv--EvH~~~E-l~~al~-~~~~iIGINNRnL~tf~ 186 (247)
T PRK13957 122 AFGASAILL---IVRILTPSQIKSFL--------KHASSLGMDVLV--EVHTEDE-AKLALD-CGAEIIGINTRDLDTFQ 186 (247)
T ss_pred HCCCCEEHH---HHHCCCHHHHHHHH--------HHHHHHCCEEEE--EECCHHH-HHHHHH-CCCCEEEEECCCCCCCC
T ss_conf 739985126---88508999999999--------999983881562--5589999-999984-89988987457732146
Q ss_pred CCHHHHHHH
Q ss_conf 998999970
Q gi|254780812|r 271 VPLSFALEL 279 (346)
Q Consensus 271 ~dl~~a~~~ 279 (346)
+|+....++
T Consensus 187 vd~~~~~~l 195 (247)
T PRK13957 187 IHQNLVEEV 195 (247)
T ss_pred CCHHHHHHH
T ss_conf 398899999
No 373
>PRK06801 hypothetical protein; Provisional
Probab=23.60 E-value=54 Score=13.85 Aligned_cols=125 Identities=14% Similarity=0.239 Sum_probs=63.0
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 0137222899999999999999777775498167843-831100683567776127226899998630886236024311
Q gi|254780812|r 170 AYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIF-DTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKG 248 (346)
Q Consensus 170 ~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIF-Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g 248 (346)
+|.+|+.+.++.+ +.|+|++.+. -+.-|.-..+ -.-.-++++.+++.. ++|+..|. |
T Consensus 154 ~~T~peea~~Fv~--------------~TgvD~LAvaiGn~HG~yk~~------p~L~~~~L~~I~~~~-~vPLVLHG-g 211 (286)
T PRK06801 154 LFTDPAIARDFVD--------------RTGIDALAVAIGNAHGKYKGE------PKLDFARLAAIHQQT-GLPLVLHG-G 211 (286)
T ss_pred CCCCHHHHHHHHH--------------HHCCCEEEEECCCCCCCCCCC------CCCCHHHHHHHHHHC-CCCEEEEC-C
T ss_conf 2689999999999--------------869989975225455676898------867999999999852-99989779-9
Q ss_pred CCCCHHHHHCC--CCCCEEECCCCCCHHHHHHHCCCEE-EECCCCH-HHHCCC-HHHHHHHHHHHHHHHCCCC
Q ss_conf 00001342014--7872230467799899997079846-9688884-677099-8899999999999732599
Q gi|254780812|r 249 AGYMLKNYRRL--TDSNAIGLDWSVPLSFALELQKEGP-VQGNLDP-MRLVVG-NQVMIDGVNAILDVLGSGP 316 (346)
Q Consensus 249 ~~~~l~~~~~~--~g~d~isiD~~~dl~~a~~~~~~~~-lqGNldP-~~L~~~-~e~i~~~~~~~l~~~~~~~ 316 (346)
++-.-+++.+. .|+.=+.++..........+..... =-+..|| ..++.+ .+.+++.+++.++.++..|
T Consensus 212 SGi~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~r~~l~~~~~~~d~~~~l~~~~~~a~k~vv~~ki~lfGS~g 284 (286)
T PRK06801 212 SGISDTDFRRAISLGIHKINFYTGMSQAALAAVEQKMTHRHAIYDEFAELFLGIEEAISDTVAQQMRIFGSSE 284 (286)
T ss_pred CCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999997797699828689999999999999868876795899879999999999999999978798
No 374
>pfam04072 LCM Leucine carboxyl methyltransferase. Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence.
Probab=23.57 E-value=54 Score=13.85 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=42.9
Q ss_pred HCCCCE-EECCCCCCCCCHHHHHCCC-CCCEEECCCCCCHHHHHHHCCCEE--EECCCC--HHHHCCCHHHHHHHHHHHH
Q ss_conf 088623-6024311000013420147-872230467799899997079846--968888--4677099889999999999
Q gi|254780812|r 236 KYPNAK-FISFAKGAGYMLKNYRRLT-DSNAIGLDWSVPLSFALELQKEGP--VQGNLD--PMRLVVGNQVMIDGVNAIL 309 (346)
Q Consensus 236 ~~~~vp-iI~f~~g~~~~l~~~~~~~-g~d~isiD~~~dl~~a~~~~~~~~--lqGNld--P~~L~~~~e~i~~~~~~~l 309 (346)
.+|++. ++...+|-......+.... ++..+-+|...-++.-+++.++.. ...|.- |..+.. . ...+.|
T Consensus 67 ~~~~~~qVV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~k~~~l~~~~~~~~~~~~~v~~Dl~~--~----~w~~~L 140 (175)
T pfam04072 67 AHPGARQVVILGAGLDTRAYRLDWPAGGVRWFEVDLPEVIEFKRRLLPEAGARPPARRRYVAVDLRD--D----DWLDAL 140 (175)
T ss_pred HCCCCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC--H----HHHHHH
T ss_conf 5969878999696433547664698899459994778899999999876368898675884688764--0----579999
Q ss_pred HHHC---CCCCEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 9732---5992896089763366889999999999
Q gi|254780812|r 310 DVLG---SGPFIFNLGHGITPQVDPKNVLDLVKTV 341 (346)
Q Consensus 310 ~~~~---~~~~I~nLGhGi~p~tp~eNv~~~v~~v 341 (346)
...+ +.|-++- --|+++=-++|.+++++..+
T Consensus 141 ~~~g~d~~~ptl~i-~EGvl~Yl~~~~v~~ll~~i 174 (175)
T pfam04072 141 RAAGFDPSRPTLFV-AEGLLMYLTEEAVDALLRRI 174 (175)
T ss_pred HHCCCCCCCCEEEE-ECCCHHCCCHHHHHHHHHHH
T ss_conf 97488989997998-64533379999999999986
No 375
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=23.55 E-value=36 Score=15.05 Aligned_cols=14 Identities=21% Similarity=0.183 Sum_probs=9.7
Q ss_pred HHHHCCCCEEEECC
Q ss_conf 28762987265213
Q gi|254780812|r 62 PIRRYNFDAAILFS 75 (346)
Q Consensus 62 p~~r~~~DaaIlFs 75 (346)
=++...+||.|+++
T Consensus 59 ~l~~~~vdGiIi~~ 72 (275)
T cd06295 59 YLASGRADGVILIG 72 (275)
T ss_pred HHHHCCCCEEEEEC
T ss_conf 99848998899979
No 376
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=23.54 E-value=54 Score=13.84 Aligned_cols=163 Identities=18% Similarity=0.232 Sum_probs=79.7
Q ss_pred CCHHHHHCCHHHHHHH---HHHHHHHCCCCEEEECCCCEECCHHH------CCCEEEECCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 5389984279999998---72128762987265213320010432------44337316887522233333554205670
Q gi|254780812|r 43 KNFLDMCYTPEYTVEL---TLQPIRRYNFDAAILFSDILVIADAL------GRNVRFVENEGPRMDPITTQEIYLLNPNI 113 (346)
Q Consensus 43 ~~f~~~~~~pela~ev---tl~p~~r~~~DaaIlFsDIl~~~eal------G~~v~f~~~~GP~~~p~~~~~~~~~~~~~ 113 (346)
.+|.|..-+|+|...+ |-.|+ .-| -+.|+.+ |.. +.|= | +.+.. ...-.
