RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780812|ref|YP_003065225.1| uroporphyrinogen decarboxylase
[Candidatus Liberibacter asiaticus str. psy62]
         (346 letters)



>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 356

 Score =  242 bits (618), Expect = 3e-65
 Identities = 121/349 (34%), Positives = 180/349 (51%), Gaps = 10/349 (2%)

Query: 1   MNERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTL 60
            N+     L    G   +  P+W MRQAGRYLPE+R+ R   ++F   C +PE   ELTL
Sbjct: 5   KNDT---FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAA-QDFFSTCRSPEACCELTL 60

Query: 61  QPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMD-PITTQEIYLLNPNIDLFLNY 119
           QP+RR+  DAAI+FS ILV+  ALG  V  V  +GP    P+  ++      + ++  + 
Sbjct: 61  QPLRRFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 120

Query: 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNW 179
           L  +FQ+I++ R++L   + LIGF GAPWT+ +YM+ GG      Q + + YQ  +A + 
Sbjct: 121 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 180

Query: 180 LLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPN 239
           LL  L+D    YL+ Q+ AG   +Q+F++HAG LG   F  +A   +  +   V+ +   
Sbjct: 181 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 240

Query: 240 AKFISFAK----GAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRL 294
           A             G+             +GLDW+V    A E + K   +QGNLDP  L
Sbjct: 241 AGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCAL 300

Query: 295 VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRS 343
               + +   V  +LD  G   +I NLGHG+ P +DP++V   V  V  
Sbjct: 301 YASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHK 349


>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco
           (Nicotiana tabacum), UROD-III [TaxId: 4097]}
          Length = 343

 Score =  233 bits (594), Expect = 2e-62
 Identities = 91/338 (26%), Positives = 164/338 (48%)

Query: 8   ILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYN 67
           +L+ ++G  +  PP+WLMRQAGRY+  Y+ + +K+  F D     +  VE++LQP + + 
Sbjct: 5   LLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFR 64

Query: 68  FDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPIFQSI 127
            D  ILFSDIL     +      ++ +GP +         +      +    +  + +++
Sbjct: 65  PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPYVGEAL 124

Query: 128 SILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDV 187
           +ILRK++ N   ++GF GAP+T+ASY++ GG  K+  + +  A+   +  + LL   +  
Sbjct: 125 TILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFATS 184

Query: 188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAK 247
            A+Y+  Q  +G   +QIFD+ A  L   +FE ++   + +I+ +V+  +PN   I +A 
Sbjct: 185 MAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYAS 244

Query: 248 GAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMIDGVNA 307
           G+G +L+                        L     +QGN+DP  L    + + + +N 
Sbjct: 245 GSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRIND 304

Query: 308 ILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSEK 345
            +   G G  I NLGHGI      +N     +  +  +
Sbjct: 305 TVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKGLR 342


>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
           dehydrogenase (DAPDH) {Corynebacterium glutamicum
           [TaxId: 1718]}
          Length = 170

 Score = 28.3 bits (62), Expect = 1.0
 Identities = 11/82 (13%), Positives = 20/82 (24%), Gaps = 4/82 (4%)

Query: 185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFIS 244
           S         +       +  +D H       +  N AA + G +      + P+    S
Sbjct: 68  SATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGRNPDFTASS 127

Query: 245 FAKGAGYMLKNYRRLTDSNAIG 266
                        R+      G
Sbjct: 128 QIAFGRAA----HRMKQQGQSG 145


>d1ncqa_ b.121.4.1 (A:) Rhinovirus coat proteins {Human rhinovirus B
           14 (HRV-14) [TaxId: 12131]}
          Length = 273

 Score = 26.7 bits (59), Expect = 3.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 32  LPEYRQIRKKFKNFLDMCYTPEYTVELT 59
           L    Q+RKK + F  + +  EYT+  T
Sbjct: 90  LSSLVQLRKKLELFTYVRFDSEYTILAT 117


>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis
           thaliana) [TaxId: 3702]}
          Length = 102

 Score = 26.4 bits (58), Expect = 4.1
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 13/62 (20%)

Query: 130 LRKKLPNHITLIGFCGAPWTV------ASYMISGG---FIKDH----GQNRVFAYQNSRA 176
                P  + L+ + G  WTV          ++ G   F+KD+    G+   F Y   R 
Sbjct: 32  FPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKYLQFIYDRDRT 91

Query: 177 FN 178
           F 
Sbjct: 92  FY 93


>d2gfna2 a.121.1.1 (A:81-199) Probable transcriptional regulator
           RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
          Length = 119

 Score = 26.2 bits (57), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 277 LELQKEGPVQGNLDPMRLVVGNQVMIDGV--NAILD 310
           +  Q+EG V  +LD   + V    + DG+   AILD
Sbjct: 61  VAAQREGTVSTDLDADAVTVALVALTDGLALQAILD 96


>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate
           dehydrogenase, N-terminal domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 203

 Score = 24.9 bits (54), Expect = 9.8
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 6/99 (6%)

Query: 114 DLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASY--MISGGFIKDHGQNRVFAY 171
           DL    + P    +      LP +  ++G+  +  TVA         F     +      
Sbjct: 31  DLAKKKIYPTIWWLF-RDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLED 89

Query: 172 QNSRAFNWLLDFLSDVSAEYL---IAQIHAGVDVIQIFD 207
             +R       +    S + L   +  +H G    ++F 
Sbjct: 90  FFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFY 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0426    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,358,717
Number of extensions: 67430
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 11
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)