HHsearch results for GI: 254780812 and protein with PDBid: 3cyv_A

>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=100.00  E-value=0  Score=736.74  Aligned_cols=343  Identities=35%  Similarity=0.613  Sum_probs=318.6

Q ss_pred             CCC-HHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf             976-0579999966998999976146231234579999976155389984279999998721287629872652133200
Q gi|254780812|r    1 MNE-RKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILV   79 (346)
Q Consensus         1 M~~-~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~   79 (346)
                      |+. +|+|||+||+||++||+||||||||||||||||++|+++++|+|+|+|||+++|+||||++|||+||||+||||++
T Consensus         1 M~~~~~er~l~al~g~~~dr~PVw~mrqaGr~~pey~~~r~~~~~f~~~~~dpe~~ae~tl~~~~~~g~D~~i~~~di~~   80 (354)
T 3cyv_A            1 MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILT   80 (354)
T ss_dssp             --CCCCCHHHHHHTTCCCSSCCBCCTTCSSTTSHHHHHHHHHHSSHHHHTTCHHHHHHHHHTGGGTSCCSCEECCCCTTH
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCEEEEHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             98510789999976998999998864211246899999987466899885499999999854798759777996165010


Q ss_pred             CCHHHCCCEEEECCCCCCCCC-CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             104324433731688752223-3333554205670123443237877787642102453201111479999999961246
Q gi|254780812|r   80 IADALGRNVRFVENEGPRMDP-ITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGG  158 (346)
Q Consensus        80 ~~ealG~~v~f~~~~GP~~~p-~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~  158 (346)
                      ++||||++++|.++.||.+.. ....++... .......+++++|++|++++|+++++++|||||+|||||||+||++|+
T Consensus        81 ~~ea~G~~v~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~v~eai~~~~~~l~~~vpligf~ggP~Tla~~li~g~  159 (354)
T 3cyv_A           81 VPDAMGLGLYFEAGEGPRFTSPVTCKADVDK-LPIPDPEDELGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGG  159 (354)
T ss_dssp             HHHTTTSCEEECSSSCEEESSCCCSHHHHHT-CCCCCTTTTTHHHHHHHHHHHHHTTTSSCEEEEEECHHHHHHHHHHSS
T ss_pred             CHHHCCCCEEEECCCCCCCCCCCCCHHHHHH-CCCCCHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCC
T ss_conf             2255398645617999876566777888865-057887774101778999989861787646986587599999996487


Q ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             77652467753013722289999999999999977777549816784383110068356777612722689999863088
Q gi|254780812|r  159 FIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYP  238 (346)
Q Consensus       159 ~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~  238 (346)
                      .++++.+.+++|+++|+.++++|+++|+++++|+++|+++|||++|||||||++||+++|++|++||+++|++++++..+
T Consensus       160 ~~~~~~~~~~~~~~~p~~~~~ll~~~~~~~~~~~~~qi~~Gad~i~i~D~~a~~ls~~~~~ef~~p~~~~i~~~l~~~~~  239 (354)
T 3cyv_A          160 SSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLREND  239 (354)
T ss_dssp             CCSSCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHSCSEET
T ss_pred             CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             52368999998632999999999999999999999999639978999602432289899989999879999999986257


Q ss_pred             --CCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHC-C
Q ss_conf             --6236024311000013420147872230467799899997-07984696888846770998899999999999732-5
Q gi|254780812|r  239 --NAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLG-S  314 (346)
Q Consensus       239 --~vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~-~  314 (346)
                        ++|+|+|++|.+..++.+.+ +|+|++|+||.+|+.++++ ++++++||||+||..|++++|+|+++++++|+.++ +
T Consensus       240 ~~~~~~i~~~~~~~~~l~~~~~-~g~d~ls~d~~~d~~~~~~~~g~~~~l~GNldP~~L~gt~e~i~~~~~~~l~~~~~~  318 (354)
T 3cyv_A          240 GRRVPVTLFTKGGGQWLEAMAE-TGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHG  318 (354)
T ss_dssp             TEECCEEEECTTTTTTHHHHHT-TSCSEEECCTTSCHHHHHHHHTTTSEEECCBCGGGGGSCHHHHHHHHHHHHTTTTTS
T ss_pred             CCCCEEEECCCCHHHHHHHHHH-HCCCEECCCCCCCHHHHHHHCCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf             8871387316870998878886-187600566676999999974899538817886897699999999999999984799


Q ss_pred             CCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             9928960897633668899999999997306
Q gi|254780812|r  315 GPFIFNLGHGITPQVDPKNVLDLVKTVRSEK  345 (346)
Q Consensus       315 ~~~I~nLGhGi~p~tp~eNv~~~v~~vr~~~  345 (346)
                      +||||||||||+|+||+|||++||++||+|+
T Consensus       319 ~g~I~~~Ghgi~p~tp~env~a~veavr~~~  349 (354)
T 3cyv_A          319 EGHVFNLGHGIHQDVPPEHAGVFVEAVHRLS  349 (354)
T ss_dssp             SCEEBCBSSCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9959979998799989999999999999972