Query         gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 199
No_of_seqs    107 out of 3404
Neff          6.6 
Searched_HMMs 39220
Date          Sun May 29 18:06:04 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780813.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK02478 Maf-like protein; Rev 100.0       0       0  429.6  18.5  198    1-199     1-198 (199)
  2 COG0424 Maf Nucleotide-binding 100.0       0       0  411.7  17.2  189    1-198     1-190 (193)
  3 PRK00148 Maf-like protein; Rev 100.0       0       0  408.8  17.7  187    2-197     1-188 (195)
  4 PRK04222 consensus             100.0       0       0  406.5  17.5  187    1-197     1-188 (191)
  5 PRK02676 consensus             100.0       0       0  405.4  17.9  188    1-197     1-190 (196)
  6 PRK03411 consensus             100.0       0       0  405.6  17.5  187    2-197     1-189 (194)
  7 PRK00884 Maf-like protein; Rev 100.0       0       0  404.7  17.6  187    2-197     1-189 (194)
  8 PRK00032 Maf-like protein; Rev 100.0       0       0  402.9  17.7  188    2-199     1-189 (189)
  9 PRK00234 Maf-like protein; Rev 100.0       0       0  402.5  17.8  187    2-197     1-189 (192)
 10 PRK04425 Maf-like protein; Rev 100.0       0       0  400.6  17.8  189    1-197     3-193 (196)
 11 PRK03442 consensus             100.0       0       0  399.8  17.8  192    2-197     1-201 (213)
 12 PRK00238 consensus             100.0       0       0  399.8  17.8  187    2-198     1-190 (198)
 13 PRK03415 consensus             100.0       0       0  399.3  17.7  187    2-198     1-188 (197)
 14 PRK01839 Maf-like protein; Rev 100.0       0       0  398.0  18.3  194    1-197     8-207 (209)
 15 PRK00648 Maf-like protein; Rev 100.0       0       0  393.5  17.5  188    1-197     1-189 (191)
 16 PRK02141 Maf-like protein; Rev 100.0       0       0  393.2  17.4  186    3-197     9-199 (206)
 17 PRK01441 Maf-like protein; Rev 100.0       0       0  391.0  17.8  186    3-197     5-197 (207)
 18 PRK03098 consensus             100.0       0       0  392.4  16.1  182    6-197     1-182 (185)
 19 PRK00078 Maf-like protein; Rev 100.0       0       0  391.3  17.0  187    3-197     1-190 (192)
 20 PRK04694 Maf-like protein; Rev 100.0       0       0  390.4  17.6  184    5-197     2-189 (190)
 21 pfam02545 Maf Maf-like protein 100.0       0       0  388.0  17.0  186    3-197     1-188 (193)
 22 PRK04719 consensus             100.0       0       0  387.0  17.2  184    2-195     3-187 (188)
 23 PRK01526 Maf-like protein; Rev 100.0       0       0  384.2  17.7  186    3-197     8-198 (205)
 24 cd00555 Maf Nucleotide binding 100.0       0       0  383.4  15.8  179    5-192     1-180 (180)
 25 PRK04056 Maf-like protein; Rev 100.0       0       0  378.5  15.8  178    5-192     2-180 (180)
 26 PRK03797 consensus             100.0       0       0  376.4  16.7  180    5-197     2-181 (186)
 27 PRK01946 consensus             100.0       0       0  366.9  17.0  183    3-195     9-194 (195)
 28 TIGR00172 maf septum formation 100.0       0       0  366.8  10.5  187    1-193     1-212 (212)
 29 KOG1509 consensus              100.0 6.2E-44       0  293.4  13.3  188    1-195     8-205 (209)
 30 cd00985 Maf_Ham1 Maf_Ham1. Maf 100.0 1.2E-29 3.1E-34  204.8  11.9  122    5-134     1-123 (131)
 31 PRK00120 putative deoxyribonuc  96.5   0.029 7.4E-07   35.1   8.6  114    1-126     1-135 (197)
 32 cd00515 HAM1 NTPase/HAM1.  Thi  95.3    0.18 4.5E-06   30.2   8.5  107    5-126     1-126 (183)
 33 COG0127 Xanthosine triphosphat  89.7     1.9 4.8E-05   23.8  10.5  113    2-124     1-130 (194)
 34 pfam01725 Ham1p_like Ham1 fami  86.4       3 7.8E-05   22.6   8.1  106    5-125     1-122 (181)
 35 TIGR01139 cysK cysteine syntha  85.8     2.2 5.5E-05   23.5   5.3  163    8-198    91-269 (312)
 36 TIGR00212 hemC porphobilinogen  77.7     2.1 5.4E-05   23.5   2.8  112    5-120   121-255 (312)
 37 COG0031 CysK Cysteine synthase  69.8     3.8 9.6E-05   22.0   2.4  155    8-198    94-261 (300)
 38 pfam01379 Porphobil_deam Porph  67.3     5.6 0.00014   20.9   2.9   61   16-76     21-93  (213)
 39 TIGR01136 cysKM cysteine synth  66.7      11 0.00027   19.2   4.3  147    8-183    94-251 (315)
 40 PRK01066 porphobilinogen deami  64.7     6.3 0.00016   20.6   2.7   59    4-62     20-91  (234)
 41 COG2425 Uncharacterized protei  60.5      14 0.00035   18.5   3.8   63   47-110   287-349 (437)
 42 COG1492 CobQ Cobyric acid synt  59.9     5.2 0.00013   21.1   1.6   48  139-187   315-362 (486)
 43 cd00494 HMBS Hydroxymethylbila  58.3     7.8  0.0002   20.0   2.3  112    4-121   117-251 (292)
 44 COG0181 HemC Porphobilinogen d  57.6     8.5 0.00022   19.8   2.4  113    5-123   121-256 (307)
 45 PRK02491 putative deoxyribonuc  57.0      18 0.00045   17.8   7.5  105    3-122   128-258 (328)
 46 PRK00072 hemC porphobilinogen   55.3      12  0.0003   18.9   2.8   32    5-36    122-155 (300)
 47 KOG1252 consensus               54.3     8.4 0.00021   19.8   1.9  137    8-173   136-276 (362)
 48 TIGR00313 cobQ cobyric acid sy  53.5     2.2 5.7E-05   23.4  -1.1   53  139-194   312-366 (502)
 49 cd04911 ACT_AKiii-YclM-BS_1 AC  51.5      11 0.00028   19.1   2.2   23   15-37     22-44  (76)
 50 cd06532 Glyco_transf_25 Glycos  49.7      23 0.00059   17.1   5.8   79    6-84      6-98  (128)
 51 TIGR01318 gltD_gamma_fam gluta  47.1      11 0.00027   19.2   1.5   97   12-112   197-299 (480)
 52 TIGR03297 Ppyr-DeCO2ase phosph  45.3      27 0.00069   16.7   5.8  141   14-192   107-264 (361)
 53 PHA01516 hypothetical protein   42.9       8 0.00021   19.9   0.4   17  170-186    42-58  (98)
 54 PRK04262 hypothetical protein;  41.7      31 0.00078   16.3   3.9   16   64-79    128-143 (346)
 55 TIGR01162 purE phosphoribosyla  34.6      39   0.001   15.7   4.6   44    5-61      3-51  (159)
 56 cd02064 Flavokinase_C Riboflav  33.9      41   0.001   15.6   4.1   76    7-107    53-128 (179)
 57 COG4285 Uncharacterized conser  33.8      41   0.001   15.6   4.3   85   90-182    13-111 (253)
 58 COG0041 PurE Phosphoribosylcar  33.5      41   0.001   15.5   3.2   43    4-59      6-53  (162)
 59 pfam03438 Pneumo_NS1 Pneumovir  30.7      32 0.00082   16.2   1.8   39  111-149    77-129 (136)
 60 COG4090 Uncharacterized protei  30.7      34 0.00085   16.1   1.9   41   75-118    85-126 (154)
 61 COG4186 Predicted phosphoester  28.7      40   0.001   15.6   2.0   40   73-112    42-81  (186)
 62 PRK07028 bifunctional hexulose  26.8      54  0.0014   14.8   3.4   81   12-102   121-208 (429)
 63 pfam00469 F-protein Negative f  26.5      54  0.0014   14.8   2.6   15   86-100    91-105 (220)
 64 PRK02910 light-independent pro  26.3      35  0.0009   16.0   1.4   10   49-58    137-146 (524)
 65 KOG0335 consensus               26.1      55  0.0014   14.8   4.3  106   74-195   348-459 (482)
 66 cd03084 phosphohexomutase The   26.0      55  0.0014   14.7   6.0   28    8-35    122-149 (355)
 67 PRK00784 cobyric acid synthase  25.8      39 0.00098   15.7   1.5   47  139-186   317-363 (492)
 68 cd00128 XPG Xeroderma pigmento  24.6      29 0.00074   16.5   0.7   16   13-28     61-76  (316)
 69 COG1926 Predicted phosphoribos  24.5      28 0.00072   16.6   0.6   60   82-149   152-211 (220)
 70 TIGR02724 phenyl_P_beta phenyl  24.3      32 0.00082   16.2   0.9   30   64-93    187-216 (472)
 71 COG1049 AcnB Aconitase B [Ener  24.1      55  0.0014   14.8   2.1   86   82-169   668-762 (852)
 72 pfam10288 DUF2392 Protein of u  24.0      37 0.00095   15.8   1.2   49  134-182    37-95  (104)
 73 TIGR02074 PBP_1a_fam penicilli  23.7      32 0.00081   16.2   0.8   32  137-172    96-128 (700)
 74 TIGR01761 thiaz-red thiazoliny  23.6      62  0.0016   14.5   2.3  135    6-170    43-204 (378)
 75 pfam01755 Glyco_transf_25 Glyc  23.4      62  0.0016   14.4   4.4   69    7-75      9-93  (200)
 76 PRK09722 allulose-6-phosphate   22.7      35 0.00089   16.0   0.8   16   48-63     68-83  (227)
 77 cd03043 GST_N_1 GST_N family,   22.6      64  0.0016   14.3   2.4   27    9-35     10-37  (73)
 78 TIGR00011 YbaK_EbsC ybaK/ebsC   22.1      66  0.0017   14.3   2.2   78   16-108     5-82  (156)
 79 TIGR02903 spore_lon_C ATP-depe  22.0      58  0.0015   14.6   1.8   75   87-165   301-390 (616)
 80 TIGR02250 FCP1_euk FCP1-like p  21.2      45  0.0012   15.3   1.1   49   81-132   111-162 (170)
 81 TIGR00958 3a01208 antigen pept  20.9      70  0.0018   14.1   2.2   61  107-182   602-665 (770)
 82 TIGR01469 cobA_cysG_Cterm urop  20.3      70  0.0018   14.1   2.0   64   70-143   159-222 (242)
 83 PRK03980 flap endonuclease-1;   20.1      50  0.0013   15.0   1.2   12   16-27     90-101 (295)

No 1  
>PRK02478 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=429.60  Aligned_cols=198  Identities=50%  Similarity=0.846  Sum_probs=190.5

Q ss_pred             CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHH
Q ss_conf             98754742699899999997898859975898843242201344579989998887654333210137754034134431
Q gi|254780813|r    1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTM   80 (199)
Q Consensus         1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv   80 (199)
                      |+++|||||+||||++||+++|++|+++||+|||++++.++. ....+|.+++.++|+.||.+++.++|+.+||||||||
T Consensus         1 mt~kiILAS~SprR~eLL~~~gi~f~v~~~diDE~~~~~~l~-~~~~~p~~~~~~lA~~Ka~~v~~~~~~~lVI~aDtvv   79 (199)
T PRK02478          1 MTVKLILASKSPFRRALLKNAGLEFSAAAADIDERAVEAPLE-ESGATPEDVALVLAEAKAIDVSEKFPGALVIGCDQTL   79 (199)
T ss_pred             CCCCEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEE
T ss_conf             998799737999999999978998099637999985545544-4799999999999999999999758998897378589


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             01234467610013469999985198037888665303786100468741100122205789999962068867332100
Q gi|254780813|r   81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY  160 (199)
Q Consensus        81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y  160 (199)
                      +++|+|+|||.|+++|++||+.|||++|+|+||+|++.+++.+|.++++|+|+|+++++++|++|+++.+++|++|||||
T Consensus        80 ~~~g~ilgKP~~~~eA~~mL~~lsGk~H~v~T~v~l~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yv~~~~~~~~~kAG~Y  159 (199)
T PRK02478         80 SLGDEVFHKPHDMEAARRHLQKLSGKTHQLNSAVVLVRDGKVLWRHVSIAHMTMRPLDAGFIGRHLARVGDKALSSVGAY  159 (199)
T ss_pred             EECCEECCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCEEEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             98999826964299999999997698399998999998998999999888998515999999999987499746541599