T Consensus 41 At~vDIA~dp~LV~~v~~~~~lPi---------CVS--aVep~~f~~aV~AGA~--lvEI-G------NfDsF-Y~qGr- 98 (243)
T pfam04481 41 ATYVDIAADPQLVKVVKSVSNIPI---------CVS--AVEPELLYEAVLAGAD--LVEI-G------NFDSF-YKQGR- 98 (243)
T ss_pred CCEEEECCCHHHHHHHHHHCCCCE---------EEE--CCCHHHHHHHHHHCCC--EEEE-C------CHHHH-HHCCC-
T ss_conf 976874179999999997289985---------860--4797888999982787--8986-4------53647-65476-
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12344323787778764210245320111147999999996124677652467753013722289999999999999977
Q gi|254780812|r 114 DLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLI 193 (346)
Q Consensus 114 ~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~ 193 (346)
.+ .-..|++-.+.+|+-|| +++|= |.=|.+|-- .+. ++.+.
T Consensus 99 -~f--~a~eVL~Lt~~Tr~LLP-~~~Ls--VTVPHiL~l------------------d~Q---------------v~LA~ 139 (243)
T pfam04481 99 -VL--SVCEIIALVKETRKLLP-HTPLC--VTIPHILKL------------------KEQ---------------INLAK 139 (243)
T ss_pred -EE--CHHHHHHHHHHHHHHCC-CCCEE--EECCCCCCH------------------HHH---------------HHHHH
T ss_conf -64--49999999999997689-98447--745763567------------------899---------------99999
Q ss_pred HHHHCCCCEEEECCC------CHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf 777549816784383------11006835677761272268999986308862360243110000134201478722304
Q gi|254780812|r 194 AQIHAGVDVIQIFDT------HAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGL 267 (346)
Q Consensus 194 ~Qi~aGad~iqIFDs------~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isi 267 (346)
..+++|||.||-=-. ..|.+ -.-|-+.|.+.--.+ + .+.-++|+++=+ |.+..--.|.-..|+.++++
T Consensus 140 ~L~~~GaDiIQTEGgtss~p~~~g~~---glIekaapTLAaay~-I-S~~v~vPVlcAS-GlS~vT~PmAiaaGAsGVGV 213 (243)
T pfam04481 140 QLESLGIDLIQTEGKITSISKNHCVN---DLIEKSASTLASTYE-I-SKHVQLPVICAS-GLSDVTVPLAFSYGASGIGI 213 (243)
T ss_pred HHHHHCCCEEECCCCCCCCCCCCCHH---HHHHHHHHHHHHHHH-H-HHCCCCCEEECC-CCCHHHHHHHHHCCCCCCCH
T ss_conf 99981887787289877788884257---779887588999999-9-861787667546-76421478899748771006
Q ss_pred CCCCC
Q ss_conf 67799
Q gi|254780812|r 268 DWSVP 272 (346)
Q Consensus 268 D~~~d 272 (346)
++.++
T Consensus 214 GSavn 218 (243)
T pfam04481 214 GSAVS 218 (243)
T ss_pred HHHHH
T ss_conf 57765
No 377
>TIGR01762 chlorin-enz chlorinating enzymes; InterPro: IPR010092 This entry represents a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula . SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae , . CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in P. syringae ..
Probab=23.29 E-value=22 Score=16.56 Aligned_cols=10 Identities=50% Similarity=1.086 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 11479999999
Q gi|254780812|r 142 GFCGAPWTVAS 152 (346)
Q Consensus 142 GF~GgP~Tlas 152 (346)
||+| ||||.+
T Consensus 15 GfIG-PFtly~ 24 (293)
T TIGR01762 15 GFIG-PFTLYE 24 (293)
T ss_pred CCCC-CCCCCC
T ss_conf 8435-757878
No 378
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=23.26 E-value=21 Score=16.68 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=19.1
Q ss_pred CCCC-EEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 4981-6784383110068356777612722689999863088623602431100
Q gi|254780812|r 198 AGVD-VIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAG 250 (346)
Q Consensus 198 aGad-~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~ 250 (346)
|-|| ++.+..+|+.- -+++|.+. .+|+.+.+ .|++|+. +.++.+
T Consensus 153 A~adfVi~~YNP~s~~-R~~~~~~a-----~eil~~~r--~~~tpVg-ivrnag 197 (249)
T COG1010 153 AEADFVIALYNPISKR-RPEQLGRA-----FEILREHR--SPDTPVG-IVRNAG 197 (249)
T ss_pred HHCCEEEEEECCCCCC-CHHHHHHH-----HHHHHHHC--CCCCCEE-EEECCC
T ss_conf 6479799997774313-52789999-----99999855--8998489-983378
No 379
>KOG1436 consensus
Probab=23.23 E-value=28 Score=15.84 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=17.3
Q ss_pred HHCCCCEEEECCCCHHHCCHHHHHHHHCCC
Q ss_conf 754981678438311006835677761272
Q gi|254780812|r 196 IHAGVDVIQIFDTHAGCLGEHEFENYAARS 225 (346)
Q Consensus 196 i~aGad~iqIFDs~ag~Ls~~~f~~f~~p~ 225 (346)
...|... ++|+-.|-.|+.++.++++.-+
T Consensus 247 ~~~~~~~-pvl~kiapDL~~~el~dia~v~ 275 (398)
T KOG1436 247 LPLGKKP-PVLVKIAPDLSEKELKDIALVV 275 (398)
T ss_pred CCCCCCC-CEEEEECCCHHHHHHHHHHHHH
T ss_conf 4568898-6588856524277898999999
No 380
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289 Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis . This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=23.20 E-value=55 Score=13.80 Aligned_cols=159 Identities=13% Similarity=0.236 Sum_probs=77.7
Q ss_pred HHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7787642102453201---11147999999996124677652--467753013722289999999999999977777549
Q gi|254780812|r 125 QSISILRKKLPNHITL---IGFCGAPWTVASYMISGGFIKDH--GQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG 199 (346)
Q Consensus 125 eAi~~~k~~l~~~~pL---IGF~GgP~TlasYmieG~~sk~~--~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG 199 (346)
+-+++.+.. ++-+++ +|-+|| .-|. ...+.=.+.+|+++.++.+ +.|
T Consensus 126 kvve~Ah~~-GDYvSVEaElG~~gG-------------~ED~i~V~~~~~~ladp~Ea~~fV~--------------eT~ 177 (339)
T TIGR01859 126 KVVEIAHAK-GDYVSVEAELGTIGG-------------IEDGIVVVEKEGELADPDEAEQFVK--------------ETG 177 (339)
T ss_pred HHHHHHHHC-CCEEEEEEEECEECC-------------EECCEEEEECCCEECCHHHHHHHHH--------------HCC
T ss_conf 999999851-997999998430352-------------7627378715636758799999997--------------638
Q ss_pred CCEEEEC-CCCHH--HCCHHH----------HHHHHCCCHHHHHHHHHHHCCCCEEECCCCCC--CCCHHHHHC------
Q ss_conf 8167843-83110--068356----------77761272268999986308862360243110--000134201------
