HHsearch alignment of GI: 254780812 and MMDB domain: 1j93_A_

>1j93_A (A:) UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum}
Probab=100.00  E-value=0  Score=471.23  Aligned_cols=343  Identities=29%  Similarity=0.520  Sum_probs=318.5

Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEEC
Q ss_conf             97605799999669989999761462312345799999761553899842799999987212876298726521332001
Q gi|254780812|r    1 MNERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVI   80 (346)
Q Consensus         1 M~~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~   80 (346)
                      |+++++|+++|++|+++||+|||+++++|+|+++|+.++....++.+++++++++++.++.+.+++|+|++..++|..+.
T Consensus         8 ~mt~rer~~~~l~~~~~drvPv~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~D~~~~~~~~~~~   87 (353)
T 1j93_A            8 INATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVILFSDILTP   87 (353)
T ss_dssp             ---CCCHHHHHHHTCCCSSCCBCCSCCCTTTTTHHHHHHHSSCSTTTTTTCHHHHHHHHHHHHHHHCCSEEECCCCTTTH
T ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCHHHH
T ss_conf             67665299999769989999988760245367999999984563887837999999999749997398879703541366


Q ss_pred             CHHHCCCEEEECCCCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             0432443373168875222-333335542056701234432378777876421024532011114799999999612467
Q gi|254780812|r   81 ADALGRNVRFVENEGPRMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGF  159 (346)
Q Consensus        81 ~ealG~~v~f~~~~GP~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~  159 (346)
                      ++++|+++.+.++.||... |+...++.... ......++++.+.+|++.+++++++++|++|+++||||++++++.|++
T Consensus        88 ~e~~g~~~~~~~~~~~~~~~~i~~~~d~~~l-~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~~~~gP~t~~~~~~~~~~  166 (353)
T 1j93_A           88 LSGMNIPFDIIKGKGPVIFDPLRTAADVEKV-REFIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGS  166 (353)
T ss_dssp             HHHTTCCEEEETTTEEEESSCCCSHHHHHHC-CCCCHHHHCHHHHHHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHSBC
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCHHHHCCC-CCCCHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCC
T ss_conf             8971971013678888756544456552011-467866624359999999998637788746441748999999973665


Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf             76524677530137222899999999999999777775498167843831100683567776127226899998630886
Q gi|254780812|r  160 IKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPN  239 (346)
Q Consensus       160 sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~  239 (346)
                      .+++......++++|+.++++++.+++.+++|+++|+++|||+|+++|+|++.+||++|++|++||++++++++++.++.
T Consensus       167 ~~g~~~~~~~~~~~pe~v~~ll~~~~~~~~~~~~~~~~ag~~~i~~~d~~~~~lsp~~~~e~~~p~~k~i~~~i~~~g~~  246 (353)
T 1j93_A          167 SKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPN  246 (353)
T ss_dssp             CSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTT
T ss_pred             CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             32378888887528278899988758999999999996279889983232534167999876368899999999862799


Q ss_pred             CEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             236024311000013420147872230467799899997-0798469688884677099889999999999973259928
Q gi|254780812|r  240 AKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFI  318 (346)
Q Consensus       240 vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I  318 (346)
                      +.++|+|++..+.++.+.+ .|+|++++++.+|+.++++ .+++++++||+++..+.+++|+|+++++++++.++++|||
T Consensus       247 ~~~~h~~g~~~~~~~~~~~-~g~d~~~~~~~~d~~~~~~~~g~~~~~~G~~~~~~~~~t~eei~~~v~~~~~~~~~~g~I  325 (353)
T 1j93_A          247 LPLILYASGSGGLLERLPL-TGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGKGKHI  325 (353)
T ss_dssp             CCEEEECSSCTTTGGGGGG-GCCSEEECCTTSCHHHHHHHTCSSSEEECCBCGGGGGSCHHHHHHHHHHHHHHHCSSSEE
T ss_pred             CCEEEECCCCHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             8778505860888788887-377853553111069999983998379938886787699999999999999963999908


Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             960897633668899999999997306
Q gi|254780812|r  319 FNLGHGITPQVDPKNVLDLVKTVRSEK  345 (346)
Q Consensus       319 ~nLGhGi~p~tp~eNv~~~v~~vr~~~  345 (346)
                      +|+||||+|+||+||+++|++++|+||
T Consensus       326 l~~~c~i~~~~p~eni~a~v~a~~~~r  352 (353)
T 1j93_A          326 LNLGHGIKVGTPEENFAHFFEIAKGLR  352 (353)
T ss_dssp             BCBSSCCCTTCCHHHHHHHHHHHHTCC
T ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             869997799989999999999998537