Query gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 199 No_of_seqs 107 out of 3404 Neff 6.6 Searched_HMMs 39220 Date Sun May 29 18:06:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780813.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK02478 Maf-like protein; Rev 100.0 0 0 429.6 18.5 198 1-199 1-198 (199) 2 COG0424 Maf Nucleotide-binding 100.0 0 0 411.7 17.2 189 1-198 1-190 (193) 3 PRK00148 Maf-like protein; Rev 100.0 0 0 408.8 17.7 187 2-197 1-188 (195) 4 PRK04222 consensus 100.0 0 0 406.5 17.5 187 1-197 1-188 (191) 5 PRK02676 consensus 100.0 0 0 405.4 17.9 188 1-197 1-190 (196) 6 PRK03411 consensus 100.0 0 0 405.6 17.5 187 2-197 1-189 (194) 7 PRK00884 Maf-like protein; Rev 100.0 0 0 404.7 17.6 187 2-197 1-189 (194) 8 PRK00032 Maf-like protein; Rev 100.0 0 0 402.9 17.7 188 2-199 1-189 (189) 9 PRK00234 Maf-like protein; Rev 100.0 0 0 402.5 17.8 187 2-197 1-189 (192) 10 PRK04425 Maf-like protein; Rev 100.0 0 0 400.6 17.8 189 1-197 3-193 (196) 11 PRK03442 consensus 100.0 0 0 399.8 17.8 192 2-197 1-201 (213) 12 PRK00238 consensus 100.0 0 0 399.8 17.8 187 2-198 1-190 (198) 13 PRK03415 consensus 100.0 0 0 399.3 17.7 187 2-198 1-188 (197) 14 PRK01839 Maf-like protein; Rev 100.0 0 0 398.0 18.3 194 1-197 8-207 (209) 15 PRK00648 Maf-like protein; Rev 100.0 0 0 393.5 17.5 188 1-197 1-189 (191) 16 PRK02141 Maf-like protein; Rev 100.0 0 0 393.2 17.4 186 3-197 9-199 (206) 17 PRK01441 Maf-like protein; Rev 100.0 0 0 391.0 17.8 186 3-197 5-197 (207) 18 PRK03098 consensus 100.0 0 0 392.4 16.1 182 6-197 1-182 (185) 19 PRK00078 Maf-like protein; Rev 100.0 0 0 391.3 17.0 187 3-197 1-190 (192) 20 PRK04694 Maf-like protein; Rev 100.0 0 0 390.4 17.6 184 5-197 2-189 (190) 21 pfam02545 Maf Maf-like protein 100.0 0 0 388.0 17.0 186 3-197 1-188 (193) 22 PRK04719 consensus 100.0 0 0 387.0 17.2 184 2-195 3-187 (188) 23 PRK01526 Maf-like protein; Rev 100.0 0 0 384.2 17.7 186 3-197 8-198 (205) 24 cd00555 Maf Nucleotide binding 100.0 0 0 383.4 15.8 179 5-192 1-180 (180) 25 PRK04056 Maf-like protein; Rev 100.0 0 0 378.5 15.8 178 5-192 2-180 (180) 26 PRK03797 consensus 100.0 0 0 376.4 16.7 180 5-197 2-181 (186) 27 PRK01946 consensus 100.0 0 0 366.9 17.0 183 3-195 9-194 (195) 28 TIGR00172 maf septum formation 100.0 0 0 366.8 10.5 187 1-193 1-212 (212) 29 KOG1509 consensus 100.0 6.2E-44 0 293.4 13.3 188 1-195 8-205 (209) 30 cd00985 Maf_Ham1 Maf_Ham1. Maf 100.0 1.2E-29 3.1E-34 204.8 11.9 122 5-134 1-123 (131) 31 PRK00120 putative deoxyribonuc 96.5 0.029 7.4E-07 35.1 8.6 114 1-126 1-135 (197) 32 cd00515 HAM1 NTPase/HAM1. Thi 95.3 0.18 4.5E-06 30.2 8.5 107 5-126 1-126 (183) 33 COG0127 Xanthosine triphosphat 89.7 1.9 4.8E-05 23.8 10.5 113 2-124 1-130 (194) 34 pfam01725 Ham1p_like Ham1 fami 86.4 3 7.8E-05 22.6 8.1 106 5-125 1-122 (181) 35 TIGR01139 cysK cysteine syntha 85.8 2.2 5.5E-05 23.5 5.3 163 8-198 91-269 (312) 36 TIGR00212 hemC porphobilinogen 77.7 2.1 5.4E-05 23.5 2.8 112 5-120 121-255 (312) 37 COG0031 CysK Cysteine synthase 69.8 3.8 9.6E-05 22.0 2.4 155 8-198 94-261 (300) 38 pfam01379 Porphobil_deam Porph 67.3 5.6 0.00014 20.9 2.9 61 16-76 21-93 (213) 39 TIGR01136 cysKM cysteine synth 66.7 11 0.00027 19.2 4.3 147 8-183 94-251 (315) 40 PRK01066 porphobilinogen deami 64.7 6.3 0.00016 20.6 2.7 59 4-62 20-91 (234) 41 COG2425 Uncharacterized protei 60.5 14 0.00035 18.5 3.8 63 47-110 287-349 (437) 42 COG1492 CobQ Cobyric acid synt 59.9 5.2 0.00013 21.1 1.6 48 139-187 315-362 (486) 43 cd00494 HMBS Hydroxymethylbila 58.3 7.8 0.0002 20.0 2.3 112 4-121 117-251 (292) 44 COG0181 HemC Porphobilinogen d 57.6 8.5 0.00022 19.8 2.4 113 5-123 121-256 (307) 45 PRK02491 putative deoxyribonuc 57.0 18 0.00045 17.8 7.5 105 3-122 128-258 (328) 46 PRK00072 hemC porphobilinogen 55.3 12 0.0003 18.9 2.8 32 5-36 122-155 (300) 47 KOG1252 consensus 54.3 8.4 0.00021 19.8 1.9 137 8-173 136-276 (362) 48 TIGR00313 cobQ cobyric acid sy 53.5 2.2 5.7E-05 23.4 -1.1 53 139-194 312-366 (502) 49 cd04911 ACT_AKiii-YclM-BS_1 AC 51.5 11 0.00028 19.1 2.2 23 15-37 22-44 (76) 50 cd06532 Glyco_transf_25 Glycos 49.7 23 0.00059 17.1 5.8 79 6-84 6-98 (128) 51 TIGR01318 gltD_gamma_fam gluta 47.1 11 0.00027 19.2 1.5 97 12-112 197-299 (480) 52 TIGR03297 Ppyr-DeCO2ase phosph 45.3 27 0.00069 16.7 5.8 141 14-192 107-264 (361) 53 PHA01516 hypothetical protein 42.9 8 0.00021 19.9 0.4 17 170-186 42-58 (98) 54 PRK04262 hypothetical protein; 41.7 31 0.00078 16.3 3.9 16 64-79 128-143 (346) 55 TIGR01162 purE phosphoribosyla 34.6 39 0.001 15.7 4.6 44 5-61 3-51 (159) 56 cd02064 Flavokinase_C Riboflav 33.9 41 0.001 15.6 4.1 76 7-107 53-128 (179) 57 COG4285 Uncharacterized conser 33.8 41 0.001 15.6 4.3 85 90-182 13-111 (253) 58 COG0041 PurE Phosphoribosylcar 33.5 41 0.001 15.5 3.2 43 4-59 6-53 (162) 59 pfam03438 Pneumo_NS1 Pneumovir 30.7 32 0.00082 16.2 1.8 39 111-149 77-129 (136) 60 COG4090 Uncharacterized protei 30.7 34 0.00085 16.1 1.9 41 75-118 85-126 (154) 61 COG4186 Predicted phosphoester 28.7 40 0.001 15.6 2.0 40 73-112 42-81 (186) 62 PRK07028 bifunctional hexulose 26.8 54 0.0014 14.8 3.4 81 12-102 121-208 (429) 63 pfam00469 F-protein Negative f 26.5 54 0.0014 14.8 2.6 15 86-100 91-105 (220) 64 PRK02910 light-independent pro 26.3 35 0.0009 16.0 1.4 10 49-58 137-146 (524) 65 KOG0335 consensus 26.1 55 0.0014 14.8 4.3 106 74-195 348-459 (482) 66 cd03084 phosphohexomutase The 26.0 55 0.0014 14.7 6.0 28 8-35 122-149 (355) 67 PRK00784 cobyric acid synthase 25.8 39 0.00098 15.7 1.5 47 139-186 317-363 (492) 68 cd00128 XPG Xeroderma pigmento 24.6 29 0.00074 16.5 0.7 16 13-28 61-76 (316) 69 COG1926 Predicted phosphoribos 24.5 28 0.00072 16.6 0.6 60 82-149 152-211 (220) 70 TIGR02724 phenyl_P_beta phenyl 24.3 32 0.00082 16.2 0.9 30 64-93 187-216 (472) 71 COG1049 AcnB Aconitase B [Ener 24.1 55 0.0014 14.8 2.1 86 82-169 668-762 (852) 72 pfam10288 DUF2392 Protein of u 24.0 37 0.00095 15.8 1.2 49 134-182 37-95 (104) 73 TIGR02074 PBP_1a_fam penicilli 23.7 32 0.00081 16.2 0.8 32 137-172 96-128 (700) 74 TIGR01761 thiaz-red thiazoliny 23.6 62 0.0016 14.5 2.3 135 6-170 43-204 (378) 75 pfam01755 Glyco_transf_25 Glyc 23.4 62 0.0016 14.4 4.4 69 7-75 9-93 (200) 76 PRK09722 allulose-6-phosphate 22.7 35 0.00089 16.0 0.8 16 48-63 68-83 (227) 77 cd03043 GST_N_1 GST_N family, 22.6 64 0.0016 14.3 2.4 27 9-35 10-37 (73) 78 TIGR00011 YbaK_EbsC ybaK/ebsC 22.1 66 0.0017 14.3 2.2 78 16-108 5-82 (156) 79 TIGR02903 spore_lon_C ATP-depe 22.0 58 0.0015 14.6 1.8 75 87-165 301-390 (616) 80 TIGR02250 FCP1_euk FCP1-like p 21.2 45 0.0012 15.3 1.1 49 81-132 111-162 (170) 81 TIGR00958 3a01208 antigen pept 20.9 70 0.0018 14.1 2.2 61 107-182 602-665 (770) 82 TIGR01469 cobA_cysG_Cterm urop 20.3 70 0.0018 14.1 2.0 64 70-143 159-222 (242) 83 PRK03980 flap endonuclease-1; 20.1 50 0.0013 15.0 1.2 12 16-27 90-101 (295) No 1 >PRK02478 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=429.60 Aligned_cols=198 Identities=50% Similarity=0.846 Sum_probs=190.5 Q ss_pred CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHH Q ss_conf 98754742699899999997898859975898843242201344579989998887654333210137754034134431 Q gi|254780813|r 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTM 80 (199) Q Consensus 1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv 80 (199) |+++|||||+||||++||+++|++|+++||+|||++++.++. ....+|.+++.++|+.||.+++.++|+.+|||||||| T Consensus 1 mt~kiILAS~SprR~eLL~~~gi~f~v~~~diDE~~~~~~l~-~~~~~p~~~~~~lA~~Ka~~v~~~~~~~lVI~aDtvv 79 (199) T PRK02478 1 MTVKLILASKSPFRRALLKNAGLEFSAAAADIDERAVEAPLE-ESGATPEDVALVLAEAKAIDVSEKFPGALVIGCDQTL 79 (199) T ss_pred CCCCEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEE T ss_conf 998799737999999999978998099637999985545544-4799999999999999999999758998897378589 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 01234467610013469999985198037888665303786100468741100122205789999962068867332100 Q gi|254780813|r 81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY 160 (199) Q Consensus 81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y 160 (199) +++|+|+|||.|+++|++||+.|||++|+|+||+|++.+++.+|.++++|+|+|+++++++|++|+++.+++|++||||| T Consensus 80 ~~~g~ilgKP~~~~eA~~mL~~lsGk~H~v~T~v~l~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yv~~~~~~~~~kAG~Y 159 (199) T PRK02478 80 SLGDEVFHKPHDMEAARRHLQKLSGKTHQLNSAVVLVRDGKVLWRHVSIAHMTMRPLDAGFIGRHLARVGDKALSSVGAY 159 (199) T ss_pred EECCEECCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCEEEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEE T ss_conf 98999826964299999999997698399998999998998999999888998515999999999987499746541599 Q ss_pred CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 001223321000118975322276999999999789899 Q gi|254780813|r 161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKVID 199 (199) Q Consensus 161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gii~ 199 (199) +|||.|+.||++|+|||+||||||+.+|+++|++.|+|| T Consensus 160 ~Iqg~g~~~i~~I~Gd~~nVvGLPl~~l~~~L~e~~~~~ 198 (199) T PRK02478 160 QLEGEGIQLFEKIEGDYFTIVGLPLLPLLAKLRELKAID 198 (199) T ss_pred EECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCCCC T ss_conf 771656764750389862145656999999999748958 No 2 >COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning] Probab=100.00 E-value=0 Score=411.71 Aligned_cols=189 Identities=35% Similarity=0.561 Sum_probs=181.5 Q ss_pred CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCEECHHHH Q ss_conf 987547426998999999978988599758988432422013445799899988876543332101377-5403413443 Q gi|254780813|r 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYP-ESFVIGCDQT 79 (199) Q Consensus 1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~-~~~VI~aDtv 79 (199) ||+++||||+||||++||+++|++|++++|+|||+..+.+ .|.+++.+||+.||++++..++ +.+||||||| T Consensus 1 ~~~~LiLAS~SPrR~elL~~~gi~f~~~~~~iDE~~~~~~-------~P~~~v~~LA~~KA~~va~~~~~~~~VigaDtv 73 (193) T COG0424 1 MMPRLILASSSPRRRELLEQLGIPFEVIPSDIDEPLLKAE-------EPREYVLRLAEEKARAVAARLPPDALVIGADTV 73 (193) T ss_pred CCCCEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCC-------CHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEE T ss_conf 9862899469989999999879981980689998766578-------979999999999999999847999879962749 Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCE Q ss_conf 10123446761001346999998519803788866530378610046874110012220578999996206886733210 Q gi|254780813|r 80 MSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGS 159 (199) Q Consensus 80 v~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~ 159 (199) |+++|+|+|||.|.++|++||+.+||++|+|+||+|++++++.+|.++++|+|+|+++++++|++|+++ ++|++|||| T Consensus 74 v~ldgrilgKP~~~~eA~~~L~~lSG~~h~v~T~v~li~~~~~~~~~~~~t~V~F~~ls~~~I~~Yv~s--gepl~kAGa 151 (193) T COG0424 74 VVLDGRILGKPKDEEEAREMLRKLSGRTHQVYTGVALIDPGKRVQSEVEVTKVRFRTLSDEEIEAYVAS--GEPLDKAGA 151 (193) T ss_pred EEECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCCE T ss_conf 998999826999999999999984698699999999997797389999978999755999999999974--996023524 Q ss_pred ECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 000122332100011897532227699999999978989 Q gi|254780813|r 160 YQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKVI 198 (199) Q Consensus 160 y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gii 198 (199) |+|||.|+.||++|+|||+||||||+.++.++|+++|+. T Consensus 152 y~iqG~G~~fie~IeGdy~~vvGLPL~~l~~~L~~~g~~ 190 (193) T COG0424 152 YGIQGLGGLFIEKIEGDYSNVVGLPLPELVQLLRELGFS 190 (193) T ss_pred EEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCC T ss_conf 774036022798755475430076689999999974997 No 3 >PRK00148 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=408.81 Aligned_cols=187 Identities=25% Similarity=0.361 Sum_probs=179.3 Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHC Q ss_conf 87547426998999999978988599758988432422013445799899988876543332101377540341344310 Q gi|254780813|r 2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMS 81 (199) Q Consensus 2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~ 81 (199) |++|||||+||||++||+++|++|+++||+|||++.+. ..|.+++.++|+.||++++.++|+.+||||||||+ T Consensus 1 M~klILAS~Sp~R~~lL~~~g~~f~v~~~~idE~~~~~-------~~p~~~v~~lA~~KA~~v~~~~~~~iVI~aDtvv~ 73 (195) T PRK00148 1 MTRLVLASASPARLKLLRLAGIPPLVVVSHVDEDAIAA-------SLPSELVQALALAKAEAVAEVAPDAVVLGCDSMLL 73 (195) T ss_pred CCCEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEE T ss_conf 99789857999999999977998499789989898877-------89999999999999999998789977996435999 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 1234467610013469999985198037888665303-786100468741100122205789999962068867332100 Q gi|254780813|r 82 LGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQ-NGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY 160 (199) Q Consensus 82 ~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~-~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y 160 (199) ++|+|+|||.|.++|++||+.|||++|+||||+|++. +++.+|.++++|+|+|+++++++|++||++ ++|++||||| T Consensus 74 ~~g~i~gKP~~~~eA~~~L~~lsgk~H~v~Tgv~v~~~~~~~~~~~~~~t~V~f~~ls~~~I~~Yv~~--~~~~~kAG~y 151 (195) T PRK00148 74 IDGRLLGKPHTPEEAIERWQQMRGRTGELYTGHALIDLDQNVTFVEYERTEVHFAELSDEEIEAYVAT--GEPLDCAGAF 151 (195) T ss_pred ECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCEEE T ss_conf 89998359999999999999866997499988999988998899999989999946999999999960--9986730387 Q ss_pred CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 0012233210001189753222769999999997898 Q gi|254780813|r 161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) +|||.|..||++|+|||+||||||+.+|.++|+++|+ T Consensus 152 ~ieg~g~~~i~~I~G~~~nV~GLPl~~l~~~L~~~G~ 188 (195) T PRK00148 152 TLEGLGGWFVDKIEGDPSNVIGLSLPLLRRLLKRFGY 188 (195) T ss_pred EECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCC T ss_conf 6535854336543888300308889999999998599 No 4 >PRK04222 consensus Probab=100.00 E-value=0 Score=406.49 Aligned_cols=187 Identities=32% Similarity=0.528 Sum_probs=178.3 Q ss_pred CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHH Q ss_conf 98754742699899999997898859975898843242201344579989998887654333210137754034134431 Q gi|254780813|r 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTM 80 (199) Q Consensus 1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv 80 (199) ||++|||||+||||++||+++|++|++++|++||++++. .+|.+++.++|..||++++.++|+.+|||||||| T Consensus 1 mm~kiILAS~SprR~~lL~~~gi~F~~~~~~iDE~~~~~-------~~p~~~~~~lA~~KA~~v~~~~~~~~VIgaDtvv 73 (191) T PRK04222 1 MMPRLILASTSAYRRELLGRLQLDFDTARPEVDEQALPG-------ETPSALASRLAGEKAAAVAVRFPEAWVIGSDQVA 73 (191) T ss_pred CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEE T ss_conf 998789847999999999978998099789999887899-------9999999999999989889768986697145699 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 01234467610013469999985198037888665303786100468741100122205789999962068867332100 Q gi|254780813|r 81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY 160 (199) Q Consensus 81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y 160 (199) +++|++||||.|.++|++||+.|||++|+|+||+|++.+++. ++++++|+|+|+++++++|++|+++ ++|++||||| T Consensus 74 ~~~g~ilgKP~~~~eA~~~L~~LsGk~h~v~T~v~v~~~~~~-~~~~~~t~v~fr~ls~~~I~~Yl~~--~~~~~kAG~Y 150 (191) T PRK04222 74 DLDGQALGKPGTLEQARAQLTAMSGRTVRFHTAVSLIGPERA-LHALDLTEVQLRALTPQEIERYLDA--EPALDCAGSF 150 (191) T ss_pred EECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCC-EEEEEEEEEEEECCCHHHHHHHHHC--CCCCCCCEEE T ss_conf 989999479999999999999858997999999999968986-8999999999944999999999814--9821430589 Q ss_pred CCCCCHHHHHHEECC-CCCCCCCCCHHHHHHHHHHCCC Q ss_conf 001223321000118-9753222769999999997898 Q gi|254780813|r 161 QIDKEGIQLFSSIKG-SYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 161 ~ie~~g~~~i~~I~G-d~~~V~GLPi~~l~~~L~~~gi 197 (199) +|||.|..||++|+| ||+||||||+.+|.++|+++|+ T Consensus 151 ~ieg~g~~l~~~I~g~d~~~VvGLPl~~l~~~L~~~G~ 188 (191) T PRK04222 151 KCEGLGISLFDAIRSNDPTALVGLPLIALARLLRQAGF 188 (191) T ss_pred EEECCCHHEEEEEECCCCCEEECCCHHHHHHHHHHCCC T ss_conf 88126012389875379985774889999999998599 No 5 >PRK02676 consensus Probab=100.00 E-value=0 Score=405.41 Aligned_cols=188 Identities=26% Similarity=0.418 Sum_probs=177.9 Q ss_pred CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCEECHHHH Q ss_conf 987547426998999999978988599758988432422013445799899988876543332101-3775403413443 Q gi|254780813|r 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSN-RYPESFVIGCDQT 79 (199) Q Consensus 1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~-~~~~~~VI~aDtv 79 (199) |+++|||||+||||++||+++|++|+++||++||++++. .+|.+++.++|+.||++++. .+++.+||||||| T Consensus 1 m~~~iILAS~SprR~~lL~~~g~~f~v~~~~idE~~~~~-------~~p~~~~~~lA~~KA~~va~~~~~~~~VI~aDTv 73 (196) T PRK02676 1 MTPPFILASASPARRRLLQTVGIDPIVQPSHFDESQIQA-------TDPVALVQTLAQAKAETVAASQFEPALVLGCDSV 73 (196) T ss_pred CCCCEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEE T ss_conf 999999947999999999977998399789999888776-------8999999999999999998744899799990879 Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC Q ss_conf 101234467610013469999985198037888665303-7861004687411001222057899999620688673321 Q gi|254780813|r 80 MSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQ-NGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVG 158 (199) Q Consensus 80 v~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~-~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG 158 (199) |+++|+|+|||.|+++|++||+.|||++|.|+||+|++. .++..+.++++|+|+|+++++++|++||++ ++|++||| T Consensus 74 v~~~g~ilgKP~~~~eA~~~L~~lsGk~h~v~Tgv~li~~~~~~~~~~~~~t~V~f~~ls~~~I~~Yv~~--~~~~~kAG 151 (196) T PRK02676 74 LAIGGEIYGKPASPAEAIARWQQMRGQVGELYTGHALIDLAQNRTLVRCGVTRVHFANVSDEEIRAYVAT--GEPLKCAG 151 (196) T ss_pred EEECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCE T ss_conf 9989999789899999999998746996379888999988999799999989999888999999999954--99647416 Q ss_pred EECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 000012233210001189753222769999999997898 Q gi|254780813|r 159 SYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 159 ~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) ||+|||.