Q ss_pred             CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             001223321000118975322276999999999789899
Q gi|254780813|r  161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKVID  199 (199)
Q Consensus       161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gii~  199 (199)
                      +|||.|+.||++|+|||+||||||+.+|+++|++.|+||
T Consensus       160 ~Iqg~g~~~i~~I~Gd~~nVvGLPl~~l~~~L~e~~~~~  198 (199)
T PRK02478        160 QLEGEGIQLFEKIEGDYFTIVGLPLLPLLAKLRELKAID  198 (199)
T ss_pred             EECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             771656764750389862145656999999999748958


No 2  
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=100.00  E-value=0  Score=411.71  Aligned_cols=189  Identities=35%  Similarity=0.561  Sum_probs=181.5

Q ss_pred             CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCEECHHHH
Q ss_conf             987547426998999999978988599758988432422013445799899988876543332101377-5403413443
Q gi|254780813|r    1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYP-ESFVIGCDQT   79 (199)
Q Consensus         1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~-~~~VI~aDtv   79 (199)
                      ||+++||||+||||++||+++|++|++++|+|||+..+.+       .|.+++.+||+.||++++..++ +.+|||||||
T Consensus         1 ~~~~LiLAS~SPrR~elL~~~gi~f~~~~~~iDE~~~~~~-------~P~~~v~~LA~~KA~~va~~~~~~~~VigaDtv   73 (193)
T COG0424           1 MMPRLILASSSPRRRELLEQLGIPFEVIPSDIDEPLLKAE-------EPREYVLRLAEEKARAVAARLPPDALVIGADTV   73 (193)
T ss_pred             CCCCEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCC-------CHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEE
T ss_conf             9862899469989999999879981980689998766578-------979999999999999999847999879962749


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCE
Q ss_conf             10123446761001346999998519803788866530378610046874110012220578999996206886733210
Q gi|254780813|r   80 MSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGS  159 (199)
Q Consensus        80 v~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~  159 (199)
                      |+++|+|+|||.|.++|++||+.+||++|+|+||+|++++++.+|.++++|+|+|+++++++|++|+++  ++|++||||
T Consensus        74 v~ldgrilgKP~~~~eA~~~L~~lSG~~h~v~T~v~li~~~~~~~~~~~~t~V~F~~ls~~~I~~Yv~s--gepl~kAGa  151 (193)
T COG0424          74 VVLDGRILGKPKDEEEAREMLRKLSGRTHQVYTGVALIDPGKRVQSEVEVTKVRFRTLSDEEIEAYVAS--GEPLDKAGA  151 (193)
T ss_pred             EEECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCCE
T ss_conf             998999826999999999999984698699999999997797389999978999755999999999974--996023524


Q ss_pred             ECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             000122332100011897532227699999999978989
Q gi|254780813|r  160 YQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKVI  198 (199)
Q Consensus       160 y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gii  198 (199)
                      |+|||.|+.||++|+|||+||||||+.++.++|+++|+.
T Consensus       152 y~iqG~G~~fie~IeGdy~~vvGLPL~~l~~~L~~~g~~  190 (193)
T COG0424         152 YGIQGLGGLFIEKIEGDYSNVVGLPLPELVQLLRELGFS  190 (193)
T ss_pred             EEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             774036022798755475430076689999999974997


No 3  
>PRK00148 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=408.81  Aligned_cols=187  Identities=25%  Similarity=0.361  Sum_probs=179.3

Q ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHC
Q ss_conf             87547426998999999978988599758988432422013445799899988876543332101377540341344310
Q gi|254780813|r    2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMS   81 (199)
Q Consensus         2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~   81 (199)
                      |++|||||+||||++||+++|++|+++||+|||++.+.       ..|.+++.++|+.||++++.++|+.+||||||||+
T Consensus         1 M~klILAS~Sp~R~~lL~~~g~~f~v~~~~idE~~~~~-------~~p~~~v~~lA~~KA~~v~~~~~~~iVI~aDtvv~   73 (195)
T PRK00148          1 MTRLVLASASPARLKLLRLAGIPPLVVVSHVDEDAIAA-------SLPSELVQALALAKAEAVAEVAPDAVVLGCDSMLL   73 (195)
T ss_pred             CCCEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf             99789857999999999977998499789989898877-------89999999999999999998789977996435999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             1234467610013469999985198037888665303-786100468741100122205789999962068867332100
Q gi|254780813|r   82 LGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQ-NGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY  160 (199)
Q Consensus        82 ~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~-~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y  160 (199)
                      ++|+|+|||.|.++|++||+.|||++|+||||+|++. +++.+|.++++|+|+|+++++++|++||++  ++|++|||||
T Consensus        74 ~~g~i~gKP~~~~eA~~~L~~lsgk~H~v~Tgv~v~~~~~~~~~~~~~~t~V~f~~ls~~~I~~Yv~~--~~~~~kAG~y  151 (195)
T PRK00148         74 IDGRLLGKPHTPEEAIERWQQMRGRTGELYTGHALIDLDQNVTFVEYERTEVHFAELSDEEIEAYVAT--GEPLDCAGAF  151 (195)
T ss_pred             ECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCEEE
T ss_conf             89998359999999999999866997499988999988998899999989999946999999999960--9986730387


Q ss_pred             CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             0012233210001189753222769999999997898
Q gi|254780813|r  161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      +|||.|..||++|+|||+||||||+.+|.++|+++|+
T Consensus       152 ~ieg~g~~~i~~I~G~~~nV~GLPl~~l~~~L~~~G~  188 (195)
T PRK00148        152 TLEGLGGWFVDKIEGDPSNVIGLSLPLLRRLLKRFGY  188 (195)
T ss_pred             EECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             6535854336543888300308889999999998599


No 4  
>PRK04222 consensus
Probab=100.00  E-value=0  Score=406.49  Aligned_cols=187  Identities=32%  Similarity=0.528  Sum_probs=178.3

Q ss_pred             CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHH
Q ss_conf             98754742699899999997898859975898843242201344579989998887654333210137754034134431
Q gi|254780813|r    1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTM   80 (199)
Q Consensus         1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv   80 (199)
                      ||++|||||+||||++||+++|++|++++|++||++++.       .+|.+++.++|..||++++.++|+.+||||||||
T Consensus         1 mm~kiILAS~SprR~~lL~~~gi~F~~~~~~iDE~~~~~-------~~p~~~~~~lA~~KA~~v~~~~~~~~VIgaDtvv   73 (191)
T PRK04222          1 MMPRLILASTSAYRRELLGRLQLDFDTARPEVDEQALPG-------ETPSALASRLAGEKAAAVAVRFPEAWVIGSDQVA   73 (191)
T ss_pred             CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEE
T ss_conf             998789847999999999978998099789999887899-------9999999999999989889768986697145699


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             01234467610013469999985198037888665303786100468741100122205789999962068867332100
Q gi|254780813|r   81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY  160 (199)
Q Consensus        81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y  160 (199)
                      +++|++||||.|.++|++||+.|||++|+|+||+|++.+++. ++++++|+|+|+++++++|++|+++  ++|++|||||
T Consensus        74 ~~~g~ilgKP~~~~eA~~~L~~LsGk~h~v~T~v~v~~~~~~-~~~~~~t~v~fr~ls~~~I~~Yl~~--~~~~~kAG~Y  150 (191)
T PRK04222         74 DLDGQALGKPGTLEQARAQLTAMSGRTVRFHTAVSLIGPERA-LHALDLTEVQLRALTPQEIERYLDA--EPALDCAGSF  150 (191)
T ss_pred             EECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCC-EEEEEEEEEEEECCCHHHHHHHHHC--CCCCCCCEEE
T ss_conf             989999479999999999999858997999999999968986-8999999999944999999999814--9821430589


Q ss_pred             CCCCCHHHHHHEECC-CCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             001223321000118-9753222769999999997898
Q gi|254780813|r  161 QIDKEGIQLFSSIKG-SYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       161 ~ie~~g~~~i~~I~G-d~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      +|||.|..||++|+| ||+||||||+.+|.++|+++|+
T Consensus       151 ~ieg~g~~l~~~I~g~d~~~VvGLPl~~l~~~L~~~G~  188 (191)
T PRK04222        151 KCEGLGISLFDAIRSNDPTALVGLPLIALARLLRQAGF  188 (191)
T ss_pred             EEECCCHHEEEEEECCCCCEEECCCHHHHHHHHHHCCC
T ss_conf             88126012389875379985774889999999998599


No 5  
>PRK02676 consensus
Probab=100.00  E-value=0  Score=405.41  Aligned_cols=188  Identities=26%  Similarity=0.418  Sum_probs=177.9

Q ss_pred             CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCEECHHHH
Q ss_conf             987547426998999999978988599758988432422013445799899988876543332101-3775403413443
Q gi|254780813|r    1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSN-RYPESFVIGCDQT   79 (199)
Q Consensus         1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~-~~~~~~VI~aDtv   79 (199)
                      |+++|||||+||||++||+++|++|+++||++||++++.       .+|.+++.++|+.||++++. .+++.+|||||||
T Consensus         1 m~~~iILAS~SprR~~lL~~~g~~f~v~~~~idE~~~~~-------~~p~~~~~~lA~~KA~~va~~~~~~~~VI~aDTv   73 (196)
T PRK02676          1 MTPPFILASASPARRRLLQTVGIDPIVQPSHFDESQIQA-------TDPVALVQTLAQAKAETVAASQFEPALVLGCDSV   73 (196)
T ss_pred             CCCCEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEE
T ss_conf             999999947999999999977998399789999888776-------8999999999999999998744899799990879


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             101234467610013469999985198037888665303-7861004687411001222057899999620688673321
Q gi|254780813|r   80 MSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQ-NGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVG  158 (199)
Q Consensus        80 v~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~-~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG  158 (199)
                      |+++|+|+|||.|+++|++||+.|||++|.|+||+|++. .++..+.++++|+|+|+++++++|++||++  ++|++|||
T Consensus        74 v~~~g~ilgKP~~~~eA~~~L~~lsGk~h~v~Tgv~li~~~~~~~~~~~~~t~V~f~~ls~~~I~~Yv~~--~~~~~kAG  151 (196)
T PRK02676         74 LAIGGEIYGKPASPAEAIARWQQMRGQVGELYTGHALIDLAQNRTLVRCGVTRVHFANVSDEEIRAYVAT--GEPLKCAG  151 (196)
T ss_pred             EEECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCE
T ss_conf             9989999789899999999998746996379888999988999799999989999888999999999954--99647416


Q ss_pred             EECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             000012233210001189753222769999999997898
Q gi|254780813|r  159 SYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       159 ~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      ||+|||.|..||++|+|||+||||||+.+|.++|+++|+
T Consensus       152 ~y~Iqg~g~~~i~~I~G~~~nVvGLPl~~l~~~L~~~G~  190 (196)
T PRK02676        152 CFALEGKGGLFIEKIEGCHSNVIGLSLPLLRQMLQELGY  190 (196)
T ss_pred             EEEECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             875523866464102998642147889999999998699


No 6  
>PRK03411 consensus
Probab=100.00  E-value=0  Score=405.58  Aligned_cols=187  Identities=32%  Similarity=0.500  Sum_probs=177.7

Q ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHC
Q ss_conf             87547426998999999978988599758988432422013445799899988876543332101377540341344310
Q gi|254780813|r    2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMS   81 (199)
Q Consensus         2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~   81 (199)
                      |++|||||+||||++||+++|++|++++|++||++.+.       .+|.+++.+||+.||++++.++|+.+||||||||+
T Consensus         1 M~~lILAS~SprR~~lL~~~gi~f~~~~~~iDE~~~~~-------~~p~~~v~~lA~~KA~~v~~~~~~~~VIgaDtvv~   73 (194)
T PRK03411          1 MPQLILASTSPWRRALLEKLQIPFECAAPEVDETPRSG-------ESPRQLVLRLAQAKAQSLASRYPQHLIIGSDQVCV   73 (194)
T ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEE
T ss_conf             99889878999999999878999689799999998999-------89999999999999999987589976654676999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCC-CCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             12344676100134699999851980378886653037-86100468741100122205789999962068867332100
Q gi|254780813|r   82 LGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQN-GKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY  160 (199)
Q Consensus        82 ~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~-~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y  160 (199)
                      ++|+|+|||.|+++|++||+.|||++|.|+||+|++.. +..+|..+++|+|+|+++++++|++||++  ++|++|||||
T Consensus        74 ~~g~il~KP~~~~eA~~~L~~lsGk~h~v~T~v~l~~~~~~~~~~~~~~t~V~fr~ls~~eI~~Yv~~--~e~~~kAG~Y  151 (194)
T PRK03411         74 LDGEITGKPLTEENARKQLRKASGNIVTFYTGLALFNSANGHLQTEVEPFDVHFRHLSEAEIDGYVRK--EHPLHCAGSF  151 (194)
T ss_pred             ECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCEEE
T ss_conf             89999768200999999999876981999989999988997899999996715037999999999955--9830472788


