HHSEARCH alignment of GI: 254780812 and SCOP domain: d1u1ha2

Alignment
>d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.17  E-value=1.1e-05  Score=57.52  Aligned_cols=182  Identities=15%  Similarity=0.146  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC-HHHCC-----HHH
Q ss_conf             479999999961246776524677530137222899999999999999777775498167843831-10068-----356
Q gi|254780812|r  144 CGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTH-AGCLG-----EHE  217 (346)
Q Consensus       144 ~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~-ag~Ls-----~~~  217 (346)
                      .+||.|++..+..     .       -|.++   .+++.-+..+..+-++...++||+.|||=||. +..++     ++.
T Consensus       163 i~gp~~l~~~~~~-----~-------~y~~~---~e~~~dLa~ay~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~  227 (365)
T d1u1ha2         163 LTGPVTILNWSFV-----R-------NDQPR---HETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAF  227 (365)
T ss_dssp             EECHHHHHHTSEE-----C-------SSSCH---HHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTTTTTCCSSGGGHHH
T ss_pred             CCCEEEEEEECCC-----C-------CCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCHHH
T ss_conf             5503688531266-----6-------88998---9999999999999999999669938995762876432124215999


Q ss_pred             HHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCC-CCCHHHHHCCCCCCEEECCCCCCH-HH---HHH-HC-CCEEEECCC
Q ss_conf             7776127226899998630886236-0243110-000134201478722304677998-99---997-07-984696888
Q gi|254780812|r  218 FENYAARSVGRIISAVRRKYPNAKF-ISFAKGA-GYMLKNYRRLTDSNAIGLDWSVPL-SF---ALE-LQ-KEGPVQGNL  289 (346)
Q Consensus       218 f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~-~~~l~~~~~~~g~d~isiD~~~dl-~~---a~~-~~-~~~~lqGNl  289 (346)
                      +.++....++..+..+..   +..+ +|+|.|. ...+..+.+ ..++.+++|....- ..   .+. .. ++...-|=+
T Consensus       228 ~~~~~~~~~n~~~~~~~~---~~~v~~~~~~g~~~~~~~~l~~-l~vd~l~le~~~~~~~~l~~~~~~~p~~K~l~~GVV  303 (365)
T d1u1ha2         228 YLDWAVHSFRITNCGVQD---STQIHTHMCYSHFNDIIHSIID-MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVY  303 (365)
T ss_dssp             HHHHHHHHHHHHHTTSCT---TSEEEEEESCSCCTTTHHHHHT-TCCSEEEECCSSSCGGGGGGTSSSSCCCSEEEECCS
T ss_pred             HHHHHHHHHHHHHHCCCC---CCEEEEEECCCCCCHHHHHHHC-CCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             999999999999843566---6558997326554124788854-774200011035862788877752889988998888


Q ss_pred             CHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH---HHHHHHHHHHHHC
Q ss_conf             84677-0998899999999999732599289608976336688---9999999999730
Q gi|254780812|r  290 DPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDP---KNVLDLVKTVRSE  344 (346)
Q Consensus       290 dP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~---eNv~~~v~~vr~~  344 (346)
                      |...- ..++|+|.+.+.+.++......-+.|..||..+-+..   ++++++++++|.-
T Consensus       304 d~r~~~~E~~e~v~~ri~~a~~~v~~erl~lspdCGf~~l~~~~a~~KL~~lv~~a~~v  362 (365)
T d1u1ha2         304 DIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLI  362 (365)
T ss_dssp             CTTSSSCCCHHHHHHHHHHHHTTSCTTTBCBCCSSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             27999879999999999999973885539981888999799899999999999999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Cobalamin-independent methionine synthase
domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]