|..||++|+|||+||||||+.+|.++|+++|+ T Consensus 152 ~y~Iqg~g~~~i~~I~G~~~nVvGLPl~~l~~~L~~~G~ 190 (196) T PRK02676 152 CFALEGKGGLFIEKIEGCHSNVIGLSLPLLRQMLQELGY 190 (196) T ss_pred EEEECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCC T ss_conf 875523866464102998642147889999999998699 No 6 >PRK03411 consensus Probab=100.00 E-value=0 Score=405.58 Aligned_cols=187 Identities=32% Similarity=0.500 Sum_probs=177.7 Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHC Q ss_conf 87547426998999999978988599758988432422013445799899988876543332101377540341344310 Q gi|254780813|r 2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMS 81 (199) Q Consensus 2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~ 81 (199) |++|||||+||||++||+++|++|++++|++||++.+. .+|.+++.+||+.||++++.++|+.+||||||||+ T Consensus 1 M~~lILAS~SprR~~lL~~~gi~f~~~~~~iDE~~~~~-------~~p~~~v~~lA~~KA~~v~~~~~~~~VIgaDtvv~ 73 (194) T PRK03411 1 MPQLILASTSPWRRALLEKLQIPFECAAPEVDETPRSG-------ESPRQLVLRLAQAKAQSLASRYPQHLIIGSDQVCV 73 (194) T ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEE T ss_conf 99889878999999999878999689799999998999-------89999999999999999987589976654676999 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCC-CCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 12344676100134699999851980378886653037-86100468741100122205789999962068867332100 Q gi|254780813|r 82 LGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQN-GKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY 160 (199) Q Consensus 82 ~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~-~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y 160 (199) ++|+|+|||.|+++|++||+.|||++|.|+||+|++.. +..+|..+++|+|+|+++++++|++||++ ++|++||||| T Consensus 74 ~~g~il~KP~~~~eA~~~L~~lsGk~h~v~T~v~l~~~~~~~~~~~~~~t~V~fr~ls~~eI~~Yv~~--~e~~~kAG~Y 151 (194) T PRK03411 74 LDGEITGKPLTEENARKQLRKASGNIVTFYTGLALFNSANGHLQTEVEPFDVHFRHLSEAEIDGYVRK--EHPLHCAGSF 151 (194) T ss_pred ECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCEEE T ss_conf 89999768200999999999876981999989999988997899999996715037999999999955--9830472788 Q ss_pred CCCCCHHHHHHEECC-CCCCCCCCCHHHHHHHHHHCCC Q ss_conf 001223321000118-9753222769999999997898 Q gi|254780813|r 161 QIDKEGIQLFSSIKG-SYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 161 ~ie~~g~~~i~~I~G-d~~~V~GLPi~~l~~~L~~~gi 197 (199) +|||.|..||++|+| ||+||||||+.+|+++|+++|+ T Consensus 152 ~ieg~g~~li~~I~G~~~~~VvGLPl~~l~~~L~~~G~ 189 (194) T PRK03411 152 KSEGLGITLFERLEGRDPNTLIGLPLIALCQMLRREGV 189 (194) T ss_pred EEECCHHHCEEEEEECCCCEEECCCHHHHHHHHHHCCC T ss_conf 56127454274679358996241899999999998699 No 7 >PRK00884 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=404.69 Aligned_cols=187 Identities=31% Similarity=0.491 Sum_probs=177.1 Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHC Q ss_conf 87547426998999999978988599758988432422013445799899988876543332101377540341344310 Q gi|254780813|r 2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMS 81 (199) Q Consensus 2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~ 81 (199) |++|||||+||||++||+++|++|++++|++||++.+. .+|.+++.++|+.||.+++.++|+.+||||||||+ T Consensus 1 M~~iILAS~SprR~~lL~~~gi~f~v~~~~idE~~~~~-------~~p~~~~~~lA~~KA~~v~~~~~~~~VigaDTvv~ 73 (194) T PRK00884 1 MPQLILASTSPYRRALLEKLQLPFECAAPEVDETPRPG-------ESPRQLVLRLAQEKAQSLASRYPDHLIIGSDQVCV 73 (194) T ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEE T ss_conf 99889978999999999878999589799999888889-------99999999999999998786589958984478999 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCC-CCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 123446761001346999998519803788866530378-6100468741100122205789999962068867332100 Q gi|254780813|r 82 LGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG-KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY 160 (199) Q Consensus 82 ~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~-~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y 160 (199) +||+|||||.|+++|++||+.|||++|+|+||+|++.++ +.+|.++++|+|+|+++++++|++|+++ ++|++||||| T Consensus 74 ~~g~i~~KP~~~~eA~~~L~~lsGk~h~v~Tgv~v~~~~~~~~~~~~~~t~V~f~~ls~~eI~~Yl~~--~e~~~kAG~Y 151 (194) T PRK00884 74 LDGEITGKPLTEENARLQLRKASGNIVTFYTGLALFNSATGHLQTEVEPFDVHFRHLSEAEIDRYVRK--EHPLHCAGSF 151 (194) T ss_pred ECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCEEEE T ss_conf 89998469799999999998757987999989999989997899999999999898999999999842--9985623687 Q ss_pred CCCCCHHHHHHEECCC-CCCCCCCCHHHHHHHHHHCCC Q ss_conf 0012233210001189-753222769999999997898 Q gi|254780813|r 161 QIDKEGIQLFSSIKGS-YFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 161 ~ie~~g~~~i~~I~Gd-~~~V~GLPi~~l~~~L~~~gi 197 (199) +|||.|..||++|+|| |+||||||+.+|+++|+++|+ T Consensus 152 ~ieg~g~~li~~I~G~~~~~VvGLPl~~l~~~L~~~G~ 189 (194) T PRK00884 152 KSEGLGITLFERLEGRDPNTLVGLPLIALCQMLRREGF 189 (194) T ss_pred EEECCHHHEEEEEEECCCCEEECCCHHHHHHHHHHCCC T ss_conf 54058101099889058996673889999999998699 No 8 >PRK00032 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=402.90 Aligned_cols=188 Identities=29% Similarity=0.416 Sum_probs=177.5 Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCCCEECHHHHH Q ss_conf 87547426998999999978988599758988432422013445799899988876543332-10137754034134431 Q gi|254780813|r 2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE-VSNRYPESFVIGCDQTM 80 (199) Q Consensus 2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~-v~~~~~~~~VI~aDtvv 80 (199) |++|||||+||||++||+++|++|+++||++||++.+. .+|.+++.++|+.||++ ++...++.+|||||||| T Consensus 1 M~~lILAS~S~~R~~lL~~~gi~f~~~~~~idE~~~~~-------~~p~~~~~~lA~~KA~~~~~~~~~~~~VigaDtvv 73 (189) T PRK00032 1 MTSLYLASGSPRRRELLAQLGVPFEVLVTGIEEQRQPQ-------ESAQQYVERLARDKAQAGVALVPQDLPVLGADTIV 73 (189) T ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEE T ss_conf 99889847999999999878998099739999888899-------99999999999998999997449997799547699 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 01234467610013469999985198037888665303786100468741100122205789999962068867332100 Q gi|254780813|r 81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY 160 (199) Q Consensus 81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y 160 (199) +++|+|+|||.|.++|++||+.|||++|+||||+|++.++ .++.++++|+|+|+++++++|++||++ ++|++||||| T Consensus 74 ~~~g~i~~KP~~~~eA~~~L~~lsGk~h~v~T~v~v~~~~-~~~~~~~~t~v~fr~ls~~~I~~Yv~~--~~~~~kAG~y 150 (189) T PRK00032 74 VLDGEVLEKPRDAADAAAMLAALSGRTHQVMTAVALADSQ-RILSCVVVTDVTFRTLSDEEIARYWAS--GEPLDKAGAY 150 (189) T ss_pred EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC-EEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCEEEEE T ss_conf 9999997799999999999998589938999899999899-899999989999748999999999802--9987643475 Q ss_pred CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 001223321000118975322276999999999789899 Q gi|254780813|r 161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKVID 199 (199) Q Consensus 161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gii~ 199 (199) +|||.|..||++|+|||+||||||+.+|.++|+++||+- T Consensus 151 ~ieg~g~~~i~~I~G~~~~V~GLPl~~l~~~L~~~Gvl~ 189 (189) T PRK00032 151 GIQGLGGCFVRKINGSYHAVVGLPLVETAELLSHFGALR 189 (189) T ss_pred EECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCCCC T ss_conf 315584333766798721001775999999999859989 No 9 >PRK00234 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=402.45 Aligned_cols=187 Identities=30% Similarity=0.452 Sum_probs=176.4 Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHC Q ss_conf 87547426998999999978988599758988432422013445799899988876543332101377540341344310 Q gi|254780813|r 2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMS 81 (199) Q Consensus 2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~ 81 (199) |++|||||+||||++||+++|++|++++|++||++.+. .+|.+++.++|..||++++..+|+.+|||||||++ T Consensus 1 M~~iILAS~SprR~~lL~~~gi~f~v~~~~idE~~~~~-------~~p~~~~~~lA~~KA~~v~~~~~~~~VIgaDtvv~ 73 (192) T PRK00234 1 MPPLLLASSSPYRRELLARLRLPFTCASPDIDESHRPD-------ESAEELVRRLARQKAEALAGSHPQHLIIGSDQVAV 73 (192) T ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEE T ss_conf 99889868999999999977999499789998888999-------89999999999999986476489867873586999 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCC-CCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 123446761001346999998519803788866530378-6100468741100122205789999962068867332100 Q gi|254780813|r 82 LGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG-KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY 160 (199) Q Consensus 82 ~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~-~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y 160 (199) ++|+|+|||.|+++|++||+.|||++|.|+||+|+++.. ..++..+.+|+|+|+++++++|++||++ ++|++||||| T Consensus 74 ~~g~il~KP~~~~~A~~~L~~lsGk~h~v~Tgv~v~~~~~~~~~~~~~~t~v~f~~ls~~~I~~Yv~~--~e~~dkAG~Y 151 (192) T PRK00234 74 LGEQILGKPHTFERACEQLLAASGQSVTFLTGLALLNSATGRCQVDCVPFTVHMRELDRARIERYVEA--EQPLDCAGSF 151 (192) T ss_pred ECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCEEE T ss_conf 89999779999999999999828995999987999989996899999999999788999999999965--9961464772 Q ss_pred CCCCCHHHHHHEECC-CCCCCCCCCHHHHHHHHHHCCC Q ss_conf 001223321000118-9753222769999999997898 Q gi|254780813|r 161 QIDKEGIQLFSSIKG-SYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 161 ~ie~~g~~~i~~I~G-d~~~V~GLPi~~l~~~L~~~gi 197 (199) +|||.|..||++|+| ||+||||||+.+|+++|+++|+ T Consensus 152 ~ieg~g~~li~~I~GsD~~nVvGLPl~~l~~~L~~~Gi 189 (192) T PRK00234 152 KAEGLGVSLFRSTEGEDATSLIGLPLIRLVDMLLKEGV 189 (192) T ss_pred HHCCCHHHCEEEEECCCCCCEEECCHHHHHHHHHHCCC T ss_conf 11248422487508489983433879999999998599 No 10 >PRK04425 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=400.61 Aligned_cols=189 Identities=30% Similarity=0.470 Sum_probs=177.6 Q ss_pred CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHH Q ss_conf 98754742699899999997898859975898843242201344579989998887654333210137754034134431 Q gi|254780813|r 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTM 80 (199) Q Consensus 1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv 80 (199) |..+|||||+||||++||+++|++|+++||+|||++.+. ..|.+++.++|+.||++++.++|+.+|||||||| T Consensus 3 ~~~~lILAS~SprR~~LL~~~gi~f~v~~~~idE~~~~~-------e~~~~~a~~lA~~KA~~v~~~~~~~iVIgaDtvv 75 (196) T PRK04425 3 LELPLVLGTSSVFRREQMERLGIAFQAASPDFDETPMLG-------ESAPQTALRLAEGKARSLTGRFPEALIVGADQVA 75 (196) T ss_pred CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEE T ss_conf 988799858999999999878999599769999899999-------9989999999999999999758997798148499 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCC-CCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCE Q ss_conf 012344676100134699999851980378886653037-8610046874110012220578999996206886733210 Q gi|254780813|r 81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQN-GKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGS 159 (199) Q Consensus 81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~-~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~ 159 (199) +++|+|+|||.|+++|++||+.|||++|+||||+|+++. ++.+|.++++|+|+|+++++++|++|+++ .+++++|||+ T Consensus 76 ~~~g~ilgKP~~~~eA~~~L~~LsGk~H~v~T~v~v~~~~~~~~~~~~~~t~v~f~~ls~~eI~~Yl~~-~~~~~~~aG~ 154 (196) T PRK04425 76 WCDGRQWGKPMNLANAQKMLMHLSGREIEFYSAVVLLNTVTGRMQRHIDKTVVVMRQLDELHILRYLER-EPDAVYCSCA 154 (196) T ss_pred EECCEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHC-CCCHHCCCEE T ss_conf 999998589999999999999707992999999999988998599999999999937999999999967-9813224889 Q ss_pred ECCCCCHHHHHHEECCCC-CCCCCCCHHHHHHHHHHCCC Q ss_conf 000122332100011897-53222769999999997898 Q gi|254780813|r 160 YQIDKEGIQLFSSIKGSY-FSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 160 y~ie~~g~~~i~~I~Gd~-~~V~GLPi~~l~~~L~~~gi 197 (199) |+|||.|+.||++|+||| ++|||||+.+|.++|+++|+ T Consensus 155 y~ieg~g~~li~~I~G~~~n~VvGLPl~~l~~~L~~~G~ 193 (196) T PRK04425 155 AKSEGLGALLIERIESTDPNALIGLPVFRLVDFLKNEGV 193 (196) T ss_pred EEHHHHHHHHEEEEECCCCCEEEECCHHHHHHHHHHCCC T ss_conf 970221875164527369981551849999999998689 No 11 >PRK03442 consensus Probab=100.00 E-value=0 Score=399.79 Aligned_cols=192 Identities=21% Similarity=0.368 Sum_probs=176.8 Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-----CCCEECH Q ss_conf 87547426998999999978988599758988432422013445799899988876543332101377-----5403413 Q gi|254780813|r 2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYP-----ESFVIGC 76 (199) Q Consensus 2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~-----~~~VI~a 76 (199) |.+|||||+||||++||+++|++|++++|+|||++++... ....+|.+++.+||..||.+++.+++ +.+|||| T Consensus 1 M~klILAS~SprR~~lL~~~g~~f~v~~~~iDE~~~~~~~--~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~d~lVi~a 78 (213) T PRK03442 1 MTRLVLGSASPGRLKVLRQAGIDPLVVVSGVDEDAVIAAL--GPDAPPSDVVCALAAAKAAQVATALPREVAADCVVVGC 78 (213) T ss_pred CCCEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC T ss_conf 9848986899999999997799819974899987301124--78899999999999999999997573434789799968 Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC--CCCCCEEE--EEEEEEECCCCCHHHHHHHHHHCCCC Q ss_conf 443101234467610013469999985198037888665303--78610046--87411001222057899999620688 Q gi|254780813|r 77 DQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQ--NGKVLRHH--ISVAQLTMYKLSEEFIKFYLNKIGKK 152 (199) Q Consensus 77 Dtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~--~~~~~~~~--~~~t~v~f~~l~~~~I~~Yi~~~~~~ 152 (199) ||+|+++|+|||||.|+++|++||+.|||++|+|+||+|++. ++...|.. +++|+|+|+++++++|++||++ ++ T Consensus 79 Dtiv~~~g~il~KP~~~~eA~~~L~~lsGk~h~v~Tgv~v~~~~~~~~~~~~~~~~~t~V~f~~ls~~eI~~Yv~~--~e 156 (213) T PRK03442 79 DSMLYIDGRLCGKPGSPDAARAQWRSMAGRSGQLYTGHCVLRLRDGVIVHREVETAATTVHFGTPSEADLEAYLAS--GE 156 (213) T ss_pred CEEEEECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHC--CC T ss_conf 9199989998379899899999999966996089999999991799188999999999999889999999999855--99 Q ss_pred CCCCCCEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 673321000012233210001189753222769999999997898 Q gi|254780813|r 153 ALLSVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 153 ~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) |++|||||+|||.|+.||++|+|||+||||||+.++.++|+++|+ T Consensus 157 p~~kAG~Y~Iqg~g~~li~~I~Gd~~nVvGLPl~~l~~lL~~~G~ 201 (213) T PRK03442 157 PLHVAGGFTLDGLGGWFIDGVDGDPSNVIGLSLPLLRRLLQRVGL 201 (213) T ss_pred CCCCCEEEEECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCC T ss_conf 604445743410757506122887520245889999999998599 No 12 >PRK00238 consensus Probab=100.00 E-value=0 Score=399.77 Aligned_cols=187 Identities=28% Similarity=0.403 Sum_probs=175.4 Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCCCEECHHH Q ss_conf 87547426998999999978988599758988432422013445799899988876543332---101377540341344 Q gi|254780813|r 2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE---VSNRYPESFVIGCDQ 78 (199) Q Consensus 2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~---v~~~~~~~~VI~aDt 78 (199) |++|||||+||||++||+++|++|+++||++||++++. .+|.+++.++|..||.+ +...+++.+|||||| T Consensus 1 M~~lILAS~Sp~R~~lL~~~gi~f~~~~~~iDE~~~~~-------~~p~~~~~~lA~~KA~a~~~~~~~~~~~lVIgaDt 73 (198) T PRK00238 1 MPSLYLASGSPRRRELLTQIGVPFSVLSAPIDETPLPD-------ESPAAYVERLARGKAAAGLAMLGAEGPACVLGADT 73 (198) T ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 99889838999999999878998299838999998888-------89999999999999999999865389968994481 Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC Q ss_conf 31012344676100134699999851980378886653037861004687411001222057899999620688673321 Q gi|254780813|r 79 TMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVG 158 (199) Q Consensus 79 vv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG 158 (199) ||+++|+++|||.|+++|++||+.|||++|+||||+|+..++ .++.++++|+|+|+++++++|++|+++ ++|++||| T Consensus 74 vv~~~g~i~~KP~~~~eA~~~L~~lsGk~H~v~T~v~l~~~~-~~~~~~~~t~V~f~~ls~~eI~~Yi~~--~~p~~kAG 150 (198) T PRK00238 74 AVVLDGRILGKPVDRADALAMLAALSGREHQVLTAVALADGQ-RVESRVVTSRVRFRPISPDEAQRYWAS--GEPADKAG 150 (198) T ss_pred EEEECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCC-EEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCEEE T ss_conf 999899996899999999999997279955999999998299-799999989999646999999999954--99656207 Q ss_pred EECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 0000122332100011897532227699999999978989 Q gi|254780813|r 159 SYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKVI 198 (199) Q Consensus 159 ~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gii 198 (199) ||+|||.|..||++|+|||+||||||+.+++++|+++||- T Consensus 151 ~y~ie~~g~~li~~I~Gd~~~I~GLPl~~l~~~L~~~Gi~ 190 (198) T PRK00238 151 GYAIQGLGAVFVSGLEGSYSAVVGLPLCETAELLGHFGIP 190 (198) T ss_pred EEEECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCCC T ss_conf 8865328565263107784115447899999999976998 No 13 >PRK03415 consensus Probab=100.00 E-value=0 Score=399.28 Aligned_cols=187 Identities=26% Similarity=0.412 Sum_probs=174.4 Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCEECHHHHH Q ss_conf 8754742699899999997898859975898843242201344579989998887654333210137-754034134431 Q gi|254780813|r 2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRY-PESFVIGCDQTM 80 (199) Q Consensus 2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~-~~~~VI~aDtvv 80 (199) |++|||||+||||++||+++|++|+++||++||++.+. .+|.+++.++|+.||+++.... ++.+|||||||| T Consensus 1 M~~lILAS~S~~R~~lL~~~gi~f~vi~~~iDE~~~~~-------~~p~~~v~~lA~~KA~~v~~~~~~~~~VIgaDTvv 73 (197) T PRK03415 1 MTSLYLASGSPRRQELLAQLGVTFERLVTGIEEQRQPQ-------ESAQQYVVRLAREKAQAGVAQAPQDLPVLGADTIV 73 (197) T ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEE T ss_conf 99889847999999999978999689768999998889-------99999999999999999985258998899868199 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 01234467610013469999985198037888665303786100468741100122205789999962068867332100 Q gi|254780813|r 81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY 160 (199) Q Consensus 81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y 160 (199) +++|+|+|||.|+++|++||+.|||++|.