Q ss_pred             CCCCCHHHHHHEECC-CCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             001223321000118-9753222769999999997898
Q gi|254780813|r  161 QIDKEGIQLFSSIKG-SYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       161 ~ie~~g~~~i~~I~G-d~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      +|||.|..||++|+| ||+||||||+.+|+++|+++|+
T Consensus       152 ~ieg~g~~li~~I~G~~~~~VvGLPl~~l~~~L~~~G~  189 (194)
T PRK03411        152 KSEGLGITLFERLEGRDPNTLIGLPLIALCQMLRREGV  189 (194)
T ss_pred             EEECCHHHCEEEEEECCCCEEECCCHHHHHHHHHHCCC
T ss_conf             56127454274679358996241899999999998699


No 7  
>PRK00884 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=404.69  Aligned_cols=187  Identities=31%  Similarity=0.491  Sum_probs=177.1

Q ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHC
Q ss_conf             87547426998999999978988599758988432422013445799899988876543332101377540341344310
Q gi|254780813|r    2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMS   81 (199)
Q Consensus         2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~   81 (199)
                      |++|||||+||||++||+++|++|++++|++||++.+.       .+|.+++.++|+.||.+++.++|+.+||||||||+
T Consensus         1 M~~iILAS~SprR~~lL~~~gi~f~v~~~~idE~~~~~-------~~p~~~~~~lA~~KA~~v~~~~~~~~VigaDTvv~   73 (194)
T PRK00884          1 MPQLILASTSPYRRALLEKLQLPFECAAPEVDETPRPG-------ESPRQLVLRLAQEKAQSLASRYPDHLIIGSDQVCV   73 (194)
T ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEE
T ss_conf             99889978999999999878999589799999888889-------99999999999999998786589958984478999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCC-CCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             123446761001346999998519803788866530378-6100468741100122205789999962068867332100
Q gi|254780813|r   82 LGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG-KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY  160 (199)
Q Consensus        82 ~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~-~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y  160 (199)
                      +||+|||||.|+++|++||+.|||++|+|+||+|++.++ +.+|.++++|+|+|+++++++|++|+++  ++|++|||||
T Consensus        74 ~~g~i~~KP~~~~eA~~~L~~lsGk~h~v~Tgv~v~~~~~~~~~~~~~~t~V~f~~ls~~eI~~Yl~~--~e~~~kAG~Y  151 (194)
T PRK00884         74 LDGEITGKPLTEENARLQLRKASGNIVTFYTGLALFNSATGHLQTEVEPFDVHFRHLSEAEIDRYVRK--EHPLHCAGSF  151 (194)
T ss_pred             ECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCEEEE
T ss_conf             89998469799999999998757987999989999989997899999999999898999999999842--9985623687


Q ss_pred             CCCCCHHHHHHEECCC-CCCCCCCCHHHHHHHHHHCCC
Q ss_conf             0012233210001189-753222769999999997898
Q gi|254780813|r  161 QIDKEGIQLFSSIKGS-YFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       161 ~ie~~g~~~i~~I~Gd-~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      +|||.|..||++|+|| |+||||||+.+|+++|+++|+
T Consensus       152 ~ieg~g~~li~~I~G~~~~~VvGLPl~~l~~~L~~~G~  189 (194)
T PRK00884        152 KSEGLGITLFERLEGRDPNTLVGLPLIALCQMLRREGF  189 (194)
T ss_pred             EEECCHHHEEEEEEECCCCEEECCCHHHHHHHHHHCCC
T ss_conf             54058101099889058996673889999999998699


No 8  
>PRK00032 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=402.90  Aligned_cols=188  Identities=29%  Similarity=0.416  Sum_probs=177.5

Q ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCCCEECHHHHH
Q ss_conf             87547426998999999978988599758988432422013445799899988876543332-10137754034134431
Q gi|254780813|r    2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE-VSNRYPESFVIGCDQTM   80 (199)
Q Consensus         2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~-v~~~~~~~~VI~aDtvv   80 (199)
                      |++|||||+||||++||+++|++|+++||++||++.+.       .+|.+++.++|+.||++ ++...++.+||||||||
T Consensus         1 M~~lILAS~S~~R~~lL~~~gi~f~~~~~~idE~~~~~-------~~p~~~~~~lA~~KA~~~~~~~~~~~~VigaDtvv   73 (189)
T PRK00032          1 MTSLYLASGSPRRRELLAQLGVPFEVLVTGIEEQRQPQ-------ESAQQYVERLARDKAQAGVALVPQDLPVLGADTIV   73 (189)
T ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEE
T ss_conf             99889847999999999878998099739999888899-------99999999999998999997449997799547699


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             01234467610013469999985198037888665303786100468741100122205789999962068867332100
Q gi|254780813|r   81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY  160 (199)
Q Consensus        81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y  160 (199)
                      +++|+|+|||.|.++|++||+.|||++|+||||+|++.++ .++.++++|+|+|+++++++|++||++  ++|++|||||
T Consensus        74 ~~~g~i~~KP~~~~eA~~~L~~lsGk~h~v~T~v~v~~~~-~~~~~~~~t~v~fr~ls~~~I~~Yv~~--~~~~~kAG~y  150 (189)
T PRK00032         74 VLDGEVLEKPRDAADAAAMLAALSGRTHQVMTAVALADSQ-RILSCVVVTDVTFRTLSDEEIARYWAS--GEPLDKAGAY  150 (189)
T ss_pred             EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC-EEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCEEEEE
T ss_conf             9999997799999999999998589938999899999899-899999989999748999999999802--9987643475


Q ss_pred             CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             001223321000118975322276999999999789899
Q gi|254780813|r  161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKVID  199 (199)
Q Consensus       161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gii~  199 (199)
                      +|||.|..||++|+|||+||||||+.+|.++|+++||+-
T Consensus       151 ~ieg~g~~~i~~I~G~~~~V~GLPl~~l~~~L~~~Gvl~  189 (189)
T PRK00032        151 GIQGLGGCFVRKINGSYHAVVGLPLVETAELLSHFGALR  189 (189)
T ss_pred             EECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             315584333766798721001775999999999859989


No 9  
>PRK00234 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=402.45  Aligned_cols=187  Identities=30%  Similarity=0.452  Sum_probs=176.4

Q ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHC
Q ss_conf             87547426998999999978988599758988432422013445799899988876543332101377540341344310
Q gi|254780813|r    2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMS   81 (199)
Q Consensus         2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~   81 (199)
                      |++|||||+||||++||+++|++|++++|++||++.+.       .+|.+++.++|..||++++..+|+.+|||||||++
T Consensus         1 M~~iILAS~SprR~~lL~~~gi~f~v~~~~idE~~~~~-------~~p~~~~~~lA~~KA~~v~~~~~~~~VIgaDtvv~   73 (192)
T PRK00234          1 MPPLLLASSSPYRRELLARLRLPFTCASPDIDESHRPD-------ESAEELVRRLARQKAEALAGSHPQHLIIGSDQVAV   73 (192)
T ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEE
T ss_conf             99889868999999999977999499789998888999-------89999999999999986476489867873586999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCC-CCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             123446761001346999998519803788866530378-6100468741100122205789999962068867332100
Q gi|254780813|r   82 LGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG-KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY  160 (199)
Q Consensus        82 ~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~-~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y  160 (199)
                      ++|+|+|||.|+++|++||+.|||++|.|+||+|+++.. ..++..+.+|+|+|+++++++|++||++  ++|++|||||
T Consensus        74 ~~g~il~KP~~~~~A~~~L~~lsGk~h~v~Tgv~v~~~~~~~~~~~~~~t~v~f~~ls~~~I~~Yv~~--~e~~dkAG~Y  151 (192)
T PRK00234         74 LGEQILGKPHTFERACEQLLAASGQSVTFLTGLALLNSATGRCQVDCVPFTVHMRELDRARIERYVEA--EQPLDCAGSF  151 (192)
T ss_pred             ECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCEEE
T ss_conf             89999779999999999999828995999987999989996899999999999788999999999965--9961464772


Q ss_pred             CCCCCHHHHHHEECC-CCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             001223321000118-9753222769999999997898
Q gi|254780813|r  161 QIDKEGIQLFSSIKG-SYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       161 ~ie~~g~~~i~~I~G-d~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      +|||.|..||++|+| ||+||||||+.+|+++|+++|+
T Consensus       152 ~ieg~g~~li~~I~GsD~~nVvGLPl~~l~~~L~~~Gi  189 (192)
T PRK00234        152 KAEGLGVSLFRSTEGEDATSLIGLPLIRLVDMLLKEGV  189 (192)
T ss_pred             HHCCCHHHCEEEEECCCCCCEEECCHHHHHHHHHHCCC
T ss_conf             11248422487508489983433879999999998599


No 10 
>PRK04425 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=400.61  Aligned_cols=189  Identities=30%  Similarity=0.470  Sum_probs=177.6

Q ss_pred             CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHH
Q ss_conf             98754742699899999997898859975898843242201344579989998887654333210137754034134431
Q gi|254780813|r    1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTM   80 (199)
Q Consensus         1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv   80 (199)
                      |..+|||||+||||++||+++|++|+++||+|||++.+.       ..|.+++.++|+.||++++.++|+.+||||||||
T Consensus         3 ~~~~lILAS~SprR~~LL~~~gi~f~v~~~~idE~~~~~-------e~~~~~a~~lA~~KA~~v~~~~~~~iVIgaDtvv   75 (196)
T PRK04425          3 LELPLVLGTSSVFRREQMERLGIAFQAASPDFDETPMLG-------ESAPQTALRLAEGKARSLTGRFPEALIVGADQVA   75 (196)
T ss_pred             CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEE
T ss_conf             988799858999999999878999599769999899999-------9989999999999999999758997798148499


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCC-CCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCE
Q ss_conf             012344676100134699999851980378886653037-8610046874110012220578999996206886733210
Q gi|254780813|r   81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQN-GKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGS  159 (199)
Q Consensus        81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~-~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~  159 (199)
                      +++|+|+|||.|+++|++||+.|||++|+||||+|+++. ++.+|.++++|+|+|+++++++|++|+++ .+++++|||+
T Consensus        76 ~~~g~ilgKP~~~~eA~~~L~~LsGk~H~v~T~v~v~~~~~~~~~~~~~~t~v~f~~ls~~eI~~Yl~~-~~~~~~~aG~  154 (196)
T PRK04425         76 WCDGRQWGKPMNLANAQKMLMHLSGREIEFYSAVVLLNTVTGRMQRHIDKTVVVMRQLDELHILRYLER-EPDAVYCSCA  154 (196)
T ss_pred             EECCEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHC-CCCHHCCCEE
T ss_conf             999998589999999999999707992999999999988998599999999999937999999999967-9813224889


Q ss_pred             ECCCCCHHHHHHEECCCC-CCCCCCCHHHHHHHHHHCCC
Q ss_conf             000122332100011897-53222769999999997898
Q gi|254780813|r  160 YQIDKEGIQLFSSIKGSY-FSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       160 y~ie~~g~~~i~~I~Gd~-~~V~GLPi~~l~~~L~~~gi  197 (199)
                      |+|||.|+.||++|+||| ++|||||+.+|.++|+++|+
T Consensus       155 y~ieg~g~~li~~I~G~~~n~VvGLPl~~l~~~L~~~G~  193 (196)
T PRK04425        155 AKSEGLGALLIERIESTDPNALIGLPVFRLVDFLKNEGV  193 (196)
T ss_pred             EEHHHHHHHHEEEEECCCCCEEEECCHHHHHHHHHHCCC
T ss_conf             970221875164527369981551849999999998689


No 11 
>PRK03442 consensus
Probab=100.00  E-value=0  Score=399.79  Aligned_cols=192  Identities=21%  Similarity=0.368  Sum_probs=176.8

Q ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-----CCCEECH
Q ss_conf             87547426998999999978988599758988432422013445799899988876543332101377-----5403413
Q gi|254780813|r    2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYP-----ESFVIGC   76 (199)
Q Consensus         2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~-----~~~VI~a   76 (199)
                      |.+|||||+||||++||+++|++|++++|+|||++++...  ....+|.+++.+||..||.+++.+++     +.+||||
T Consensus         1 M~klILAS~SprR~~lL~~~g~~f~v~~~~iDE~~~~~~~--~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~d~lVi~a   78 (213)
T PRK03442          1 MTRLVLGSASPGRLKVLRQAGIDPLVVVSGVDEDAVIAAL--GPDAPPSDVVCALAAAKAAQVATALPREVAADCVVVGC   78 (213)
T ss_pred             CCCEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf             9848986899999999997799819974899987301124--78899999999999999999997573434789799968


Q ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC--CCCCCEEE--EEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             443101234467610013469999985198037888665303--78610046--87411001222057899999620688
Q gi|254780813|r   77 DQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQ--NGKVLRHH--ISVAQLTMYKLSEEFIKFYLNKIGKK  152 (199)
Q Consensus        77 Dtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~--~~~~~~~~--~~~t~v~f~~l~~~~I~~Yi~~~~~~  152 (199)
                      ||+|+++|+|||||.|+++|++||+.|||++|+|+||+|++.  ++...|..  +++|+|+|+++++++|++||++  ++
T Consensus        79 Dtiv~~~g~il~KP~~~~eA~~~L~~lsGk~h~v~Tgv~v~~~~~~~~~~~~~~~~~t~V~f~~ls~~eI~~Yv~~--~e  156 (213)
T PRK03442         79 DSMLYIDGRLCGKPGSPDAARAQWRSMAGRSGQLYTGHCVLRLRDGVIVHREVETAATTVHFGTPSEADLEAYLAS--GE  156 (213)
T ss_pred             CEEEEECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHC--CC
T ss_conf             9199989998379899899999999966996089999999991799188999999999999889999999999855--99


