RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780812|ref|YP_003065225.1| uroporphyrinogen decarboxylase [Candidatus Liberibacter asiaticus str. psy62] (346 letters) >gnl|CDD|48141 cd00717, URO-D, Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).. Length = 335 Score = 384 bits (988), Expect = e-107 Identities = 156/340 (45%), Positives = 214/340 (62%), Gaps = 10/340 (2%) Query: 9 LEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNF 68 L L+G ++ PP+W MRQAGRYLPEYR++R K +FL++C PE E+TLQP+RR+ Sbjct: 1 LRALRGEPVDRPPVWFMRQAGRYLPEYRELRAK-YSFLELCKNPELAAEVTLQPVRRFGV 59 Query: 69 DAAILFSDILVIADALGRNVRFVENEGPRMD-PITTQEI--YLLNPNIDLFLNYLLPIFQ 125 DAAI+FSDILV +A+G +V FVE +GP + PI T+ LL P+ + L+Y +++ Sbjct: 60 DAAIIFSDILVPLEAMGMDVEFVEGKGPVIPNPIRTEADVDRLLVPDPEEELSY---VYE 116 Query: 126 SISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLS 185 +I + RK+LP + LIGF GAPWT+ASYMI GG KD + + Y + AF+ LLD L+ Sbjct: 117 AIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLT 176 Query: 186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF 245 D + EYL AQI AG +QIFD+ AG L +FE + + RII V+++ P I F Sbjct: 177 DATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILF 236 Query: 246 AKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDG 304 AKGAG +L++ +L ++ +GLDW V L A + L + +QGNLDP L + + Sbjct: 237 AKGAGGLLEDLAQLG-ADVVGLDWRVDLDEARKRLGPKVALQGNLDPALLYAPKEAIEKE 295 Query: 305 VNAILDVLGSGP-FIFNLGHGITPQVDPKNVLDLVKTVRS 343 V IL G P IFNLGHGI P P+NV LV+ V S Sbjct: 296 VKRILKAFGGAPGHIFNLGHGILPDTPPENVKALVEAVHS 335 >gnl|CDD|30756 COG0407, HemE, Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]. Length = 352 Score = 341 bits (877), Expect = 1e-94 Identities = 144/340 (42%), Positives = 201/340 (59%), Gaps = 4/340 (1%) Query: 7 KILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRY 66 + L L+G ++ P+W+MRQAGRYLPEYR +R+K +FL+ C PE E+TLQP+RRY Sbjct: 9 RFLRALKGKPVDRTPVWMMRQAGRYLPEYRALREKGGSFLEACKNPELAAEVTLQPVRRY 68 Query: 67 NFDAAILFSDILVIADALGRNVRFVENEGPR-MDPITTQEIYLLNPNIDLFLNYLLPIFQ 125 DAAILFSDILV +ALG VRF E +GP + PI +E L + L + Sbjct: 69 GLDAAILFSDILVPPEALGCEVRFGEGKGPSVLKPIRDKEDVELLVPLLDPEGRLPYVLD 128 Query: 126 SISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLS 185 +I +LR+KL + LIGF G+PWT+ASY+I GG KD + + Y A + LLD L+ Sbjct: 129 AIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSKDFSKTKAMMYTEPDAVHALLDKLT 188 Query: 186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISF 245 D EYL AQI AG D +QIFD+ AG L +++ + + RI+ V+ I F Sbjct: 189 DAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGVPVIHF 248 Query: 246 AKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGP-VQGNLDPMRLVVGNQVMIDG 304 KGAG++L++ + + +G+DW V L A + + +QGNLDP L + + + Sbjct: 249 CKGAGHLLEDMAKTG-FDVLGVDWRVDLKEAKKRLGDKVALQGNLDPALLYAPPEAIKEE 307 Query: 305 VNAILDVLGSGP-FIFNLGHGITPQVDPKNVLDLVKTVRS 343 V IL+ G G +IFNLGHGI P+ P+NV LV+ V Sbjct: 308 VKRILEDGGDGSGYIFNLGHGILPETPPENVKALVEAVHE 347 >gnl|CDD|144708 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D). Length = 337 Score = 327 bits (840), Expect = 3e-90 Identities = 141/347 (40%), Positives = 195/347 (56%), Gaps = 18/347 (5%) Query: 2 NERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQ 61 NER +L L+G ++ P+WLMRQAGRYLPEYR +R +FL+ C PE E+TLQ Sbjct: 3 NER---LLRALRGEPVDRVPVWLMRQAGRYLPEYRALRAG-ASFLEACKDPELAAEVTLQ 58 Query: 62 PIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMD--PITTQEIYLLNPNIDLFLNY 119 P RR+ DAAILFSDILV A+A+G V F E EGP ++ T +++ L D + Sbjct: 59 PYRRFGLDAAILFSDILVEAEAMGCEVDFGEGEGPVVENPIRTPEDVDKLEV-PDDEEDR 117 Query: 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISG--GFIKDHGQNRVFAYQNSRAF 177 L + ++I +LRK+L + + LIGF G P+T+ASY++ G F K Y++ Sbjct: 118 LPYVLEAIRLLRKELGDEVPLIGFVGGPFTLASYLVEGFEKFKKL-------MYKDPELV 170 Query: 178 NWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKY 237 + LLD L+D EYL AQI AG D IQIFD+ AG L +F + + RI+ V+ + Sbjct: 171 HALLDKLTDAVIEYLKAQIEAGADAIQIFDSWAGLLSPEDFREFVLPYLKRIVDEVKARG 230 Query: 238 PNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVG 297 P I G G + T ++ I LDW+V L+ A + + +QGNLDP L+ Sbjct: 231 PGPV-ILHICGNGTPILEDMAETGADVISLDWTVDLAEAKRIVGDVALQGNLDPALLLGT 289 Query: 298 NQVMIDGVNAILD-VLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRS 343 + + V IL+ G IFNLGHGI P P+NV LV+ V Sbjct: 290 PEEIEAEVKEILEAAGGGRGHIFNLGHGIPPDTPPENVKALVEAVHE 336 >gnl|CDD|38083 KOG2872, KOG2872, KOG2872, Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]. Length = 359 Score = 267 bits (685), Expect = 2e-72 Identities = 131/343 (38%), Positives = 195/343 (56%), Gaps = 11/343 (3%) Query: 8 ILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYN 67 +L +G ++ PP+W+MRQAGRYLPEY+++R K ++F + C PE E+TLQP+RR+ Sbjct: 15 LLRAAKGEEVDRPPVWIMRQAGRYLPEYQELRAK-QDFFETCRNPELACEITLQPLRRFR 73 Query: 68 FDAAILFSDILVIADALGRNVRFVENEGPRM-DPITTQE-IYLLNPNIDLFLNYLLPIFQ 125 DAAI+FSDILVI ALG V VE +GP +P+ E + L + L + Sbjct: 74 LDAAIIFSDILVIPQALGMPVDMVEGKGPVFPEPLRVPEDLKRLRDPEV-VESELGYVGD 132 Query: 126 SISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLS 185 +I++ R+KL + LIGF GAPWT+ +YMI GG K Q + + +Q + LL L+ Sbjct: 133 AITLTRQKLDGRVPLIGFVGAPWTLMTYMIEGGGSKTFTQAKRWLFQYPEVSHALLQILT 192 Query: 186 DVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAK---- 241 D EYL+ Q+ AG +QIF++ AG L +FE ++ + +I AV+++ P Sbjct: 193 DAIVEYLVYQVVAGAQALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAPV 252 Query: 242 -FISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQ 299 I FAKG+G L+ + T + +GLDW+V + A + +QGNLDP L + Sbjct: 253 PMILFAKGSGGALEELAQ-TGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKE 311 Query: 300 VMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVR 342 + V ++ G +I NLGHGITP P++V V+ V Sbjct: 312 EITQLVKQMVKDFGKSRYIANLGHGITPGTPPEHVAHFVEAVH 354 >gnl|CDD|48148 cd03465, URO-D_like, The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.. Length = 330 Score = 111 bits (279), Expect = 3e-25 Identities = 75/346 (21%), Positives = 145/346 (41%), Gaps = 27/346 (7%) Query: 9 LEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNF 68 L G + P+ + E+ I K + PE E + +++ Sbjct: 1 AAALNGEKPDRVPVGPLLHG--GAAEFIGISLK-----EYYTDPELGAEAQIALYKKFGP 53 Query: 69 DAAILFSDILVIADALGRNVRFVENEGPRM---DPITTQEIYLLNPNIDLFLNYLLPIFQ 125 DA +FSD+ V A+A G +R+ E++ P + +E L P L + + Sbjct: 54 