HHsearch results for GI: 254780812 and protein with PDBid: 3cyv_A
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=100.00 E-value=0 Score=736.74 Aligned_cols=343 Identities=35% Similarity=0.613 Sum_probs=318.6
Q ss_pred CCC-HHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf 976-0579999966998999976146231234579999976155389984279999998721287629872652133200
Q gi|254780812|r 1 MNE-RKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILV 79 (346)
Q Consensus 1 M~~-~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~ 79 (346)
|+. +|+|||+||+||++||+||||||||||||||||++|+++++|+|+|+|||+++|+||||++|||+||||+||||++
T Consensus 1 M~~~~~er~l~al~g~~~dr~PVw~mrqaGr~~pey~~~r~~~~~f~~~~~dpe~~ae~tl~~~~~~g~D~~i~~~di~~ 80 (354)
T 3cyv_A 1 MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILT 80 (354)
T ss_dssp --CCCCCHHHHHHTTCCCSSCCBCCTTCSSTTSHHHHHHHHHHSSHHHHTTCHHHHHHHHHTGGGTSCCSCEECCCCTTH
T ss_pred CCCCHHHHHHHHHCCCCCCCCCEEEEHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 98510789999976998999998864211246899999987466899885499999999854798759777996165010
Q ss_pred CCHHHCCCEEEECCCCCCCCC-CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 104324433731688752223-3333554205670123443237877787642102453201111479999999961246
Q gi|254780812|r 80 IADALGRNVRFVENEGPRMDP-ITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGG 158 (346)
Q Consensus 80 ~~ealG~~v~f~~~~GP~~~p-~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~ 158 (346)
++||||++++|.++.||.+.. ....++... .......+++++|++|++++|+++++++|||||+|||||||+||++|+
T Consensus 81 ~~ea~G~~v~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~v~eai~~~~~~l~~~vpligf~ggP~Tla~~li~g~ 159 (354)
T 3cyv_A 81 VPDAMGLGLYFEAGEGPRFTSPVTCKADVDK-LPIPDPEDELGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGG 159 (354)
T ss_dssp HHHTTTSCEEECSSSCEEESSCCCSHHHHHT-CCCCCTTTTTHHHHHHHHHHHHHTTTSSCEEEEEECHHHHHHHHHHSS
T ss_pred CHHHCCCCEEEECCCCCCCCCCCCCHHHHHH-CCCCCHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCC
T ss_conf 2255398645617999876566777888865-057887774101778999989861787646986587599999996487
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 77652467753013722289999999999999977777549816784383110068356777612722689999863088
Q gi|254780812|r 159 FIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP 238 (346)
Q Consensus 159 ~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~ 238 (346)
.++++.+.+++|+++|+.++++|+++|+++++|+++|+++|||++|||||||++||+++|++|++||+++|++++++..+
T Consensus 160 ~~~~~~~~~~~~~~~p~~~~~ll~~~~~~~~~~~~~qi~~Gad~i~i~D~~a~~ls~~~~~ef~~p~~~~i~~~l~~~~~ 239 (354)
T 3cyv_A 160 SSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLREND 239 (354)
T ss_dssp CCSSCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHSCSEET
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 52368999998632999999999999999999999999639978999602432289899989999879999999986257
Q ss_pred --CCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHC-C
Q ss_conf --6236024311000013420147872230467799899997-07984696888846770998899999999999732-5
Q gi|254780812|r 239 --NAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLG-S 314 (346)
Q Consensus 239 --~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~-~ 314 (346)
++|+|+|++|.+..++.+.+ +|+|++|+||.+|+.++++ ++++++||||+||..|++++|+|+++++++|+.++ +
T Consensus 240 ~~~~~~i~~~~~~~~~l~~~~~-~g~d~ls~d~~~d~~~~~~~~g~~~~l~GNldP~~L~gt~e~i~~~~~~~l~~~~~~ 318 (354)
T 3cyv_A 240 GRRVPVTLFTKGGGQWLEAMAE-TGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHG 318 (354)
T ss_dssp TEECCEEEECTTTTTTHHHHHT-TSCSEEECCTTSCHHHHHHHHTTTSEEECCBCGGGGGSCHHHHHHHHHHHHTTTTTS
T ss_pred CCCCEEEECCCCHHHHHHHHHH-HCCCEECCCCCCCHHHHHHHCCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8871387316870998878886-187600566676999999974899538817886897699999999999999984799
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9928960897633668899999999997306
Q gi|254780812|r 315 GPFIFNLGHGITPQVDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 315 ~~~I~nLGhGi~p~tp~eNv~~~v~~vr~~~ 345 (346)
+||||||||||+|+||+|||++||++||+|+
T Consensus 319 ~g~I~~~Ghgi~p~tp~env~a~veavr~~~ 349 (354)
T 3cyv_A 319 EGHVFNLGHGIHQDVPPEHAGVFVEAVHRLS 349 (354)
T ss_dssp SCEEBCBSSCCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9959979998799989999999999999972