Q ss_pred             CCCCCCEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             673321000012233210001189753222769999999997898
Q gi|254780813|r  153 ALLSVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       153 ~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      |++|||||+|||.|+.||++|+|||+||||||+.++.++|+++|+
T Consensus       157 p~~kAG~Y~Iqg~g~~li~~I~Gd~~nVvGLPl~~l~~lL~~~G~  201 (213)
T PRK03442        157 PLHVAGGFTLDGLGGWFIDGVDGDPSNVIGLSLPLLRRLLQRVGL  201 (213)
T ss_pred             CCCCCEEEEECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             604445743410757506122887520245889999999998599


No 12 
>PRK00238 consensus
Probab=100.00  E-value=0  Score=399.77  Aligned_cols=187  Identities=28%  Similarity=0.403  Sum_probs=175.4

Q ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCCCEECHHH
Q ss_conf             87547426998999999978988599758988432422013445799899988876543332---101377540341344
Q gi|254780813|r    2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE---VSNRYPESFVIGCDQ   78 (199)
Q Consensus         2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~---v~~~~~~~~VI~aDt   78 (199)
                      |++|||||+||||++||+++|++|+++||++||++++.       .+|.+++.++|..||.+   +...+++.+||||||
T Consensus         1 M~~lILAS~Sp~R~~lL~~~gi~f~~~~~~iDE~~~~~-------~~p~~~~~~lA~~KA~a~~~~~~~~~~~lVIgaDt   73 (198)
T PRK00238          1 MPSLYLASGSPRRRELLTQIGVPFSVLSAPIDETPLPD-------ESPAAYVERLARGKAAAGLAMLGAEGPACVLGADT   73 (198)
T ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             99889838999999999878998299838999998888-------89999999999999999999865389968994481


Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             31012344676100134699999851980378886653037861004687411001222057899999620688673321
Q gi|254780813|r   79 TMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVG  158 (199)
Q Consensus        79 vv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG  158 (199)
                      ||+++|+++|||.|+++|++||+.|||++|+||||+|+..++ .++.++++|+|+|+++++++|++|+++  ++|++|||
T Consensus        74 vv~~~g~i~~KP~~~~eA~~~L~~lsGk~H~v~T~v~l~~~~-~~~~~~~~t~V~f~~ls~~eI~~Yi~~--~~p~~kAG  150 (198)
T PRK00238         74 AVVLDGRILGKPVDRADALAMLAALSGREHQVLTAVALADGQ-RVESRVVTSRVRFRPISPDEAQRYWAS--GEPADKAG  150 (198)
T ss_pred             EEEECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCC-EEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCEEE
T ss_conf             999899996899999999999997279955999999998299-799999989999646999999999954--99656207


Q ss_pred             EECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             0000122332100011897532227699999999978989
Q gi|254780813|r  159 SYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKVI  198 (199)
Q Consensus       159 ~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gii  198 (199)
                      ||+|||.|..||++|+|||+||||||+.+++++|+++||-
T Consensus       151 ~y~ie~~g~~li~~I~Gd~~~I~GLPl~~l~~~L~~~Gi~  190 (198)
T PRK00238        151 GYAIQGLGAVFVSGLEGSYSAVVGLPLCETAELLGHFGIP  190 (198)
T ss_pred             EEEECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             8865328565263107784115447899999999976998


No 13 
>PRK03415 consensus
Probab=100.00  E-value=0  Score=399.28  Aligned_cols=187  Identities=26%  Similarity=0.412  Sum_probs=174.4

Q ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCEECHHHHH
Q ss_conf             8754742699899999997898859975898843242201344579989998887654333210137-754034134431
Q gi|254780813|r    2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRY-PESFVIGCDQTM   80 (199)
Q Consensus         2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~-~~~~VI~aDtvv   80 (199)
                      |++|||||+||||++||+++|++|+++||++||++.+.       .+|.+++.++|+.||+++.... ++.+||||||||
T Consensus         1 M~~lILAS~S~~R~~lL~~~gi~f~vi~~~iDE~~~~~-------~~p~~~v~~lA~~KA~~v~~~~~~~~~VIgaDTvv   73 (197)
T PRK03415          1 MTSLYLASGSPRRQELLAQLGVTFERLVTGIEEQRQPQ-------ESAQQYVVRLAREKAQAGVAQAPQDLPVLGADTIV   73 (197)
T ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEE
T ss_conf             99889847999999999978999689768999998889-------99999999999999999985258998899868199


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             01234467610013469999985198037888665303786100468741100122205789999962068867332100
Q gi|254780813|r   81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY  160 (199)
Q Consensus        81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y  160 (199)
                      +++|+|+|||.|+++|++||+.|||++|.|+||+|+..+++ ++.++++|+|+|+++++++|++||++  ++|++|||||
T Consensus        74 ~~~g~il~KP~~~~eA~~~L~~lsG~~H~v~T~v~l~~~~~-~~~~~~~t~V~fr~ls~~eI~~Yv~~--~e~~~kAG~y  150 (197)
T PRK03415         74 VLNGEVLEKPRDAEHAAQMLRALSGQTHQVMTAVALADSQH-ILDCLVVTDVTFRTLSDQDIAGYVAS--GEPMDKAGAY  150 (197)
T ss_pred             EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCC-EEEEEEEEEEEEECCCHHHHHHHHHC--CCCCCEEEEE
T ss_conf             98999968999999999999997699529999999982994-89999989999924999999999824--9975640372


Q ss_pred             CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             00122332100011897532227699999999978989
Q gi|254780813|r  161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKVI  198 (199)
Q Consensus       161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gii  198 (199)
                      +|||.|..||++|+|||+||||||+.+++++|+++|++
T Consensus       151 ~Ieg~g~~li~~I~G~~~nVvGLPl~~l~~~L~~~~~l  188 (197)
T PRK03415        151 GIQGKGGCFVRKINGSYHAVVGLPLVETYELLSNFNAL  188 (197)
T ss_pred             ECCCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHCCCH
T ss_conf             01449676031016896323187799999999986774


No 14 
>PRK01839 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=398.02  Aligned_cols=194  Identities=25%  Similarity=0.425  Sum_probs=178.2

Q ss_pred             CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-----HCCCCCCCEEC
Q ss_conf             9875474269989999999789885997589884324220134457998999888765433321-----01377540341
Q gi|254780813|r    1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEV-----SNRYPESFVIG   75 (199)
Q Consensus         1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v-----~~~~~~~~VI~   75 (199)
                      |.++|||||+||||++||+++|++|++++|++||+....+.. ..+.+|.+++.++|..||.++     +..+|+.+|||
T Consensus         8 ~~p~IILAS~SprR~~lL~~~gi~f~~~~~~~dE~~~~~e~~-~~~~~p~~~v~~la~~Ka~~~~~~~~~~~~p~~~VIg   86 (209)
T PRK01839          8 LFPFLYLASQSPRRQELLQQLGVRYELLLPRPDEDAEALEAE-LPGEAPDAYVQRVCVAKAEAARARLVARGLPAAPVLV   86 (209)
T ss_pred             CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             788889857999999999878999589788998763201133-7899989999999999999999987640499997999


Q ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCC-CCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf             34431012344676100134699999851980378886653037-86100468741100122205789999962068867
Q gi|254780813|r   76 CDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQN-GKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKAL  154 (199)
Q Consensus        76 aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~-~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~  154 (199)
                      |||||+|+|+|+|||.|+++|++||+.|||++|.||||+|++.. ++.+|+++++|+|+|+++++++|++||++  ++|+
T Consensus        87 aDtiv~~~g~ilgKP~~~eeA~~~L~~lsGk~H~v~T~v~v~~~~~~~~~~~~~~t~V~f~~ls~~~I~~Yi~~--~e~~  164 (209)
T PRK01839         87 ADTTVTIDGAILGKPADAADALAMLTRLAGRTHRVLTAVAVIDATGELMPPALSRSRVRFAAATRDAIARYVAS--GEPF  164 (209)
T ss_pred             ECCEEEECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCC
T ss_conf             89889989999689999999999999866996699999999978996899999999999899998999999835--9984


Q ss_pred             CCCCEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             3321000012233210001189753222769999999997898
Q gi|254780813|r  155 LSVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       155 ~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      +|||||+|||.|..||++|+|||+||||||+.+|.++|+++||
T Consensus       165 ~kAG~y~Ieg~g~~li~~I~Gd~~nVvGLPl~~l~~~L~~~gv  207 (209)
T PRK01839        165 GKAGAYAIQGRAAEFVERIDGSYSGIMGLPLFETAALLRAARV  207 (209)
T ss_pred             CCCEEHHHCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             7231723443877610111898754128769999999998599


No 15 
>PRK00648 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=393.49  Aligned_cols=188  Identities=32%  Similarity=0.487  Sum_probs=177.1

Q ss_pred             CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCEECHHHH
Q ss_conf             987547426998999999978988599758988432422013445799899988876543332101-3775403413443
Q gi|254780813|r    1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSN-RYPESFVIGCDQT   79 (199)
Q Consensus         1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~-~~~~~~VI~aDtv   79 (199)
                      |..+|||||+||||++||+++|++|++++|++||+.++..      .+|.+++.++|..||.++.. .+|+.+|||||||
T Consensus         1 m~~~iILAS~S~~R~~lL~~~gi~f~v~~~~~dEe~~~~~------~~p~~~~~~lA~~Ka~~v~~~~~~~~~vI~aDtv   74 (191)
T PRK00648          1 MKYKIVLASSSPRRKEILEGFRIPFEVIPSPFVEESYPYS------LDPEEYTLELARLKAEAVRSDHFPDELIITADTI   74 (191)
T ss_pred             CCCCEEEECCCHHHHHHHHHCCCCCEEECCCCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEE
T ss_conf             9974999689999999999779995997899987767778------9999999999999999999721899889996849


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCE
Q ss_conf             10123446761001346999998519803788866530378610046874110012220578999996206886733210
Q gi|254780813|r   80 MSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGS  159 (199)
Q Consensus        80 v~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~  159 (199)
                      |+++|+|+|||.|.++|++||+.|||++|.|+||+|++.+++.. .++++|+|+|+++++++|++||++  ++|++||||
T Consensus        75 v~~~g~i~~KP~~~~eA~~~L~~lsGk~h~v~T~v~v~~~~~~~-~~~~~t~v~f~~ls~~~I~~Yv~~--~~~~~kAG~  151 (191)
T PRK00648         75 VWYDGKVLGKPKSEEEAIEMLKTLSGKTHEVITGVCIIHNGKLL-SGSETTQVTFRELSDEEIEYYIDT--YKPLDKAGA  151 (191)
T ss_pred             EEECCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCEEE-EEEEEEEEEECCCCHHHHHHHHHH--CCCCCEEEE
T ss_conf             99899996797659999999999789960999999999899999-999999999547999999999952--998763457


Q ss_pred             ECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             00012233210001189753222769999999997898
Q gi|254780813|r  160 YQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       160 y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      |+|||.|+.||++|+|||+||||||+.+|.++|+++||
T Consensus       152 y~ieg~g~~~i~~I~G~~~~V~GLPl~~l~~~L~~~gi  189 (191)
T PRK00648        152 YGIQEWGGLIIKKIEGSYYNVQGLPIQTLYKLLKELNI  189 (191)
T ss_pred             HHHCCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             12542877514641899654048889999999998689


No 16 
>PRK02141 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=393.15  Aligned_cols=186  Identities=30%  Similarity=0.395  Sum_probs=171.8

Q ss_pred             CCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCCEECHHHH
Q ss_conf             75474269989999999789885997589884324220134457998999888765433321013---775403413443
Q gi|254780813|r    3 KNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNR---YPESFVIGCDQT   79 (199)
Q Consensus         3 ~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~---~~~~~VI~aDtv   79 (199)
                      ++|||||+||||++||+++|++|++++|+|||++.+.       .+|.+++.++|+.||++++..   .|+.+|||||||
T Consensus         9 pklILAS~SprR~eLL~~~Gi~f~v~~~~iDE~~~~~-------~~p~~~~~~lA~~KA~~v~~~~~~~~~~lVIgaDtv   81 (206)
T PRK02141          9 PRLILASSSRYRRELLERLRLPFDVVSPDIDETPLAG-------ETPAATALRLAAAKARAVAATIDAPPGALVIGSDQV   81 (206)
T ss_pred             CCEEEECCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECEE
T ss_conf             9799937999999999878999599858999888999-------999999999999999999876105999799994979