Q gi|254780812|r 200 VDVIQIF-DTHAG--CLGEHE----------FENYAARSVGRIISAVRRKYPNAKFISFAKGA--GYMLKNYRR------ 258 (346)
Q Consensus 200 ad~iqIF-Ds~ag--~Ls~~~----------f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~--~~~l~~~~~------ 258 (346)
+|.+.+. =|.-| --..++ +...=. +.+++|++..+|.|+..|..-. ......+.+
T Consensus 178 ~D~LA~aIGt~HGa~kykgeqCtrnaDGvLiWp~LdF----~~l~~I~~~~~G~PLVLHGaS~VP~e~v~~~~~~GG~L~ 253 (339)
T TIGR01859 178 VDYLAAAIGTSHGAFKYKGEQCTRNADGVLIWPGLDF----ERLKEIKELTNGIPLVLHGASSVPAEIVKEVEEYGGELK 253 (339)
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCH----HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 7754010035023578886653304672354888897----899999875089766735765685889999998187677
Q ss_pred --------------CCCCCEEECCCCCCHHHH---HHHCC-----CE--EEECCCCHHHHCCC-HHHHHHHHHHHHH-HH
Q ss_conf --------------478722304677998999---97079-----84--69688884677099-8899999999999-73
Q gi|254780812|r 259 --------------LTDSNAIGLDWSVPLSFA---LELQK-----EG--PVQGNLDPMRLVVG-NQVMIDGVNAILD-VL 312 (346)
Q Consensus 259 --------------~~g~d~isiD~~~dl~~a---~~~~~-----~~--~lqGNldP~~L~~~-~e~i~~~~~~~l~-~~ 312 (346)
..|..=|.+|..+-+.++ |+... +. .=+.-+||.-+|++ .+.|++-++.=++ .+
T Consensus 254 ds~GIP~e~ikkAi~lGiaKiNidTe~riAf~~~~R~~l~dy~a~dl~l~k~~~yDPRK~L~p~~~a~k~~v~~K~~e~f 333 (339)
T TIGR01859 254 DSKGIPEEQIKKAIKLGIAKINIDTECRIAFTAAIRKVLEDYEAKDLELEKKDEYDPRKILGPAREAIKETVKEKMREVF 333 (339)
T ss_pred CCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 77768678999999729141765816789999999999841143554025887446633353168999999998624540
Q ss_pred CCC
Q ss_conf 259
Q gi|254780812|r 313 GSG 315 (346)
Q Consensus 313 ~~~ 315 (346)
++.
T Consensus 334 GS~ 336 (339)
T TIGR01859 334 GSA 336 (339)
T ss_pred CCC
T ss_conf 557
No 381
>pfam11823 DUF3343 Protein of unknown function (DUF3343). This family of proteins are functionally uncharacterized. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=23.12 E-value=55 Score=13.79 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=18.2
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 960897633668899999999997306
Q gi|254780812|r 319 FNLGHGITPQVDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 319 ~nLGhGi~p~tp~eNv~~~v~~vr~~~ 345 (346)
.+.|||+.-..+.++...+.+..++.+
T Consensus 37 is~~CGlai~~~~~~~e~i~~~l~~~~ 63 (73)
T pfam11823 37 ISSGCGLAIKFDLEDLEAIKKILEENG 63 (73)
T ss_pred HCCCCCEEEEECHHHHHHHHHHHHHCC
T ss_conf 547996399978888999999999879
No 382
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=23.01 E-value=55 Score=13.77 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=12.4
Q ss_pred HHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9999777775498167843831
Q gi|254780812|r 188 SAEYLIAQIHAGVDVIQIFDTH 209 (346)
Q Consensus 188 ~~~yl~~Qi~aGad~iqIFDs~ 209 (346)
+.+.+++-.++|||+|.++.+.
T Consensus 177 i~~ia~aa~~~GAdgi~liNT~ 198 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred HHHHHHHHHHCCCCEEEEECCC
T ss_conf 9999999997599889973576
No 383
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=23.00 E-value=55 Score=13.77 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=4.9
Q ss_pred HHCCCEEEEC
Q ss_conf 3244337316
Q gi|254780812|r 83 ALGRNVRFVE 92 (346)
Q Consensus 83 alG~~v~f~~ 92 (346)
.+|.++....
T Consensus 15 ~~g~ki~l~~ 24 (186)
T cd02904 15 FLGQKLSLVQ 24 (186)
T ss_pred CCCCEEEEEE
T ss_conf 0598899997
No 384
>pfam08824 Serine_rich Serine rich protein interaction domain. This is a serine rich domain that is found in the docking protein p130(cas) (Crk-associated substrate). This domain folds into a four helix bundle which is associated with protein-protein interactions.
Probab=22.92 E-value=55 Score=13.76 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=43.9
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 87778764210245320-11114799999999612467765246775301372228999999999999997777754981
Q gi|254780812|r 123 IFQSISILRKKLPNHIT-LIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVD 201 (346)
Q Consensus 123 v~eAi~~~k~~l~~~~p-LIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad 201 (346)
-.|.+..+.+++...|+ |.+||++.|-.-.|| -.+=..++...+.+...+.+|+..--.+.++
T Consensus 6 A~E~L~rLQ~~v~ssVs~Ll~fvs~~WR~~~~l----------------e~~i~~Ir~a~~~v~~sl~efleFa~G~~~N 69 (159)
T pfam08824 6 ALETLARLQQKVESSVSSLMSFVSPNWRTREHL----------------EANINDIRRAVDRVEESLREFLEFARGAVGN 69 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999998865787888988----------------8779999999999999999999987250210
Q ss_pred EEEECCC
Q ss_conf 6784383
Q gi|254780812|r 202 VIQIFDT 208 (346)
Q Consensus 202 ~iqIFDs 208 (346)
+.+.-|+
T Consensus 70 A~~l~D~ 76 (159)
T pfam08824 70 ATQLTDR 76 (159)
T ss_pred HCCCCCH
T ss_conf 1117857
No 385
>TIGR01488 HAD-SF-IB HAD-superfamily hydrolase, subfamily IB (PSPase-like); InterPro: IPR006383 This group represents a subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. ; GO: 0016791 phosphoric monoester hydrolase activity, 0008152 metabolic process.
Probab=22.82 E-value=56 Score=13.75 Aligned_cols=72 Identities=11% Similarity=0.189 Sum_probs=45.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCE-EECCCCCCHHHHH-HHCCCE-EEECCC
Q ss_conf 6835677761272268999986308862360243110000134201478722-3046779989999-707984-696888
Q gi|254780812|r 213 LGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNA-IGLDWSVPLSFAL-ELQKEG-PVQGNL 289 (346)
Q Consensus 213 Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~-isiD~~~dl~~a~-~~~~~~-~lqGNl 289 (346)
+...--..+..|+.+..++.+|++ |..++..++|....+..+.+..|++. ++ ++-..+ ....+. .+.|+.
