HHsearch alignment of GI: 254780812 and MMDB domain: 1ypx_A_
>1ypx_A (A:) Putative vitamin-B12 independent methionine synthase family protein; alpha-beta protein, whose fold resembles A TIM-barrel protein; 2.60A {Listeria monocytogenes egd-e}
Probab=98.20 E-value=1.3e-05 Score=59.83 Aligned_cols=280 Identities=8% Similarity=0.017 Sum_probs=144.9
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHCCCCEEEE--CC--CCEE-CCHHHCCCEEEEC--CCCCCCCCCCCHHHHHCCCCCHHH
Q ss_conf 389984279999998721287629872652--13--3200-1043244337316--887522233333554205670123
Q gi|254780812|r 44 NFLDMCYTPEYTVELTLQPIRRYNFDAAIL--FS--DILV-IADALGRNVRFVE--NEGPRMDPITTQEIYLLNPNIDLF 116 (346)
Q Consensus 44 ~f~~~~~~pela~evtl~p~~r~~~DaaIl--Fs--DIl~-~~ealG~~v~f~~--~~GP~~~p~~~~~~~~~~~~~~~~ 116 (346)
+..++-.-.+-+.+.++.-..+.|+|...- |+ |... ..+.++. +.+.. +..+..+ .......+.....
T Consensus 34 ~~~~l~~~~~~~~~~~v~~q~~aGidii~dge~~~~d~~~~~~~~~~g-i~~~~~~~~~~~~~----~~~~~~~p~~~~~ 108 (375)
T 1ypx_A 34 TALELRKIENTEIKYIVEKQKEVGLKSITDGEFRRAWWHFDFLENLDG-VEGYDAAGGIQFSK----VQTKSHSVKITGP 108 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSEECCTTTTC--CCHHHHTTSEE-EEEC--------------------CEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCEEECC----CCCCCCCCEECCC
T ss_conf 999999999999999999999849984677980010099999987078-76655565346448----8764545054365
Q ss_pred HH-HHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44-3237877787642102453201111-479999999961246776524677530137222899999999999999777
Q gi|254780812|r 117 LN-YLLPIFQSISILRKKLPNHITLIGF-CGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIA 194 (346)
Q Consensus 117 ~~-~l~~v~eAi~~~k~~l~~~~pLIGF-~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~ 194 (346)
.. .-+...+..+.+++..... +..++ +|+|.+++..+. .... -.|.+ ...+++.++++..+.++.
T Consensus 109 ~~~~~~~~~~e~~~~~~~~~~~-~~~k~~~~~~t~l~~~~~-------~~~~--~~y~~---~~~l~~~la~~~~~~i~~ 175 (375)
T 1ypx_A 109 IDFTTHPFIEDFIFLKEAVGDN-HVAKQTIPSPAXLHYRGD-------IEYQ--PYLDD---AEKFANDLATAYQKAIQA 175 (375)
T ss_dssp EECSCCTHHHHHHHHHHHHCSS-SEECEEEECTHHHHHHEE-------ECSH--HHHHC---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCC-CCCCEEECCCHHHHHHHC-------CCCC--CCCCC---HHHHHHHHHHHHHHHHHH
T ss_conf 4578885158999999753017-877548457488887415-------5677--54444---999999999999999999
Q ss_pred HHHCCCCEEEECCCCHH-HCCHHH-------------HHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCC---------
Q ss_conf 77549816784383110-068356-------------7776127226899998630886236-02431100---------
Q gi|254780812|r 195 QIHAGVDVIQIFDTHAG-CLGEHE-------------FENYAARSVGRIISAVRRKYPNAKF-ISFAKGAG--------- 250 (346)
Q Consensus 195 Qi~aGad~iqIFDs~ag-~Ls~~~-------------f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~--------- 250 (346)
..++|++.|||=|+.-. .++.+. ..+.+...++++++.++. ++.+ +|.|.|..
T Consensus 176 L~~~G~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~---~~~i~~H~c~g~~~~~~~~~~~ 252 (375)
T 1ypx_A 176 FYDAGCRYLQLDDTSWSYLCSDEQREVVRQRGFDPETLQETYKNLINEAIKHKPA---DXVITXHICRGNFRSTWIAEGG 252 (375)
T ss_dssp HHHTTCCEEEEEECHHHHTTSCC--------CCSTTTHHHHHHHHHHHHTTTCCT---TCEEEEEECCC----------C
T ss_pred HHHCCCCEEECCCHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC---CEEEEEEEECCCCCCCCCCCCC
T ss_conf 9967997785045376531587888887751257899999999999988617997---6089998512555776445664
Q ss_pred --CCHHHHHCCCCCCEEECCCCCCH-HH---HHHH--CCCEEEECCCCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf --00134201478722304677998-99---9970--798469688884677-099889999999999973259928960
Q gi|254780812|r 251 --YMLKNYRRLTDSNAIGLDWSVPL-SF---ALEL--QKEGPVQGNLDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNL 321 (346)
Q Consensus 251 --~~l~~~~~~~g~d~isiD~~~dl-~~---a~~~--~~~~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nL 321 (346)
..........++|++++|....- .. .++. .++...-|=+|.... ..+.+++.+.++++++.......+.|.
T Consensus 253 ~~~~~~~~l~~l~vd~l~le~~~~~~~~l~~l~~~~~~~k~l~~GvVd~r~~~~e~~e~~~~~i~~~~~~~~~~~~~vsp 332 (375)
T 1ypx_A 253 YGPVAETLFGKLNIDGFFLEYDNERSGDFAPLKYVTRPDLKIVLGLITSKTGELEDEAAIKARIEEASEIVPLSQLRLSP 332 (375)
T ss_dssp CSGGGHHHHTTCCCSEEEEECCSCC---CCTTCCCCCTTCEEEEEEECSSSCC-CCSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHEEEEC
T ss_conf 57789999741476633310155200256666541678829997688689897699999999999999838887799827
Q ss_pred CCCCCC---------CCCHHHHHHHHHHHHHC
Q ss_conf 897633---------66889999999999730
Q gi|254780812|r 322 GHGITP---------QVDPKNVLDLVKTVRSE 344 (346)
Q Consensus 322 GhGi~p---------~tp~eNv~~~v~~vr~~ 344 (346)
.||+.. +.=-++++.+++.+|..
T Consensus 333 ~Cgl~~~p~~~~l~~~~a~~KL~~~~~~a~~~ 364 (375)
T 1ypx_A 333 QCGFASTEEGNILTEEEQWDKLRYVVRLANDI 364 (375)
T ss_dssp SSCCC--------CHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88988776678899999999999999999999