RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780812|ref|YP_003065225.1| uroporphyrinogen decarboxylase [Candidatus Liberibacter asiaticus str. psy62] (346 letters) >d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} Length = 356 Score = 242 bits (618), Expect = 3e-65 Identities = 121/349 (34%), Positives = 180/349 (51%), Gaps = 10/349 (2%) Query: 1 MNERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTL 60 N+ L G + P+W MRQAGRYLPE+R+ R ++F C +PE ELTL Sbjct: 5 KNDT---FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAA-QDFFSTCRSPEACCELTL 60 Query: 61 QPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMD-PITTQEIYLLNPNIDLFLNY 119 QP+RR+ DAAI+FS ILV+ ALG V V +GP P+ ++ + ++ + Sbjct: 61 QPLRRFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 120 Query: 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNW 179 L +FQ+I++ R++L + LIGF GAPWT+ +YM+ GG Q + + YQ +A + Sbjct: 121 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 180 Query: 180 LLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPN 239 LL L+D YL+ Q+ AG +Q+F++HAG LG F +A + + V+ + Sbjct: 181 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 240 Query: 240 AKFISFAK----GAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRL 294 A G+ +GLDW+V A E + K +QGNLDP L Sbjct: 241 AGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCAL 300 Query: 295 VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRS 343 + + V +LD G +I NLGHG+ P +DP++V V V Sbjct: 301 YASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHK 349 >d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} Length = 343 Score = 233 bits (594), Expect = 2e-62 Identities = 91/338 (26%), Positives = 164/338 (48%) Query: 8 ILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYN 67 +L+ ++G + PP+WLMRQAGRY+ Y+ + +K+ F D + VE++LQP + + Sbjct: 5 LLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFR 64 Query: 68 FDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSI 127 D ILFSDIL + ++ +GP + + + + + +++ Sbjct: 65 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPYVGEAL 124 Query: 128 SILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDV 187 +ILRK++ N ++GF GAP+T+ASY++ GG K+ + + A+ + + LL + Sbjct: 125 TILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFATS 184 Query: 188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247 A+Y+ Q +G +QIFD+ A L +FE ++ + +I+ +V+ +PN I +A Sbjct: 185 MAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYAS 244 Query: 248 GAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNA 307 G+G +L+ L +QGN+DP L + + + +N Sbjct: 245 GSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRIND 304 Query: 308 ILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSEK 345 + G G I NLGHGI +N + + + Sbjct: 305 TVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKGLR 342 >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Length = 170 Score = 28.3 bits (62), Expect = 1.0 Identities = 11/82 (13%), Positives = 20/82 (24%), Gaps = 4/82 (4%) Query: 185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFIS 244 S + + +D H + N AA + G + + P+ S Sbjct: 68 SATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGRNPDFTASS 127 Query: 245 FAKGAGYMLKNYRRLTDSNAIG 266 R+ G Sbjct: 128 QIAFGRAA----HRMKQQGQSG 145 >d1ncqa_ b.121.4.1 (A:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14) [TaxId: 12131]} Length = 273 Score = 26.7 bits (59), Expect = 3.3 Identities = 10/28 (35%), Positives = 15/28 (53%) Query: 32 LPEYRQIRKKFKNFLDMCYTPEYTVELT 59 L Q+RKK + F + + EYT+ T Sbjct: 90 LSSLVQLRKKLELFTYVRFDSEYTILAT 117 >d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Score = 26.4 bits (58), Expect = 4.1 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 13/62 (20%) Query: 130 LRKKLPNHITLIGFCGAPWTV------ASYMISGG---FIKDH----GQNRVFAYQNSRA 176 P + L+ + G WTV ++ G F+KD+ G+ F Y R Sbjct: 32 FPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKYLQFIYDRDRT 91 Query: 177 FN 178 F Sbjct: 92 FY 93 >d2gfna2 a.121.1.1 (A:81-199) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]} Length = 119 Score = 26.2 bits (57), Expect = 4.7 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Query: 277 LELQKEGPVQGNLDPMRLVVGNQVMIDGV--NAILD 310 + Q+EG V +LD + V + DG+ AILD Sbjct: 61 VAAQREGTVSTDLDADAVTVALVALTDGLALQAILD 96 >d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Score = 24.9 bits (54), Expect = 9.8 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 6/99 (6%) Query: 114 DLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASY--MISGGFIKDHGQNRVFAY 171 DL + P + LP + ++G+ + TVA F + Sbjct: 31 DLAKKKIYPTIWWLF-RDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLED 89 Query: 172 QNSRAFNWLLDFLSDVSAEYL---IAQIHAGVDVIQIFD 207 +R + S + L + +H G ++F Sbjct: 90 FFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFY 128 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.142 0.428 Gapped Lambda K H 0.267 0.0426 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,358,717 Number of extensions: 67430 Number of successful extensions: 191 Number of sequences better than 10.0: 1 Number of HSP's gapped: 188 Number of HSP's successfully gapped: 11 Length of query: 346 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 260 Effective length of database: 1,226,816 Effective search space: 318972160 Effective search space used: 318972160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 53 (25.0 bits)