T Consensus 80 ~~~~~~~~r~~~~~~~~~~~~~~~--G~~~~ivSgg~~~~~~~~~e~~g~~~~F~-----~~~~~~~~~~~~G~~~~g~~ 152 (204)
T TIGR01488 80 LAKEVAIDRLYPGARELIKWLKEK--GIKTVIVSGGLDFLVEPLAEKLGVDEVFK-----EVYANELEFDDNGVLLTGRI 152 (204)
T ss_pred HHHHCCHHHCCHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHHHHCCHHHHHH-----HHHHHEEEEECCCEEECCCC
T ss_conf 864110132253089999999847--99299980886799999997528434432-----22320004542870543654
Q ss_pred CH
Q ss_conf 84
Q gi|254780812|r 290 DP 291 (346)
Q Consensus 290 dP 291 (346)
+-
T Consensus 153 ~~ 154 (204)
T TIGR01488 153 EG 154 (204)
T ss_pred CC
T ss_conf 44
No 386
>pfam02126 PTE Phosphotriesterase family.
Probab=22.68 E-value=56 Score=13.73 Aligned_cols=127 Identities=19% Similarity=0.144 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHH---HHHCCCCEEECCCC-CCC--CCHHHH
Q ss_conf 999999999777775498167843831100683567776127226899998---63088623602431-100--001342
Q gi|254780812|r 183 FLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAV---RRKYPNAKFISFAK-GAG--YMLKNY 256 (346)
Q Consensus 183 ~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~i---k~~~~~vpiI~f~~-g~~--~~l~~~ 256 (346)
...+-+.+.+..+|+.|+|.--| -||+|..---..-.-|.-+|++++. +.. .++||..++. +.. .-..++
T Consensus 100 ~s~e~la~~~i~ei~~Gi~~T~i---kaG~Ik~~~~~~~it~~E~k~lrAaA~A~~~-TG~pI~~H~~~~~~~~~e~l~i 175 (308)
T pfam02126 100 RSVEELTDVFVREIEHGIDGTGI---KAGIIGEIGTSWKLTPSEEKVLEAAAHAHAQ-TGCPVSTHTGASPRAGLQQIRI 175 (308)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCC---CCEEEEEECCCCCCCHHHHHHHHHHHHHHHH-HCCCEEECCCCCCCCHHHHHHH
T ss_conf 69999999999999843668874---5207888305899987899999999999997-6993797079875551999999
Q ss_pred HCCCCCC-----EEECCCCCCHHHHHHHCCCEEEE-----C------CCCHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 0147872-----23046779989999707984696-----8------88846770998899999999999732
Q gi|254780812|r 257 RRLTDSN-----AIGLDWSVPLSFALELQKEGPVQ-----G------NLDPMRLVVGNQVMIDGVNAILDVLG 313 (346)
Q Consensus 257 ~~~~g~d-----~isiD~~~dl~~a~~~~~~~~lq-----G------NldP~~L~~~~e~i~~~~~~~l~~~~ 313 (346)
....|+| .-++|-..|+...+++....+.. | ++.|..=+.+.++-.+.+..+++.+.
T Consensus 176 l~e~Gvd~~rvvigH~D~~~D~~y~~~la~~G~~l~fD~~G~~~~~~~~~~~~~~~~d~~r~~~i~~Li~~Gy 248 (308)
T pfam02126 176 LQEEGVDLSRVVIGHCDDIDDLKYLLELAALGCYLGYDLFGTELLGYQLSPDIDIPPDQKRIRRVHALVDRGY 248 (308)
T ss_pred HHHCCCCHHHEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9985989446788526888998999999974978985356621233444555689998999999999997798
No 387
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=22.57 E-value=56 Score=13.72 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCC-CEEEECCCCCCCC---CHHHHHHHHHHH
Q ss_conf 998899999999999732599-2896089763366---889999999999
Q gi|254780812|r 296 VGNQVMIDGVNAILDVLGSGP-FIFNLGHGITPQV---DPKNVLDLVKTV 341 (346)
Q Consensus 296 ~~~e~i~~~~~~~l~~~~~~~-~I~nLGhGi~p~t---p~eNv~~~v~~v 341 (346)
||-.+|++-|-.+.+-++.+. =||=.|| |+++= =|.-++|+||+|
T Consensus 218 GSVsQVRE~t~~Lmr~AKt~~iaifiVGH-VTKeGsiAGPkvLEH~vD~v 266 (481)
T TIGR00416 218 GSVSQVRECTAELMRLAKTRGIAIFIVGH-VTKEGSIAGPKVLEHMVDTV 266 (481)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCHHHHHHHHHH
T ss_conf 84238889999998765216865799700-43567543404666343311
No 388
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=22.48 E-value=56 Score=13.70 Aligned_cols=16 Identities=19% Similarity=0.652 Sum_probs=8.4
Q ss_pred HHHHHHHCCCCCCCCC
Q ss_conf 7999996699899997
Q gi|254780812|r 6 QKILEVLQGNVINPPP 21 (346)
Q Consensus 6 ~~~l~al~g~~~~r~P 21 (346)
..+...+.|+.+...|
T Consensus 6 ~~~~~~~~~~~~~~~~ 21 (451)
T COG0770 6 DELADILGGALVGADP 21 (451)
T ss_pred HHHHHHHCCCCCCCCC
T ss_conf 9999971781136740
No 389
>pfam03608 EII-GUT PTS system enzyme II sorbitol-specific factor.
Probab=22.43 E-value=46 Score=14.30 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=13.9
Q ss_pred HHHHHHHCCCCCCCCCC-----HHHHH------CCCCCHHHH
Q ss_conf 79999966998999976-----14623------123457999
Q gi|254780812|r 6 QKILEVLQGNVINPPPI-----WLMRQ------AGRYLPEYR 36 (346)
Q Consensus 6 ~~~l~al~g~~~~r~PV-----W~MrQ------AGrylpey~ 36 (346)
+++-+.+-+.+.-|--| |||=- -||++||+.
T Consensus 51 ~~~a~~~~~n~i~RY~vLP~l~~F~l~NPMa~t~GrFlpEk~ 92 (168)
T pfam03608 51 EKLARKAGKNPFTRYLVLPVLSVFFLTNPMAYTLGRFLPEKY 92 (168)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHC
T ss_conf 999999735860478899999999924815877751570210
No 390
>TIGR00336 pyrE orotate phosphoribosyltransferase; InterPro: IPR004467 Orotate phosphoribosyl transferase (OPRTase) is involved in the biosynthesis of pyrimidine nucleotides. Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and orotate are utilised to form pyrophosphate and orotidine 5 -monophosphate (OMP) in the presence of divalent cations, preferably Mg2+. In a number of eukaryotes, this protein is fused to a domain that catalyses the reaction (4.1.1.23 from EC). The combined activity of 2.4.2.10 from EC and 4.1.1.23 from EC is termed uridine 5 -monophosphate synthase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.; GO: 0004588 orotate phosphoribosyltransferase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=22.36 E-value=37 Score=14.98 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEECCCC
Q ss_conf 79999999961246776524677530137222899999999999999777775498-167843831
Q gi|254780812|r 145 GAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGV-DVIQIFDTH 209 (346)
Q Consensus 145 GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGa-d~iqIFDs~ 209 (346)
|-||||+| |+.|.=|...+. ....|+ +.+.+..|+.++++.+. +.-.||=+.