|+||+|+..+++ ++.++++|+|+|+++++++|++||++ ++|++||||| T Consensus 74 ~~~g~il~KP~~~~eA~~~L~~lsG~~H~v~T~v~l~~~~~-~~~~~~~t~V~fr~ls~~eI~~Yv~~--~e~~~kAG~y 150 (197) T PRK03415 74 VLNGEVLEKPRDAEHAAQMLRALSGQTHQVMTAVALADSQH-ILDCLVVTDVTFRTLSDQDIAGYVAS--GEPMDKAGAY 150 (197) T ss_pred EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCC-EEEEEEEEEEEEECCCHHHHHHHHHC--CCCCCEEEEE T ss_conf 98999968999999999999997699529999999982994-89999989999924999999999824--9975640372 Q ss_pred CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 00122332100011897532227699999999978989 Q gi|254780813|r 161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKVI 198 (199) Q Consensus 161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gii 198 (199) +|||.|..||++|+|||+||||||+.+++++|+++|++ T Consensus 151 ~Ieg~g~~li~~I~G~~~nVvGLPl~~l~~~L~~~~~l 188 (197) T PRK03415 151 GIQGKGGCFVRKINGSYHAVVGLPLVETYELLSNFNAL 188 (197) T ss_pred ECCCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHCCCH T ss_conf 01449676031016896323187799999999986774 No 14 >PRK01839 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=398.02 Aligned_cols=194 Identities=25% Similarity=0.425 Sum_probs=178.2 Q ss_pred CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-----HCCCCCCCEEC Q ss_conf 9875474269989999999789885997589884324220134457998999888765433321-----01377540341 Q gi|254780813|r 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEV-----SNRYPESFVIG 75 (199) Q Consensus 1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v-----~~~~~~~~VI~ 75 (199) |.++|||||+||||++||+++|++|++++|++||+....+.. ..+.+|.+++.++|..||.++ +..+|+.+||| T Consensus 8 ~~p~IILAS~SprR~~lL~~~gi~f~~~~~~~dE~~~~~e~~-~~~~~p~~~v~~la~~Ka~~~~~~~~~~~~p~~~VIg 86 (209) T PRK01839 8 LFPFLYLASQSPRRQELLQQLGVRYELLLPRPDEDAEALEAE-LPGEAPDAYVQRVCVAKAEAARARLVARGLPAAPVLV 86 (209) T ss_pred CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 788889857999999999878999589788998763201133-7899989999999999999999987640499997999 Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCC-CCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCC Q ss_conf 34431012344676100134699999851980378886653037-86100468741100122205789999962068867 Q gi|254780813|r 76 CDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQN-GKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKAL 154 (199) Q Consensus 76 aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~-~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~ 154 (199) |||||+|+|+|+|||.|+++|++||+.|||++|.||||+|++.. ++.+|+++++|+|+|+++++++|++||++ ++|+ T Consensus 87 aDtiv~~~g~ilgKP~~~eeA~~~L~~lsGk~H~v~T~v~v~~~~~~~~~~~~~~t~V~f~~ls~~~I~~Yi~~--~e~~ 164 (209) T PRK01839 87 ADTTVTIDGAILGKPADAADALAMLTRLAGRTHRVLTAVAVIDATGELMPPALSRSRVRFAAATRDAIARYVAS--GEPF 164 (209) T ss_pred ECCEEEECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCC T ss_conf 89889989999689999999999999866996699999999978996899999999999899998999999835--9984 Q ss_pred CCCCEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 3321000012233210001189753222769999999997898 Q gi|254780813|r 155 LSVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 155 ~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) +|||||+|||.|..||++|+|||+||||||+.+|.++|+++|| T Consensus 165 ~kAG~y~Ieg~g~~li~~I~Gd~~nVvGLPl~~l~~~L~~~gv 207 (209) T PRK01839 165 GKAGAYAIQGRAAEFVERIDGSYSGIMGLPLFETAALLRAARV 207 (209) T ss_pred CCCEEHHHCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC T ss_conf 7231723443877610111898754128769999999998599 No 15 >PRK00648 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=393.49 Aligned_cols=188 Identities=32% Similarity=0.487 Sum_probs=177.1 Q ss_pred CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCEECHHHH Q ss_conf 987547426998999999978988599758988432422013445799899988876543332101-3775403413443 Q gi|254780813|r 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSN-RYPESFVIGCDQT 79 (199) Q Consensus 1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~-~~~~~~VI~aDtv 79 (199) |..+|||||+||||++||+++|++|++++|++||+.++.. .+|.+++.++|..||.++.. .+|+.+||||||| T Consensus 1 m~~~iILAS~S~~R~~lL~~~gi~f~v~~~~~dEe~~~~~------~~p~~~~~~lA~~Ka~~v~~~~~~~~~vI~aDtv 74 (191) T PRK00648 1 MKYKIVLASSSPRRKEILEGFRIPFEVIPSPFVEESYPYS------LDPEEYTLELARLKAEAVRSDHFPDELIITADTI 74 (191) T ss_pred CCCCEEEECCCHHHHHHHHHCCCCCEEECCCCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEE T ss_conf 9974999689999999999779995997899987767778------9999999999999999999721899889996849 Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCE Q ss_conf 10123446761001346999998519803788866530378610046874110012220578999996206886733210 Q gi|254780813|r 80 MSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGS 159 (199) Q Consensus 80 v~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~ 159 (199) |+++|+|+|||.|.++|++||+.|||++|.|+||+|++.+++.. .++++|+|+|+++++++|++||++ ++|++|||| T Consensus 75 v~~~g~i~~KP~~~~eA~~~L~~lsGk~h~v~T~v~v~~~~~~~-~~~~~t~v~f~~ls~~~I~~Yv~~--~~~~~kAG~ 151 (191) T PRK00648 75 VWYDGKVLGKPKSEEEAIEMLKTLSGKTHEVITGVCIIHNGKLL-SGSETTQVTFRELSDEEIEYYIDT--YKPLDKAGA 151 (191) T ss_pred EEECCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCEEE-EEEEEEEEEECCCCHHHHHHHHHH--CCCCCEEEE T ss_conf 99899996797659999999999789960999999999899999-999999999547999999999952--998763457 Q ss_pred ECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 00012233210001189753222769999999997898 Q gi|254780813|r 160 YQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 160 y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) |+|||.|+.||++|+|||+||||||+.+|.++|+++|| T Consensus 152 y~ieg~g~~~i~~I~G~~~~V~GLPl~~l~~~L~~~gi 189 (191) T PRK00648 152 YGIQEWGGLIIKKIEGSYYNVQGLPIQTLYKLLKELNI 189 (191) T ss_pred HHHCCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHCCC T ss_conf 12542877514641899654048889999999998689 No 16 >PRK02141 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=393.15 Aligned_cols=186 Identities=30% Similarity=0.395 Sum_probs=171.8 Q ss_pred CCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCCEECHHHH Q ss_conf 75474269989999999789885997589884324220134457998999888765433321013---775403413443 Q gi|254780813|r 3 KNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNR---YPESFVIGCDQT 79 (199) Q Consensus 3 ~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~---~~~~~VI~aDtv 79 (199) ++|||||+||||++||+++|++|++++|+|||++.+. .+|.+++.++|+.||++++.. .|+.+||||||| T Consensus 9 pklILAS~SprR~eLL~~~Gi~f~v~~~~iDE~~~~~-------~~p~~~~~~lA~~KA~~v~~~~~~~~~~lVIgaDtv 81 (206) T PRK02141 9 PRLILASSSRYRRELLERLRLPFDVVSPDIDETPLAG-------ETPAATALRLAAAKARAVAATIDAPPGALVIGSDQV 81 (206) T ss_pred CCEEEECCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECEE T ss_conf 9799937999999999878999599858999888999-------999999999999999999876105999799994979 Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCC-CCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC Q ss_conf 10123446761001346999998519803788866530378-61004687411001222057899999620688673321 Q gi|254780813|r 80 MSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG-KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVG 158 (199) Q Consensus 80 v~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~-~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG 158 (199) |+++|+|||||.|+++|++||+.|||++|.||||+|++.+. ...+....+|+|+|+++++++|++||++ ++|++||| T Consensus 82 v~~~g~ilgKP~~~~~A~~~L~~LsGk~H~v~T~v~l~~~~~~~~~~~~~~t~V~f~~ls~~eI~~Yv~~--~ep~~kAG 159 (206) T PRK02141 82 ATFDGLQIGKPGTHERALAQLRAMRGRTVEFHSALCLYDSRTGETQSEDIVTRVRFRTLTDAELDAYLRA--ETPYDVAG 159 (206) T ss_pred EEECCEECCCCCCHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCE T ss_conf 9859997369999999999998625991999999999978987799999989999889999999999974--98110617 Q ss_pred EECCCCCHHHHHHEECCC-CCCCCCCCHHHHHHHHHHCCC Q ss_conf 000012233210001189-753222769999999997898 Q gi|254780813|r 159 SYQIDKEGIQLFSSIKGS-YFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 159 ~y~ie~~g~~~i~~I~Gd-~~~V~GLPi~~l~~~L~~~gi 197 (199) ||+|||.|..||++|+|| |+||||||+.+|+++|+++|+ T Consensus 160 ~Y~ieg~G~~li~~I~G~~~tnVvGLPl~~l~~~L~~~G~ 199 (206) T PRK02141 160 SAKSEGLGIALLDAIDSDDPTALVGLPLIALTRMLRAAGY 199 (206) T ss_pred EEEEECCHHHHEEEEECCCCCEEECCCHHHHHHHHHHCCC T ss_conf 9988005161276707799985741899999999997698 No 17 >PRK01441 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=391.01 Aligned_cols=186 Identities=28% Similarity=0.387 Sum_probs=174.1 Q ss_pred CCEEECCCCHHHHHHHHHCCCCC-EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH------CCCCCCCEEC Q ss_conf 75474269989999999789885-9975898843242201344579989998887654333210------1377540341 Q gi|254780813|r 3 KNIILASSSLSRRKLLQNSGIQF-SVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVS------NRYPESFVIG 75 (199) Q Consensus 3 ~~iILAS~S~~R~~lL~~~gi~f-~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~------~~~~~~~VI~ 75 (199) ++|||||+||||++||+++|++| .+.|+++||++.+.+ .|.+++..+|..||+++. ..+|+.+||| T Consensus 5 ~riILAS~SprR~~LL~~~gi~~~~v~p~~iDE~~~~~~-------~p~~~~~~la~~Ka~a~~~~~~~~~~~~~~~VIg 77 (207) T PRK01441 5 PKLVLASGSPRRLELLNQAGIEPDRLRPADIDETPKRGE-------HPRSLARRLSRAKAEAALESLQGDDGLRGAFILA 77 (207) T ss_pred CCEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCC-------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE T ss_conf 959996899999999986799816997699788888664-------9899999999999999998703233479988999 Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCC Q ss_conf 34431012344676100134699999851980378886653037861004687411001222057899999620688673 Q gi|254780813|r 76 CDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALL 155 (199) Q Consensus 76 aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~ 155 (199) |||||+++|+|+|||.|+++|++||+.|||++|+||||+|++.+++.+|+++++|+|+|++++|++|++||++ ++|++ T Consensus 78 aDTvv~~~g~ilgKP~~~~~A~~~L~~lsGk~H~v~Tgv~l~~~~~~~~~~~~~t~V~fr~ls~~~I~~Yv~~--~e~~~ 155 (207) T PRK01441 78 ADTVVAVGRRILPKAELVDEASQCLRLLSGRNHRVYTGVCLVTPKGNLRQRLVETRVRFKRLSREDIEAYLAS--GEWRG 155 (207) T ss_pred ECEEEEECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCC T ss_conf 6929997999947999999999999997599179998999998997489999989999788999999999965--99848 Q ss_pred CCCEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 321000012233210001189753222769999999997898 Q gi|254780813|r 156 SVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 156 ~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) |||||+|||.|+.||++|+|||+||||||+.++.++|+++|+ T Consensus 156 kAG~Y~iqg~g~~li~~I~G~~~nV~GLPl~~l~~~L~~~G~ 197 (207) T PRK01441 156 KAGGYAIQGIAGSFVVKLVGSYTNVVGLPLYETVSLLAGEGF 197 (207) T ss_pred CCEEEEECCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHCCC T ss_conf 878898633867621010789974057879999999998699 No 18 >PRK03098 consensus Probab=100.00 E-value=0 Score=392.43 Aligned_cols=182 Identities=32% Similarity=0.523 Sum_probs=173.9 Q ss_pred EECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCC Q ss_conf 74269989999999789885997589884324220134457998999888765433321013775403413443101234 Q gi|254780813|r 6 ILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSS 85 (199) Q Consensus 6 ILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~ 85 (199) ||||+||||++||+++|++|+++||+|||+..+ ..+|.+++.++|+.||++++.++|+.+||||||||+|+|+ T Consensus 1 ILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~-------~~~p~~~~~~lA~~KA~~v~~~~~~~~vI~aDtvv~~~g~ 73 (185) T PRK03098 1 ILASGSPRRKELLELAGVPFEIIVSEVEETIGA-------YSSPSEIVQSLALQKASAVAENNPDAIVLGADTIVTYDGR 73 (185) T ss_pred CCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEEECCE T ss_conf 979699999999986899959977999999999-------9699999999999999999987899879987718971997 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCCCC Q ss_conf 46761001346999998519803788866530378610046874110012220578999996206886733210000122 Q gi|254780813|r 86 IYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKE 165 (199) Q Consensus 86 i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y~ie~~ 165 (199) ++|||.|+++|++||+.|||++|+||||+|++.+++. +.++++|+|+|+++++++|++||++ ++|++|||||+|||. T Consensus 74 ilgKP~~~~eA~~~L~~lsGk~h~v~T~v~v~~~~~~-~~~~~~t~v~f~~ls~~eI~~Yl~~--~~~~~kAG~y~ie~~ 150 (185) T PRK03098 74 ILGKPSDEEEAKEMLQLLSGKTHEVYTGVAIIAKDKT-VTFYERTEVTFWELTEEEIDAYIAT--KEPLDKAGSYGIQGK 150 (185) T ss_pred EECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCEE-EEEEEEEEEEEECCCHHHHHHHHHC--CCCCCCCEEHHHCCC T ss_conf 8469765999999999977991799989999989989-9985204899926999999999845--997661147112218 Q ss_pred HHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 33210001189753222769999999997898 Q gi|254780813|r 166 GIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 166 g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) |..||++|+|||+||||||+.+|+++|+++|+ T Consensus 151 g~~li~~I~Gd~~~V~GLPl~~l~~~L~~~G~ 182 (185) T PRK03098 151 GALFVKHIQGDYYSVVGLPISRTVRELKQFGI 182 (185) T ss_pred HHHHEEEEECCCCCCCCCCHHHHHHHHHHCCC T ss_conf 68510010898322436779999999998599 No 19 >PRK00078 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=391.34 Aligned_cols=187 Identities=28% Similarity=0.459 Sum_probs=174.6 Q ss_pred CCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCEECHHHHH Q ss_conf 7547426998999999978988599758988432422013445799899988876543332101377--54034134431 Q gi|254780813|r 3 KNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYP--ESFVIGCDQTM 80 (199) Q Consensus 3 ~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~--~~~VI~aDtvv 80 (199) .+|||||+||||++||+++|++|+++||+|||+.++.. .+|.+++.++|..||.+++.+++ +.+|||||||| T Consensus 1 mklILAS~S~~R~~lL~~~g~~f~v~~~~idE~~~~~~------~~~~~~v~~lA~~Ka~~v~~~~~~~~~~Vi~aDtvv 74 (192) T PRK00078 1 MKVILASASERRQELLKRIVEDFQVIVSDFDESSVPFK------GNIESYVMNLAEGKARSVSKKLDNESAIVIGCDTVV 74 (192) T ss_pred CEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECEEE T ss_conf 97999279999999997189997997199897988778------998999999999999999975279997999968199 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCE Q ss_conf 01234467610013469999985198037888665303-78610046874110012220578999996206886733210 Q gi|254780813|r 81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQ-NGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGS 159 (199) Q Consensus 81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~-~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~ 159 (199) +++|+|+|||.|+++|++||+.|||++|+||||+|++. ++..+|.++++|+|+|+++++++|++||++ ++|++|||| T Consensus 75 ~~~g~ilgKP~~~~eA~~~L~~lsgk~h~v~T~v~l~~~~~~~~~~~~~~t~V~f~~ls~~~I~~Yv~~--~~~~~kAG~ 152 (192) T PRK00078 75 AFNGKVLGKPKDEEDAFEMLKALSGNEHEVYSGIAILDTKSNKIITDFVCTEVKFSELTDRQIRKYINT--GEPMDKAGA 152 (192) T ss_pred EECCEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCEEEE T ss_conf 989999679999999985056508994799999999988999799999989999848999999999804--997471048 Q ss_pred ECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 00012233210001189753222769999999997898 Q gi|254780813|r 160 YQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 160 y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) |+|||.|..||++|+|||+||||||+.+|+++|+++|| T Consensus 153 y~ieg~g~~~i~~I~G~~~nV~GLPl~~l~~~L~~~G~ 190 (192) T PRK00078 153 YGIQGKGGVFVEEINGCYYNVVGLPLNKLYKMLEEMGV 190 (192) T ss_pred EECCCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCC T ss_conf 20233856553411998765027899999999998689 No 20 >PRK04694 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=390.39 Aligned_cols=184 Identities=27% Similarity=0.417 Sum_probs=175.0 Q ss_pred EEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH----HHCCCCCCCEECHHHHH Q ss_conf 47426998999999978988599758988432422013445799899988876543332----10137754034134431 Q gi|254780813|r 5 IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE----VSNRYPESFVIGCDQTM 80 (199) Q Consensus 5 iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~----v~~~~~~~~VI~aDtvv 80 (199) |||||+||||++||+++|++|++++|++||...+. ..|.+++.++|..||++ ++..+|+.+|||||||| T Consensus 2 iILAS~SprR~~lL~~~gi~f~v~~~didE~~~~~-------~~p~~~v~~lA~~KA~~~~~~~~~~~~~~~VIgaDtvv 74 (190) T PRK04694 2 LYLASRSPRRRELLQRLDVPFQTLQLDVPEVRAAD-------ESPDHYVQRVALEKAHAGLALVQAADADAIVLGSDTEV 74 (190) T ss_pred EEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEE T ss_conf 89988999999999878998399669998776877-------79899999999999999889877538998899238299 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 01234467610013469999985198037888665303786100468741100122205789999962068867332100 Q gi|254780813|r 81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY 160 (199) Q Consensus 81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y 160 (199) +++|+|+|||.|+++|++||+.|||++|+||||+|++.+++..|.++++|+|+|+++++++|++|+++ ++|++||||| T Consensus 75 ~~~g~ilgKP~~~~~A~~~L~~lsGk~H~v~T~v~l~~~~~~~~~~~~~t~v~f~~ls~~~I~~Yv~~--~e~~~kAG~Y 152 (190) T PRK04694 75 VLGERVFGKPVDVDDAIAMLRALSGRTHQVLTAVVLVCAQRAPAQALVVSEVTFDLLDDAQIAAYAAS--GEPMGKAGAY 152 (190) T ss_pred EECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCEEE T ss_conf 98999978989999999999997899389999999997898369999999999887999999999855--9986602174 Q ss_pred CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 0012233210001189753222769999999997898 Q gi|254780813|r 161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) +|||.|..||++|+|||+||||||+.+|+++|+++|. T Consensus 153 ~iqg~g~~li~~I~Gd~~nVvGLPl~~l~~~L~~~G~ 189 (190) T PRK04694 153 AIQGRAERFIRHLSGSYSGVMGLPLYQTSQLLTAFGA 189 (190) T ss_pred EECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCC T ss_conf 3234866565545888310446779999999997499 No 21 >pfam02545 Maf Maf-like protein. Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea. Probab=100.00 E-value=0 Score=387.97 Aligned_cols=186 Identities=31% Similarity=0.466 Sum_probs=173.6 Q ss_pred CCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCCEECHHHHH Q ss_conf 754742699899999997898859975898843242201344579989998887654333210137--754034134431 Q gi|254780813|r 3 KNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRY--PESFVIGCDQTM 80 (199) Q Consensus 3 ~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~--~~~~VI~aDtvv 80 (199) .