HHSEARCH alignment of GI: 254780812 and SCOP domain: d1u1ha1

Alignment
>d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.46  E-value=0.00036  Score=46.99  Aligned_cols=142  Identities=14%  Similarity=0.169  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEECCCC-HHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEE---ECCCCCCCCCHH
Q ss_conf             9999999999999777775498167843831-100683567776127226899998630886236---024311000013
Q gi|254780812|r  179 WLLDFLSDVSAEYLIAQIHAGVDVIQIFDTH-AGCLGEHEFENYAARSVGRIISAVRRKYPNAKF---ISFAKGAGYMLK  254 (346)
Q Consensus       179 ~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~-ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpi---I~f~~g~~~~l~  254 (346)
                      .+++.+.++-.+-++...++||+.|||=||. +..++++.-..|     ++..+.+.+..+++++   +||+...+..+.
T Consensus       178 ~ll~~L~~aY~~~l~~L~~aG~~~VQiDEP~L~~dl~~~~~~~~-----~~ay~~l~~~~~~~~i~l~tyfg~~~~~~~~  252 (394)
T d1u1ha1         178 SLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAF-----TGAYAELESTLSGLNVLVETYFADIPAEAYK  252 (394)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHHHH-----HHHHHHHTTTTTTSEEEEECCSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCHHHHHHH-----HHHHHHHHHHCCCCCCEEEECCCCCCHHHHH
T ss_conf             99999999999999998766598898606202136999999999-----9999999864489974378604887635688


Q ss_pred             HHHCCCCCCEEECCCCCC---HHHHHH-HCC-CEEEECCCCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf             420147872230467799---899997-079-8469688884677-0998899999999999732599289608976
Q gi|254780812|r  255 NYRRLTDSNAIGLDWSVP---LSFALE-LQK-EGPVQGNLDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGI  325 (346)
Q Consensus       255 ~~~~~~g~d~isiD~~~d---l~~a~~-~~~-~~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi  325 (346)
                      .+....++|++++|....   +..... +.. +...-|=+|.... ..+.+++.+..+++.+..+...-+.+..|++
T Consensus       253 ~l~~~~~Vd~l~lD~~~~~~~l~~~~~~~p~~k~L~~GVVdgrniw~ed~e~v~~~i~~~~~~v~~erl~lspsCsL  329 (394)
T d1u1ha1         253 TLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVSTSCSL  329 (394)
T ss_dssp             HHTTCTTCCEEEEETTTCTTHHHHHHHCCCTTCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHSCSSCEEEEESSCG
T ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             88636798735788523851148898758755689754681478886999999999999997379200999389987


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Cobalamin-independent methionine synthase
domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]