T Consensus 14 G~PF~L~S----G~~S~yy~d~kl-~~t~~~--------~~~~~~~~~~~~~~~~lPe~d~iaG~a 66 (187)
T TIGR00336 14 GEPFILSS----GRKSPYYFDIKL-ANTGPE--------LANLIAEYIAAIIKDHLPEFDVIAGPA 66 (187)
T ss_pred CCCCEECC----CCCCCEEEEEEE-ECCHHH--------HHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 59634168----860553782123-016689--------999999999998641289524664242
No 391
>KOG1517 consensus
Probab=22.10 E-value=57 Score=13.65 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=9.4
Q ss_pred HHHHHHHCCCCCCCCC
Q ss_conf 7999996699899997
Q gi|254780812|r 6 QKILEVLQGNVINPPP 21 (346)
Q Consensus 6 ~~~l~al~g~~~~r~P 21 (346)
+|++|..+..+|..|+
T Consensus 392 eRIMrs~nC~PVS~P~ 407 (1387)
T KOG1517 392 ERIMRSYNCTPVSSPE 407 (1387)
T ss_pred HHHHHHCCCCCCCCCC
T ss_conf 9887642787477889
No 392
>PRK05007 PII uridylyl-transferase; Provisional
Probab=22.10 E-value=43 Score=14.52 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=30.0
Q ss_pred HHHHHHHCCCCCCCCCCH-HHHHC---CCCCHHHHHHHHHCCCHHHHHC--CHHHHHHHHHHHHHHC
Q ss_conf 799999669989999761-46231---2345799999761553899842--7999999872128762
Q gi|254780812|r 6 QKILEVLQGNVINPPPIW-LMRQA---GRYLPEYRQIRKKFKNFLDMCY--TPEYTVELTLQPIRRY 66 (346)
Q Consensus 6 ~~~l~al~g~~~~r~PVW-~MrQA---Grylpey~~~r~~~~~f~~~~~--~pela~evtl~p~~r~ 66 (346)
++|+.-++... .-.++| .|.+. |||+||+.++...++ +|+.| |++-=+=-++.-+++|
T Consensus 410 ~~F~~iL~~p~-~~~~~L~~M~~~GvL~~ylPef~~I~g~mQ--fDlfH~YTVDeHTl~~i~~l~~~ 473 (881)
T PRK05007 410 KLFMEILRHPG-AVSRALSPMHRHSVLSAYLPQWSHIVGQMQ--FDLFHAYTVDEHTIRVLLKIESF 473 (881)
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHCCCHHHHCCHHHHHHCCCC--CCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999981888-579999999872889886624777506635--57762354008899999999998
No 393
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012691 This entry represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see IPR012689 from INTERPRO). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the members of this family are found in the operon for 4-hydroxyphenylacetic acid catabolism.; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process, 0005737 cytoplasm.
Probab=22.03 E-value=57 Score=13.64 Aligned_cols=170 Identities=13% Similarity=0.153 Sum_probs=84.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 77876421024532011114799999999612467765246775301372228999999999999997777754981678
Q gi|254780812|r 125 QSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQ 204 (346)
Q Consensus 125 eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iq 204 (346)
++++..-+++.+.+|+| | |-|+.++..++. +..++ -|+|||+-|
T Consensus 57 ~~~E~~~~~~~GR~P~~-----P---------GTG~~~~~ETl~-------------------~T~~A---~E~GA~~AM 100 (294)
T TIGR02313 57 RVIEVVLDTVAGRVPVI-----P---------GTGALRLDETLE-------------------LTKKA---KEAGADAAM 100 (294)
T ss_pred HHHHHHHHHHCCCCCCC-----C---------CCCCCCHHHHHH-------------------HHHHH---HHCCCCCCE
T ss_conf 99999997616841223-----7---------887654035788-------------------88888---850677215
Q ss_pred ECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECC--CCCCCCCH--H---HHHCCCCCCEEECCCC-CCHHHH
Q ss_conf 43831100683567776127226899998630886236024--31100001--3---4201478722304677-998999
Q gi|254780812|r 205 IFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF--AKGAGYML--K---NYRRLTDSNAIGLDWS-VPLSFA 276 (346)
Q Consensus 205 IFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f--~~g~~~~l--~---~~~~~~g~d~isiD~~-~dl~~a 276 (346)
+.=+.= .-|.| |=.+.|.+++.++ -|++|+|.| ++-++..+ + .+.+.+ .+++++-++ -|+++.
T Consensus 101 VIVPYY--~KPNQ--E~LY~~F~~VA~~----VPD~P~~IYNIPGR~~~~~~~KT~~RL~~D~-PNIVG~K~S~KDlE~~ 171 (294)
T TIGR02313 101 VIVPYY--VKPNQ--EALYDYFKEVADA----VPDIPLLIYNIPGRAAVEIEVKTVARLVKDF-PNIVGLKESSKDLEYL 171 (294)
T ss_pred EEECCC--CCCCH--HHHHHHHHHHHHH----CCCCCEEEECCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCHHHHHH
T ss_conf 774477--79875--6789999999752----3897578852888543411214555554217-7511155542028899
Q ss_pred HH----HCCCEEEECCCC----HHHHCCCHHH-------HHHHHHHHHHHHC--C---C---C-CEEEECCCCCCCCCHH
Q ss_conf 97----079846968888----4677099889-------9999999999732--5---9---9-2896089763366889
Q gi|254780812|r 277 LE----LQKEGPVQGNLD----PMRLVVGNQV-------MIDGVNAILDVLG--S---G---P-FIFNLGHGITPQVDPK 332 (346)
Q Consensus 277 ~~----~~~~~~lqGNld----P~~L~~~~e~-------i~~~~~~~l~~~~--~---~---~-~I~nLGhGi~p~tp~e 332 (346)
.+ .|.|.-+--.+. |.+=+|.--. .=++|-.+.++.. | . - +.+|+.--|-.+|.|-
T Consensus 172 ~~~lL~~GRDFL~F~G~E~L~~PMl~~G~~G~I~ATAN~~PK~VA~l~~~~~~GD~~~A~~LHF~Ll~~N~~~F~DTNP~ 251 (294)
T TIGR02313 172 SRLLLEAGRDFLLFSGLELLTLPMLALGAVGSIAATANVLPKKVALLHEKALEGDIKRARDLHFELLELNDVLFKDTNPI 251 (294)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99998617346566317888667887312123555405770679999988751653468899999987546654068993
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780812|r 333 NVLDLVK 339 (346)
Q Consensus 333 Nv~~~v~ 339 (346)
=|++...
T Consensus 252 P~K~~L~ 258 (294)
T TIGR02313 252 PLKAVLS 258 (294)
T ss_pred HHHHHHH
T ss_conf 0899875
No 394
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases; InterPro: IPR005958 This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate. L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway are included in this family. ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding, 0006519 amino acid and derivative metabolic process.
Probab=21.96 E-value=58 Score=13.63 Aligned_cols=33 Identities=27% Similarity=0.184 Sum_probs=26.5
Q ss_pred CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 7984696888846770998899999999999732
Q gi|254780812|r 280 QKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLG 313 (346)
Q Consensus 280 ~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~ 313 (346)
++...+||-| |.+|..++++.-+.+.++|+.-.