DAIKVFSDLFVEAEAFGAEIRYPEDDTPSVEGPLIEDEEEDDDLLPPDPGDSPRLPELLE 113 Query: 126 SISILRKKLPNHITLIGFCGAPWTVASYMISG-GFIKDHGQNRVFAYQNSRAFNWLLDFL 184 +I +L+++L + + +IG G P+T+AS ++ F+ Y + + LL+ Sbjct: 114 AIRLLKEELGDRVPVIGAVGGPFTLASLLMGASKFLML-------LYTDPELVHKLLEKC 166 Query: 185 SDVSAEYLIAQIHAGVDVIQIFDTHAGC--LGEHEFENYAARSVGRIISAVRRKYPNAKF 242 ++ Y A I AG D I I D A L +F+ ++ + ++ A+ K Sbjct: 167 TEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAI--KALGGPV 224 Query: 243 ISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGP-VQGNLDPMRLVVGN--Q 299 I G + ++ +D +V L+ A + + + GNLDP+ +++ + Sbjct: 225 IHHNCGDTAPILELMADLGADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPE 284 Query: 300 VMIDGVNAILDVLGSGP--FIFNLGHGITPQVDPKNVLDLVKTVRS 343 + + V +L+ L G +I + G I P +N+ ++ VR Sbjct: 285 EIKEEVKELLEKLLKGGGGYILSSGCEIPPDTPIENIKAMIDAVRE 330 >gnl|CDD|73209 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.. Length = 306 Score = 99.7 bits (248), Expect = 1e-21 Identities = 59/319 (18%), Positives = 109/319 (34%), Gaps = 33/319 (10%) Query: 21 PIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAIL-FSDILV 79 P+ Q G E + + + E+ + L D + D+L Sbjct: 1 PVQCEGQTGIM--EASETMAISEEPGE-TSKAEWGITLVEPE--EIPLDVIPVHEDDVLK 55 Query: 80 IADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHIT 139 +A ALG ++ P + I +E P + I+ +R Sbjct: 56 VAQALGEWAFRYYSQAPSVPEIDEEEDPFREA----------PALEHITAVRSLE--EFP 103 Query: 140 LIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG 199 G G P+T + +S G Y+ A + L+++L++ EY I AG Sbjct: 104 TAGAAGGPFTFTHHSMSMGDALM------ALYERPEAMHELIEYLTEFILEYAKTLIEAG 157 Query: 200 VDVIQIFDTHAGC----LGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKN 255 +QI + LG F+ +A + ++ + + L Sbjct: 158 AKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAA--GEVPIVHHSCYDAADLLE 215 Query: 256 YRRLTDSNAIGLDWSV--PLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLG 313 + I D +V P ++ ++ + G +DP L ++ I V +++ LG Sbjct: 216 EMIQLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATDEECIAKVEELVERLG 275 Query: 314 SGPFIFNLGHGITPQVDPK 332 +I N G+ P D K Sbjct: 276 PH-YIINPDCGLGPDSDYK 293 >gnl|CDD|48142 cd03307, Mta_CmuA_like, MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.. Length = 326 Score = 75.2 bits (185), Expect = 2e-14 Identities = 69/331 (20%), Positives = 116/331 (35%), Gaps = 40/331 (12%) Query: 24 LMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADA 83 LM G Y PE E +L F+A + + V A+A Sbjct: 25 LMEATGAYWPEAH-------------SDAEKMADLAAAGHEVAGFEAVRVPFCMTVEAEA 71 Query: 84 LGRNVRF--VENE-GPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITL 140 LG V + + + P E P+ L + + ++I IL++K + + Sbjct: 72 LGCEVDWGTKDIQPSVTSHPFKKLEDVEKLPDDFLERGRIPTVLEAIKILKEKYGEEVPV 131 Query: 141 IGFCGAPWTVASYMIS-----GGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQ 195 IG P ++AS++ IK L+FL++ EY AQ Sbjct: 132 IGGMTGPASLASHLAGVENFLKWLIKK-----------PEKVREFLEFLTEACIEYAKAQ 180 Query: 196 IHAGVDVIQIFDTHAG--CLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYML 253 + AG D+I I D A + +E +A +I+ + I G + Sbjct: 181 LEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELH----GCPTILHICGNTTPI 236 