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCC-CCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             10123446761001346999998519803788866530378-61004687411001222057899999620688673321
Q gi|254780813|r   80 MSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG-KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVG  158 (199)
Q Consensus        80 v~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~-~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG  158 (199)
                      |+++|+|||||.|+++|++||+.|||++|.||||+|++.+. ...+....+|+|+|+++++++|++||++  ++|++|||
T Consensus        82 v~~~g~ilgKP~~~~~A~~~L~~LsGk~H~v~T~v~l~~~~~~~~~~~~~~t~V~f~~ls~~eI~~Yv~~--~ep~~kAG  159 (206)
T PRK02141         82 ATFDGLQIGKPGTHERALAQLRAMRGRTVEFHSALCLYDSRTGETQSEDIVTRVRFRTLTDAELDAYLRA--ETPYDVAG  159 (206)
T ss_pred             EEECCEECCCCCCHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCE
T ss_conf             9859997369999999999998625991999999999978987799999989999889999999999974--98110617


Q ss_pred             EECCCCCHHHHHHEECCC-CCCCCCCCHHHHHHHHHHCCC
Q ss_conf             000012233210001189-753222769999999997898
Q gi|254780813|r  159 SYQIDKEGIQLFSSIKGS-YFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       159 ~y~ie~~g~~~i~~I~Gd-~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      ||+|||.|..||++|+|| |+||||||+.+|+++|+++|+
T Consensus       160 ~Y~ieg~G~~li~~I~G~~~tnVvGLPl~~l~~~L~~~G~  199 (206)
T PRK02141        160 SAKSEGLGIALLDAIDSDDPTALVGLPLIALTRMLRAAGY  199 (206)
T ss_pred             EEEEECCHHHHEEEEECCCCCEEECCCHHHHHHHHHHCCC
T ss_conf             9988005161276707799985741899999999997698


No 17 
>PRK01441 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=391.01  Aligned_cols=186  Identities=28%  Similarity=0.387  Sum_probs=174.1

Q ss_pred             CCEEECCCCHHHHHHHHHCCCCC-EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH------CCCCCCCEEC
Q ss_conf             75474269989999999789885-9975898843242201344579989998887654333210------1377540341
Q gi|254780813|r    3 KNIILASSSLSRRKLLQNSGIQF-SVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVS------NRYPESFVIG   75 (199)
Q Consensus         3 ~~iILAS~S~~R~~lL~~~gi~f-~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~------~~~~~~~VI~   75 (199)
                      ++|||||+||||++||+++|++| .+.|+++||++.+.+       .|.+++..+|..||+++.      ..+|+.+|||
T Consensus         5 ~riILAS~SprR~~LL~~~gi~~~~v~p~~iDE~~~~~~-------~p~~~~~~la~~Ka~a~~~~~~~~~~~~~~~VIg   77 (207)
T PRK01441          5 PKLVLASGSPRRLELLNQAGIEPDRLRPADIDETPKRGE-------HPRSLARRLSRAKAEAALESLQGDDGLRGAFILA   77 (207)
T ss_pred             CCEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCC-------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             959996899999999986799816997699788888664-------9899999999999999998703233479988999


Q ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             34431012344676100134699999851980378886653037861004687411001222057899999620688673
Q gi|254780813|r   76 CDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALL  155 (199)
Q Consensus        76 aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~  155 (199)
                      |||||+++|+|+|||.|+++|++||+.|||++|+||||+|++.+++.+|+++++|+|+|++++|++|++||++  ++|++
T Consensus        78 aDTvv~~~g~ilgKP~~~~~A~~~L~~lsGk~H~v~Tgv~l~~~~~~~~~~~~~t~V~fr~ls~~~I~~Yv~~--~e~~~  155 (207)
T PRK01441         78 ADTVVAVGRRILPKAELVDEASQCLRLLSGRNHRVYTGVCLVTPKGNLRQRLVETRVRFKRLSREDIEAYLAS--GEWRG  155 (207)
T ss_pred             ECEEEEECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCC
T ss_conf             6929997999947999999999999997599179998999998997489999989999788999999999965--99848


Q ss_pred             CCCEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             321000012233210001189753222769999999997898
Q gi|254780813|r  156 SVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       156 ~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      |||||+|||.|+.||++|+|||+||||||+.++.++|+++|+
T Consensus       156 kAG~Y~iqg~g~~li~~I~G~~~nV~GLPl~~l~~~L~~~G~  197 (207)
T PRK01441        156 KAGGYAIQGIAGSFVVKLVGSYTNVVGLPLYETVSLLAGEGF  197 (207)
T ss_pred             CCEEEEECCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             878898633867621010789974057879999999998699


No 18 
>PRK03098 consensus
Probab=100.00  E-value=0  Score=392.43  Aligned_cols=182  Identities=32%  Similarity=0.523  Sum_probs=173.9

Q ss_pred             EECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCC
Q ss_conf             74269989999999789885997589884324220134457998999888765433321013775403413443101234
Q gi|254780813|r    6 ILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSS   85 (199)
Q Consensus         6 ILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~   85 (199)
                      ||||+||||++||+++|++|+++||+|||+..+       ..+|.+++.++|+.||++++.++|+.+||||||||+|+|+
T Consensus         1 ILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~-------~~~p~~~~~~lA~~KA~~v~~~~~~~~vI~aDtvv~~~g~   73 (185)
T PRK03098          1 ILASGSPRRKELLELAGVPFEIIVSEVEETIGA-------YSSPSEIVQSLALQKASAVAENNPDAIVLGADTIVTYDGR   73 (185)
T ss_pred             CCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEEECCE
T ss_conf             979699999999986899959977999999999-------9699999999999999999987899879987718971997


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCCCC
Q ss_conf             46761001346999998519803788866530378610046874110012220578999996206886733210000122
Q gi|254780813|r   86 IYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKE  165 (199)
Q Consensus        86 i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y~ie~~  165 (199)
                      ++|||.|+++|++||+.|||++|+||||+|++.+++. +.++++|+|+|+++++++|++||++  ++|++|||||+|||.
T Consensus        74 ilgKP~~~~eA~~~L~~lsGk~h~v~T~v~v~~~~~~-~~~~~~t~v~f~~ls~~eI~~Yl~~--~~~~~kAG~y~ie~~  150 (185)
T PRK03098         74 ILGKPSDEEEAKEMLQLLSGKTHEVYTGVAIIAKDKT-VTFYERTEVTFWELTEEEIDAYIAT--KEPLDKAGSYGIQGK  150 (185)
T ss_pred             EECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCEE-EEEEEEEEEEEECCCHHHHHHHHHC--CCCCCCCEEHHHCCC
T ss_conf             8469765999999999977991799989999989989-9985204899926999999999845--997661147112218


Q ss_pred             HHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             33210001189753222769999999997898
Q gi|254780813|r  166 GIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       166 g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      |..||++|+|||+||||||+.+|+++|+++|+
T Consensus       151 g~~li~~I~Gd~~~V~GLPl~~l~~~L~~~G~  182 (185)
T PRK03098        151 GALFVKHIQGDYYSVVGLPISRTVRELKQFGI  182 (185)
T ss_pred             HHHHEEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             68510010898322436779999999998599


No 19 
>PRK00078 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=391.34  Aligned_cols=187  Identities=28%  Similarity=0.459  Sum_probs=174.6

Q ss_pred             CCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCEECHHHHH
Q ss_conf             7547426998999999978988599758988432422013445799899988876543332101377--54034134431
Q gi|254780813|r    3 KNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYP--ESFVIGCDQTM   80 (199)
Q Consensus         3 ~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~--~~~VI~aDtvv   80 (199)
                      .+|||||+||||++||+++|++|+++||+|||+.++..      .+|.+++.++|..||.+++.+++  +.+||||||||
T Consensus         1 mklILAS~S~~R~~lL~~~g~~f~v~~~~idE~~~~~~------~~~~~~v~~lA~~Ka~~v~~~~~~~~~~Vi~aDtvv   74 (192)
T PRK00078          1 MKVILASASERRQELLKRIVEDFQVIVSDFDESSVPFK------GNIESYVMNLAEGKARSVSKKLDNESAIVIGCDTVV   74 (192)
T ss_pred             CEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECEEE
T ss_conf             97999279999999997189997997199897988778------998999999999999999975279997999968199


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCE
Q ss_conf             01234467610013469999985198037888665303-78610046874110012220578999996206886733210
Q gi|254780813|r   81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQ-NGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGS  159 (199)
Q Consensus        81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~-~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~  159 (199)
                      +++|+|+|||.|+++|++||+.|||++|+||||+|++. ++..+|.++++|+|+|+++++++|++||++  ++|++||||
T Consensus        75 ~~~g~ilgKP~~~~eA~~~L~~lsgk~h~v~T~v~l~~~~~~~~~~~~~~t~V~f~~ls~~~I~~Yv~~--~~~~~kAG~  152 (192)
T PRK00078         75 AFNGKVLGKPKDEEDAFEMLKALSGNEHEVYSGIAILDTKSNKIITDFVCTEVKFSELTDRQIRKYINT--GEPMDKAGA  152 (192)
T ss_pred             EECCEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCEEEE
T ss_conf             989999679999999985056508994799999999988999799999989999848999999999804--997471048


Q ss_pred             ECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             00012233210001189753222769999999997898
Q gi|254780813|r  160 YQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       160 y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      |+|||.|..||++|+|||+||||||+.+|+++|+++||
T Consensus       153 y~ieg~g~~~i~~I~G~~~nV~GLPl~~l~~~L~~~G~  190 (192)
T PRK00078        153 YGIQGKGGVFVEEINGCYYNVVGLPLNKLYKMLEEMGV  190 (192)
T ss_pred             EECCCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             20233856553411998765027899999999998689


No 20 
>PRK04694 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=390.39  Aligned_cols=184  Identities=27%  Similarity=0.417  Sum_probs=175.0

Q ss_pred             EEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH----HHCCCCCCCEECHHHHH
Q ss_conf             47426998999999978988599758988432422013445799899988876543332----10137754034134431
Q gi|254780813|r    5 IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE----VSNRYPESFVIGCDQTM   80 (199)
Q Consensus         5 iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~----v~~~~~~~~VI~aDtvv   80 (199)
                      |||||+||||++||+++|++|++++|++||...+.       ..|.+++.++|..||++    ++..+|+.+||||||||
T Consensus         2 iILAS~SprR~~lL~~~gi~f~v~~~didE~~~~~-------~~p~~~v~~lA~~KA~~~~~~~~~~~~~~~VIgaDtvv   74 (190)
T PRK04694          2 LYLASRSPRRRELLQRLDVPFQTLQLDVPEVRAAD-------ESPDHYVQRVALEKAHAGLALVQAADADAIVLGSDTEV   74 (190)
T ss_pred             EEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEE
T ss_conf             89988999999999878998399669998776877-------79899999999999999889877538998899238299


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             01234467610013469999985198037888665303786100468741100122205789999962068867332100
Q gi|254780813|r   81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY  160 (199)
Q Consensus        81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y  160 (199)
                      +++|+|+|||.|+++|++||+.|||++|+||||+|++.+++..|.++++|+|+|+++++++|++|+++  ++|++|||||
T Consensus        75 ~~~g~ilgKP~~~~~A~~~L~~lsGk~H~v~T~v~l~~~~~~~~~~~~~t~v~f~~ls~~~I~~Yv~~--~e~~~kAG~Y  152 (190)
T PRK04694         75 VLGERVFGKPVDVDDAIAMLRALSGRTHQVLTAVVLVCAQRAPAQALVVSEVTFDLLDDAQIAAYAAS--GEPMGKAGAY  152 (190)
T ss_pred             EECCEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCCCEEE
T ss_conf             98999978989999999999997899389999999997898369999999999887999999999855--9986602174


Q ss_pred             CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             0012233210001189753222769999999997898
Q gi|254780813|r  161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      +|||.|..||++|+|||+||||||+.+|+++|+++|.
T Consensus       153 ~iqg~g~~li~~I~Gd~~nVvGLPl~~l~~~L~~~G~  189 (190)
T PRK04694        153 AIQGRAERFIRHLSGSYSGVMGLPLYQTSQLLTAFGA  189 (190)
T ss_pred             EECCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             3234866565545888310446779999999997499


No 21 
>pfam02545 Maf Maf-like protein. Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea.
Probab=100.00  E-value=0  Score=387.97  Aligned_cols=186  Identities=31%  Similarity=0.466  Sum_probs=173.6

Q ss_pred             CCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCCEECHHHHH
Q ss_conf             754742699899999997898859975898843242201344579989998887654333210137--754034134431
Q gi|254780813|r    3 KNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRY--PESFVIGCDQTM   80 (199)
Q Consensus         3 ~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~--~~~~VI~aDtvv   80 (199)
                      .+|||||+||||++||+++|++|++++|++||++++.+      .+|.+++.++|..||.++....  ++.+||||||||
T Consensus         1 m~lILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~------~~p~~~~~~lA~~KA~~~~~~~~~~~~ivi~aDtiv   74 (193)
T pfam02545         1 MPLILASTSPRRKELLEDLGIPFEVIVSYFDEESVLYS------LDPREYVVDLACEKALAKVAQLAPDNALIIGADTVV   74 (193)
T ss_pred             CCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEE
T ss_conf             99999379999999999779993997899898878676------786689999999999999997479996999936599