T Consensus 299 gP~Ti~QgAL-P~IL~~Tp~efF~~~~~~lk~na 331 (424)
T TIGR01265 299 GPATIVQGAL-PDILENTPQEFFDKKISVLKENA 331 (424)
T ss_pred CCHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 8157899999-99985168768899999988518
No 395
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=21.65 E-value=58 Score=13.59 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=36.3
Q ss_pred HCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCC------
Q ss_conf 54981678438311006835677761272268999986308862360243110000134201478722304677------
Q gi|254780812|r 197 HAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWS------ 270 (346)
Q Consensus 197 ~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~------ 270 (346)
.+|||+|-+ -+..|++++..+|. +..++.+-.+-+ =+.+-.. ++.-.+ .|++.|++.++
T Consensus 131 ~~GADaiLL---I~~~L~~~~l~~l~--------~~a~~lgl~~Lv--Evh~~~E-l~~a~~-~~a~iIGINnRnL~t~~ 195 (261)
T PRK00278 131 AAGADAILL---IVAALDDEQLKELL--------DLAHELGLDVLV--EVHDEEE-LERALK-LGAPLIGINNRNLKTFE 195 (261)
T ss_pred HCCCCCHHH---HHHHCCHHHHHHHH--------HHHHHHCCEEEE--EECCHHH-HHHHHH-CCCCEEEEECCCCHHCE
T ss_conf 818985789---88755899999999--------999982990797--7689999-999984-79988987467711200
Q ss_pred CCHHHHHHHC
Q ss_conf 9989999707
Q gi|254780812|r 271 VPLSFALELQ 280 (346)
Q Consensus 271 ~dl~~a~~~~ 280 (346)
+|+....++.
T Consensus 196 vd~~~~~~L~ 205 (261)
T PRK00278 196 VDLDTTERLA 205 (261)
T ss_pred ECHHHHHHHH
T ss_conf 3789999999
No 396
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=21.43 E-value=59 Score=13.56 Aligned_cols=136 Identities=18% Similarity=0.214 Sum_probs=64.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 7778764210245320111147-999999996124677652467753013722289999999999999977777549816
Q gi|254780812|r 124 FQSISILRKKLPNHITLIGFCG-APWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDV 202 (346)
Q Consensus 124 ~eAi~~~k~~l~~~~pLIGF~G-gP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~ 202 (346)
.+.|+.+.++ .+|+.|-+| -|=+.-.+ | | |.. -=++.+...+|++ -+++.-+|||-+
T Consensus 122 ~~~i~~l~~~---GIPV~gHiGL~PQ~~~~~---G-G---~r~----qGkt~~ea~~l~~--------dA~~le~AGaf~ 179 (266)
T PRK00311 122 AETIRRLVER---GIPVMGHLGLTPQSVNVL---G-G---YKV----QGRDEEAAEQLLE--------DAKALEEAGAFA 179 (266)
T ss_pred HHHHHHHHHC---CCCEEEEECCCCCCCCCC---C-C---CCC----CCCCHHHHHHHHH--------HHHHHHHCCCEE
T ss_conf 7999999987---997665415765001136---8-8---602----2599999999999--------999998479549
Q ss_pred EEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCC
Q ss_conf 78438311006835677761272268999986308862360243110000134201478722304677998999970798
Q gi|254780812|r 203 IQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKE 282 (346)
Q Consensus 203 iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~~~~~ 282 (346)
| +.+- ++. ++.+.+.+.. .+|+|.+.-|....-. + +.-.|.+++......+++|...
T Consensus 180 i-vlE~----Vp~------------~la~~It~~l-~IPtIGIGAG~~cDGQ-v--LV~~DlLG~~~~~~PkFvk~y~-- 236 (266)
T PRK00311 180 L-VLEC----VPA------------ELAKEITEAL-SIPTIGIGAGPDCDGQ-V--LVMHDMLGLFSGFKPKFVKRYA-- 236 (266)
T ss_pred E-EEEC----CCH------------HHHHHHHHCC-CCCEEEECCCCCCCEE-E--EEHHHHCCCCCCCCCCHHHHHH--
T ss_conf 9-9955----869------------9999999648-9988970558998568-8--8663433899898995899987--
Q ss_pred EEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 46968888467709988999999999997325992
Q gi|254780812|r 283 GPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPF 317 (346)
Q Consensus 283 ~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~ 317 (346)
| -.+.+.+.++++.+..+++.|
T Consensus 237 -----~--------~~~~~~~A~~~y~~dVk~g~F 258 (266)
T PRK00311 237 -----D--------LGGSIREAVKAYAAEVKSGSF 258 (266)
T ss_pred -----H--------HHHHHHHHHHHHHHHHHCCCC
T ss_conf -----2--------799999999999999966999
No 397
>PRK05872 short chain dehydrogenase; Provisional
Probab=21.42 E-value=51 Score=13.99 Aligned_cols=44 Identities=20% Similarity=0.116 Sum_probs=22.8
Q ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHCCCCEEEECCCCHHHCC
Q ss_conf 01372228999999999----9999977777549816784383110068
Q gi|254780812|r 170 AYQNSRAFNWLLDFLSD----VSAEYLIAQIHAGVDVIQIFDTHAGCLG 214 (346)
Q Consensus 170 ~~~~p~~~~~ll~~lt~----~~~~yl~~Qi~aGad~iqIFDs~ag~Ls 214 (346)
...+++.|+++++.-.. .+...+..+++.|-.+|.| -|.++..+
T Consensus 100 ~~~~~e~~~~v~dVNl~G~~~~~ra~lp~m~~~~G~IVni-sS~ag~~~ 147 (296)
T PRK05872 100 LQVDPAAFRRVIDVNLLGVFHTVRATLPAVIERRGYVLQV-SSLAAFAA 147 (296)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-ECHHHHCC
T ss_conf 2199899725842445999999999999999779989999-60543245
No 398
>PRK09354 recA recombinase A; Provisional
Probab=21.40 E-value=59 Score=13.56 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=41.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHH------------HHHCCCHHHHHHHH
Q ss_conf 775301372228999999999999997777754981678438311006835677------------76127226899998
Q gi|254780812|r 166 NRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFE------------NYAARSVGRIISAV 233 (346)
Q Consensus 166 ~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~------------~f~~p~~kkI~~~i 233 (346)
..++++..|+..++.++.+... +++|+--+-|+||-|.+.+..+.+ +..-..++++...+
T Consensus 112 ~d~llv~qpd~~Eqal~i~e~L--------vrsg~vd~IVvDSVaAL~pk~Eieg~mgd~~vG~qARlmSqalRKlt~~i 183 (350)
T PRK09354 112 IDNLLVSQPDTGEQALEIADAL--------VRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 183 (350)
T ss_pred HHHEEEECCCHHHHHHHHHHHH--------HHCCCCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 1571785686799999999999--------85488418998253345768887313354226389999999999999998
Q ss_pred HHHCCCCEEEC
Q ss_conf 63088623602
Q gi|254780812|r 234 RRKYPNAKFIS 244 (346)
Q Consensus 234 k~~~~~vpiI~ 244 (346)
.+. ++.+|.
