HHSEARCH alignment of GI: 254780812 and SCOP domain: d1j93a_

Alignment
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]}
Probab=100.00  E-value=0  Score=739.92  Aligned_cols=339  Identities=29%  Similarity=0.509  Sum_probs=318.3

Q ss_pred             HHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHH
Q ss_conf             57999996699899997614623123457999997615538998427999999872128762987265213320010432
Q gi|254780812|r    5 KQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADAL   84 (346)
Q Consensus         5 ~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~~eal   84 (346)
                      +++||+||+||++||+||||||||||||||||++|+++++|.|+|+|||+++|+|+||++|||+||||+||||++++|||
T Consensus         2 ~~~~l~al~g~~~dr~PVw~mrqaGr~~pey~~~r~~~~~f~e~~~~pe~~ae~~l~~~~~f~~D~~i~fsDil~~~ea~   81 (343)
T d1j93a_           2 QPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVILFSDILTPLSGM   81 (343)
T ss_dssp             CCHHHHHHHTCCCSSCCBCCSCCCTTTTTHHHHHHHSSCSTTTTTTCHHHHHHHHHHHHHHHCCSEEECCCCTTTHHHHT
T ss_pred             CHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
T ss_conf             55899997699899999887713555679999999736738878459999999997399875987366304531447876


Q ss_pred             CCCEEEECCCCCCCCCC-CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             44337316887522233-33355420567012344323787778764210245320111147999999996124677652
Q gi|254780812|r   85 GRNVRFVENEGPRMDPI-TTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDH  163 (346)
Q Consensus        85 G~~v~f~~~~GP~~~p~-~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~  163 (346)
                      |++++|.++.||++++. ..........+ ....++++++++|++++|+++++++|||||+|||||+|+||++|++++++
T Consensus        82 G~~~~~~~~~gp~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ai~~~~~~l~~~~~ligf~ggP~Tla~yl~~~~~~~~~  160 (343)
T d1j93a_          82 NIPFDIIKGKGPVIFDPLRTAADVEKVRE-FIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNF  160 (343)
T ss_dssp             TCCEEEETTTEEEESSCCCSHHHHHHCCC-CCHHHHCHHHHHHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHSBCCSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHCCCCC-CCCHHCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCCCH
T ss_conf             37630046887434665456333112235-66042165027889998872355554013317678889999705555653


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             46775301372228999999999999997777754981678438311006835677761272268999986308862360
Q gi|254780812|r  164 GQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFI  243 (346)
Q Consensus       164 ~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI  243 (346)
                      .+.+++++++|+.+|++|+++|+.+++|+++|+++|||+||||||||++||+++|++|+.||+++|++.++++++++|++
T Consensus       161 ~~~~~~~~~~p~~~~~ll~~~t~~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~f~~~~~~~~~~i~~~~~~~~~~~~~~  240 (343)
T d1j93a_         161 TKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLI  240 (343)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEE
T ss_conf             66655554316788888777789999999997504775688540789987667665321488899886544217997344


Q ss_pred             CCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             24311000013420147872230467799899997-07984696888846770998899999999999732599289608
Q gi|254780812|r  244 SFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLG  322 (346)
Q Consensus       244 ~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLG  322 (346)
                      |||++++..++.+.+ ++++++|+||++|+++|++ .+++++||||+||..|++++|+++++++++++.++++|||||||
T Consensus       241 ~~~~~~~~~~~~~~~-~~~~~is~d~~~~l~~a~~~~~~~~~iqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~~lG  319 (343)
T d1j93a_         241 LYASGSGGLLERLPL-TGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGKGKHILNLG  319 (343)
T ss_dssp             EECSSCTTTGGGGGG-GCCSEEECCTTSCHHHHHHHTCSSSEEECCBCGGGGGSCHHHHHHHHHHHHHHHCSSSEEBCBS
T ss_pred             EECCCCCCHHHHHHC-CCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf             201222100123311-4754323422223689999809982799498867876999999999999999649999389799


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             97633668899999999997306
Q gi|254780812|r  323 HGITPQVDPKNVLDLVKTVRSEK  345 (346)
Q Consensus       323 hGi~p~tp~eNv~~~v~~vr~~~  345 (346)
                      |||+|+||+|||++||++||+||
T Consensus       320 hgi~~~Tp~eNv~a~v~~vr~~~  342 (343)
T d1j93a_         320 HGIKVGTPEENFAHFFEIAKGLR  342 (343)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             98798989999999999998437


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Uroporphyrinogen decarboxylase, UROD
domain: Uroporphyrinogen decarboxylase, UROD
species: Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]