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             01234467610013469999985198037888665303786100468741100122205789999962068867332100
Q gi|254780813|r   81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY  160 (199)
Q Consensus        81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y  160 (199)
                      +|+|+|+|||.|.++|++||+.|||++|+||||+|++.+++ +|.++++|+|+|+++++++|++|+++  ++|++|||||
T Consensus        75 ~~~g~il~KP~~~~eA~~~L~~lsGk~h~v~Tav~l~~~~~-~~~~~~~t~v~f~~ls~~~I~~Yl~~--~~~~~kaG~y  151 (193)
T pfam02545        75 ILGGRILGKPKDKEEAREMLRKLSGNVHSVYTGLALISPEK-NLLFLEVTKVKFRDLSDEEIEAYVES--GEPLDKAGAY  151 (193)
T ss_pred             EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCE-EEEEEEEEEEEEECCCHHHHHHHHCC--CCCCCEEEEE
T ss_conf             98999978999999999999998799669999999998993-99999989999957999999999706--9998788999


Q ss_pred             CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             0012233210001189753222769999999997898
Q gi|254780813|r  161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      +|||.|..||++|+|||+||||||+.+|+++|+++|+
T Consensus       152 ~ie~~g~~~i~~I~G~~~~V~GLPl~~l~~~L~~~G~  188 (193)
T pfam02545       152 GIQGFGGLFIKKIEGDYYNVVGLPLPKLRSLLRRLGI  188 (193)
T ss_pred             EECCCHHHCEEEEECCCHHCCCCCHHHHHHHHHHCCC
T ss_conf             8734855431234888101147889999999998689


No 22 
>PRK04719 consensus
Probab=100.00  E-value=0  Score=387.00  Aligned_cols=184  Identities=31%  Similarity=0.463  Sum_probs=173.6

Q ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCCCEECHHHHH
Q ss_conf             87547426998999999978988599758988432422013445799899988876543332-10137754034134431
Q gi|254780813|r    2 IKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE-VSNRYPESFVIGCDQTM   80 (199)
Q Consensus         2 ~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~-v~~~~~~~~VI~aDtvv   80 (199)
                      |.+|||||+||||++||+++|++|++++|++||...+       ..+|.+++.++|+.||++ ++..+|+.+||||||||
T Consensus         3 mm~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~-------~~~p~~~v~~lA~~Ka~~~~~~~~~~~~VigaDtvv   75 (188)
T PRK04719          3 ILKLVLASGSPRRKELLAQLGYQFDVVLPDVEECKQE-------HETAAQYVLRLSRDKAQAGLALVKATSVVLGSDTIV   75 (188)
T ss_pred             CCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEE
T ss_conf             6889990799999999987799958978999978788-------889999999999999999988628998899708799


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             01234467610013469999985198037888665303786100468741100122205789999962068867332100
Q gi|254780813|r   81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY  160 (199)
Q Consensus        81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y  160 (199)
                      +++|+++|||.|.++|++||+.|||++|.|+||+|++.+++ .+.++++|+|+|+++++++|++|+++  ++|++|||||
T Consensus        76 ~~~g~i~gKP~~~~~A~~~L~~lsGk~H~v~T~v~i~~~~~-~~~~~~~t~v~f~~ls~~~I~~Yl~~--~e~~~kAG~Y  152 (188)
T PRK04719         76 VCDGQVLEKPKDFADAKRMLLKLSGRQHQVMTAVTVVSREK-QHSVVVTTEVWFKTLSEEEIEQYWQS--GEPCDKAGSY  152 (188)
T ss_pred             EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCE-EEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCEEEEE
T ss_conf             98999978988999999999985799679999999998997-89999999999558999999999844--9956604886


Q ss_pred             CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             00122332100011897532227699999999978
Q gi|254780813|r  161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIE  195 (199)
Q Consensus       161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~  195 (199)
                      +|||.|+.||++|+|||+||||||+.++.++|+++
T Consensus       153 ~ieg~g~~li~~I~G~~~~V~GLPl~~l~~~L~~~  187 (188)
T PRK04719        153 GIQGLGGRFVTRIEGSYHAVVGLPLYETDQLLHEF  187 (188)
T ss_pred             ECCCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             11228575130318985422087799999999976


No 23 
>PRK01526 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=384.19  Aligned_cols=186  Identities=28%  Similarity=0.438  Sum_probs=171.3

Q ss_pred             CCEEECCCCHHHHHHHHHCCC-CCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCEECHHHHH
Q ss_conf             754742699899999997898-859975898843242201344579989998887654333210137-754034134431
Q gi|254780813|r    3 KNIILASSSLSRRKLLQNSGI-QFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRY-PESFVIGCDQTM   80 (199)
Q Consensus         3 ~~iILAS~S~~R~~lL~~~gi-~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~-~~~~VI~aDtvv   80 (199)
                      .+|||||+||||++||+++|+ +|+++|+++||++...       ..|.+++.++|..||.+++.++ ++.+||||||||
T Consensus         8 ~~iILAS~SprR~eLL~~~gi~~~~v~p~~idE~~~~~-------~~p~~~a~~lA~~KA~~v~~~~~~~~~VIgaDTvv   80 (205)
T PRK01526          8 LPIILASSSPARIELLNRIKIIPSQIIPADIDETPNLR-------ELPAPLAIRLAYEKAIKIASQIEESAIIIAADTVA   80 (205)
T ss_pred             CCEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEE
T ss_conf             96999079999999998779983299579988888866-------59999999999999999998529998999979399


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCC---CEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             012344676100134699999851980378886653037861---00468741100122205789999962068867332
Q gi|254780813|r   81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKV---LRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSV  157 (199)
Q Consensus        81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~---~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~a  157 (199)
                      +++|+++|||.|.++|++||+.|||++|.|+||+|++.+++.   .+.++++|.|+|+++++++|++||++  ++|++||
T Consensus        81 ~~~g~il~KP~~~eeA~~~L~~lsGk~H~v~Tgv~i~~~~~~~~~~~~~~~~t~v~f~~ls~~eI~~Yv~~--~e~~~kA  158 (205)
T PRK01526         81 AVGRRILPKATTYEEVKNCIKMLSGRRHRVYTGLCIIKKENDQLTVRQKIVQTIVKFKKLSDEEINFYCSL--DEGIDKA  158 (205)
T ss_pred             EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCEE
T ss_conf             98999968999999999999997799179998999998899838999899999999167999999999963--9853604


Q ss_pred             CEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             1000012233210001189753222769999999997898
Q gi|254780813|r  158 GSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       158 G~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      |||+|||.|..||++|+|||+||||||+.+|+++|+++|+
T Consensus       159 G~y~ieg~g~~li~~I~Gd~~nV~GLPl~~l~~~L~~~G~  198 (205)
T PRK01526        159 GGCKISGYAEAFISFISGSYSNVMGLPLFETVNALTSLGF  198 (205)
T ss_pred             EEEEECCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             8998702747515232899753055769999999997699


No 24 
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=100.00  E-value=0  Score=383.35  Aligned_cols=179  Identities=38%  Similarity=0.584  Sum_probs=171.7

Q ss_pred             EEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCEECHHHHHCCC
Q ss_conf             47426998999999978988599758988432422013445799899988876543332101377-54034134431012
Q gi|254780813|r    5 IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYP-ESFVIGCDQTMSLG   83 (199)
Q Consensus         5 iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~-~~~VI~aDtvv~~~   83 (199)
                      |||||+||||++||+++|++|++++|+|||++++.       .+|.+++.++|++||++++++++ +.+||||||||+++
T Consensus         1 iILaS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~-------~~p~~~~~~lA~~KA~~v~~~~~~~~iiI~aDtvv~~~   73 (180)
T cd00555           1 LILASASPRRRELLEQLGIPFEVVPSDIDETPIKG-------ESPEDYVLRLAEAKAEAVAARLPPDALVIGADTVVVLD   73 (180)
T ss_pred             CEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEC
T ss_conf             98777999999999977998499789999898889-------99999999999999999997478998899818099989


Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCC
Q ss_conf             34467610013469999985198037888665303786100468741100122205789999962068867332100001
Q gi|254780813|r   84 SSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQID  163 (199)
Q Consensus        84 g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y~ie  163 (199)
                      |+|+|||.|+++|++||+.|||++|.||||+|++.+++.+|.++++|+|+|+++++++|++||++  ++|++|||||+||
T Consensus        74 g~i~~KP~~~~~A~~~L~~lsgk~h~v~T~v~v~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yv~~--~~~~~~aG~y~ie  151 (180)
T cd00555          74 GRILGKPKDREEAREMLKRLSGRTHEVYTGVALIDPGGKLVTDVESTKVRFRELSDEEIEAYVAS--GEPLDKAGAYGIQ  151 (180)
T ss_pred             CEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEEEEEEEEEEECCHHHHHHHHHC--CCCCCEEEEEEEC
T ss_conf             99847987699999967753799479999999998996799999999999961999999999853--9975601573305


Q ss_pred             CCHHHHHHEECCCCCCCCCCCHHHHHHHH
Q ss_conf             22332100011897532227699999999
Q gi|254780813|r  164 KEGIQLFSSIKGSYFSIVGLPIIELINDL  192 (199)
Q Consensus       164 ~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L  192 (199)
                      |.|..||++|+|||+||||||+.+|+++|
T Consensus       152 ~~g~~~i~~i~G~~~~i~GLPl~~l~~~L  180 (180)
T cd00555         152 GLGGALIERIEGDYSNVVGLPLPELLKLL  180 (180)
T ss_pred             CCHHHCEEEEECCCCCEECCCHHHHHHHC
T ss_conf             59543526559973200467899999549


No 25 
>PRK04056 Maf-like protein; Reviewed
Probab=100.00  E-value=0  Score=378.54  Aligned_cols=178  Identities=24%  Similarity=0.298  Sum_probs=167.1

Q ss_pred             EEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-CEECHHHHHCCC
Q ss_conf             4742699899999997898859975898843242201344579989998887654333210137754-034134431012
Q gi|254780813|r    5 IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPES-FVIGCDQTMSLG   83 (199)
Q Consensus         5 iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~-~VI~aDtvv~~~   83 (199)
                      |||||+||||++||+++|++|+++||++||++++.       .+|.+++.++|..||+++...+++. +||||||||+++
T Consensus         2 iILAS~SprR~~lL~~~gi~f~~~~~~iDE~~~~~-------~~p~~~v~~la~~Ka~~~~~~~~~~~~vi~aDtvv~~~   74 (180)
T PRK04056          2 IILASSSPTRANLLKEAGIEFEQKSVDFDEESIKK-------TSPKEFVYLAVKGKLEQALKLYGNNCNLLVADSVVSCD   74 (180)
T ss_pred             EEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEEEEC
T ss_conf             89978999999999977999699718999988777-------89999999999999999998719998699978699989


Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCC
Q ss_conf             34467610013469999985198037888665303786100468741100122205789999962068867332100001
Q gi|254780813|r   84 SSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQID  163 (199)
Q Consensus        84 g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y~ie  163 (199)
                      |+++|||.|+++|++||+.|||++|.|+||+++..+ ...|.++++|+|+|+++++++|++|+++  ++|++|||||+||
T Consensus        75 g~ilgKP~~~~~A~~~L~~lsGk~h~v~T~v~~~~~-~~~~~~~~~t~v~f~~ls~~~I~~Yi~~--~~~~~kAG~y~Iq  151 (180)
T PRK04056         75 GKILRKAKDKEEAREMLKLQSGNEISVLTCMIFISP-EKEVLDLSVTTYRFAKFDEDDLEKYLES--GLWQGKAGACMVE  151 (180)
T ss_pred             CEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEEECC-CEEEEEEEEEEEEECCCCHHHHHHHHHC--CCCCCEEEEEEEC
T ss_conf             999879999999999999868993999999999729-9899999999999977999999999966--9985450587435


Q ss_pred             CCHHHHHHEECCCCCCCCCCCHHHHHHHH
Q ss_conf             22332100011897532227699999999
Q gi|254780813|r  164 KEGIQLFSSIKGSYFSIVGLPIIELINDL  192 (199)
Q Consensus       164 ~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L  192 (199)
                      |.|+.||++|+|||+||||||+.+|.++|
T Consensus       152 ~~g~~li~~I~G~~~nV~GLPl~~L~~~L  180 (180)
T PRK04056        152 GFHKKYIKSQSGNLSTAMGLNVEGLKGFL  180 (180)
T ss_pred             CCHHHCEEECCCCCCCCCCCCHHHHHHHC
T ss_conf             28554387369779870377599999639


No 26 
>PRK03797 consensus
Probab=100.00  E-value=0  Score=376.36  Aligned_cols=180  Identities=36%  Similarity=0.562  Sum_probs=169.5