T Consensus 184 ~ks--~t~~If 192 (350)
T PRK09354 184 NKS--NTTVIF 192 (350)
T ss_pred HCC--CCEEEE
T ss_conf 557--828999
No 399
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=21.28 E-value=47 Score=14.23 Aligned_cols=17 Identities=6% Similarity=0.278 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHCCCCEEE
Q ss_conf 2268999986308862360
Q gi|254780812|r 225 SVGRIISAVRRKYPNAKFI 243 (346)
Q Consensus 225 ~~kkI~~~ik~~~~~vpiI 243 (346)
...++++..|+. ++|++
T Consensus 188 ca~~L~~~AK~~--~i~~~ 204 (372)
T cd01121 188 CTAELMRFAKER--NIPIF 204 (372)
T ss_pred HHHHHHHHHHHC--CCEEE
T ss_conf 999999999861--97399
No 400
>pfam06408 consensus
Probab=21.21 E-value=60 Score=13.53 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=11.0
Q ss_pred HHHHHHHHCCCCEEEECC
Q ss_conf 997777754981678438
Q gi|254780812|r 190 EYLIAQIHAGVDVIQIFD 207 (346)
Q Consensus 190 ~yl~~Qi~aGad~iqIFD 207 (346)
+|.+..-..|+.+|.|.+
T Consensus 187 ~wa~LA~~LgVkvIHiaE 204 (471)
T pfam06408 187 GWAKLAKKLGVKGIHIAE 204 (471)
T ss_pred HHHHHHHHHCCCEEEECC
T ss_conf 899999982995899514
No 401
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; InterPro: IPR010125 This entry represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (IPR010123 from INTERPRO) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerise short-chain-length hydroxyalkanoates.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process.
Probab=21.17 E-value=60 Score=13.53 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=32.2
Q ss_pred HHCCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHH-HHHHHHH
Q ss_conf 3244337316887522233333554205670123443237877787642102-4532011114-7999999
Q gi|254780812|r 83 ALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKL-PNHITLIGFC-GAPWTVA 151 (346)
Q Consensus 83 alG~~v~f~~~~GP~~~p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l-~~~~pLIGF~-GgP~Tla 151 (346)
.-|++|-..+=.-|.- .+..+.. .|...+ |+.+|++.+++.- -+.+.|.|.| ||-|||.
T Consensus 101 ~~G~DVYLiDWGyP~~------~D~~ltL-dDY~~~---YI~~cV~~i~~~~~~d~i~lLG~CqGGTfsL~ 161 (367)
T TIGR01836 101 ERGQDVYLIDWGYPDR------ADRYLTL-DDYVNG---YIDKCVDYICRTSKLDQISLLGICQGGTFSLC 161 (367)
T ss_pred HCCCCEEEEECCCCCH------HHHCCCH-HHHHHH---HHHHHHHHHHHHCCCCCCCEEEEECCHHHHHH
T ss_conf 5698489960689873------3311404-666767---78999999986507896104314310478999
No 402
>KOG2700 consensus
Probab=21.16 E-value=60 Score=13.52 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 011114799999999
Q gi|254780812|r 139 TLIGFCGAPWTVASY 153 (346)
Q Consensus 139 pLIGF~GgP~TlasY 153 (346)
-+-|+-|+-=|.||+
T Consensus 191 ~~~~~kga~gtqasf 205 (481)
T KOG2700 191 RFRGLKGATGTQASF 205 (481)
T ss_pred HCCCCCCCHHHHHHH
T ss_conf 015665213018888
No 403
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=21.08 E-value=60 Score=13.51 Aligned_cols=88 Identities=17% Similarity=0.093 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHH-H-HCCCEEE--ECCCCHHHHCCCH
Q ss_conf 2722689999863088623602431100001342014787223046779989999-7-0798469--6888846770998
Q gi|254780812|r 223 ARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFAL-E-LQKEGPV--QGNLDPMRLVVGN 298 (346)
Q Consensus 223 ~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~-~-~~~~~~l--qGNldP~~L~~~~ 298 (346)
+...++++..+....-+.|+|++-.-.... .+-+-++...++.-.. . +++.+.+ ++.+ +.
T Consensus 432 l~~~RrLf~~L~~~gI~~PVIl~~~y~~~~---------~edllI~~~~~~G~ll~dg~gdgi~~~~~~~~-------~~ 495 (613)
T PRK02048 432 VGEHRALAHQLMVEGLENPVIFFQHYAETD---------AEDLQLKAAADMGALIFDGLCDGIMLFNQGKL-------SH 495 (613)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCC---------HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-------CH
T ss_conf 589999999999769998627874157774---------67788988876404654456655898368875-------27
Q ss_pred HHHHHHHHHHHHHHCC----CCCEEEECCCCC
Q ss_conf 8999999999997325----992896089763
Q gi|254780812|r 299 QVMIDGVNAILDVLGS----GPFIFNLGHGIT 326 (346)
Q Consensus 299 e~i~~~~~~~l~~~~~----~~~I~nLGhGi~ 326 (346)
+.+.+-.-.+|+..+- .-||-..|||=+
T Consensus 496 ~~~~~l~f~iLQa~r~R~~kTeyIsCPsCGRT 527 (613)
T PRK02048 496 VVVDATAFGILQAGRIRTSKTEYISCPGCGRT 527 (613)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
T ss_conf 78888888888875744335627758987652
No 404
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=20.64 E-value=61 Score=13.45 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHH----HHHHHHHHHCCCC----------CCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 378777876421024-53201111479----9999999612467----------76524677530137222899999999
Q gi|254780812|r 121 LPIFQSISILRKKLP-NHITLIGFCGA----PWTVASYMISGGF----------IKDHGQNRVFAYQNSRAFNWLLDFLS 185 (346)
Q Consensus 121 ~~v~eAi~~~k~~l~-~~~pLIGF~Gg----P~TlasYmieG~~----------sk~~~~~~~~~~~~p~~~~~ll~~lt 185 (346)
..+.+-++..+.+.+ ..++++...++ =|+-....++.-+ +-| .+...-+.++|+.++.|++.+.
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPn-t~g~~~l~~~~e~l~~l~~~vk 157 (310)
T COG0167 79 DAFLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPN-TPGGRALGQDPELLEKLLEAVK 157 (310)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCCHHHHCCCHHHHHHHHHHHH
T ss_conf 999999886400147767634887578857889999999975077887999853899-9774665439999999999998
Q ss_pred ---------------HHHHHHHHHHHHCCCCEEEECCCCH
Q ss_conf ---------------9999997777754981678438311
Q gi|254780812|r 186 ---------------DVSAEYLIAQIHAGVDVIQIFDTHA 210 (346)
Q Consensus 186 ---------------~~~~~yl~~Qi~aGad~iqIFDs~a 210 (346)
+-+.+-+++-.++|+|.|-.+-|.-
T Consensus 158 ~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~ 197 (310)
T COG0167 158 AATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTK 197 (310)
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 6356865999388889999999999974985899970036
No 405
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=20.52 E-value=62 Score=13.43 Aligned_cols=42 Identities=14% Similarity=-0.040 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH--HCCHHHHHHHHCC
Q ss_conf 99999999999977777549816784383110--0683567776127
Q gi|254780812|r 180 LLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG--CLGEHEFENYAAR 224 (346)
Q Consensus 180 ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag--~Ls~~~f~~f~~p 224 (346)
+|..+...+.+.+. +.|+.-|.+--=.+| -++++.--+.++.