+|||||+||||++||+++|++|++++|++||++++.+ .+|.+++.++|..||.++.... ++.+|||||||| T Consensus 1 m~lILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~------~~p~~~~~~lA~~KA~~~~~~~~~~~~ivi~aDtiv 74 (193) T pfam02545 1 MPLILASTSPRRKELLEDLGIPFEVIVSYFDEESVLYS------LDPREYVVDLACEKALAKVAQLAPDNALIIGADTVV 74 (193) T ss_pred CCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEE T ss_conf 99999379999999999779993997899898878676------786689999999999999997479996999936599 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 01234467610013469999985198037888665303786100468741100122205789999962068867332100 Q gi|254780813|r 81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY 160 (199) Q Consensus 81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y 160 (199) +|+|+|+|||.|.++|++||+.|||++|+||||+|++.+++ +|.++++|+|+|+++++++|++|+++ ++|++||||| T Consensus 75 ~~~g~il~KP~~~~eA~~~L~~lsGk~h~v~Tav~l~~~~~-~~~~~~~t~v~f~~ls~~~I~~Yl~~--~~~~~kaG~y 151 (193) T pfam02545 75 ILGGRILGKPKDKEEAREMLRKLSGNVHSVYTGLALISPEK-NLLFLEVTKVKFRDLSDEEIEAYVES--GEPLDKAGAY 151 (193) T ss_pred EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCE-EEEEEEEEEEEEECCCHHHHHHHHCC--CCCCCEEEEE T ss_conf 98999978999999999999998799669999999998993-99999989999957999999999706--9998788999 Q ss_pred CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 0012233210001189753222769999999997898 Q gi|254780813|r 161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) +|||.|..||++|+|||+||||||+.+|+++|+++|+ T Consensus 152 ~ie~~g~~~i~~I~G~~~~V~GLPl~~l~~~L~~~G~ 188 (193) T pfam02545 152 GIQGFGGLFIKKIEGDYYNVVGLPLPKLRSLLRRLGI 188 (193) T ss_pred EECCCHHHCEEEEECCCHHCCCCCHHHHHHHHHHCCC T ss_conf 8734855431234888101147889999999998689 No 22 >PRK04719 consensus Probab=100.00 E-value=0 Score=387.00 Aligned_cols=184 Identities=31% Similarity=0.463 Sum_probs=173.6 Q ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCCCEECHHHHH Q ss_conf 87547426998999999978988599758988432422013445799899988876543332-10137754034134431 Q gi|254780813|r 2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE-VSNRYPESFVIGCDQTM 80 (199) Q Consensus 2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~-v~~~~~~~~VI~aDtvv 80 (199) |.+|||||+||||++||+++|++|++++|++||...+ ..+|.+++.++|+.||++ ++..+|+.+|||||||| T Consensus 3 mm~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~-------~~~p~~~v~~lA~~Ka~~~~~~~~~~~~VigaDtvv 75 (188) T PRK04719 3 ILKLVLASGSPRRKELLAQLGYQFDVVLPDVEECKQE-------HETAAQYVLRLSRDKAQAGLALVKATSVVLGSDTIV 75 (188) T ss_pred CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEE T ss_conf 6889990799999999987799958978999978788-------889999999999999999988628998899708799 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 01234467610013469999985198037888665303786100468741100122205789999962068867332100 Q gi|254780813|r 81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY 160 (199) Q Consensus 81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y 160 (199) +++|+++|||.|.++|++||+.|||++|.|+||+|++.+++ .+.++++|+|+|+++++++|++|+++ ++|++||||| T Consensus 76 ~~~g~i~gKP~~~~~A~~~L~~lsGk~H~v~T~v~i~~~~~-~~~~~~~t~v~f~~ls~~~I~~Yl~~--~e~~~kAG~Y 152 (188) T PRK04719 76 VCDGQVLEKPKDFADAKRMLLKLSGRQHQVMTAVTVVSREK-QHSVVVTTEVWFKTLSEEEIEQYWQS--GEPCDKAGSY 152 (188) T ss_pred EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCE-EEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCEEEEE T ss_conf 98999978988999999999985799679999999998997-89999999999558999999999844--9956604886 Q ss_pred CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHC Q ss_conf 00122332100011897532227699999999978 Q gi|254780813|r 161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIE 195 (199) Q Consensus 161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~ 195 (199) +|||.|+.||++|+|||+||||||+.++.++|+++ T Consensus 153 ~ieg~g~~li~~I~G~~~~V~GLPl~~l~~~L~~~ 187 (188) T PRK04719 153 GIQGLGGRFVTRIEGSYHAVVGLPLYETDQLLHEF 187 (188) T ss_pred ECCCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHH T ss_conf 11228575130318985422087799999999976 No 23 >PRK01526 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=384.19 Aligned_cols=186 Identities=28% Similarity=0.438 Sum_probs=171.3 Q ss_pred CCEEECCCCHHHHHHHHHCCC-CCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCEECHHHHH Q ss_conf 754742699899999997898-859975898843242201344579989998887654333210137-754034134431 Q gi|254780813|r 3 KNIILASSSLSRRKLLQNSGI-QFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRY-PESFVIGCDQTM 80 (199) Q Consensus 3 ~~iILAS~S~~R~~lL~~~gi-~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~-~~~~VI~aDtvv 80 (199) .+|||||+||||++||+++|+ +|+++|+++||++... ..|.+++.++|..||.+++.++ ++.+|||||||| T Consensus 8 ~~iILAS~SprR~eLL~~~gi~~~~v~p~~idE~~~~~-------~~p~~~a~~lA~~KA~~v~~~~~~~~~VIgaDTvv 80 (205) T PRK01526 8 LPIILASSSPARIELLNRIKIIPSQIIPADIDETPNLR-------ELPAPLAIRLAYEKAIKIASQIEESAIIIAADTVA 80 (205) T ss_pred CCEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEE T ss_conf 96999079999999998779983299579988888866-------59999999999999999998529998999979399 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCC---CEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCC Q ss_conf 012344676100134699999851980378886653037861---00468741100122205789999962068867332 Q gi|254780813|r 81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKV---LRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSV 157 (199) Q Consensus 81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~---~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~a 157 (199) +++|+++|||.|.++|++||+.|||++|.|+||+|++.+++. .+.++++|.|+|+++++++|++||++ ++|++|| T Consensus 81 ~~~g~il~KP~~~eeA~~~L~~lsGk~H~v~Tgv~i~~~~~~~~~~~~~~~~t~v~f~~ls~~eI~~Yv~~--~e~~~kA 158 (205) T PRK01526 81 AVGRRILPKATTYEEVKNCIKMLSGRRHRVYTGLCIIKKENDQLTVRQKIVQTIVKFKKLSDEEINFYCSL--DEGIDKA 158 (205) T ss_pred EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCEE T ss_conf 98999968999999999999997799179998999998899838999899999999167999999999963--9853604 Q ss_pred CEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 1000012233210001189753222769999999997898 Q gi|254780813|r 158 GSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 158 G~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) |||+|||.|..||++|+|||+||||||+.+|+++|+++|+ T Consensus 159 G~y~ieg~g~~li~~I~Gd~~nV~GLPl~~l~~~L~~~G~ 198 (205) T PRK01526 159 GGCKISGYAEAFISFISGSYSNVMGLPLFETVNALTSLGF 198 (205) T ss_pred EEEEECCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHCCC T ss_conf 8998702747515232899753055769999999997699 No 24 >cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins. Probab=100.00 E-value=0 Score=383.35 Aligned_cols=179 Identities=38% Similarity=0.584 Sum_probs=171.7 Q ss_pred EEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCEECHHHHHCCC Q ss_conf 47426998999999978988599758988432422013445799899988876543332101377-54034134431012 Q gi|254780813|r 5 IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYP-ESFVIGCDQTMSLG 83 (199) Q Consensus 5 iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~-~~~VI~aDtvv~~~ 83 (199) |||||+||||++||+++|++|++++|+|||++++. .+|.+++.++|++||++++++++ +.+||||||||+++ T Consensus 1 iILaS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~-------~~p~~~~~~lA~~KA~~v~~~~~~~~iiI~aDtvv~~~ 73 (180) T cd00555 1 LILASASPRRRELLEQLGIPFEVVPSDIDETPIKG-------ESPEDYVLRLAEAKAEAVAARLPPDALVIGADTVVVLD 73 (180) T ss_pred CEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEC T ss_conf 98777999999999977998499789999898889-------99999999999999999997478998899818099989 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCC Q ss_conf 34467610013469999985198037888665303786100468741100122205789999962068867332100001 Q gi|254780813|r 84 SSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQID 163 (199) Q Consensus 84 g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y~ie 163 (199) |+|+|||.|+++|++||+.|||++|.||||+|++.+++.+|.++++|+|+|+++++++|++||++ ++|++|||||+|| T Consensus 74 g~i~~KP~~~~~A~~~L~~lsgk~h~v~T~v~v~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yv~~--~~~~~~aG~y~ie 151 (180) T cd00555 74 GRILGKPKDREEAREMLKRLSGRTHEVYTGVALIDPGGKLVTDVESTKVRFRELSDEEIEAYVAS--GEPLDKAGAYGIQ 151 (180) T ss_pred CEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEEEEEEEEEEECCHHHHHHHHHC--CCCCCEEEEEEEC T ss_conf 99847987699999967753799479999999998996799999999999961999999999853--9975601573305 Q ss_pred CCHHHHHHEECCCCCCCCCCCHHHHHHHH Q ss_conf 22332100011897532227699999999 Q gi|254780813|r 164 KEGIQLFSSIKGSYFSIVGLPIIELINDL 192 (199) Q Consensus 164 ~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L 192 (199) |.|..||++|+|||+||||||+.+|+++| T Consensus 152 ~~g~~~i~~i~G~~~~i~GLPl~~l~~~L 180 (180) T cd00555 152 GLGGALIERIEGDYSNVVGLPLPELLKLL 180 (180) T ss_pred CCHHHCEEEEECCCCCEECCCHHHHHHHC T ss_conf 59543526559973200467899999549 No 25 >PRK04056 Maf-like protein; Reviewed Probab=100.00 E-value=0 Score=378.54 Aligned_cols=178 Identities=24% Similarity=0.298 Sum_probs=167.1 Q ss_pred EEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-CEECHHHHHCCC Q ss_conf 4742699899999997898859975898843242201344579989998887654333210137754-034134431012 Q gi|254780813|r 5 IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPES-FVIGCDQTMSLG 83 (199) Q Consensus 5 iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~-~VI~aDtvv~~~ 83 (199) |||||+||||++||+++|++|+++||++||++++. .+|.+++.++|..||+++...+++. +||||||||+++ T Consensus 2 iILAS~SprR~~lL~~~gi~f~~~~~~iDE~~~~~-------~~p~~~v~~la~~Ka~~~~~~~~~~~~vi~aDtvv~~~ 74 (180) T PRK04056 2 IILASSSPTRANLLKEAGIEFEQKSVDFDEESIKK-------TSPKEFVYLAVKGKLEQALKLYGNNCNLLVADSVVSCD 74 (180) T ss_pred EEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEEEEC T ss_conf 89978999999999977999699718999988777-------89999999999999999998719998699978699989 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCC Q ss_conf 34467610013469999985198037888665303786100468741100122205789999962068867332100001 Q gi|254780813|r 84 SSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQID 163 (199) Q Consensus 84 g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y~ie 163 (199) |+++|||.|+++|++||+.|||++|.|+||+++..+ ...|.++++|+|+|+++++++|++|+++ ++|++|||||+|| T Consensus 75 g~ilgKP~~~~~A~~~L~~lsGk~h~v~T~v~~~~~-~~~~~~~~~t~v~f~~ls~~~I~~Yi~~--~~~~~kAG~y~Iq 151 (180) T PRK04056 75 GKILRKAKDKEEAREMLKLQSGNEISVLTCMIFISP-EKEVLDLSVTTYRFAKFDEDDLEKYLES--GLWQGKAGACMVE 151 (180) T ss_pred CEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEECC-CEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCEEEEEEEC T ss_conf 999879999999999999868993999999999729-9899999999999977999999999966--9985450587435 Q ss_pred CCHHHHHHEECCCCCCCCCCCHHHHHHHH Q ss_conf 22332100011897532227699999999 Q gi|254780813|r 164 KEGIQLFSSIKGSYFSIVGLPIIELINDL 192 (199) Q Consensus 164 ~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L 192 (199) |.|+.||++|+|||+||||||+.+|.++| T Consensus 152 ~~g~~li~~I~G~~~nV~GLPl~~L~~~L 180 (180) T PRK04056 152 GFHKKYIKSQSGNLSTAMGLNVEGLKGFL 180 (180) T ss_pred CCHHHCEEECCCCCCCCCCCCHHHHHHHC T ss_conf 28554387369779870377599999639 No 26 >PRK03797 consensus Probab=100.00 E-value=0 Score=376.36 Aligned_cols=180 Identities=36% Similarity=0.562 Sum_probs=169.5 Q ss_pred EEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCC Q ss_conf 47426998999999978988599758988432422013445799899988876543332101377540341344310123 Q gi|254780813|r 5 IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGS 84 (199) Q Consensus 5 iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g 84 (199) |||||+||||++||+++ ++|+++||++||+.. ..+|.+++.++|+.||.+++.++|+.+||||||||+++| T Consensus 2 lILAS~Sp~R~~lL~~~-i~f~v~~~~idE~~~--------~~~p~~~~~~lA~~KA~~v~~~~~~~~VIgaDtvv~~~g 72 (186) T PRK03797 2 IILASSSPRRREILSRF-FEIKVYPSNVSERSS--------IKDPREHALDLARKKALEVYSRFPKATIIAADTIVSLGG 72 (186) T ss_pred EEECCCCHHHHHHHHCC-CCCEEECCCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEEECC T ss_conf 89868999999999757-997997899898888--------889999999999999999998789986999862999899 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCCC Q ss_conf 44676100134699999851980378886653037861004687411001222057899999620688673321000012 Q gi|254780813|r 85 SIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDK 164 (199) Q Consensus 85 ~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y~ie~ 164 (199) +|+|||.|.++|++||+.|||++|.|+||+|++.+++.. .++++|+|+|+++++++|++||++ ++|++|||||+||| T Consensus 73 ~i~gKP~~~~eA~~~L~~lsGk~h~v~T~v~i~~~~~~~-~~~~~t~V~f~~l~~~~I~~Yv~~--~~~~~kAG~y~ieg 149 (186) T PRK03797 73 KILGKPKNEEEARKMLKTLSGKVHLVITGYCIIHNGKII-EGAEETEVKFRELSEDLIEWYIST--GEWKDKAGAYGIQG 149 (186) T ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCEEE-EEEEEEEEEECCCCHHHHHHHHHC--CCCCCEEEEEEECC T ss_conf 996799999999999999789926999999999999999-999999999657999999999963--99865118873232 Q ss_pred CHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 233210001189753222769999999997898 Q gi|254780813|r 165 EGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 165 ~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) .|..||++|+|||+||||||+..+.++| ++|+ T Consensus 150 ~g~~~i~~i~Gd~~~ViGLPl~~l~~ll-~~G~ 181 (186) T PRK03797 150 YGSIFVEWIRGDYYNVVGLPIKVIVKLI-ELGF 181 (186) T ss_pred CHHHHCCCCCCCCCCCCCCCHHHHHHHH-HCCC T ss_conf 8675102028996444178899999999-7689 No 27 >PRK01946 consensus Probab=100.00 E-value=0 Score=366.94 Aligned_cols=183 Identities=33% Similarity=0.479 Sum_probs=166.4 Q ss_pred CCEEECCCCHHHHHHHHHCCCCCEEEC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCEECHHHHH Q ss_conf 754742699899999997898859975-898843242201344579989998887654333210-137754034134431 Q gi|254780813|r 3 KNIILASSSLSRRKLLQNSGIQFSVVK-PNIDEREMEKKMDFSERKRPEKIALILAEKKALEVS-NRYPESFVIGCDQTM 80 (199) Q Consensus 3 ~~iILAS~S~~R~~lL~~~gi~f~~~~-~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~-~~~~~~~VI~aDtvv 80 (199) .+|||||+||||++||+++|++|++.+ |++||+..+ ..+|.+++.++|+.||.++. ..+|+.+|||||||| T Consensus 9 ~~iILAS~Sp~R~~lL~~~gi~f~v~~~~~~dE~~~~-------~~~~~~~~~~lA~~KA~~v~~~~~~~~lVI~aDtvv 81 (195) T PRK01946 9 YKIILASGSPRRKELLSGLGIDFEVRTLPDVDESYPD-------TLQREEIPLYLARLKAEAYRSMMKPNELLITADTIV 81 (195) T ss_pred CEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEE T ss_conf 9799978999999999977999789438998888888-------889889999999999999997248998899847399 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 01234467610013469999985198037888665303786100468741100122205789999962068867332100 Q gi|254780813|r 81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY 160 (199) Q Consensus 81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y 160 (199) +++|+|+|||.|.++|++||+.|||++|.|+||+|+..+++.. .++++|+|+|+++++++|++|+++ ++|++||||| T Consensus 82 ~~~g~i~~KP~~~~eA~~~L~~lsGk~h~v~T~v~v~~~~~~~-~~~~~t~v~f~~ls~~~I~~Yl~~--~~~~~kAG~y 158 (195) T PRK01946 82 WLDGKALGKPKDREEAVEMLRSLSGKTHQVITGVCFTTKEKQK-SFSDVTDVTFAELSDEEINYYVDN--YKPFDKAGSY 158 (195) T ss_pred EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCEEE-EEEEEEEEEEEECCHHHHHHHHHC--CCCCCEEEEE T ss_conf 8899997698999999999999789976999999999899278-999999999943999999999705--9976634579 Q ss_pred CCCC-CHHHHHHEECCCCCCCCCCCHHHHHHHHHHC Q ss_conf 0012-2332100011897532227699999999978 Q gi|254780813|r 161 QIDK-EGIQLFSSIKGSYFSIVGLPIIELINDLKIE 195 (199) Q Consensus 161 ~ie~-~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~ 195 (199) +||+ .|..||++|+|||+||||||+.+|+++|++. T Consensus 159 ~iqe~~g~~~i~~I~G~~~nVvGLPl~~l~~~L~~l 194 (195) T PRK01946 159 GIQEWIGFIGVKKIEGSYYNVMGLPVQKLYRELKKL 194 (195) T ss_pred EEECHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHH T ss_conf 615426660465428998752476799999999975 No 28 >TIGR00172 maf septum formation protein Maf; InterPro: IPR003697 Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea. The Maf protein shares substantial amino acid sequence identity with the Escherichia coli OrfE protein . . Probab=100.00 E-value=0 Score=366.79 Aligned_cols=187 Identities=30% Similarity=0.485 Sum_probs=174.2 Q ss_pred CCCCEEECCCCHHHHHHHHHCC--CCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCCC----- Q ss_conf 9875474269989999999789--88599758988432422013445799899988876543332-101377540----- Q gi|254780813|r 1 MIKNIILASSSLSRRKLLQNSG--IQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE-VSNRYPESF----- 72 (199) Q Consensus 1 m~~~iILAS~S~~R~~lL~~~g--i~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~-v~~~~~~~~----- 72 (199) |++.|||||+||||++||+++| +.|+++.+.|||+..+. ....+|.++|..+|+.||++ |+..++|.+ T Consensus 1 m~~~liLAS~SP~R~~LL~~~~Gii~f~~~v~~~dEnld~~----~~~~~p~~~V~~lak~KA~~Gva~~~~d~~~enPn 76 (212) T TIGR00172 1 MPKELILASTSPRRKELLEELGGIISFEVAVSEFDENLDKS----LKSTSPREYVLRLAKEKAQAGVAELLADALAENPN 76 (212) T ss_pred CCCCCEECCCCHHHHHHHHHHCCCCCCHHEECCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC T ss_conf 99873424788689999998478635011002012010123----55579689999999999987799861030013744 Q ss_pred -------EECHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCC---EEEEEEEEECCCC-C---CCEEEEEEEEEECCCC Q ss_conf -------34134431012-344676100134699999851980---3788866530378-6---1004687411001222 Q gi|254780813|r 73 -------VIGCDQTMSLG-SSIYHKPVDMLEAEKNLLRISGKK---HRISSAYVLVQNG-K---VLRHHISVAQLTMYKL 137 (199) Q Consensus 73 -------VI~aDtvv~~~-g~i~~KP~~~~eA~~~L~~lsg~~---h~v~T~~~i~~~~-~---~~~~~~~~t~v~f~~l 137 (199) ||||||||..+ |+++|||+|+++|.+||+++||+. |.|+||++++... + ..+..++.|.|+|+++ T Consensus 77 eidkPkliigaD~~v~~~sG~~~~KP~~~e~A~~~L~k~~G~~deP~~v~Ta~aL~~~~~~enf~~~~~~~~t~V~F~~~ 156 (212) T TIGR00172 77 EIDKPKLIIGADTVVILDSGEILGKPKTKEEAAEFLRKLSGQEDEPVEVYTAVALIDSVQRENFHLLTFLDVTKVHFRAL 156 (212) T ss_pred CCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCEEEEECCCCEEEEECCC T ss_conf 13587379971358882787103587888899999875168868871342110123102786236641244313563267 Q ss_pred CHH-HHHHHHHHCCCCCCCCCCEECCCCCHHHHHHEECC-CCCCCCCCCHHHHHHHHH Q ss_conf 057-89999962068867332100001223321000118-975322276999999999 Q gi|254780813|r 138 SEE-FIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKG-SYFSIVGLPIIELINDLK 193 (199) Q Consensus 138 ~~~-~I~~Yi~~~~~~~~~~aG~y~ie~~g~~~i~~I~G-d~~~V~GLPi~~l~~~L~ 193 (199) +|+ +|+.