Q ss_pred             EEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCC
Q ss_conf             47426998999999978988599758988432422013445799899988876543332101377540341344310123
Q gi|254780813|r    5 IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGS   84 (199)
Q Consensus         5 iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g   84 (199)
                      |||||+||||++||+++ ++|+++||++||+..        ..+|.+++.++|+.||.+++.++|+.+||||||||+++|
T Consensus         2 lILAS~Sp~R~~lL~~~-i~f~v~~~~idE~~~--------~~~p~~~~~~lA~~KA~~v~~~~~~~~VIgaDtvv~~~g   72 (186)
T PRK03797          2 IILASSSPRRREILSRF-FEIKVYPSNVSERSS--------IKDPREHALDLARKKALEVYSRFPKATIIAADTIVSLGG   72 (186)
T ss_pred             EEECCCCHHHHHHHHCC-CCCEEECCCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEEECC
T ss_conf             89868999999999757-997997899898888--------889999999999999999998789986999862999899


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCCC
Q ss_conf             44676100134699999851980378886653037861004687411001222057899999620688673321000012
Q gi|254780813|r   85 SIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDK  164 (199)
Q Consensus        85 ~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y~ie~  164 (199)
                      +|+|||.|.++|++||+.|||++|.|+||+|++.+++.. .++++|+|+|+++++++|++||++  ++|++|||||+|||
T Consensus        73 ~i~gKP~~~~eA~~~L~~lsGk~h~v~T~v~i~~~~~~~-~~~~~t~V~f~~l~~~~I~~Yv~~--~~~~~kAG~y~ieg  149 (186)
T PRK03797         73 KILGKPKNEEEARKMLKTLSGKVHLVITGYCIIHNGKII-EGAEETEVKFRELSEDLIEWYIST--GEWKDKAGAYGIQG  149 (186)
T ss_pred             EEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCEEE-EEEEEEEEEECCCCHHHHHHHHHC--CCCCCEEEEEEECC
T ss_conf             996799999999999999789926999999999999999-999999999657999999999963--99865118873232


Q ss_pred             CHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             233210001189753222769999999997898
Q gi|254780813|r  165 EGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       165 ~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      .|..||++|+|||+||||||+..+.++| ++|+
T Consensus       150 ~g~~~i~~i~Gd~~~ViGLPl~~l~~ll-~~G~  181 (186)
T PRK03797        150 YGSIFVEWIRGDYYNVVGLPIKVIVKLI-ELGF  181 (186)
T ss_pred             CHHHHCCCCCCCCCCCCCCCHHHHHHHH-HCCC
T ss_conf             8675102028996444178899999999-7689


No 27 
>PRK01946 consensus
Probab=100.00  E-value=0  Score=366.94  Aligned_cols=183  Identities=33%  Similarity=0.479  Sum_probs=166.4

Q ss_pred             CCEEECCCCHHHHHHHHHCCCCCEEEC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCEECHHHHH
Q ss_conf             754742699899999997898859975-898843242201344579989998887654333210-137754034134431
Q gi|254780813|r    3 KNIILASSSLSRRKLLQNSGIQFSVVK-PNIDEREMEKKMDFSERKRPEKIALILAEKKALEVS-NRYPESFVIGCDQTM   80 (199)
Q Consensus         3 ~~iILAS~S~~R~~lL~~~gi~f~~~~-~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~-~~~~~~~VI~aDtvv   80 (199)
                      .+|||||+||||++||+++|++|++.+ |++||+..+       ..+|.+++.++|+.||.++. ..+|+.+||||||||
T Consensus         9 ~~iILAS~Sp~R~~lL~~~gi~f~v~~~~~~dE~~~~-------~~~~~~~~~~lA~~KA~~v~~~~~~~~lVI~aDtvv   81 (195)
T PRK01946          9 YKIILASGSPRRKELLSGLGIDFEVRTLPDVDESYPD-------TLQREEIPLYLARLKAEAYRSMMKPNELLITADTIV   81 (195)
T ss_pred             CEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEE
T ss_conf             9799978999999999977999789438998888888-------889889999999999999997248998899847399


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             01234467610013469999985198037888665303786100468741100122205789999962068867332100
Q gi|254780813|r   81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY  160 (199)
Q Consensus        81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y  160 (199)
                      +++|+|+|||.|.++|++||+.|||++|.|+||+|+..+++.. .++++|+|+|+++++++|++|+++  ++|++|||||
T Consensus        82 ~~~g~i~~KP~~~~eA~~~L~~lsGk~h~v~T~v~v~~~~~~~-~~~~~t~v~f~~ls~~~I~~Yl~~--~~~~~kAG~y  158 (195)
T PRK01946         82 WLDGKALGKPKDREEAVEMLRSLSGKTHQVITGVCFTTKEKQK-SFSDVTDVTFAELSDEEINYYVDN--YKPFDKAGSY  158 (195)
T ss_pred             EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCEEE-EEEEEEEEEEEECCHHHHHHHHHC--CCCCCEEEEE
T ss_conf             8899997698999999999999789976999999999899278-999999999943999999999705--9976634579


Q ss_pred             CCCC-CHHHHHHEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             0012-2332100011897532227699999999978
Q gi|254780813|r  161 QIDK-EGIQLFSSIKGSYFSIVGLPIIELINDLKIE  195 (199)
Q Consensus       161 ~ie~-~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~  195 (199)
                      +||+ .|..||++|+|||+||||||+.+|+++|++.
T Consensus       159 ~iqe~~g~~~i~~I~G~~~nVvGLPl~~l~~~L~~l  194 (195)
T PRK01946        159 GIQEWIGFIGVKKIEGSYYNVMGLPVQKLYRELKKL  194 (195)
T ss_pred             EEECHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             615426660465428998752476799999999975


No 28 
>TIGR00172 maf septum formation protein Maf; InterPro: IPR003697   Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea. The Maf protein shares substantial amino acid sequence identity with the Escherichia coli OrfE protein . .
Probab=100.00  E-value=0  Score=366.79  Aligned_cols=187  Identities=30%  Similarity=0.485  Sum_probs=174.2

Q ss_pred             CCCCEEECCCCHHHHHHHHHCC--CCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCCC-----
Q ss_conf             9875474269989999999789--88599758988432422013445799899988876543332-101377540-----
Q gi|254780813|r    1 MIKNIILASSSLSRRKLLQNSG--IQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE-VSNRYPESF-----   72 (199)
Q Consensus         1 m~~~iILAS~S~~R~~lL~~~g--i~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~-v~~~~~~~~-----   72 (199)
                      |++.|||||+||||++||+++|  +.|+++.+.|||+..+.    ....+|.++|..+|+.||++ |+..++|.+     
T Consensus         1 m~~~liLAS~SP~R~~LL~~~~Gii~f~~~v~~~dEnld~~----~~~~~p~~~V~~lak~KA~~Gva~~~~d~~~enPn   76 (212)
T TIGR00172         1 MPKELILASTSPRRKELLEELGGIISFEVAVSEFDENLDKS----LKSTSPREYVLRLAKEKAQAGVAELLADALAENPN   76 (212)
T ss_pred             CCCCCEECCCCHHHHHHHHHHCCCCCCHHEECCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC
T ss_conf             99873424788689999998478635011002012010123----55579689999999999987799861030013744


Q ss_pred             -------EECHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCC---EEEEEEEEECCCC-C---CCEEEEEEEEEECCCC
Q ss_conf             -------34134431012-344676100134699999851980---3788866530378-6---1004687411001222
Q gi|254780813|r   73 -------VIGCDQTMSLG-SSIYHKPVDMLEAEKNLLRISGKK---HRISSAYVLVQNG-K---VLRHHISVAQLTMYKL  137 (199)
Q Consensus        73 -------VI~aDtvv~~~-g~i~~KP~~~~eA~~~L~~lsg~~---h~v~T~~~i~~~~-~---~~~~~~~~t~v~f~~l  137 (199)
                             ||||||||..+ |+++|||+|+++|.+||+++||+.   |.|+||++++... +   ..+..++.|.|+|+++
T Consensus        77 eidkPkliigaD~~v~~~sG~~~~KP~~~e~A~~~L~k~~G~~deP~~v~Ta~aL~~~~~~enf~~~~~~~~t~V~F~~~  156 (212)
T TIGR00172        77 EIDKPKLIIGADTVVILDSGEILGKPKTKEEAAEFLRKLSGQEDEPVEVYTAVALIDSVQRENFHLLTFLDVTKVHFRAL  156 (212)
T ss_pred             CCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCEEEEECCCCEEEEECCC
T ss_conf             13587379971358882787103587888899999875168868871342110123102786236641244313563267


Q ss_pred             CHH-HHHHHHHHCCCCCCCCCCEECCCCCHHHHHHEECC-CCCCCCCCCHHHHHHHHH
Q ss_conf             057-89999962068867332100001223321000118-975322276999999999
Q gi|254780813|r  138 SEE-FIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKG-SYFSIVGLPIIELINDLK  193 (199)
Q Consensus       138 ~~~-~I~~Yi~~~~~~~~~~aG~y~ie~~g~~~i~~I~G-d~~~V~GLPi~~l~~~L~  193 (199)
                      +|+ +|+.||++  ++|++|||||+|||.|+.||++|+| ||+|||||||..|++.|+
T Consensus       157 ~~~r~I~~Yv~s--~~pl~~AGaf~~eG~G~~li~k~~Gr~~~~vvGLpl~~l~~~L~  212 (212)
T TIGR00172       157 DDEREIEKYVES--GEPLECAGAFKIEGFGALLIKKIEGRDYSNVVGLPLEKLLKLLR  212 (212)
T ss_pred             CCHHHHHHHHHC--CCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHCC
T ss_conf             926789997405--88731155244428774026641576744210548799986339


No 29 
>KOG1509 consensus
Probab=100.00  E-value=6.2e-44  Score=293.35  Aligned_cols=188  Identities=29%  Similarity=0.434  Sum_probs=172.1

Q ss_pred             CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC------CCCEE
Q ss_conf             987547426998999999978988599758988432422013445799899988876543332101377------54034
Q gi|254780813|r    1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYP------ESFVI   74 (199)
Q Consensus         1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~------~~~VI   74 (199)
                      |-.++||||+||||++|++.+|+++++++++|+|+.++..     ..+|.+++..+|+.||+.+.++.+      ..++|
T Consensus         8 ~~~riiL~S~s~rrk~i~~~~G~~~~~~~S~feEnl~k~~-----~~~p~~yv~~tA~~KA~~I~erL~~~Ed~~~~~vi   82 (209)
T KOG1509           8 KGKRIILASASPRRKQILAEMGLNLEVVVSTFEENLIKSS-----FETPEDYVVETAKQKAEEIIERLGDGEDSFPDVVI   82 (209)
T ss_pred             CCCEEEEECCCCHHHHHHHHCCCCEEEEECCCHHHCHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             6837998048904899998749836997245411120212-----58878889999898999999986325667755321


Q ss_pred             CHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCC----CCCEEEEEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf             1344310123446761001346999998519803788866530378----610046874110012220578999996206
Q gi|254780813|r   75 GCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG----KVLRHHISVAQLTMYKLSEEFIKFYLNKIG  150 (199)
Q Consensus        75 ~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~----~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~  150 (199)
                      +||||+..+++||+||.|+++|.+||+++||+.|.|+||+++....    -....+.+.|+|+|.+++++.|+.||++  
T Consensus        83 ~adtI~~~~~~Iyekp~d~~~a~~~l~rl~~~~~~v~t~v~l~~~~~~~g~~~~~~~d~t~VyF~eIpee~ie~yV~s--  160 (209)
T KOG1509          83 SADTITTDGGEIYEKPVDKKDAKRMLKRLSGRPHSVFTGVALIHCSSQLGTRVSEFYDETKVYFGEIPEEVIEEYVDS--  160 (209)
T ss_pred             CCCEEEEECCEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEECCEEEEEEEECCCCHHHHHHHHHC--
T ss_conf             122799736478337897357899998752787420466899974045771330331234788155989999999875--


Q ss_pred             CCCCCCCCEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             886733210000122332100011897532227699999999978
Q gi|254780813|r  151 KKALLSVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIE  195 (199)
Q Consensus       151 ~~~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~  195 (199)
                      ++|+++||||+||+.|+.||++|+||++||||||+..+.+.|.+.
T Consensus       161 G~~lkkAGgy~Iq~~ga~lI~~I~Gd~~nVvGLPl~~t~K~l~~~  205 (209)
T KOG1509         161 GEPLKKAGGYGIQGLGAPLIESVVGDFDNVVGLPLELTEKLLNKV  205 (209)
T ss_pred             CCCHHHCCCEECCCCCCHHEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             873211221011445400123102674330147289999999998


No 30 
>cd00985 Maf_Ham1 Maf_Ham1. Maf, a nucleotide binding protein, has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides, such as hypoxanthine/xanthine NTP, but not standard nucleotides.
Probab=99.96  E-value=1.2e-29  Score=204.75  Aligned_cols=122  Identities=30%  Similarity=0.347  Sum_probs=115.9

