HHsearch alignment of GI: 254780812 and MMDB domain: 1j93_A_
>1j93_A (A:) UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum}
Probab=100.00 E-value=0 Score=471.23 Aligned_cols=343 Identities=29% Similarity=0.520 Sum_probs=318.5
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEEC
Q ss_conf 97605799999669989999761462312345799999761553899842799999987212876298726521332001
Q gi|254780812|r 1 MNERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVI 80 (346)
Q Consensus 1 M~~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~ 80 (346)
|+++++|+++|++|+++||+|||+++++|+|+++|+.++....++.+++++++++++.++.+.+++|+|++..++|..+.
T Consensus 8 ~mt~rer~~~~l~~~~~drvPv~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~D~~~~~~~~~~~ 87 (353)
T 1j93_A 8 INATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVILFSDILTP 87 (353)
T ss_dssp ---CCCHHHHHHHTCCCSSCCBCCSCCCTTTTTHHHHHHHSSCSTTTTTTCHHHHHHHHHHHHHHHCCSEEECCCCTTTH
T ss_pred CCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCHHHH
T ss_conf 67665299999769989999988760245367999999984563887837999999999749997398879703541366
Q ss_pred CHHHCCCEEEECCCCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0432443373168875222-333335542056701234432378777876421024532011114799999999612467
Q gi|254780812|r 81 ADALGRNVRFVENEGPRMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGF 159 (346)
Q Consensus 81 ~ealG~~v~f~~~~GP~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~ 159 (346)
++++|+++.+.++.||... |+...++.... ......++++.+.+|++.+++++++++|++|+++||||++++++.|++
T Consensus 88 ~e~~g~~~~~~~~~~~~~~~~i~~~~d~~~l-~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~~~~gP~t~~~~~~~~~~ 166 (353)
T 1j93_A 88 LSGMNIPFDIIKGKGPVIFDPLRTAADVEKV-REFIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGS 166 (353)
T ss_dssp HHHTTCCEEEETTTEEEESSCCCSHHHHHHC-CCCCHHHHCHHHHHHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHSBC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHCCC-CCCCHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCC
T ss_conf 8971971013678888756544456552011-467866624359999999998637788746441748999999973665
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 76524677530137222899999999999999777775498167843831100683567776127226899998630886
Q gi|254780812|r 160 IKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPN 239 (346)
Q Consensus 160 sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~ 239 (346)
.+++......++++|+.++++++.+++.+++|+++|+++|||+|+++|+|++.+||++|++|++||++++++++++.++.
T Consensus 167 ~~g~~~~~~~~~~~pe~v~~ll~~~~~~~~~~~~~~~~ag~~~i~~~d~~~~~lsp~~~~e~~~p~~k~i~~~i~~~g~~ 246 (353)
T 1j93_A 167 SKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPN 246 (353)
T ss_dssp CSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 32378888887528278899988758999999999996279889983232534167999876368899999999862799
Q ss_pred CEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 236024311000013420147872230467799899997-0798469688884677099889999999999973259928
Q gi|254780812|r 240 AKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFI 318 (346)
Q Consensus 240 vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I 318 (346)
+.++|+|++..+.++.+.+ .|+|++++++.+|+.++++ .+++++++||+++..+.+++|+|+++++++++.++++|||
T Consensus 247 ~~~~h~~g~~~~~~~~~~~-~g~d~~~~~~~~d~~~~~~~~g~~~~~~G~~~~~~~~~t~eei~~~v~~~~~~~~~~g~I 325 (353)
T 1j93_A 247 LPLILYASGSGGLLERLPL-TGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGKGKHI 325 (353)
T ss_dssp CCEEEECSSCTTTGGGGGG-GCCSEEECCTTSCHHHHHHHTCSSSEEECCBCGGGGGSCHHHHHHHHHHHHHHHCSSSEE
T ss_pred CCEEEECCCCHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 8778505860888788887-377853553111069999983998379938886787699999999999999963999908
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 960897633668899999999997306
Q gi|254780812|r 319 FNLGHGITPQVDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 319 ~nLGhGi~p~tp~eNv~~~v~~vr~~~ 345 (346)
+|+||||+|+||+||+++|++++|+||
T Consensus 326 l~~~c~i~~~~p~eni~a~v~a~~~~r 352 (353)
T 1j93_A 326 LNLGHGIKVGTPEENFAHFFEIAKGLR 352 (353)
T ss_dssp BCBSSCCCTTCCHHHHHHHHHHHHTCC
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 869997799989999999999998537