||++ ++|++|||||+|||.|+.||++|+| ||+|||||||..|++.|+ T Consensus 157 ~~~r~I~~Yv~s--~~pl~~AGaf~~eG~G~~li~k~~Gr~~~~vvGLpl~~l~~~L~ 212 (212) T TIGR00172 157 DDEREIEKYVES--GEPLECAGAFKIEGFGALLIKKIEGRDYSNVVGLPLEKLLKLLR 212 (212) T ss_pred CCHHHHHHHHHC--CCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHCC T ss_conf 926789997405--88731155244428774026641576744210548799986339 No 29 >KOG1509 consensus Probab=100.00 E-value=6.2e-44 Score=293.35 Aligned_cols=188 Identities=29% Similarity=0.434 Sum_probs=172.1 Q ss_pred CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC------CCCEE Q ss_conf 987547426998999999978988599758988432422013445799899988876543332101377------54034 Q gi|254780813|r 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYP------ESFVI 74 (199) Q Consensus 1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~------~~~VI 74 (199) |-.++||||+||||++|++.+|+++++++++|+|+.++.. ..+|.+++..+|+.||+.+.++.+ ..++| T Consensus 8 ~~~riiL~S~s~rrk~i~~~~G~~~~~~~S~feEnl~k~~-----~~~p~~yv~~tA~~KA~~I~erL~~~Ed~~~~~vi 82 (209) T KOG1509 8 KGKRIILASASPRRKQILAEMGLNLEVVVSTFEENLIKSS-----FETPEDYVVETAKQKAEEIIERLGDGEDSFPDVVI 82 (209) T ss_pred CCCEEEEECCCCHHHHHHHHCCCCEEEEECCCHHHCHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 6837998048904899998749836997245411120212-----58878889999898999999986325667755321 Q ss_pred CHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCC----CCCEEEEEEEEEECCCCCHHHHHHHHHHCC Q ss_conf 1344310123446761001346999998519803788866530378----610046874110012220578999996206 Q gi|254780813|r 75 GCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG----KVLRHHISVAQLTMYKLSEEFIKFYLNKIG 150 (199) Q Consensus 75 ~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~----~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~ 150 (199) +||||+..+++||+||.|+++|.+||+++||+.|.|+||+++.... -....+.+.|+|+|.+++++.|+.||++ T Consensus 83 ~adtI~~~~~~Iyekp~d~~~a~~~l~rl~~~~~~v~t~v~l~~~~~~~g~~~~~~~d~t~VyF~eIpee~ie~yV~s-- 160 (209) T KOG1509 83 SADTITTDGGEIYEKPVDKKDAKRMLKRLSGRPHSVFTGVALIHCSSQLGTRVSEFYDETKVYFGEIPEEVIEEYVDS-- 160 (209) T ss_pred CCCEEEEECCEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEECCEEEEEEEECCCCHHHHHHHHHC-- T ss_conf 122799736478337897357899998752787420466899974045771330331234788155989999999875-- Q ss_pred CCCCCCCCEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHC Q ss_conf 886733210000122332100011897532227699999999978 Q gi|254780813|r 151 KKALLSVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIE 195 (199) Q Consensus 151 ~~~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~ 195 (199) ++|+++||||+||+.|+.||++|+||++||||||+..+.+.|.+. T Consensus 161 G~~lkkAGgy~Iq~~ga~lI~~I~Gd~~nVvGLPl~~t~K~l~~~ 205 (209) T KOG1509 161 GEPLKKAGGYGIQGLGAPLIESVVGDFDNVVGLPLELTEKLLNKV 205 (209) T ss_pred CCCHHHCCCEECCCCCCHHEEEECCCCCCCCCCCHHHHHHHHHHH T ss_conf 873211221011445400123102674330147289999999998 No 30 >cd00985 Maf_Ham1 Maf_Ham1. Maf, a nucleotide binding protein, has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides, such as hypoxanthine/xanthine NTP, but not standard nucleotides. Probab=99.96 E-value=1.2e-29 Score=204.75 Aligned_cols=122 Identities=30% Similarity=0.347 Sum_probs=115.9 Q ss_pred EEECCCCHHHHHHHHHCC-CCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCC Q ss_conf 474269989999999789-8859975898843242201344579989998887654333210137754034134431012 Q gi|254780813|r 5 IILASSSLSRRKLLQNSG-IQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLG 83 (199) Q Consensus 5 iILAS~S~~R~~lL~~~g-i~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~ 83 (199) |||||+||+|+++|+++| ++|++++|++||+..+. .|.+++.++|..||++++..+++.+||+|||+++++ T Consensus 1 iiLAS~S~~R~~~l~~~~~~~~~~~~~~idE~~~~~--------~~~~~~~~~A~~KA~~v~~~~~~~~vi~~DT~v~~~ 72 (131) T cd00985 1 LILASGSPRRLEELKQIGGIEFEVLPSDIDETGLKG--------EPEDTVEELALLKARAVAERLPDAPVIADDTGLVVD 72 (131) T ss_pred CEEECCCHHHHHHHHHCCCCCEEEECCCCCCCCCCC--------CHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEC T ss_conf 999679989999999668999599679989888888--------989999999999998889777996599616368889 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEEC Q ss_conf 344676100134699999851980378886653037861004687411001 Q gi|254780813|r 84 SSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTM 134 (199) Q Consensus 84 g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f 134 (199) |++++||.+.++|++||+.+||++|+++||+|++.+++.++.+...|+++| T Consensus 73 g~i~~Kp~~~~~a~~~L~~lsgr~h~~~t~v~l~~~~~~~~~~~~~~~~~i 123 (131) T cd00985 73 GRPGGKPARFAEALEMLRGLSGRTAEFVTAVALVDPDGKIITFEGETEGKI 123 (131) T ss_pred CEECCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEEEEE T ss_conf 987348999999999887615886999999999948998999999999999 No 31 >PRK00120 putative deoxyribonucleotide triphosphate pyrophosphatase; Reviewed Probab=96.47 E-value=0.029 Score=35.06 Aligned_cols=114 Identities=23% Similarity=0.219 Sum_probs=64.7 Q ss_pred CCCCEEECCCCHHHH----HHHHHCCCCCEEEC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEC Q ss_conf 987547426998999----99997898859975-8988432422013445799899988876543332101377540341 Q gi|254780813|r 1 MIKNIILASSSLSRR----KLLQNSGIQFSVVK-PNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIG 75 (199) Q Consensus 1 m~~~iILAS~S~~R~----~lL~~~gi~f~~~~-~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~ 75 (199) ||++|++||+-+... ++|..+|++ +++ .+++-..+++ .+.+. ...|..||+.++... +..||+ T Consensus 1 Mm~ki~~aT~N~~K~~E~~~il~~~~~~--i~~~~d~~~~e~~E-----~g~t~----~eNA~~KA~~~~~~~-~~pvla 68 (197) T PRK00120 1 MMKKLVLASHNAGKLRELAALLAPFGLE--VVSQGELGLPEPEE-----TGLTF----VENALIKARHAAKAT-GLPALA 68 (197) T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCE--EEEHHHCCCCCCCC-----CCCCH----HHHHHHHHHHHHHHH-CCCEEE T ss_conf 9863999929867999999988765988--97578869999888-----89779----999999999999874-897797 Q ss_pred HHHHHC---CCCC--CC-----CCC-CHHHHHHHHHHHHCC-----CCEEEEEEEEECCCCCCCEEE Q ss_conf 344310---1234--46-----761-001346999998519-----803788866530378610046 Q gi|254780813|r 76 CDQTMS---LGSS--IY-----HKP-VDMLEAEKNLLRISG-----KKHRISSAYVLVQNGKVLRHH 126 (199) Q Consensus 76 aDtvv~---~~g~--i~-----~KP-~~~~eA~~~L~~lsg-----~~h~v~T~~~i~~~~~~~~~~ 126 (199) =||=+. ++|. ++ |+. .+.+.....|..+.+ ++.++.|.++++.+++.+..+ T Consensus 69 DDSGL~i~aL~g~PGvySar~ag~~~~d~~~~~~ll~~l~~~~~~~r~A~f~~~i~~~~~~~~~~~f 135 (197) T PRK00120 69 DDSGLAVDALGGAPGVYSARYAGEHGNDAANNEKLLEELRDVPDEDRSARFVCVLVLAWPDGHPLVA 135 (197) T ss_pred CCCEEEEHHHCCCCCCCEEEHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEE T ss_conf 1467998331499983111044427889999999999975688555449999999999579818999 No 32 >cd00515 HAM1 NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides such as XTP to XMP and ITP to IMP, but not the standard nucleotides, in the presence of Mg or Mn ions. The enzyme exists as a homodimer. The HAM1 protein may be acting as an NTPase by hydrolyzing the HAP triphosphate. Probab=95.33 E-value=0.18 Score=30.22 Aligned_cols=107 Identities=19% Similarity=0.145 Sum_probs=62.6 Q ss_pred EEECCCCHHHH----HHHHHCCCCCEEEC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHH Q ss_conf 47426998999----99997898859975--8988432422013445799899988876543332101377540341344 Q gi|254780813|r 5 IILASSSLSRR----KLLQNSGIQFSVVK--PNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQ 78 (199) Q Consensus 5 iILAS~S~~R~----~lL~~~gi~f~~~~--~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDt 78 (199) |++||+-+... ++|..+++++...+ +++.|.. .+ -...|..||+.++.... ..+|+=|| T Consensus 1 i~~aT~N~~K~~E~~~~l~~~~i~i~~~~~~~~~~E~~----------~t----~~enA~~Ka~~~~~~~~-~~~iaDDS 65 (183) T cd00515 1 IVFATGNKGKLKEFKEILAPFGIEVVSLKDIIDIEETG----------ST----FEENALLKARAAAEALG-LPVLADDS 65 (183) T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC----------CC----HHHHHHHHHHHHHHHHC-CCEEEECC T ss_conf 99990887899999998855497798546578998888----------89----99999999999999838-98698420 Q ss_pred HHC---CCCC--C----CCCC-CHHHHHHHHHHHHC---CCCEEEEEEEEECCCCCCCEEE Q ss_conf 310---1234--4----6761-00134699999851---9803788866530378610046 Q gi|254780813|r 79 TMS---LGSS--I----YHKP-VDMLEAEKNLLRIS---GKKHRISSAYVLVQNGKVLRHH 126 (199) Q Consensus 79 vv~---~~g~--i----~~KP-~~~~eA~~~L~~ls---g~~h~v~T~~~i~~~~~~~~~~ 126 (199) =+. ++|. + +.++ .+.+.....|+.+. +++.++.|.+|++.+++.+..+ T Consensus 66 GL~v~aL~g~PGvysar~~~~~~d~~~~~~ll~~l~~~~~r~A~f~~~l~~~~~~~~~~~f 126 (183) T cd00515 66 GLCVDALNGFPGVYSARFAGEHDDAENNEKLLELLEGDEDRSAYFVCVIALVDPDGEPLVF 126 (183) T ss_pred HHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCEEEE T ss_conf 4579987599972127775447879999999997155457539999999999569958999 No 33 >COG0127 Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism] Probab=89.72 E-value=1.9 Score=23.84 Aligned_cols=113 Identities=21% Similarity=0.185 Sum_probs=68.4 Q ss_pred CCCEEECCCCHHHHH----HHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHH Q ss_conf 875474269989999----9997898859975898843242201344579989998887654333210137754034134 Q gi|254780813|r 2 IKNIILASSSLSRRK----LLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCD 77 (199) Q Consensus 2 ~~~iILAS~S~~R~~----lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aD 77 (199) |++|++||+-+-... +|...|+++......-+|-.+ ......-...|..||+.++.. .+..+|+=| T Consensus 1 ~~ki~~AT~N~~K~~E~~~il~~~~~ei~~~~~~~~~~e~---------eEtg~tf~enA~~Ka~~~a~~-~g~pviaDD 70 (194) T COG0127 1 MMKIVLATGNKGKLRELKSILAPGGIEIESLKELGVEIEV---------EETGLTFEENALLKARAAAKA-TGLPVIADD 70 (194) T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCC---------HHHHHHHHHHHHHHHHHHHHH-CCCCEEEEC T ss_conf 9479998598677999999855048336872445787880---------004568999999999999740-399589965 Q ss_pred HHHC---CCCC--C-----CCCCCHHHHHHHHHHHHCC---CCEEEEEEEEECCCCCCCE Q ss_conf 4310---1234--4-----6761001346999998519---8037888665303786100 Q gi|254780813|r 78 QTMS---LGSS--I-----YHKPVDMLEAEKNLLRISG---KKHRISSAYVLVQNGKVLR 124 (199) Q Consensus 78 tvv~---~~g~--i-----~~KP~~~~eA~~~L~~lsg---~~h~v~T~~~i~~~~~~~~ 124 (199) |=+. ++|- + .+...|.......|+.+++ |+.++.|.+++..++.... T Consensus 71 SGL~v~aL~G~PGvYSar~~~~~~d~~~~~klL~~l~~~~~R~A~F~~vi~~~~~~~~~~ 130 (194) T COG0127 71 SGLCVDALNGFPGVYSARFAGEADDTIGNEKLLKLLEGVPDRSAYFVCVIVLARDGGEPI 130 (194) T ss_pred CCEEEECCCCCCCCEEEHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCEE T ss_conf 834771137998402201114676134399999983478777089999999980899479 No 34 >pfam01725 Ham1p_like Ham1 family. This family consists of the HAM1 protein and hypothetical archaeal bacterial and C. elegans proteins. HAM1 controls 6-N-hydroxylaminopurine (HAP) sensitivity and mutagenesis in S. cerevisiae HAM1. The HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions. Probab=86.43 E-value=3 Score=22.55 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=61.1 Q ss_pred EEECCCCHHHH----HHHHHCCCCCEEE---CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHH Q ss_conf 47426998999----9999789885997---5898843242201344579989998887654333210137754034134 Q gi|254780813|r 5 IILASSSLSRR----KLLQNSGIQFSVV---KPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCD 77 (199) Q Consensus 5 iILAS~S~~R~----~lL~~~gi~f~~~---~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aD 77 (199) |++||+-+... .+|..++++.... ..++.|. +.+. ...|..||+.+.+... ..+|+-| T Consensus 1 I~~aT~N~~K~~E~~~~l~~~~i~~~~l~~~~~~~~E~----------~~t~----~enA~~Ka~~~~~~~~-~p~iaDD 65 (181) T pfam01725 1 IVFATGNKGKLKEIKAILGDLGIEVIDLKHDPIEVEET----------GDTF----EENALLKAKAAAKALG-KPVLADD 65 (181) T ss_pred CEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC----------CCCH----HHHHHHHHHHHHHHHC-CCEEEEC T ss_conf 99994888899999998856496587411268898888----------8899----9999999999999708-9779824 Q ss_pred HHHCC---CCC--CCCCC----CHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEE Q ss_conf 43101---234--46761----00134699999851980378886653037861004 Q gi|254780813|r 78 QTMSL---GSS--IYHKP----VDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRH 125 (199) Q Consensus 78 tvv~~---~g~--i~~KP----~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~ 125 (199) |=..+ +|. ++.+. .+.+.-.++|+....++.++.|.+|++.+++.+.. T Consensus 66 SGL~i~aL~g~PGi~sar~~~~~~~~~ll~~l~~~~~r~A~f~~~l~~~~~~~~~~~ 122 (181) T pfam01725 66 SGLCVDALNGFPGVYSARFADTLNNEKLLELLEGVEDRSAYFVCVIALADPDGKVLV 122 (181) T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCEEE T ss_conf 067899875997314099987600778999807998875999999999938995899 No 35 >TIGR01139 cysK cysteine synthase A; InterPro: IPR005859 This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine. Probab=85.79 E-value=2.2 Score=23.46 Aligned_cols=163 Identities=17% Similarity=0.226 Sum_probs=96.6 Q ss_pred CCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCC Q ss_conf 26998999999978988599758988432422013445799899988876543332101377540341344310123446 Q gi|254780813|r 8 ASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIY 87 (199) Q Consensus 8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~ 87 (199) .|=|.=||.||+.+|-+...- |...-+.=|..||+.+.+..|+.+++- - -|++--= T Consensus 91 etMS~ERr~lL~ayGAeLvLT--------------------pg~~GMkGAI~KA~Ei~~~~Pn~y~m~-~---QF~NpAN 146 (312) T TIGR01139 91 ETMSIERRKLLKAYGAELVLT--------------------PGAEGMKGAIAKAEEIAESTPNSYFML-Q---QFENPAN 146 (312) T ss_pred CCHHHHHHHHHHHCCCEEEEC--------------------CCCCCCHHHHHHHHHHHHHCCCCEEEC-C---CCCCCCH T ss_conf 432689999998709658872--------------------812376667899999998687926522-4---5787221 Q ss_pred CCCCHHHHHHHHHHHHCCC-CEE-EEEEE----EECCCCCCCEEEE----EEEEEECCCCCHHHHHHHHHHCCCCCCCCC Q ss_conf 7610013469999985198-037-88866----5303786100468----741100122205789999962068867332 Q gi|254780813|r 88 HKPVDMLEAEKNLLRISGK-KHR-ISSAY----VLVQNGKVLRHHI----SVAQLTMYKLSEEFIKFYLNKIGKKALLSV 157 (199) Q Consensus 88 ~KP~~~~eA~~~L~~lsg~-~h~-v~T~~----~i~~~~~~~~~~~----~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~a 157 (199) -.-+-..-|.+.|+++-|+ ... ++.|+ +|---++.++..- +.+.|=.-+..-..|.-=++ ..+. +. T Consensus 147 P~~Hr~TTg~EIw~d~dg~G~~D~FVaG~GTGGTITGvG~~LK~~~pkG~~~~~~AVEP~~SPVLSggLA--G~~i--kp 222 (312) T TIGR01139 147 PEIHRKTTGPEIWRDTDGKGRLDAFVAGVGTGGTITGVGEVLKEKKPKGKDIKIVAVEPAESPVLSGGLA--GEEI--KP 222 (312) T ss_pred HHHHHHCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH--HHHC--CC T ss_conf 4761620278999962789831179973236851547899874007899558999872774313443330--0102--66 Q ss_pred CEECCCCCHHHHHHEE-C-CCCCCCCCCC---HHHHHH-HHHHCCCC Q ss_conf 1000012233210001-1-8975322276---999999-99978989 Q gi|254780813|r 158 GSYQIDKEGIQLFSSI-K-GSYFSIVGLP---IIELIN-DLKIEKVI 198 (199) Q Consensus 158 G~y~ie~~g~~~i~~I-~-Gd~~~V~GLP---i~~l~~-~L~~~gii 198 (199) |.=+|||.|+-||=.| + -=|+-|+... -+++.+ +-+++||+ T Consensus 223 GpHKIQGiGAGFIP~~Ln~~v~D~vi~V~~EeAi~~ARrLA~eEGiL 269 (312) T TIGR01139 223 GPHKIQGIGAGFIPKVLNRSVIDEVITVSDEEAIETARRLAKEEGIL 269 (312) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCEE T ss_conf 94964127978726336841362147407556899999999867801 No 36 >TIGR00212 hemC porphobilinogen deaminase; InterPro: IPR000860 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents hydroxymethylbilane synthase (or porphobilinogen deaminase, 2.5.1.61 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain . The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis , . A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) . ; GO: 0004418 hydroxymethylbilane synthase activity, 0033014 tetrapyrrole biosynthetic process. Probab=77.71 E-value=2.1 Score=23.54 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=61.4 Q ss_pred EEECCCCHHHHHHHHHCCCCCEEECC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-----CCCCCCC----- Q ss_conf 47426998999999978988599758--98843242201344579989998887654333210-----1377540----- Q gi|254780813|r 5 IILASSSLSRRKLLQNSGIQFSVVKP--NIDEREMEKKMDFSERKRPEKIALILAEKKALEVS-----NRYPESF----- 72 (199) Q Consensus 5 iILAS~S~~R~~lL~~~gi~f~~~~~--~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~-----~~~~~~~----- 72 (199) -+.|+||+||+..|+..--++++.+- |||=+--|-. .+.....+++.-|=.|-.... ..+..+. T Consensus 121 A~vGTSS~RR~aql~~~RPDl~~~~lRGNi~TRl~Kl~----~Gg~~DAiiLA~AGL~RLg~~~~~i~~~~~~~~~~PA~ 196 (312) T TIGR00212 121 AKVGTSSLRRKAQLKALRPDLEIEPLRGNIDTRLRKLD----EGGEYDAIILAAAGLKRLGLENDVITEVLDPEVMLPAV 196 (312) T ss_pred CEEECCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHC----CCCCCHHHHHHHHHHHCCCCCCHHHHHCCCHHHCCCCC T ss_conf 88974579999999830899449974698799999851----88820489998887530254101343147811417886 Q ss_pred ---EEC-----HHHHH-CCCCCCCCCCCHHHH--HHHHHHHHCCCCEEEEEEEEECCCC Q ss_conf ---341-----34431-012344676100134--6999998519803788866530378 Q gi|254780813|r 73 ---VIG-----CDQTM-SLGSSIYHKPVDMLE--AEKNLLRISGKKHRISSAYVLVQNG 120 (199) Q Consensus 73 ---VI~-----aDtvv-~~~g~i~~KP~~~~e--A~~~L~~lsg~~h~v~T~~~i~~~~ 120 (199) +|| -||-+ ..=.+|-+++....- =+.+|+.|-|-.|.-+.+++-+.+. T Consensus 197 GQG~i~ve~R~dD~~~~~il~~i~h~~t~~~~~aER~fL~~L~GgC~~Pig~~a~~~~~ 255 (312) T TIGR00212 197 GQGAIAVECRKDDTEIKEILKEINHEETAVEVTAERAFLKELDGGCQTPIGAYAEYEGD 255 (312) T ss_pred CCCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC T ss_conf 67579999845877999986202888899999999999987288964331468898337 No 37 >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] Probab=69.75 E-value=3.8 Score=21.98 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=78.4 Q ss_pred CCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCC Q ss_conf 26998999999978988599758988432422013445799899988876543332101377540341344310123446 Q gi|254780813|r 8 ASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIY 87 (199) Q Consensus 8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~ 87 (199) .+.|+-|+++|+.+|=+....+. ++.. ..-+..||+...+..|+. .+-.