T Consensus 96 ~L~~~~~~~L~~A~---~~~~~SIAfPaigtG~~g~p~~~aa~i~~~ 139 (175)
T cd02907 96 KLKKAILNSLRKAE---ELGLRSIAIPAISSGIFGFPLERCVETIVE 139 (175)
T ss_pred HHHHHHHHHHHHHH---HCCCCEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999999---859978997751345668898999999999
No 406
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.44 E-value=47 Score=14.27 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 799999987212876298726521
Q gi|254780812|r 51 TPEYTVELTLQPIRRYNFDAAILF 74 (346)
Q Consensus 51 ~pela~evtl~p~~r~~~DaaIlF 74 (346)
+++.-.+ .+.-+...++|+.|+.
T Consensus 40 ~~~~e~~-~l~~l~~~~vdGiIi~ 62 (269)
T cd06281 40 DPERELE-ILRSFEQRRMDGIIIA 62 (269)
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEC
T ss_conf 9899999-9999985799899976
No 407
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.36 E-value=62 Score=13.41 Aligned_cols=12 Identities=50% Similarity=0.797 Sum_probs=9.2
Q ss_pred EEECCCCEECCH
Q ss_conf 652133200104
Q gi|254780812|r 71 AILFSDILVIAD 82 (346)
Q Consensus 71 aIlFsDIl~~~e 82 (346)
-.||||||+=..
T Consensus 23 FfLFnDiLvYg~ 34 (104)
T cd01218 23 FFLFNDILVYGN 34 (104)
T ss_pred EEEECEEEEECC
T ss_conf 997033899712
No 408
>PRK05092 PII uridylyl-transferase; Provisional
Probab=20.28 E-value=35 Score=15.15 Aligned_cols=46 Identities=24% Similarity=0.478 Sum_probs=27.0
Q ss_pred HHHHHHHHCCCCCCCCCCH-HHHHC---CCCCHHHHHHHHHCCCHHHHHC--CHH
Q ss_conf 5799999669989999761-46231---2345799999761553899842--799
Q gi|254780812|r 5 KQKILEVLQGNVINPPPIW-LMRQA---GRYLPEYRQIRKKFKNFLDMCY--TPE 53 (346)
Q Consensus 5 ~~~~l~al~g~~~~r~PVW-~MrQA---Grylpey~~~r~~~~~f~~~~~--~pe 53 (346)
++.|+..|.....- .++| .|.++ |||+||+..++..++ +|+.| |++
T Consensus 447 ~~~Fl~iL~~~~~~-~~~Lr~M~e~GvLg~~iPeF~~I~g~mQ--fD~yH~YTVD 498 (934)
T PRK05092 447 NRLFLDILTSRNNP-ERILRRMNEAGVLGRFIPDFGRIVAMMQ--FNMYHHYTVD 498 (934)
T ss_pred HHHHHHHHCCCCCH-HHHHHHHHHCCCHHHHCCCHHHHEECCC--CCCHHCCCCC
T ss_conf 99999997289866-9999999983871320663253110324--5520127400
No 409
>KOG2023 consensus
Probab=20.25 E-value=42 Score=14.62 Aligned_cols=30 Identities=7% Similarity=0.030 Sum_probs=18.7
Q ss_pred CCCHHHCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 831100683567776127226899998630
Q gi|254780812|r 207 DTHAGCLGEHEFENYAARSVGRIISAVRRK 236 (346)
Q Consensus 207 Ds~ag~Ls~~~f~~f~~p~~kkI~~~ik~~ 236 (346)
||-+..|+...|-+..+|++-+--+.+++.
T Consensus 546 dsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~ 575 (885)
T KOG2023 546 DSVGHALNKPAYIQILMPPLIEKWELLSDS 575 (885)
T ss_pred HHHHHHCCCHHHHHHHCCHHHHHHHHCCCC
T ss_conf 998875076788888454889998756756
No 410
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.22 E-value=48 Score=14.18 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 7999999872128762987265213
Q gi|254780812|r 51 TPEYTVELTLQPIRRYNFDAAILFS 75 (346)
Q Consensus 51 ~pela~evtl~p~~r~~~DaaIlFs 75 (346)
+++.-.+ .++-+...++||.|+.+
T Consensus 40 ~~~~e~~-~i~~l~~~~vdgiIi~~ 63 (270)
T cd06296 40 RTSPERQ-WVERLSARRTDGVILVT 63 (270)
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEEC
T ss_conf 9699999-99999954999999906
No 411
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=20.20 E-value=63 Score=13.39 Aligned_cols=11 Identities=45% Similarity=0.697 Sum_probs=7.1
Q ss_pred HHHHHHHHHHC
Q ss_conf 99872128762
Q gi|254780812|r 56 VELTLQPIRRY 66 (346)
Q Consensus 56 ~evtl~p~~r~ 66 (346)
.|.+|+-+++|
T Consensus 153 pE~SL~~L~~f 163 (404)
T TIGR03278 153 PEASLQCLRRF 163 (404)
T ss_pred HHHHHHHHHHH
T ss_conf 68899999999
No 412
>COG4790 EscR Type III secretory pathway, component EscR [Intracellular trafficking and secretion]
Probab=20.11 E-value=56 Score=13.75 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHH
Q ss_conf 14799999999612467765246775301372228999999999999997777754981678438311006835677761
Q gi|254780812|r 143 FCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYA 222 (346)
Q Consensus 143 F~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~ 222 (346)
|+.+|--++.|- .......-+.+-+.+++..+...+--.+|++.+.+ ++-++-|...+-...|++|++-.
T Consensus 62 FvMaPv~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~pyR~fL~k~t~--~~~~~FF~~~~~~~wp~e~~~~l 131 (214)
T COG4790 62 FVMAPVGLQIYD--------RLQNEELSYTNIASVVKFDDKGLSPYRDFLKKNTE--EEEVSFFERSAQKKWPEEYAEKL 131 (214)
T ss_pred HHHHHHHHHHHH--------HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHCCHHHHHCC
T ss_conf 998277899998--------62441347883899999998513478999997074--99999999999874878887305
Q ss_pred CC
Q ss_conf 27
Q gi|254780812|r 223 AR 224 (346)
Q Consensus 223 ~p 224 (346)
.|
T Consensus 132 k~ 133 (214)
T COG4790 132 KP 133 (214)
T ss_pred CC
T ss_conf 87
No 413
>pfam03102 NeuB NeuB family. NeuB is the prokaryotic N-acetylneuraminic acid (Neu5Ac) synthase. It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesize the 9-phosphate form, Neu5Ac-9-P, and utilize ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.
Probab=20.08 E-value=63 Score=13.37 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=6.4
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9988999999999
Q gi|254780812|r 296 VGNQVMIDGVNAI 308 (346)
Q Consensus 296 ~~~e~i~~~~~~~ 308 (346)
.+++++++-|+.+
T Consensus 217 l~~~e~~~~v~~i 229 (240)
T pfam03102 217 LEPDELKELVKDI 229 (240)
T ss_pred CCHHHHHHHHHHH
T ss_conf 9999999999999
Done!