Query: 254 KNYRRLTDSNAIGLDWSVPLSFALELQKEG-PVQGNLDPMRLVVGNQVMIDGVNAILDVL 312 Y + I +D V + A E+ + GN+ P + ++ D L Sbjct: 237 LEYIAQCGFDGISVDEKVDVKTAKEIVGGRAALIGNVSPSQTLLNGTPE-DVKAEARKCL 295 Query: 313 GSGPFIFNLGHGITPQVDPKNVLDLVKTVRS 343 G I G GI P+ N+ +V+ + Sbjct: 296 EDGVDILAPGCGIAPRTPLANLKAMVEARKE 326 >gnl|CDD|34580 COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]. Length = 300 Score = 29.8 bits (67), Expect = 1.0 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 17/102 (16%) Query: 161 KDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFEN 220 + N + +Y+ L DF + + A I+ + T L E + Sbjct: 20 RGLSANTLSSYRRD-----LEDFREWLEERGITDLADATEADIREYLTE---LAE---QG 68 Query: 221 YAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKNYRRLTDS 262 +A S+ R +SA+R F F G + RL DS Sbjct: 69 LSATSIARALSALRS------FYQFLIREGLREDDPTRLLDS 104 >gnl|CDD|34714 COG5111, RPC34, DNA-directed RNA polymerase III, subunit C34 [Transcription]. Length = 301 Score = 27.3 bits (60), Expect = 5.5 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Query: 30 RYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAIL-----FSDILVIADAL 84 R+L + RK F+ ++ Y P+Y TL+ I Y + IL ++ +AD L Sbjct: 181 RFLEKNLFPRKNFEEGPNVFYAPKYEDYPTLEDIMNYVRNVNILSVPLRLDNLESLADVL 240 >gnl|CDD|163678 cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-hydroxy-1,2,6- hexanetricarboxylic acid. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 268 Score = 27.0 bits (61), Expect = 6.8 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 13/63 (20%) Query: 181 LDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNA 240 LDFL +V + A I AG I I DT G L EF G +I ++ PN Sbjct: 142 LDFLIEV----VEAAIEAGATTINIPDT-VGYLTPEEF--------GELIKKLKENVPNI 188 Query: 241 KFI 243 K Sbjct: 189 KVP 191 >gnl|CDD|114419 pfam05693, Glycogen_syn, Glycogen synthase. This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P). Length = 633 Score = 27.0 bits (60), Expect = 7.1 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 13/45 (28%) Query: 185 SDVSAEYLIAQIH---AGV----------DVIQIFDTHAGCLGEH 216 S S+ +IA H AGV DV +F THA LG + Sbjct: 138 SVESSPAVIAHFHEWQAGVGLILCRKRKLDVATVFTTHATLLGRY 182 >gnl|CDD|31521 COG1330, RecC, Exonuclease V gamma subunit [DNA replication, recombination, and repair]. Length = 1078 Score = 26.8 bits (59), Expect = 8.3 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%) Query: 93 NEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHIT 139 E P + P ++I +L P+ID + Y+ +F I R LP ++ Sbjct: 365 EEDPTLQP---RDIVVLVPDIDSYTPYIEAVFGQAPIER-HLPYSLS 407 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.324 0.142 0.428 Gapped Lambda K H 0.267 0.0670 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,459,032 Number of extensions: 248582 Number of successful extensions: 600 Number of sequences better than 10.0: 1 Number of HSP's gapped: 579 Number of HSP's successfully gapped: 25 Length of query: 346 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 251 Effective length of database: 4,210,882 Effective search space: 1056931382 Effective search space used: 1056931382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 58 (26.2 bits)