|| | T Consensus 94 ~~~S~er~~~l~a~GAevi~t~~--~~g~-----------------~~~a~~~a~el~~~~p~~-~~~~~Q--------f 145 (300) T COG0031 94 ETMSQERRKLLRALGAEVILTPG--APGN-----------------MKGAIERAKELAAEIPGY-AVWLNQ--------F 145 (300) T ss_pred CCCCHHHHHHHHHCCCEEEECCC--CCCC-----------------HHHHHHHHHHHHHHCCCC-EECHHH--------C T ss_conf 98999999999982998998379--8774-----------------599999999999749883-675534--------3 Q ss_pred CCCCHH-----HHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCC--CEE Q ss_conf 761001-----3469999985198037888665303786100468741100122205789999962068867332--100 Q gi|254780813|r 88 HKPVDM-----LEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSV--GSY 160 (199) Q Consensus 88 ~KP~~~-----~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~a--G~y 160 (199) +-|.|. -.+.+.|..+.|+--.++.|+= .+..+ ..+ ++ ++|.-..+ +.-+.-...+.++... |.+ T Consensus 146 ~NpaN~~aH~~tT~~EI~~~~~~~~d~fVagvG---TGGTi-tGv--ar-~Lk~~~p~-i~iv~vdP~~S~~~~~G~g~~ 217 (300) T COG0031 146 ENPANPEAHYETTGPEIWQQTDGKVDAFVAGVG---TGGTI-TGV--AR-YLKERNPN-VRIVAVDPEGSVLLSGGEGPH 217 (300) T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC---CCHHH-HHH--HH-HHHHHCCC-CEEEEECCCCCCCCCCCCCCC T ss_conf 896478989761289999973799998999378---52658-999--99-99862898-379997778885557998886 Q ss_pred CCCCCHHHHHHEEC--CCCCCCCCCCH----HHHHHHHHHCCCC Q ss_conf 00122332100011--89753222769----9999999978989 Q gi|254780813|r 161 QIDKEGIQLFSSIK--GSYFSIVGLPI----IELINDLKIEKVI 198 (199) Q Consensus 161 ~ie~~g~~~i~~I~--Gd~~~V~GLPi----~~l~~~L~~~gii 198 (199) +|||.|..|+..+- .-++.|+-.+- .....+.+++|+. T Consensus 218 ~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGi~ 261 (300) T COG0031 218 KIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLL 261 (300) T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCEE T ss_conf 27777988677324643360599978799999999999983912 No 38 >pfam01379 Porphobil_deam Porphobilinogen deaminase, dipyromethane cofactor binding domain. Probab=67.29 E-value=5.6 Score=20.93 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=28.0 Q ss_pred HHHHHC--CCCCEE--ECCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHH-------HHHHCCCCCCCEECH Q ss_conf 999978--988599--7589884324220134-457998999888765433-------321013775403413 Q gi|254780813|r 16 KLLQNS--GIQFSV--VKPNIDEREMEKKMDF-SERKRPEKIALILAEKKA-------LEVSNRYPESFVIGC 76 (199) Q Consensus 16 ~lL~~~--gi~f~~--~~~~iDE~~~~~~~~~-~~~~~p~~~~~~lA~~Ka-------~~v~~~~~~~~VI~a 76 (199) +.|++. +++|++ +...-|......-... ..+.-..++-..|-..++ +++....++.+.|+| T Consensus 21 ~~L~~~~p~~~~ei~~i~T~GD~~~~~~l~~~ggkG~Ftkele~aLl~~~iDiAVHS~KDlP~~~~~~l~i~a 93 (213) T pfam01379 21 EKLKELCPDIEVEIVIIKTTGDKILDKPLAKIGGKGLFTKELEEALLNGEIDLAVHSLKDVPTELPEGLVLGA 93 (213) T ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEE T ss_conf 9999868998689999978784436665311698414269999999709878787604657764798746876 No 39 >TIGR01136 cysKM cysteine synthases; InterPro: IPR005856 This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine. Probab=66.70 E-value=11 Score=19.16 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=86.3 Q ss_pred CCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCC Q ss_conf 26998999999978988599758988432422013445799899988876543332101377540341344310123446 Q gi|254780813|r 8 ASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIY 87 (199) Q Consensus 8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~ 87 (199) .|-|.=||++|+.+|=++...++ +.-+.=|..||+.+.+++|+..++- || |+|--= T Consensus 94 etmS~ERr~~l~ayGA~L~LT~~--------------------~~GM~GAi~kA~el~~~~p~~~~~l-~Q---F~NpaN 149 (315) T TIGR01136 94 ETMSLERRKLLKAYGAELILTPA--------------------EEGMKGAIDKAEELAAETPNKYVML-DQ---FENPAN 149 (315) T ss_pred CCHHHHHHHHHHHCCCEEEEECC--------------------CCCCHHHHHHHHHHHHHCCCCEEEC-CC---CCCCCH T ss_conf 87178999999870966988373--------------------3575778999999998588962103-32---588521 Q ss_pred CCCCHHHHHHHHHHHHCCC-CEEEEEEE----EECCCCCCCEEEEEE-EEEE---CCCCCHHHHHHHHHHCCCCCCCCCC Q ss_conf 7610013469999985198-03788866----530378610046874-1100---1222057899999620688673321 Q gi|254780813|r 88 HKPVDMLEAEKNLLRISGK-KHRISSAY----VLVQNGKVLRHHISV-AQLT---MYKLSEEFIKFYLNKIGKKALLSVG 158 (199) Q Consensus 88 ~KP~~~~eA~~~L~~lsg~-~h~v~T~~----~i~~~~~~~~~~~~~-t~v~---f~~l~~~~I~~Yi~~~~~~~~~~aG 158 (199) -+-+-..-+-+.|+++-|+ .|+| +|+ +|.--++.++...-. +.|+ ..+-.-..|-.=++ ..+. +.| T Consensus 150 p~~H~~TTGpEIw~dt~G~id~FV-aG~GTGGTItGvgr~LK~~~pkG~~i~i~avEP~~s~~Ls~GLA--G~~i--~pG 224 (315) T TIGR01136 150 PEAHRKTTGPEIWRDTDGRIDHFV-AGVGTGGTITGVGRVLKEQNPKGKNIQIVAVEPAESPVLSGGLA--GEEI--KPG 224 (315) T ss_pred HHHHHCCCHHHHHHHCCCCEEEEE-EECCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHC--CCCC--CCC T ss_conf 476230565799973289235899-71156751116898986326899617999975687301001112--2223--679 Q ss_pred EECCCCCHHHHHHEEC--CCCCCCCCC Q ss_conf 0000122332100011--897532227 Q gi|254780813|r 159 SYQIDKEGIQLFSSIK--GSYFSIVGL 183 (199) Q Consensus 159 ~y~ie~~g~~~i~~I~--Gd~~~V~GL 183 (199) -=+|||.|.-||=.|= -=++.|+-. T Consensus 225 pHKIqgig~gFiP~iLd~~~~D~v~~V 251 (315) T TIGR01136 225 PHKIQGIGAGFIPKILDRSLIDEVITV 251 (315) T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEC T ss_conf 287778885557631371133104641 No 40 >PRK01066 porphobilinogen deaminase; Provisional Probab=64.67 E-value=6.3 Score=20.60 Aligned_cols=59 Identities=12% Similarity=0.078 Sum_probs=25.1 Q ss_pred CEEECCCCHH--------HHHHHHH--CCCCCEE--ECCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHH Q ss_conf 5474269989--------9999997--8988599--758988432422013-44579989998887654333 Q gi|254780813|r 4 NIILASSSLS--------RRKLLQN--SGIQFSV--VKPNIDEREMEKKMD-FSERKRPEKIALILAEKKAL 62 (199) Q Consensus 4 ~iILAS~S~~--------R~~lL~~--~gi~f~~--~~~~iDE~~~~~~~~-~~~~~~p~~~~~~lA~~Ka~ 62 (199) +|.+||-+.. -++.|+. -+++|++ +...-|......-.. -..+.-..++-..|-..++. T Consensus 20 ~IrIGTR~S~LAl~Qa~~V~~~L~~~~p~~~~ei~~i~T~GD~~~~~~L~~iggkG~Ftkele~aLl~g~iD 91 (234) T PRK01066 20 PLRIASRKSPLAKAQVHECLRLLRSFFPKLWFQISTTTTQGDLDQKTPLHLVENTGFFTDDVDFLVLSGKCD 91 (234) T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHCCCCCEEHHHHHHHHHCCCCC T ss_conf 469995887999999999999999768997399999963373145776877489745489999999769877 No 41 >COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Probab=60.46 E-value=14 Score=18.51 Aligned_cols=63 Identities=21% Similarity=0.142 Sum_probs=46.6 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 9989998887654333210137754034134431012344676100134699999851980378 Q gi|254780813|r 47 KRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRI 110 (199) Q Consensus 47 ~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v 110 (199) -.|.+.++..|.+.++-....+.+-.++..|+ -.++-++++|+.+.+++.++|...-|-.-.+ T Consensus 287 G~~e~~AKAvalAl~~~alaenR~~~~~lF~s-~~~~~el~~k~~~~~e~i~fL~~~f~GGTD~ 349 (437) T COG2425 287 GFKEQWAKAVALALMRIALAENRDCYVILFDS-EVIEYELYEKKIDIEELIEFLSYVFGGGTDI 349 (437) T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEEEEECC-CCEEEEECCCCCCHHHHHHHHHHHCCCCCCH T ss_conf 82889999999999999988430538999525-2025550577457999999996506898885 No 42 >COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism] Probab=59.94 E-value=5.2 Score=21.13 Aligned_cols=48 Identities=27% Similarity=0.332 Sum_probs=36.9 Q ss_pred HHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHEECCCCCCCCCCCHHH Q ss_conf 5789999962068867332100001223321000118975322276999 Q gi|254780813|r 139 EEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIE 187 (199) Q Consensus 139 ~~~I~~Yi~~~~~~~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~ 187 (199) +++|..|+.. ....+.-||||++=|.-..=...++|....+-|||+.. T Consensus 315 d~~i~~~~~~-~~~viGICGG~QmLG~~i~Dp~g~Eg~~~~~~GLgLld 362 (486) T COG1492 315 DEKILEYARK-GGDVIGICGGYQMLGRRLKDPSGIEGAKGEAEGLGLLD 362 (486) T ss_pred HHHHHHHHHC-CCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE T ss_conf 9999999747-99799986357764334148644457634337856257 No 43 >cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB). HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II. HMBS is found in all organisms except viruses. Probab=58.31 E-value=7.8 Score=20.01 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=52.8 Q ss_pred CEEECCCCHHHHHHHHHCCCCCEE--ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH----HCCCC-C------ Q ss_conf 547426998999999978988599--7589884324220134457998999888765433321----01377-5------ Q gi|254780813|r 4 NIILASSSLSRRKLLQNSGIQFSV--VKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEV----SNRYP-E------ 70 (199) Q Consensus 4 ~iILAS~S~~R~~lL~~~gi~f~~--~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v----~~~~~-~------ 70 (199) .-+.|++|+||+..|+...-+..+ +-=|+|-+--|-... +. + -++...|-.+-... ...++ + T Consensus 117 ga~IGTSS~RR~aql~~~~pdl~i~~iRGNV~TRl~KL~~g--~~-D--aiILA~AGL~RLgl~~~i~~~l~~~~~~PA~ 191 (292) T cd00494 117 GSVVGTSSLRRQAQLKRKRPDLKFEPLRGNVDTRLRKLDEG--EY-D--AIILAAAGLKRLGLEDRITQYLSPEVMLPAV 191 (292) T ss_pred CCEEEECCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHCC--CC-C--EEEEHHHHHHHCCCCCCCCCCCCHHCCCCCC T ss_conf 98785147437999998689995467658899999985167--87-4--7754465675547842023003631078876 Q ss_pred ---CCEECH---HH-HHCCCCCCCCCCCHHHH---HHHHHHHHCCCCEEEEEEEEECCCCC Q ss_conf ---403413---44-31012344676100134---69999985198037888665303786 Q gi|254780813|r 71 ---SFVIGC---DQ-TMSLGSSIYHKPVDMLE---AEKNLLRISGKKHRISSAYVLVQNGK 121 (199) Q Consensus 71 ---~~VI~a---Dt-vv~~~g~i~~KP~~~~e---A~~~L~~lsg~~h~v~T~~~i~~~~~ 121 (199) .+-|-| |+ +...=. -++-+.+..+ -+.+|+.|.|-.|.-+.+.+-+.++. T Consensus 192 gQGaiave~r~~d~~~~~~l~-~in~~~t~~~~~aER~~l~~l~ggC~~Piga~a~i~~~~ 251 (292) T cd00494 192 GQGALAIECRKGDEELLALLK-PLNHEETALCVLAERAFLRELEGGCQVPIGVYAELDGGE 251 (292) T ss_pred CCCEEEEEEECCCHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC T ss_conf 653068887248988888887-755878899999999999984899998458899996998 No 44 >COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism] Probab=57.55 E-value=8.5 Score=19.79 Aligned_cols=113 Identities=23% Similarity=0.287 Sum_probs=58.1 Q ss_pred EEECCCCHHHHHHHHHCCCCCEE--ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----CC-CC------- Q ss_conf 47426998999999978988599--758988432422013445799899988876543332101----37-75------- Q gi|254780813|r 5 IILASSSLSRRKLLQNSGIQFSV--VKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSN----RY-PE------- 70 (199) Q Consensus 5 iILAS~S~~R~~lL~~~gi~f~~--~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~----~~-~~------- 70 (199) -+.||+|.||+..|+....++++ +-=|+|-+.-|-. .+ .-..+++.-|-.|-.-... .+ |+ T Consensus 121 a~VGTSSlRR~aql~~~rPdl~i~~lRGNVdTRL~KL~----~g-~yDAIILA~AGL~RLgl~~~~~~~l~p~~~~PA~g 195 (307) T COG0181 121 AVVGTSSLRRQAQLKALRPDLKIEPLRGNVDTRLRKLD----EG-EYDAIILAAAGLKRLGLENRITEILDPEEFLPAPG 195 (307) T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH----CC-CCCHHHHHHHHHHHCCCCCCCEEECCHHHCCCCCC T ss_conf 83145268799999986999769966576888999861----67-85299999999986287422206347542689888 Q ss_pred CCEEC--H---HH-HHCCCCCCCCCCCHHHH---HHHHHHHHCCCCEEEEEEEEECCCCCCC Q ss_conf 40341--3---44-31012344676100134---6999998519803788866530378610 Q gi|254780813|r 71 SFVIG--C---DQ-TMSLGSSIYHKPVDMLE---AEKNLLRISGKKHRISSAYVLVQNGKVL 123 (199) Q Consensus 71 ~~VI~--a---Dt-vv~~~g~i~~KP~~~~e---A~~~L~~lsg~~h~v~T~~~i~~~~~~~ 123 (199) .=.|+ | |. +...=. -+..+.+..+ -+.+|+.|-|-.|.-+.+.+.+..+..+ T Consensus 196 QGal~ie~R~~d~~~~~ll~-~i~~~~t~~~v~aERa~l~~L~ggC~~PIg~~a~~~~~~~l 256 (307) T COG0181 196 QGALAIECRAGDEKVLELLA-ELNDEDTRICVTAERAFLRELEGGCQVPIGAYAELTGGGEL 256 (307) T ss_pred CCEEEEEEECCCHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEE T ss_conf 86699999639678999998-61582088999999999996289987712888998589739 No 45 >PRK02491 putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein; Reviewed Probab=56.99 E-value=18 Score=17.83 Aligned_cols=105 Identities=20% Similarity=0.277 Sum_probs=63.1 Q ss_pred CCEEECCCCHHH----HHHHHHCCCCCEEEC-----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCE Q ss_conf 754742699899----999997898859975-----89884324220134457998999888765433321013775403 Q gi|254780813|r 3 KNIILASSSLSR----RKLLQNSGIQFSVVK-----PNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFV 73 (199) Q Consensus 3 ~~iILAS~S~~R----~~lL~~~gi~f~~~~-----~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~V 73 (199) ..|+.|+.-+-. +++|..+|+.+.... |+++|+ +.+ =...|..||+.+++.. +..+ T Consensus 128 dtilIAT~N~GK~kEf~~l~~~~g~~V~sL~D~pdlPEVeET----------G~T----FeENA~lKA~~~ak~t-G~pv 192 (328) T PRK02491 128 DTILIATRNEGKTKEFRKLFGKLGYKVENLNDYPDLPEVAET----------GMT----FEENARLKAETISRLT-GKMV 192 (328) T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCC----------CCC----HHHHHHHHHHHHHHHH-CCCE T ss_conf 779998379656999999887549589788778999997787----------768----8999999999999987-9968 Q ss_pred ECHHHHHC---CCCC--C----C-CCC-CHHHHHHHHHHHHC------CCCEEEEEEEEECCCCCC Q ss_conf 41344310---1234--4----6-761-00134699999851------980378886653037861 Q gi|254780813|r 74 IGCDQTMS---LGSS--I----Y-HKP-VDMLEAEKNLLRIS------GKKHRISSAYVLVQNGKV 122 (199) Q Consensus 74 I~aDtvv~---~~g~--i----~-~KP-~~~~eA~~~L~~ls------g~~h~v~T~~~i~~~~~~ 122 (199) |+=|+=++ ++|+ | | |.. .|.+...+.|..|. .++.++++++++..+++. T Consensus 193 LADDSGL~VDAL~G~PGIySARyAG~~a~D~~N~~KLL~eL~~v~~~~~RsArFvCvLvla~pdg~ 258 (328) T PRK02491 193 LADDSGLKVDALGGLPGVWSARFSGPDATDAENNAKLLHELAMVFDQKDRSAQFHTTLVVAAPNKD 258 (328) T ss_pred EECCCCEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCC T ss_conf 962776188104899872233415899999999999999865368877750899999999987999 No 46 >PRK00072 hemC porphobilinogen deaminase; Reviewed Probab=55.27 E-value=12 Score=18.94 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=19.1 Q ss_pred EEECCCCHHHHHHHHHCCCCCEE--ECCCCCCCC Q ss_conf 47426998999999978988599--758988432 Q gi|254780813|r 5 IILASSSLSRRKLLQNSGIQFSV--VKPNIDERE 36 (199) Q Consensus 5 iILAS~S~~R~~lL~~~gi~f~~--~~~~iDE~~ 36 (199) -+.|++|+||+..|+.+.-+..+ +-=|+|-+- T Consensus 122 a~IGTSS~RR~aql~~~~pdl~~~~iRGNv~TRl 155 (300) T PRK00072 122 AVVGTSSLRRQAQLLALRPDLEIKDLRGNVDTRL 155 (300) T ss_pred CEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHH T ss_conf 8885046508999998679995677668889999 No 47 >KOG1252 consensus Probab=54.26 E-value=8.4 Score=19.83 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=73.6 Q ss_pred CCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCC Q ss_conf 26998999999978988599758988432422013445799899988876543332101377540341344310123446 Q gi|254780813|r 8 ASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIY 87 (199) Q Consensus 8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~ 87 (199) ++-|.-|+.+|+.+|-.....++..-= ..| ..+..||..+.++.|++.+ +||--.-.+-. T Consensus 136 ~~ms~Ek~~~l~a~Gaeii~tp~a~~~------------~~~-----e~ai~~a~~l~~~~pna~~--l~Qf~np~Np~- 195 (362) T KOG1252 136 EKMSKEKRILLRALGAEIILTPPAAGM------------KGP-----ESAIGKAEELLNKTPNAYI--LDQFHNPGNPL- 195 (362) T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHCC------------CCH-----HHHHHHHHHHHHHCCCHHH--HHHHCCCCCCC- T ss_conf 245178999999718879956868724------------771-----8899999999986887387--88742888853- Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEEE----EECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCC Q ss_conf 761001346999998519803788866----5303786100468741100122205789999962068867332100001 Q gi|254780813|r 88 HKPVDMLEAEKNLLRISGKKHRISSAY----VLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQID 163 (199) Q Consensus 88 ~KP~~~~eA~~~L~~lsg~~h~v~T~~----~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y~ie 163 (199) -+...-+-+.|..++|+--.+.-++ ++.--++-+....-.++|.--+-.+..+-.|... +. -.|+|| T Consensus 196 --~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~------g~-~~~~I~ 266 (362) T KOG1252 196 --AHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKP------GP-TFHKIQ 266 (362) T ss_pred --CCCCCCCHHHHHHHCCCCCEEEECCCCCCEEEHHHHHHHHHCCCCEEEEECCCCCEEECCCCC------CC-CCCCCC T ss_conf --012564289999826997789962688850200668899758997799856873302047768------98-765400 Q ss_pred CCHHHHHHEE Q ss_conf 2233210001 Q gi|254780813|r 164 KEGIQLFSSI 173 (199) Q Consensus 164 ~~g~~~i~~I 173 (199) |.|.-|+..+ T Consensus 267 GIGyg~~p~~ 276 (362) T KOG1252 267 GIGYGFIPTT 276 (362) T ss_pred CCCCCCCCCC T ss_conf 0245767642 No 48 >TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process. Probab=53.46 E-value=2.2 Score=23.37 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=38.9 Q ss_pred HHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHH--EECCCCCCCCCCCHHHHHHHHHH Q ss_conf 578999996206886733210000122332100--01189753222769999999997 Q gi|254780813|r 139 EEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFS--SIKGSYFSIVGLPIIELINDLKI 194 (199) Q Consensus 139 ~~~I~~Yi~~~~~~~~~~aG~y~ie~~g~~~i~--~I~Gd~~~V~GLPi~~l~~~L~~ 194 (199) +++|-+|.... +-.++-||||++ +|..+++ ++|++..++-||-|....-.+++ T Consensus 312 ~~~i~~~~~~i-g~V~GICGGYQ~--LG~~l~D~~~~E~~~~~~~GLgLLD~~T~f~~ 366 (502) T TIGR00313 312 AEEILDLAKEI-GIVIGICGGYQM--LGKELVDKEKVESDVGDVEGLGLLDAKTEFRE 366 (502) T ss_pred HHHHHHHHHCC-CEEEEECCCHHH--HHHHHCCCCCCCCCCCEECCCCCCCCEEEECC T ss_conf 67999996069-889983476021--00310363222677100022212541456717 No 49 >cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. Probab=51.49 E-value=11 Score=19.08 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=20.2 Q ss_pred HHHHHHCCCCCEEECCCCCCCCC Q ss_conf 99999789885997589884324 Q gi|254780813|r 15 RKLLQNSGIQFSVVKPNIDEREM 37 (199) Q Consensus 15 ~~lL~~~gi~f~~~~~~iDE~~~ 37 (199) .++|++.|+.|+-+|+.+|-=.+ T Consensus 22 L~IlE~~~IS~EHmPSGID~~si 44 (76) T cd04911 22 LSILEDNGISYEHMPSGIDDISI 44 (76) T ss_pred HHHHHHCCCCEEECCCCCCEEEE T ss_conf 99999839986455888660899 No 50 >cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis. Probab=49.67 E-value=23 Score=17.11 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=41.9 Q ss_pred EECCCCHHHHHH---HHHCCCCCEEEC----CCCCCCCCCCC------CCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCC Q ss_conf 742699899999---997898859975----89884324220------13445799899988876543332-10137754 Q gi|254780813|r 6 ILASSSLSRRKL---LQNSGIQFSVVK----PNIDEREMEKK------MDFSERKRPEKIALILAEKKALE-VSNRYPES 71 (199) Q Consensus 6 ILAS~S~~R~~l---L~~~gi~f~~~~----~~iDE~~~~~~------~~~~~~~~p~~~~~~lA~~Ka~~-v~~~~~~~ 71 (199) =|.....||..+ +...|++|+.++ .+.++...... .......++.++++.++..++-. +.+..