HHsearch alignment of GI: 254780812 and MMDB domain: 3cyv_A_
>3cyv_A (A:) URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=100.00 E-value=0 Score=459.64 Aligned_cols=341 Identities=35% Similarity=0.610 Sum_probs=313.2
Q ss_pred CHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCH
Q ss_conf 60579999966998999976146231234579999976155389984279999998721287629872652133200104
Q gi|254780812|r 3 ERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIAD 82 (346)
Q Consensus 3 ~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~e 82 (346)
++++|++++++|+++||+|||+++++|+|+|||+.++....+|.+++++|+++++.++++.++||.|+...++|..+.++
T Consensus 4 t~~er~~~~l~~~~~DrvP~~~~~~~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~ 83 (354)
T 3cyv_A 4 LKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPD 83 (354)
T ss_dssp CCCCHHHHHHTTCCCSSCCBCCTTCSSTTSHHHHHHHHHHSSHHHHTTCHHHHHHHHHTGGGTSCCSCEECCCCTTHHHH
T ss_pred CCHHHHHHHHCCCCCCCCCEEEEHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCEEEE
T ss_conf 10689999975998999998775310245799999998567899885499999999844798749651342025512565
Q ss_pred HHCCCEEEECCCCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 32443373168875222-33333554205670123443237877787642102453201111479999999961246776
Q gi|254780812|r 83 ALGRNVRFVENEGPRMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIK 161 (346)
Q Consensus 83 alG~~v~f~~~~GP~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk 161 (346)
++|+++.+.++.||.++ ++.+.++... .......+++..++++++.+++++++++|++|+++||||+|+.+++|+..+
T Consensus 84 ~~G~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gP~t~a~~l~~~~~~~ 162 (354)
T 3cyv_A 84 AMGLGLYFEAGEGPRFTSPVTCKADVDK-LPIPDPEDELGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSK 162 (354)
T ss_dssp TTTSCEEECSSSCEEESSCCCSHHHHHT-CCCCCTTTTTHHHHHHHHHHHHHTTTSSCEEEEEECHHHHHHHHHHSSCCS
T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCHH
T ss_conf 1587455437887555576530555302-367667877778898999999860688870345154488999998244016
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCC-C
Q ss_conf 524677530137222899999999999999777775498167843831100683567776127226899998630886-2
Q gi|254780812|r 162 DHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPN-A 240 (346)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~-v 240 (346)
.+......|+++||.++++++.+++.+++|+++++++|||+||++|+|++.+||++|++|+.||++++++.+++.+.. .
T Consensus 163 g~~~~~~~~~~~pe~v~~ll~~~~~~~~~~~~~~~eag~d~I~~~d~~~~~lsp~~~~ef~~p~~k~i~~~i~~~g~~~~ 242 (354)
T 3cyv_A 163 AFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRR 242 (354)
T ss_dssp SCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHSCSEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 78999988876467899999888899999999998604430111215665422777543565547999999986314667
Q ss_pred E-EECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCC-CCC
Q ss_conf 3-6024311000013420147872230467799899997-079846968888467709988999999999997325-992
Q gi|254780812|r 241 K-FISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGS-GPF 317 (346)
Q Consensus 241 p-iI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~-~~~ 317 (346)
+ +.|+|++..+.++.+.+ +|+|+++++...|+.++++ .+++++++||+|+..+++++++++++++++++.++. ++|
T Consensus 243 ~~~~h~~g~~~~~l~~~~~-~g~d~~~~~~~~d~~~~~~~~g~~~~l~G~~~~~~l~~t~eev~~~v~~~~~~~~~~~g~ 321 (354)
T 3cyv_A 243 VPVTLFTKGGGQWLEAMAE-TGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGH 321 (354)
T ss_dssp CCEEEECTTTTTTHHHHHT-TSCSEEECCTTSCHHHHHHHHTTTSEEECCBCGGGGGSCHHHHHHHHHHHHTTTTTSSCE
T ss_pred CCEEEECCCCCHHHHHHHH-CCCCEECCCCCCCHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 7457305885212046675-188611243210099999871898689938986887699999999999999985789996
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8960897633668899999999997306
Q gi|254780812|r 318 IFNLGHGITPQVDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 318 I~nLGhGi~p~tp~eNv~~~v~~vr~~~ 345 (346)
|+|+|||++++||+||+++|++++|+|+
T Consensus 322 Il~~~c~i~~~~p~eni~a~v~a~~~~~ 349 (354)
T 3cyv_A 322 VFNLGHGIHQDVPPEHAGVFVEAVHRLS 349 (354)
T ss_dssp EBCBSSCCCTTSCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9979998899989999999999999971