-+. T Consensus 6 nL~~~~dR~~~~~~~~~~~~l~~~~~~Avdg~~~~~~~~~~~~~~~~~~~~~~~lt~gEigC~lSH~~~w~~~v~~~~~~ 85 (128) T cd06532 6 NLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKLWQKIVESNLEY 85 (128) T ss_pred ECCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHCCHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 89896899999999997769873588603410279999987430434430489887435789999999999999759983 Q ss_pred CEECHHHHHCCCC Q ss_conf 0341344310123 Q gi|254780813|r 72 FVIGCDQTMSLGS 84 (199) Q Consensus 72 ~VI~aDtvv~~~g 84 (199) .+|-=|=++...+ T Consensus 86 ~lIlEDDv~~~~~ 98 (128) T cd06532 86 ALILEDDAILDPD 98 (128) T ss_pred EEEEECCCEECCC T ss_conf 9998178356799 No 51 >TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process. Probab=47.13 E-value=11 Score=19.16 Aligned_cols=97 Identities=21% Similarity=0.329 Sum_probs=48.9 Q ss_pred HHHHHHHHHCCCCCEE---ECCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHHCCCCCCCEECHHHHHCCCCC Q ss_conf 8999999978988599---7589884324220134457998999888---765433321013775403413443101234 Q gi|254780813|r 12 LSRRKLLQNSGIQFSV---VKPNIDEREMEKKMDFSERKRPEKIALI---LAEKKALEVSNRYPESFVIGCDQTMSLGSS 85 (199) Q Consensus 12 ~~R~~lL~~~gi~f~~---~~~~iDE~~~~~~~~~~~~~~p~~~~~~---lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~ 85 (199) .||++||+.|||.|.. +.=|+-=+.+-++.+ .-+.=...|-.. |-..+|.-|..-.| -|.|.|=.+..-. T Consensus 197 ~~Rr~if~~MGi~F~Ln~EvGrD~~l~~LLe~YD-AVFlGvGTY~~~~ggLP~eDa~GV~~ALP---FLianTr~lmGl~ 272 (480) T TIGR01318 197 SRRREIFTAMGIEFKLNTEVGRDISLDDLLEDYD-AVFLGVGTYRSMRGGLPGEDAPGVLKALP---FLIANTRQLMGLP 272 (480) T ss_pred HHHHHHHHHCCCEEECCCEEECCCCHHHHHHHCC-EEEEECCCCCCCCCCCCCCCCCCHHHHHH---HHHHCCCEECCCC T ss_conf 9999999758927865816503255544431148-48961143343128778877421666424---7766152123788 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 467610013469999985198037888 Q gi|254780813|r 86 IYHKPVDMLEAEKNLLRISGKKHRISS 112 (199) Q Consensus 86 i~~KP~~~~eA~~~L~~lsg~~h~v~T 112 (199) -||+|..-=+-...|-.++||+.-|.. T Consensus 273 eyGrPiaGw~~~~P~~~~~Gk~VVVLG 299 (480) T TIGR01318 273 EYGRPIAGWEPEEPLIDVEGKRVVVLG 299 (480) T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEC T ss_conf 877744677766774234776689858 No 52 >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A Probab=45.25 E-value=27 Score=16.68 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=69.9 Q ss_pred HHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCC---C-- Q ss_conf 99999978988599758988432422013445799899988876543332101377540341344310123446---7-- Q gi|254780813|r 14 RRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIY---H-- 88 (199) Q Consensus 14 R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~---~-- 88 (199) -.+||+.++|++.+++.+-||.. ..+.+.......+..|-.+++--+|.-.+..+.- . T Consensus 107 T~~lL~~~~Ipy~il~~~~~~~~-----------------~~i~~ai~~~~~~~~P~allv~k~tf~~~~~~~~~~~~~~ 169 (361) T TIGR03297 107 TLSLLDALEIPWEVLSTDNDEAL-----------------AQIERALAHALATSRPYALVVRKGTFASYKLKGEPANPLP 169 (361) T ss_pred HHHHHHHCCCCEEECCCCHHHHH-----------------HHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCCCCCCC T ss_conf 29999976998799086567899-----------------9999999999997997899983774331103555556577 Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHC---CCCCCCCCCEECCC-- Q ss_conf 6100134699999851980378886653037861004687411001222057899999620---68867332100001-- Q gi|254780813|r 89 KPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKI---GKKALLSVGSYQID-- 163 (199) Q Consensus 89 KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~---~~~~~~~aG~y~ie-- 163 (199) ..-++++|.+.+...-+..-.++ ...|. +-.|+-.+-++. ..+-|...|+.+-- T Consensus 170 ~~~~Re~aI~~il~~~~~~~~iV-----sTTG~----------------~SREL~~~r~~~~~~~~~~F~~vG~MG~as~ 228 (361) T TIGR03297 170 TLMTREEAIAAILDHLPDNTVIV-----STTGK----------------TSRELYELRDRIGQGHARDFLTVGSMGHASQ 228 (361) T ss_pred CCCCHHHHHHHHHHHCCCCCEEE-----ECCCC----------------CHHHHHHHHHHHCCCCCCCEEECCCCCHHHH T ss_conf 88899999999998379997799-----77886----------------3799999998627887653573488514769 Q ss_pred -CCHHHH------HHEECCCCCCCCCCCHHHHHHHH Q ss_conf -223321------00011897532227699999999 Q gi|254780813|r 164 -KEGIQL------FSSIKGSYFSIVGLPIIELINDL 192 (199) Q Consensus 164 -~~g~~~------i~~I~Gd~~~V~GLPi~~l~~~L 192 (199) +.|..+ |=.|+||=+-.|.|--..+.... T Consensus 229 ialG~al~~~~~~Vi~lDGDGs~LMh~Gslati~~~ 264 (361) T TIGR03297 229 IALGLALARPDQRVVCLDGDGAALMHMGGLATIGTQ 264 (361) T ss_pred HHHHHHHHCCCCEEEEEECCHHHHHCCCHHHHHHHC T ss_conf 999998628897089990868998544068788743 No 53 >PHA01516 hypothetical protein Probab=42.92 E-value=8 Score=19.94 Aligned_cols=17 Identities=29% Similarity=0.381 Sum_probs=12.7 Q ss_pred HHEECCCCCCCCCCCHH Q ss_conf 00011897532227699 Q gi|254780813|r 170 FSSIKGSYFSIVGLPII 186 (199) Q Consensus 170 i~~I~Gd~~~V~GLPi~ 186 (199) =..|.|||+|++||-+. T Consensus 42 ~NnI~gDY~Na~GlqMw 58 (98) T PHA01516 42 DNNIKPDYCNANGLQMW 58 (98) T ss_pred HCCCCCCCCCCHHHHHH T ss_conf 46777442353204566 No 54 >PRK04262 hypothetical protein; Provisional Probab=41.74 E-value=31 Score=16.34 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=11.6 Q ss_pred HHCCCCCCCEECHHHH Q ss_conf 1013775403413443 Q gi|254780813|r 64 VSNRYPESFVIGCDQT 79 (199) Q Consensus 64 v~~~~~~~~VI~aDtv 79 (199) -+...+..+|||+||- T Consensus 128 ~sg~~~~~LVV~aD~~ 143 (346) T PRK04262 128 KSGMIKYALAIGADTA 143 (346) T ss_pred HCCCCCEEEEEECCCC T ss_conf 7399976999831333 No 55 >TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex. Probab=34.64 E-value=39 Score=15.65 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=30.0 Q ss_pred EEECCCCHHH-----HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 4742699899-----99999789885997589884324220134457998999888765433 Q gi|254780813|r 5 IILASSSLSR-----RKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKA 61 (199) Q Consensus 5 iILAS~S~~R-----~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka 61 (199) ||+||.|=+. .++|+++|++|++.-. +...+|+.+.......+. T Consensus 3 iIMGS~SD~~~m~~a~~~L~~fgi~~e~~V~-------------SAHRTP~~~~~ya~~a~~ 51 (159) T TIGR01162 3 IIMGSDSDLETMKKAAEILEEFGIPYELRVV-------------SAHRTPELMFEYAKEAEE 51 (159) T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEEE-------------CCCCCHHHHHHHHHHHHH T ss_conf 8536725478999999999855996678986-------------067780889999999986 No 56 >cd02064 Flavokinase_C Riboflavin kinase (Flavokinase). This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin. 5'-phospho transferase and ATP:FMN-adenylyltransferase activities . The C-terminal domain has FMN-adenylyltransferase activitie. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD . A domain has been identified in the N-terminal region that is well conserved in all the bacterial FAD synthetases.This domain has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases . Probab=33.92 E-value=41 Score=15.58 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=45.2 Q ss_pred ECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCC Q ss_conf 42699899999997898859975898843242201344579989998887654333210137754034134431012344 Q gi|254780813|r 7 LASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSI 86 (199) Q Consensus 7 LAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i 86 (199) +-++...|.++|+++|+++.+. -+|+++-. ..+|.+....+- ....+..+|+|.|= - T Consensus 53 ~l~~~~~k~~~l~~~gid~~~~-i~F~~~~~--------~ls~~~Fi~~~l-------~~l~~~~iVvG~Df-------~ 109 (179) T cd02064 53 LLTTLEEKLELLAALGVDYLLV-LPFDKEFA--------SLSAEEFVKDLL-------VKLNAKHVVVGFDF-------R 109 (179) T ss_pred CCCCHHHHHHHHHHCCCCEEEE-ECCCHHHH--------CCCHHHHHHHHH-------HCCCCEEEEECCCC-------C T ss_conf 2589999999998669999998-44788886--------399999999874-------14796399977730-------2 Q ss_pred CCCCCHHHHHHHHHHHHCCCC Q ss_conf 676100134699999851980 Q gi|254780813|r 87 YHKPVDMLEAEKNLLRISGKK 107 (199) Q Consensus 87 ~~KP~~~~eA~~~L~~lsg~~ 107 (199) ||| +++--.++|+.++.+. T Consensus 110 FG~--~r~G~~~~L~~~~~~~ 128 (179) T cd02064 110 FGK--GRSGNAELLRELGEKY 128 (179) T ss_pred CCC--CCCCCHHHHHHHHHHH T ss_conf 578--9887999999999872 No 57 >COG4285 Uncharacterized conserved protein [Function unknown] Probab=33.77 E-value=41 Score=15.56 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=36.8 Q ss_pred CCHHHHHHHHHHHHCCCCEEE--EEEEEECCCCCCCEEEEEEEEEEC------------CCCCHHHHHHHHHHCCCCCCC Q ss_conf 100134699999851980378--886653037861004687411001------------222057899999620688673 Q gi|254780813|r 90 PVDMLEAEKNLLRISGKKHRI--SSAYVLVQNGKVLRHHISVAQLTM------------YKLSEEFIKFYLNKIGKKALL 155 (199) Q Consensus 90 P~~~~eA~~~L~~lsg~~h~v--~T~~~i~~~~~~~~~~~~~t~v~f------------~~l~~~~I~~Yi~~~~~~~~~ 155 (199) |..-.++.+.|+.++-..-.| +++-.++++ .|...+ .-+.| ..+-..-|.+|+....----- T Consensus 13 p~~lkhtv~sLr~~~~p~y~v~~V~~~~Li~E---pW~~~T-~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGi 88 (253) T COG4285 13 PYSLKHTVRSLRLFAPPYYAVDRVDAQFLIKE---PWEETT-LLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGI 88 (253) T ss_pred HHHHHHHHHHHHHHCCCHHEEEEEEEHEEECC---CCHHCE-EEEEECCCCCCHHHHHHCCHHHHHHHHHHHCCCEEEEE T ss_conf 18999999999864431114777530100058---551020-79993288774387775212255587887558708998 Q ss_pred CCCEECCCCCHHHHHHEECCCCCCCCC Q ss_conf 321000012233210001189753222 Q gi|254780813|r 156 SVGSYQIDKEGIQLFSSIKGSYFSIVG 182 (199) Q Consensus 156 ~aG~y~ie~~g~~~i~~I~Gd~~~V~G 182 (199) ||||| .|...|+--+|.-.+|+| T Consensus 89 CAG~Y----Fg~~~veF~~p~~~~vvg 111 (253) T COG4285 89 CAGGY----FGSAYVEFAEPTGIEVVG 111 (253) T ss_pred ECCCC----CCCEEEEEECCCCCEEEE T ss_conf 32554----353479983589963465 No 58 >COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Probab=33.52 E-value=41 Score=15.54 Aligned_cols=43 Identities=28% Similarity=0.365 Sum_probs=28.5 Q ss_pred CEEECCCCHHH-----HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 54742699899-----999997898859975898843242201344579989998887654 Q gi|254780813|r 4 NIILASSSLSR-----RKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEK 59 (199) Q Consensus 4 ~iILAS~S~~R-----~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~ 59 (199) -||++|.|-+. .++|+.+|++|++.-. +...+|..+....... T Consensus 6 ~IIMGS~SD~~~mk~Aa~~L~~fgv~ye~~Vv-------------SAHRTPe~m~~ya~~a 53 (162) T COG0041 6 GIIMGSKSDWDTMKKAAEILEEFGVPYEVRVV-------------SAHRTPEKMFEYAEEA 53 (162) T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCEEEEEE-------------ECCCCHHHHHHHHHHH T ss_conf 99955702399999999999984997599998-------------4467989999999999 No 59 >pfam03438 Pneumo_NS1 Pneumovirus NS1 protein. This non-structural protein is one of two found in pneumoviruses. The protein is about 140 amino acids in length. The NS1 protein appears to be important for efficient replication but not essential. The NS1 protein has been shown by yeast two-hybrid to interact with the viral P protein. This protein is also known as the 1C protein. It has also been shown that NS1 can potently inhibit transcription and RNA replication. Probab=30.74 E-value=32 Score=16.21 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=26.3 Q ss_pred EEEEEECCCCCCCEEEE-------------EEEEEEC-CCCCHHHHHHHHHHC Q ss_conf 88665303786100468-------------7411001-222057899999620 Q gi|254780813|r 111 SSAYVLVQNGKVLRHHI-------------SVAQLTM-YKLSEEFIKFYLNKI 149 (199) Q Consensus 111 ~T~~~i~~~~~~~~~~~-------------~~t~v~f-~~l~~~~I~~Yi~~~ 149 (199) +|.+-++.+++-+|.-. +-++++| ++++|.++..|.+.. T Consensus 77 fttmpilqnggyiwel~elthc~q~ngl~ddncei~fskrlsds~l~~y~nql 129 (136) T pfam03438 77 FTSMPILQNGGYIWELMELTHCFQPNGLIDDNCEIKFSKKLSDSELAKYMNQL 129 (136) T ss_pred CCCCCEECCCCEEEEHHHHHHHCCCCCCCCCCCEEEEEHHCCHHHHHHHHHHH T ss_conf 62420550696531224355423558633578258873433877899999999 No 60 >COG4090 Uncharacterized protein conserved in archaea [Function unknown] Probab=30.66 E-value=34 Score=16.09 Aligned_cols=41 Identities=22% Similarity=0.193 Sum_probs=33.1 Q ss_pred CHHHHHCCCCCCCCCC-CHHHHHHHHHHHHCCCCEEEEEEEEECC Q ss_conf 1344310123446761-0013469999985198037888665303 Q gi|254780813|r 75 GCDQTMSLGSSIYHKP-VDMLEAEKNLLRISGKKHRISSAYVLVQ 118 (199) Q Consensus 75 ~aDtvv~~~g~i~~KP-~~~~eA~~~L~~lsg~~h~v~T~~~i~~ 118 (199) .+|+||.++|-.+-|- .+.++|++.+..+|++... |+|... T Consensus 85 ~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkli---GvCfm~ 126 (154) T COG4090 85 SADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLI---GVCFMN 126 (154) T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEE---EEEHHH T ss_conf 445899975644676789979999999843898658---751898 No 61 >COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only] Probab=28.65 E-value=40 Score=15.61 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=30.7 Q ss_pred EECHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 3413443101234467610013469999985198037888 Q gi|254780813|r 73 VIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISS 112 (199) Q Consensus 73 VI~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T 112 (199) +++-|-+++.=|..-.+-.++..|...|+.|.|+.|.|-. T Consensus 42 tv~p~D~lwhLGDl~~~~n~~~~a~~IlerLnGrkhlv~G 81 (186) T COG4186 42 TVGPDDVLWHLGDLSSGANRERAAGLILERLNGRKHLVPG 81 (186) T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEC T ss_conf 2784436888111011455265899999976993899607 No 62 >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated Probab=26.75 E-value=54 Score=14.82 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=47.3 Q ss_pred HHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--H-----CCCCCCCEECHHHHHCCCC Q ss_conf 89999999789885997589884324220134457998999888765433321--0-----1377540341344310123 Q gi|254780813|r 12 LSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEV--S-----NRYPESFVIGCDQTMSLGS 84 (199) Q Consensus 12 ~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v--~-----~~~~~~~VI~aDtvv~~~g 84 (199) ..|.+-|+.+|.+|..+...+|+... +.+|.++...++..---.+ + +.-++.+-.|||-+++ +| T Consensus 121 ~~ra~el~~lGvd~I~vH~G~D~Q~~--------g~~p~~~l~~v~~~~~~~vAVAGGi~~~t~~~~v~~GAdIvIV-Gg 191 (429) T PRK07028 121 VKRAVELEELGVDIINVHVGIDQQML--------GKDPLELLKKVSEEVSIPIAAAGGLDAETAVKAVEAGADIVIV-GG 191 (429) T ss_pred HHHHHHHHHCCCCEEEEEEEECHHHC--------CCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEE-CC T ss_conf 99999999709988999762335531--------7984999999997559718996687877699999759989998-94 Q ss_pred CCCCCCCHHHHHHHHHHH Q ss_conf 446761001346999998 Q gi|254780813|r 85 SIYHKPVDMLEAEKNLLR 102 (199) Q Consensus 85 ~i~~KP~~~~eA~~~L~~ 102 (199) -+-|..|+.+|.+.++. T Consensus 192 -aI~~a~dp~~aAr~ir~ 208 (429) T PRK07028 192 -NIYKSADVTGAARDIRE 208 (429) T ss_pred -CCCCCCCHHHHHHHHHH T ss_conf -00579997999999999 No 63 >pfam00469 F-protein Negative factor, (F-Protein) or Nef. Nef protein accelerates virulent progression of AIDS by its interaction with cellular proteins involved in signal transduction and host cell activation. Nef has been shown to bind specifically to a subset of the Src kinase family. Probab=26.54 E-value=54 Score=14.80 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=8.7 Q ss_pred CCCCCCHHHHHHHHH Q ss_conf 467610013469999 Q gi|254780813|r 86 IYHKPVDMLEAEKNL 100 (199) Q Consensus 86 i~~KP~~~~eA~~~L 100 (199) +==.|.+.+-|..+= T Consensus 91 VPLRpMTYK~A~DlS 105 (220) T pfam00469 91 VPLRPMTYKLAVDMS 105 (220) T ss_pred CCCCCCCHHHHHHHH T ss_conf 888875488875457 No 64 >PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional Probab=26.35 E-value=35 Score=15.96 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=3.9 Q ss_pred HHHHHHHHHH Q ss_conf 8999888765 Q gi|254780813|r 49 PEKIALILAE 58 (199) Q Consensus 49 p~~~~~~lA~ 58 (199) -.+++..++. T Consensus 137 ~~qlVr~~~~ 146 (524) T PRK02910 137 FYQLVRALAK 146 (524) T ss_pred HHHHHHHHHH T ss_conf 9999999852 No 65 >KOG0335 consensus Probab=26.12 E-value=55 Score=14.75 Aligned_cols=106 Identities=18% Similarity=0.277 Sum_probs=60.0 Q ss_pred ECHHHHHCC------CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHH Q ss_conf 413443101------23446761001346999998519803788866530378610046874110012220578999996 Q gi|254780813|r 74 IGCDQTMSL------GSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLN 147 (199) Q Consensus 74 I~aDtvv~~------~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~ 147 (199) =.||++..+ .-+-++=+.+..|--+-|..|+..+..++-+..|...|--+. .++.|.-.+++.+ |+.||- T Consensus 348 ~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~---~V~hVInyDmP~d-~d~YvH 423 (482) T KOG0335 348 RGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIP---NVKHVINYDMPAD-IDDYVH 423 (482) T ss_pred HHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC---CCCEEEEEECCCC-HHHHHH T ss_conf 032699999861798745603325563799998776469866798703665478876---8743588636752-466777 Q ss_pred HCCCCCCCCCCEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHC Q ss_conf 206886733210000122332100011897532227699999999978 Q gi|254780813|r 148 KIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIE 195 (199) Q Consensus 148 ~~~~~~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~ 195 (199) +..--+....+|... .||+ +.-. .++ ..|.+.|.+. T Consensus 424 RIGRTGR~Gn~G~at-----sf~n---~~~~---~i~-~~L~~~l~ea 459 (482) T KOG0335 424 RIGRTGRVGNGGRAT-----SFFN---EKNQ---NIA-KALVEILTEA 459 (482) T ss_pred HCCCCCCCCCCCEEE-----EEEC---CCCC---HHH-HHHHHHHHHH T ss_conf 415435577773268-----8764---7430---068-9999999984 No 66 >cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model. Probab=26.02 E-value=55 Score=14.74 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=21.8 Q ss_pred CCCCHHHHHHHHHCCCCCEEECCCCCCC Q ss_conf 2699899999997898859975898843 Q gi|254780813|r 8 ASSSLSRRKLLQNSGIQFSVVKPNIDER 35 (199) Q Consensus 8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~ 35 (199) ++++..-.+||+.+|+++..+-.+.|.. T Consensus 122 G~~~~~~~~ll~~lg~~v~~ln~~~dg~ 149 (355) T cd03084 122 GVGGPIAPQLLEKLGAEVIPLNCEPDGN 149 (355) T ss_pred CCCCCHHHHHHHHCCCEEEEEEECCCCC T ss_conf 8551015999997298499952115888 No 67 >PRK00784 cobyric acid synthase; Provisional Probab=25.83 E-value=39 Score=15.71 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=27.3 Q ss_pred HHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHEECCCCCCCCCCCHH Q ss_conf 578999996206886733210000122332100011897532227699 Q gi|254780813|r 139 EEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVGLPII 186 (199) Q Consensus 139 ~~~I~~Yi~~~~~~~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~ 186 (199) ++.|..|.++. .-.++-||||++=|....==..+||+...+-||-+. T Consensus 317 ~~~i~~~~~~G-~~V~GICGGyQMLG~~I~DP~gvE~~~~~~~GLGLL 363 (492) T PRK00784 317 DEAIRAHARRG-GPVLGICGGYQMLGRTIADPDGVEGAPGEVEGLGLL 363 (492) T ss_pred HHHHHHHHHCC-CCEEEECCHHHHHCCEECCCCCCCCCCCCCCCCCCE T ss_conf 99999999759-978998702886302003865666787754652313 No 68 >cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases. Probab=24.58 E-value=29 Score=16.46 Aligned_cols=16 Identities=31% Similarity=0.202 Sum_probs=10.2 Q ss_pred HHHHHHHHCCCCCEEE Q ss_conf 9999999789885997 Q gi|254780813|r 13 SRRKLLQNSGIQFSVV 28 (199) Q Consensus 13 ~R~~lL~~~gi~f~~~ 28 (199) .|-..|...|+.+.++ T Consensus 61 ~ri~~Ll~~~I~PifV 76 (316) T cd00128 61 YRTCRLLELGIKPVFV 76 (316) T ss_pred HHHHHHHHCCCEEEEE T ss_conf 9999999779959999 No 69 >COG1926 Predicted phosphoribosyltransferases [General function prediction only] Probab=24.48 E-value=28 Score=16.56 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=39.9 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHC Q ss_conf 12344676100134699999851980378886653037861004687411001222057899999620 Q gi|254780813|r 82 LGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKI 149 (199) Q Consensus 82 ~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~ 149 (199) +..-++-=|..+++|.+.|..+--+- +|+..+.. +..++..--.|+.+||+|+.+|+.+. T Consensus 152 ~~~IviAVPV~p~~a~~~l~s~~D~v------vc~~~P~~--F~AVg~~Y~dF~q~sdeEV~~lL~~a 211 (220) T COG1926 152 PKEIVIAVPVAPEDAAAELESEADEV------VCLYMPAP--FEAVGEFYRDFRQVSDEEVRALLRRA 211 (220) T ss_pred CCEEEEECCCCCHHHHHHHHHHCCEE------EEECCCCC--HHHHHHHHHHHHHCCHHHHHHHHHHC T ss_conf 86089984459789999998546759------99827854--89999999777653899999999851 No 70 >TIGR02724 phenyl_P_beta phenylphosphate carboxylase, beta subunit; InterPro: IPR014096 Members of this protein family are the beta subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This beta subunit is homologous to the alpha subunit and, more broadly, to UbiD family decarboxylases.. Probab=24.29 E-value=32 Score=16.21 Aligned_cols=30 Identities=23% Similarity=0.589 Sum_probs=17.1 Q ss_pred HHCCCCCCCEECHHHHHCCCCCCCCCCCHH Q ss_conf 101377540341344310123446761001 Q gi|254780813|r 64 VSNRYPESFVIGCDQTMSLGSSIYHKPVDM 93 (199) Q Consensus 64 v~~~~~~~~VI~aDtvv~~~g~i~~KP~~~ 93 (199) .-++.|.+-|||||-++...|..++|-.+. T Consensus 187 ~GkkmPaaaiiGCdPlifm~GtlmhkGasd 216 (472) T TIGR02724 187 LGKKMPAAAIIGCDPLIFMAGTLMHKGASD 216 (472) T ss_pred HCCCCCCCEEECCCHHHHHHHHHHHCCCCC T ss_conf 313365200122651444300233056654 No 71 >COG1049 AcnB Aconitase B [Energy production and conversion] Probab=24.13 E-value=55 Score=14.76 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=57.4 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCC-CEEEEEEEEECCCC------CCCEE--EEEEEEEECCCCCHHHHHHHHHHCCCC Q ss_conf 1234467610013469999985198-03788866530378------61004--687411001222057899999620688 Q gi|254780813|r 82 LGSSIYHKPVDMLEAEKNLLRISGK-KHRISSAYVLVQNG------KVLRH--HISVAQLTMYKLSEEFIKFYLNKIGKK 152 (199) Q Consensus 82 ~~g~i~~KP~~~~eA~~~L~~lsg~-~h~v~T~~~i~~~~------~~~~~--~~~~t~v~f~~l~~~~I~~Yi~~~~~~ 152 (199) .+--|+--|.|+++++.+- .-.|. -+.|+-|-|+.+-+ +.+.. .-..++++..+-+.-+++...+...|. T Consensus 668 IkEPila~PNdpDd~r~ls-e~~~~~idevFiGSCMtniGh~ra~~klL~~~~~~~~~rLwvapPTkmd~~qL~~EG~y~ 746 (852) T COG1049 668 IKEPILAAPNDPDDVRLLS-EVAGDKIDEVFIGSCMTNIGHFRAAGKLLENAKGELPTRLWVAPPTKMDAAQLTEEGYYS 746 (852) T ss_pred CCCCEECCCCCCHHHHHHH-HHCCCCCCEEEEEHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHCCHHH T ss_conf 1787542899902766667-751773311344101125214999999996076677764596488623499986530688 Q ss_pred CCCCCCEECCCCCHHHH Q ss_conf 67332100001223321 Q gi|254780813|r 153 ALLSVGSYQIDKEGIQL 169 (199) Q Consensus 153 ~~~~aG~y~ie~~g~~~ 169 (199) .+.+||++ +|-.|..+ T Consensus 747 ifg~agar-~E~PGCsL 762 (852) T COG1049 747 IFGKAGAR-IEMPGCSL 762 (852) T ss_pred HHHHCCCE-ECCCCCCC T ss_conf 87631333-11787520 No 72 >pfam10288 DUF2392 Protein of unknown function (DUF2392). This is a family of proteins conserved from plants to humans. The function is not known. It carries a characteristic GRG sequence motif. Probab=23.97 E-value=37 Score=15.80 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=33.1 Q ss_pred CCCCCHHHHHHHHHHCCCCCCCC----------CCEECCCCCHHHHHHEECCCCCCCCC Q ss_conf 12220578999996206886733----------21000012233210001189753222 Q gi|254780813|r 134 MYKLSEEFIKFYLNKIGKKALLS----------VGSYQIDKEGIQLFSSIKGSYFSIVG 182 (199) Q Consensus 134 f~~l~~~~I~~Yi~~~~~~~~~~----------aG~y~ie~~g~~~i~~I~Gd~~~V~G 182 (199) +|++...||..|..-..-.++.. .---.|++....||..++.+|.+++- T Consensus 37 LRD~l~~Ei~~Y~~~~~l~~~~~~~~~~~~~~~~k~~SI~~L~~~f~~~Lq~~ypstvs 95 (104) T pfam10288 37 LRDLLLKEIEAYCSLKNLPPLLINSLITIASKLSKNMSINELTEQYFDNLQENYPSTVS 95 (104) T ss_pred HHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHH T ss_conf 58856999999999808740013555205430577788999999999988544842667 No 73 >TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family; InterPro: IPR011816 Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (IPR011813 from INTERPRO). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.; GO: 0008233 peptidase activity, 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic. Probab=23.71 E-value=32 Score=16.24 Aligned_cols=32 Identities=28% Similarity=0.631 Sum_probs=17.7 Q ss_pred CC-HHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHE Q ss_conf 20-5789999962068867332100001223321000 Q gi|254780813|r 137 LS-EEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSS 172 (199) Q Consensus 137 l~-~~~I~~Yi~~~~~~~~~~aG~y~ie~~g~~~i~~ 172 (199) +| ++-++.|++ +.+.-.|.|+||.-.-.+|.+ T Consensus 96 ~sK~~ILE~YLN----~iYfG~G~YG~~~AA~~YFgK 128 (700) T TIGR02074 96 LSKDEILELYLN----QIYFGNGAYGVEAAAQVYFGK 128 (700) T ss_pred CCHHHHHHHHHH----HHHHCCCCHHHHHHHHHHCCC T ss_conf 595799976302----421168841588999760697 No 74 >TIGR01761 thiaz-red thiazolinyl imide reductase; InterPro: IPR010091 This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclised to a thiazoline ring containing an imide double bond. Examples include yersiniabactin and pyochelin. Yersiniabactin is a virulence factor secreted by Yersinia pestis in iron-deficient microenvironments, in order to scavenge ferric ions . . Probab=23.59 E-value=62 Score=14.46 Aligned_cols=135 Identities=17% Similarity=0.243 Sum_probs=63.9 Q ss_pred EECCCCHHHHHHHHHCCCCC----EEECCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHH Q ss_conf 74269989999999789885----99758988432--4220134457998999888765433321013775403413443 Q gi|254780813|r 6 ILASSSLSRRKLLQNSGIQF----SVVKPNIDERE--MEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQT 79 (199) Q Consensus 6 ILAS~S~~R~~lL~~~gi~f----~~~~~~iDE~~--~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtv 79 (199) |||-+|.|=|+|-+.+|++. +.+|-++|=-= +.... .+.+-.+++.. ..++.= T Consensus 43 lLAqGS~RSR~LA~~lGvpLy~~ve~lp~~~~~ACvvvRSa~---~Gg~G~~LA~a--------LL~RGi---------- 101 (378) T TIGR01761 43 LLAQGSERSRALAHRLGVPLYSEVEELPDDIDIACVVVRSAI---VGGKGSELARA--------LLKRGI---------- 101 (378) T ss_pred EEHHCCHHHHHHHHHHCCCCCCCHHHCCCCCCEEEEEEEEEE---ECCCCHHHHHH--------HHHCCC---------- T ss_conf 100103689999998098410671004688755588852253---17972589999--------985675---------- Q ss_pred HCCCCCCCCCCCHHHHHHHHH--HHHCCCCEEEEEEE----EE---CC--------CCCCCEEEEE---EEEEECCCCCH Q ss_conf 101234467610013469999--98519803788866----53---03--------7861004687---41100122205 Q gi|254780813|r 80 MSLGSSIYHKPVDMLEAEKNL--LRISGKKHRISSAY----VL---VQ--------NGKVLRHHIS---VAQLTMYKLSE 139 (199) Q Consensus 80 v~~~g~i~~KP~~~~eA~~~L--~~lsg~~h~v~T~~----~i---~~--------~~~~~~~~~~---~t~v~f~~l~~ 139 (199) ..+.|-|--.+|-.+.+ -.-.|+...|.|=. ++ +. ..+.+ .+++ .-+|-|..| T Consensus 102 ----~VLqEHPl~p~d~~~L~~lA~~~Gr~Y~vNTFYPh~PAv~~Fi~~~~q~rr~~~~~p-~~v~at~g~Ql~ys~L-- 174 (378) T TIGR01761 102 ----HVLQEHPLHPEDIAELLRLAERQGRRYLVNTFYPHLPAVRRFIEYARQLRRAARKKP-AFVEATTGVQLLYSTL-- 174 (378) T ss_pred ----EEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC-CEEEEHHHHHHHHHHH-- T ss_conf ----156328988778999999999709866420677873378999999999999974789-7898400268999999-- Q ss_pred HHHHHHHHHCCCCCCCCCCEECCCCCH-HHHH Q ss_conf 789999962068867332100001223-3210 Q gi|254780813|r 140 EFIKFYLNKIGKKALLSVGSYQIDKEG-IQLF 170 (199) Q Consensus 140 ~~I~~Yi~~~~~~~~~~aG~y~ie~~g-~~~i 170 (199) |-|-.-+. ..-.+.|+|.|.+|..+ ..+- T Consensus 175 D~~~~~Lg--G~GtfaC~~p~~l~~~~~~~~~ 204 (378) T TIGR01761 175 DILARALG--GEGTFACVGPLSLESASVGDLS 204 (378) T ss_pred HHHHHHHC--CCCCEEECCCCCCCCCCCCCHH T ss_conf 99999847--8841442155111336677502 No 75 >pfam01755 Glyco_transf_25 Glycosyltransferase family 25 (LPS biosynthesis protein). Members of this family belong to Glycosyltransferase family 25 This is a family of glycosyltransferases involved in lipopolysaccharide (LPS) biosynthesis. These enzymes catalyse the transfer of various sugars onto the growing LPS chain during its biosynthesis. Probab=23.44 E-value=62 Score=14.44 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=38.4 Q ss_pred ECCCCHHHHHHHH---HCCCCCEEECC----CCCCCCCCCCC-------CCCCCCCHHHHHHHHHHHHH-HHHHCCC-CC Q ss_conf 4269989999999---78988599758----98843242201-------34457998999888765433-3210137-75 Q gi|254780813|r 7 LASSSLSRRKLLQ---NSGIQFSVVKP----NIDEREMEKKM-------DFSERKRPEKIALILAEKKA-LEVSNRY-PE 70 (199) Q Consensus 7 LAS~S~~R~~lL~---~~gi~f~~~~~----~iDE~~~~~~~-------~~~~~~~p~~~~~~lA~~Ka-~~v~~~~-~~ 70 (199) |....-||..+.+ ++|++|+.+.+ ..|........ ......++.++++.++..++ +.+.+.. +- T Consensus 9 L~r~~~Rr~~~~~~l~~~~i~~~~~~Avdg~~l~~~~~~~~~~~~~~~~~~~r~lt~gEiGC~lSH~~~w~~~v~~~~~~ 88 (200) T pfam01755 9 LKRATERREHIQKEFGKLNIPFQFFDAIDGKELPNHLLFKLYNFLLRSKYAGRPLTLGEIGCFLSHYSLWQKCVELNLEY 88 (200) T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 99958999999999987699769998463101022678873255553346789888445148999999999999759984 Q ss_pred CCEEC Q ss_conf 40341 Q gi|254780813|r 71 SFVIG 75 (199) Q Consensus 71 ~~VI~ 75 (199) .+|+= T Consensus 89 alIlE 93 (200) T pfam01755 89 IIILE 93 (200) T ss_pred EEEEC T ss_conf 99981 No 76 >PRK09722 allulose-6-phosphate 3-epimerase; Provisional Probab=22.65 E-value=35 Score=15.99 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=7.4 Q ss_pred CHHHHHHHHHHHHHHH Q ss_conf 9899988876543332 Q gi|254780813|r 48 RPEKIALILAEKKALE 63 (199) Q Consensus 48 ~p~~~~~~lA~~Ka~~ 63 (199) .|..+....+...+.- T Consensus 68 ~P~~~i~~~~~~gad~ 83 (227) T PRK09722 68 RPQDYIAQLADAGADF 83 (227) T ss_pred CHHHHHHHHHHCCCCE T ss_conf 8888899998549989 No 77 >cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Probab=22.64 E-value=64 Score=14.34 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=19.5 Q ss_pred CCCHHHHHH-HHHCCCCCEEECCCCCCC Q ss_conf 699899999-997898859975898843 Q gi|254780813|r 9 SSSLSRRKL-LQNSGIQFSVVKPNIDER 35 (199) Q Consensus 9 S~S~~R~~l-L~~~gi~f~~~~~~iDE~ 35 (199) |+-.-|.-| |+.+|++|+.+.-+++.. T Consensus 10 SswSlR~~l~L~e~glpfe~~~v~l~~~ 37 (73) T cd03043 10 SSWSLRPWLLLKAAGIPFEEILVPLYTP 37 (73) T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 6189999999998699857999789991 No 78 >TIGR00011 YbaK_EbsC ybaK/ebsC protein; InterPro: IPR004369 The family includes P36922 from SWISSPROT, a protein which affects the expression of a receptor called binding substance, that mediates mating aggregate formation in Enterococcus faecalis . It was suggested that this may be a regulatory protein that suppresses the function or expression of ebsA and/or ebsMB. A crystallographic study of another member of this family, P45202 from SWISSPROT from Haemophilus influenzae, (HI1434, YbaK) suggests that these proteins could be involved in nucleotide or oligonucleotide binding .; GO: 0006355 regulation of transcription DNA-dependent. Probab=22.10 E-value=66 Score=14.27 Aligned_cols=78 Identities=23% Similarity=0.239 Sum_probs=41.5 Q ss_pred HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCCCCCCHHHH Q ss_conf 99997898859975898843242201344579989998887654333210137754034134431012344676100134 Q gi|254780813|r 16 KLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLE 95 (199) Q Consensus 16 ~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~~KP~~~~e 95 (199) .+|++.||+|++..-+.||+... .-.+.|..+ ..+...-|+ .||+..|.-- -+--+.==|.|++= T Consensus 5 r~L~~~kI~y~~~~Y~~d~~~~~---------~g~~~A~~l----G~~~~~VfK-TLv~~~~~~~-~p~~VaviP~~~~L 69 (156) T TIGR00011 5 RLLDKAKIEYEVHEYEVDPDHDL---------DGESAAEKL----GVDPERVFK-TLVAEGDKKG-KPLVVAVIPVDEEL 69 (156) T ss_pred HHHHHCCCCEEEECCCCCCCCCH---------HHHHHHHHH----CCCCCEEEE-EEEEEECCCC-CCEEEEEEECCCCC T ss_conf 88996199568721356998861---------589999982----998110688-8899607899-97179997158621 Q ss_pred HHHHHHHHCCCCE Q ss_conf 6999998519803 Q gi|254780813|r 96 AEKNLLRISGKKH 108 (199) Q Consensus 96 A~~~L~~lsg~~h 108 (199) =.+.|-+.+|.++ T Consensus 70 ~lK~lAka~G~KK 82 (156) T TIGR00011 70 DLKKLAKASGGKK 82 (156) T ss_pred CHHHHHHHHCCCC T ss_conf 8789998808984 No 79 >TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC.. Probab=22.03 E-value=58 Score=14.61 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=38.9 Q ss_pred CCCCCHHHHHHHHHHHHCCCC---EEEEEEEEECCCCC---CCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCC---- Q ss_conf 676100134699999851980---37888665303786---10046874110012220578999996206886733---- Q gi|254780813|r 87 YHKPVDMLEAEKNLLRISGKK---HRISSAYVLVQNGK---VLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLS---- 156 (199) Q Consensus 87 ~~KP~~~~eA~~~L~~lsg~~---h~v~T~~~i~~~~~---~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~---- 156 (199) |.=|.|+ .-=+.+|.|..+. =+|.=|.+-..++. -+++. +|+|+|.+|+.++|..-|..-.+ -++. T Consensus 301 YYDpdD~-NvPkYIK~lFe~GAPADFvLIGATTr~P~eINpALRSR--CaEvfFePL~p~dI~~Iv~~AA~-klnv~L~~ 376 (616) T TIGR02903 301 YYDPDDE-NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSR--CAEVFFEPLTPEDIKEIVLNAAE-KLNVKLAE 376 (616) T ss_pred CCCCCCC-CCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCHHHHCC--CCEEECCCCCHHHHHHHHHHHHH-HCCCCCCC T ss_conf 2487537-86558888522688825687266158824405123301--43132179887899999999888-61770003 Q ss_pred -----CCEECCCCC Q ss_conf -----210000122 Q gi|254780813|r 157 -----VGSYQIDKE 165 (199) Q Consensus 157 -----aG~y~ie~~ 165 (199) -..|.|||. T Consensus 377 gV~e~Ia~YTieGR 390 (616) T TIGR02903 377 GVEELIARYTIEGR 390 (616) T ss_pred CHHHHHHHCCCCCH T ss_conf 64878721471311 No 80 >TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain; InterPro: IPR011947 This entry represents the phosphatase domain of the human RNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3 . This domain is related to domains found in the human NLI interacting factor-like phosphatases. ; GO: 0004721 phosphoprotein phosphatase activity, 0005634 nucleus. Probab=21.16 E-value=45 Score=15.29 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=37.8 Q ss_pred CCCCCCCCCCCHHHHHHHH--HHHHCC-CCEEEEEEEEECCCCCCCEEEEEEEEE Q ss_conf 0123446761001346999--998519-803788866530378610046874110 Q gi|254780813|r 81 SLGSSIYHKPVDMLEAEKN--LLRISG-KKHRISSAYVLVQNGKVLRHHISVAQL 132 (199) Q Consensus 81 ~~~g~i~~KP~~~~eA~~~--L~~lsg-~~h~v~T~~~i~~~~~~~~~~~~~t~v 132 (199) .|+++|+.+=.+..-..+. |..+-+ .-.. +|||+++..-+|.+...--| T Consensus 111 yFg~RiiSRdE~~~~~~K~~nL~~Lfpw~d~~---~VVIiDDr~~VW~~~k~NLI 162 (170) T TIGR02250 111 YFGDRIISRDESGSPHTKSKNLLRLFPWADES---MVVIIDDREDVWPKHKDNLI 162 (170) T ss_pred CCCCCEEECCCCCCCCCCHHHHHHHCCCCCCE---EEEEECCCHHHHCCCCCCCE T ss_conf 14882054157898762602277533301771---28998186573101412463 No 81 >TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport. Probab=20.86 E-value=70 Score=14.11 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=44.0 Q ss_pred CEEEEEEEEECCCCCCCEEEEEEEEEEC--CCCC-HHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHEECCCCCCCCC Q ss_conf 0378886653037861004687411001--2220-57899999620688673321000012233210001189753222 Q gi|254780813|r 107 KHRISSAYVLVQNGKVLRHHISVAQLTM--YKLS-EEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVG 182 (199) Q Consensus 107 ~h~v~T~~~i~~~~~~~~~~~~~t~v~f--~~l~-~~~I~~Yi~~~~~~~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~G 182 (199) -|++|+-|+++.-+..+++....-.+.+ ++.+ +++|.+--. .|++ ..||...+-+|+|.+| T Consensus 602 H~YLH~~V~~VgQEPvLf~gSvr~NIaYGL~~~~T~~~~~aaA~--------~a~a-------hdFI~~~~~gydT~vG 665 (770) T TIGR00958 602 HHYLHRQVALVGQEPVLFSGSVRENIAYGLTKTPTDEEVTAAAK--------AANA-------HDFISELPNGYDTEVG 665 (770) T ss_pred CEECCCEEEEEECCCEECCCCHHHHHHHCCCCCCCHHHHHHHHH--------HHCC-------CCCCCCCCCCCCCCCC T ss_conf 50100025433205430246316656516899982789999998--------6137-------6443578898675408 No 82 >TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366 This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process. Probab=20.27 E-value=70 Score=14.10 Aligned_cols=64 Identities=9% Similarity=0.079 Sum_probs=29.3 Q ss_pred CCCEECHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHH Q ss_conf 54034134431012344676100134699999851980378886653037861004687411001222057899 Q gi|254780813|r 70 ESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIK 143 (199) Q Consensus 70 ~~~VI~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~ 143 (199) +.+.-..||+|.+-|. .+..++.+.|=-..-.--|-++++.++....+..-.+ +..++.+...+ T Consensus 159 ~~lA~~~~Tlv~yMG~--------~~l~~I~~~Li~~G~~~~tPvA~v~~At~~~Q~~~~~--tL~~~~~~~~~ 222 (242) T TIGR01469 159 EALAKGGGTLVIYMGV--------ANLAEIAKELIEAGRDPDTPVAVVEWATTPNQRVVIG--TLGDLAEKAAE 222 (242) T ss_pred HHCCCCCCCEEEEHHH--------HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEE--EHHHHHHHHHH T ss_conf 6715767726886217--------8899999999963889678274443288512025565--38889999997 No 83 >PRK03980 flap endonuclease-1; Provisional Probab=20.10 E-value=50 Score=15.04 Aligned_cols=12 Identities=42% Similarity=0.576 Sum_probs=4.9 Q ss_pred HHHHHCCCCCEE Q ss_conf 999978988599 Q gi|254780813|r 16 KLLQNSGIQFSV 27 (199) Q Consensus 16 ~lL~~~gi~f~~ 27 (199) +||+.+|+++.. T Consensus 90 ~LL~~~Gipyi~ 101 (295) T PRK03980 90 KLLDLMGIPYVQ 101 (295) T ss_pred HHHHHCCCCCCC T ss_conf 999986987121 Done!