Q ss_pred             EEECCCCHHHHHHHHHCC-CCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCC
Q ss_conf             474269989999999789-8859975898843242201344579989998887654333210137754034134431012
Q gi|254780813|r    5 IILASSSLSRRKLLQNSG-IQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLG   83 (199)
Q Consensus         5 iILAS~S~~R~~lL~~~g-i~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~   83 (199)
                      |||||+||+|+++|+++| ++|++++|++||+..+.        .|.+++.++|..||++++..+++.+||+|||+++++
T Consensus         1 iiLAS~S~~R~~~l~~~~~~~~~~~~~~idE~~~~~--------~~~~~~~~~A~~KA~~v~~~~~~~~vi~~DT~v~~~   72 (131)
T cd00985           1 LILASGSPRRLEELKQIGGIEFEVLPSDIDETGLKG--------EPEDTVEELALLKARAVAERLPDAPVIADDTGLVVD   72 (131)
T ss_pred             CEEECCCHHHHHHHHHCCCCCEEEECCCCCCCCCCC--------CHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEC
T ss_conf             999679989999999668999599679989888888--------989999999999998889777996599616368889


Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEEC
Q ss_conf             344676100134699999851980378886653037861004687411001
Q gi|254780813|r   84 SSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTM  134 (199)
Q Consensus        84 g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f  134 (199)
                      |++++||.+.++|++||+.+||++|+++||+|++.+++.++.+...|+++|
T Consensus        73 g~i~~Kp~~~~~a~~~L~~lsgr~h~~~t~v~l~~~~~~~~~~~~~~~~~i  123 (131)
T cd00985          73 GRPGGKPARFAEALEMLRGLSGRTAEFVTAVALVDPDGKIITFEGETEGKI  123 (131)
T ss_pred             CEECCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEEEEE
T ss_conf             987348999999999887615886999999999948998999999999999


No 31 
>PRK00120 putative deoxyribonucleotide triphosphate pyrophosphatase; Reviewed
Probab=96.47  E-value=0.029  Score=35.06  Aligned_cols=114  Identities=23%  Similarity=0.219  Sum_probs=64.7

Q ss_pred             CCCCEEECCCCHHHH----HHHHHCCCCCEEEC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             987547426998999----99997898859975-8988432422013445799899988876543332101377540341
Q gi|254780813|r    1 MIKNIILASSSLSRR----KLLQNSGIQFSVVK-PNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIG   75 (199)
Q Consensus         1 m~~~iILAS~S~~R~----~lL~~~gi~f~~~~-~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~   75 (199)
                      ||++|++||+-+...    ++|..+|++  +++ .+++-..+++     .+.+.    ...|..||+.++... +..||+
T Consensus         1 Mm~ki~~aT~N~~K~~E~~~il~~~~~~--i~~~~d~~~~e~~E-----~g~t~----~eNA~~KA~~~~~~~-~~pvla   68 (197)
T PRK00120          1 MMKKLVLASHNAGKLRELAALLAPFGLE--VVSQGELGLPEPEE-----TGLTF----VENALIKARHAAKAT-GLPALA   68 (197)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCE--EEEHHHCCCCCCCC-----CCCCH----HHHHHHHHHHHHHHH-CCCEEE
T ss_conf             9863999929867999999988765988--97578869999888-----89779----999999999999874-897797


Q ss_pred             HHHHHC---CCCC--CC-----CCC-CHHHHHHHHHHHHCC-----CCEEEEEEEEECCCCCCCEEE
Q ss_conf             344310---1234--46-----761-001346999998519-----803788866530378610046
Q gi|254780813|r   76 CDQTMS---LGSS--IY-----HKP-VDMLEAEKNLLRISG-----KKHRISSAYVLVQNGKVLRHH  126 (199)
Q Consensus        76 aDtvv~---~~g~--i~-----~KP-~~~~eA~~~L~~lsg-----~~h~v~T~~~i~~~~~~~~~~  126 (199)
                      =||=+.   ++|.  ++     |+. .+.+.....|..+.+     ++.++.|.++++.+++.+..+
T Consensus        69 DDSGL~i~aL~g~PGvySar~ag~~~~d~~~~~~ll~~l~~~~~~~r~A~f~~~i~~~~~~~~~~~f  135 (197)
T PRK00120         69 DDSGLAVDALGGAPGVYSARYAGEHGNDAANNEKLLEELRDVPDEDRSARFVCVLVLAWPDGHPLVA  135 (197)
T ss_pred             CCCEEEEHHHCCCCCCCEEEHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEE
T ss_conf             1467998331499983111044427889999999999975688555449999999999579818999


No 32 
>cd00515 HAM1 NTPase/HAM1.  This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides such as XTP to XMP and ITP to IMP, but not the standard nucleotides, in the presence of Mg or Mn ions. The enzyme exists as a homodimer. The HAM1 protein may be acting as an NTPase by hydrolyzing the HAP triphosphate.
Probab=95.33  E-value=0.18  Score=30.22  Aligned_cols=107  Identities=19%  Similarity=0.145  Sum_probs=62.6

Q ss_pred             EEECCCCHHHH----HHHHHCCCCCEEEC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHH
Q ss_conf             47426998999----99997898859975--8988432422013445799899988876543332101377540341344
Q gi|254780813|r    5 IILASSSLSRR----KLLQNSGIQFSVVK--PNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQ   78 (199)
Q Consensus         5 iILAS~S~~R~----~lL~~~gi~f~~~~--~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDt   78 (199)
                      |++||+-+...    ++|..+++++...+  +++.|..          .+    -...|..||+.++.... ..+|+=||
T Consensus         1 i~~aT~N~~K~~E~~~~l~~~~i~i~~~~~~~~~~E~~----------~t----~~enA~~Ka~~~~~~~~-~~~iaDDS   65 (183)
T cd00515           1 IVFATGNKGKLKEFKEILAPFGIEVVSLKDIIDIEETG----------ST----FEENALLKARAAAEALG-LPVLADDS   65 (183)
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC----------CC----HHHHHHHHHHHHHHHHC-CCEEEECC
T ss_conf             99990887899999998855497798546578998888----------89----99999999999999838-98698420


Q ss_pred             HHC---CCCC--C----CCCC-CHHHHHHHHHHHHC---CCCEEEEEEEEECCCCCCCEEE
Q ss_conf             310---1234--4----6761-00134699999851---9803788866530378610046
Q gi|254780813|r   79 TMS---LGSS--I----YHKP-VDMLEAEKNLLRIS---GKKHRISSAYVLVQNGKVLRHH  126 (199)
Q Consensus        79 vv~---~~g~--i----~~KP-~~~~eA~~~L~~ls---g~~h~v~T~~~i~~~~~~~~~~  126 (199)
                      =+.   ++|.  +    +.++ .+.+.....|+.+.   +++.++.|.+|++.+++.+..+
T Consensus        66 GL~v~aL~g~PGvysar~~~~~~d~~~~~~ll~~l~~~~~r~A~f~~~l~~~~~~~~~~~f  126 (183)
T cd00515          66 GLCVDALNGFPGVYSARFAGEHDDAENNEKLLELLEGDEDRSAYFVCVIALVDPDGEPLVF  126 (183)
T ss_pred             HHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCEEEE
T ss_conf             4579987599972127775447879999999997155457539999999999569958999


No 33 
>COG0127 Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]
Probab=89.72  E-value=1.9  Score=23.84  Aligned_cols=113  Identities=21%  Similarity=0.185  Sum_probs=68.4

Q ss_pred             CCCEEECCCCHHHHH----HHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHH
Q ss_conf             875474269989999----9997898859975898843242201344579989998887654333210137754034134
Q gi|254780813|r    2 IKNIILASSSLSRRK----LLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCD   77 (199)
Q Consensus         2 ~~~iILAS~S~~R~~----lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aD   77 (199)
                      |++|++||+-+-...    +|...|+++......-+|-.+         ......-...|..||+.++.. .+..+|+=|
T Consensus         1 ~~ki~~AT~N~~K~~E~~~il~~~~~ei~~~~~~~~~~e~---------eEtg~tf~enA~~Ka~~~a~~-~g~pviaDD   70 (194)
T COG0127           1 MMKIVLATGNKGKLRELKSILAPGGIEIESLKELGVEIEV---------EETGLTFEENALLKARAAAKA-TGLPVIADD   70 (194)
T ss_pred             CCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCC---------HHHHHHHHHHHHHHHHHHHHH-CCCCEEEEC
T ss_conf             9479998598677999999855048336872445787880---------004568999999999999740-399589965


Q ss_pred             HHHC---CCCC--C-----CCCCCHHHHHHHHHHHHCC---CCEEEEEEEEECCCCCCCE
Q ss_conf             4310---1234--4-----6761001346999998519---8037888665303786100
Q gi|254780813|r   78 QTMS---LGSS--I-----YHKPVDMLEAEKNLLRISG---KKHRISSAYVLVQNGKVLR  124 (199)
Q Consensus        78 tvv~---~~g~--i-----~~KP~~~~eA~~~L~~lsg---~~h~v~T~~~i~~~~~~~~  124 (199)
                      |=+.   ++|-  +     .+...|.......|+.+++   |+.++.|.+++..++....
T Consensus        71 SGL~v~aL~G~PGvYSar~~~~~~d~~~~~klL~~l~~~~~R~A~F~~vi~~~~~~~~~~  130 (194)
T COG0127          71 SGLCVDALNGFPGVYSARFAGEADDTIGNEKLLKLLEGVPDRSAYFVCVIVLARDGGEPI  130 (194)
T ss_pred             CCEEEECCCCCCCCEEEHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCEE
T ss_conf             834771137998402201114676134399999983478777089999999980899479


No 34 
>pfam01725 Ham1p_like Ham1 family. This family consists of the HAM1 protein and hypothetical archaeal bacterial and C. elegans proteins. HAM1 controls 6-N-hydroxylaminopurine (HAP) sensitivity and mutagenesis in S. cerevisiae HAM1. The HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions.
Probab=86.43  E-value=3  Score=22.55  Aligned_cols=106  Identities=13%  Similarity=0.113  Sum_probs=61.1

Q ss_pred             EEECCCCHHHH----HHHHHCCCCCEEE---CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHH
Q ss_conf             47426998999----9999789885997---5898843242201344579989998887654333210137754034134
Q gi|254780813|r    5 IILASSSLSRR----KLLQNSGIQFSVV---KPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCD   77 (199)
Q Consensus         5 iILAS~S~~R~----~lL~~~gi~f~~~---~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aD   77 (199)
                      |++||+-+...    .+|..++++....   ..++.|.          +.+.    ...|..||+.+.+... ..+|+-|
T Consensus         1 I~~aT~N~~K~~E~~~~l~~~~i~~~~l~~~~~~~~E~----------~~t~----~enA~~Ka~~~~~~~~-~p~iaDD   65 (181)
T pfam01725         1 IVFATGNKGKLKEIKAILGDLGIEVIDLKHDPIEVEET----------GDTF----EENALLKAKAAAKALG-KPVLADD   65 (181)
T ss_pred             CEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC----------CCCH----HHHHHHHHHHHHHHHC-CCEEEEC
T ss_conf             99994888899999998856496587411268898888----------8899----9999999999999708-9779824


Q ss_pred             HHHCC---CCC--CCCCC----CHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEE
Q ss_conf             43101---234--46761----00134699999851980378886653037861004
Q gi|254780813|r   78 QTMSL---GSS--IYHKP----VDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRH  125 (199)
Q Consensus        78 tvv~~---~g~--i~~KP----~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~  125 (199)
                      |=..+   +|.  ++.+.    .+.+.-.++|+....++.++.|.+|++.+++.+..
T Consensus        66 SGL~i~aL~g~PGi~sar~~~~~~~~~ll~~l~~~~~r~A~f~~~l~~~~~~~~~~~  122 (181)
T pfam01725        66 SGLCVDALNGFPGVYSARFADTLNNEKLLELLEGVEDRSAYFVCVIALADPDGKVLV  122 (181)
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCEEE
T ss_conf             067899875997314099987600778999807998875999999999938995899


No 35 
>TIGR01139 cysK cysteine synthase A; InterPro: IPR005859    This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded.    Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=85.79  E-value=2.2  Score=23.46  Aligned_cols=163  Identities=17%  Similarity=0.226  Sum_probs=96.6

Q ss_pred             CCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCC
Q ss_conf             26998999999978988599758988432422013445799899988876543332101377540341344310123446
Q gi|254780813|r    8 ASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIY   87 (199)
Q Consensus         8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~   87 (199)
                      .|=|.=||.||+.+|-+...-                    |...-+.=|..||+.+.+..|+.+++- -   -|++--=
T Consensus        91 etMS~ERr~lL~ayGAeLvLT--------------------pg~~GMkGAI~KA~Ei~~~~Pn~y~m~-~---QF~NpAN  146 (312)
T TIGR01139        91 ETMSIERRKLLKAYGAELVLT--------------------PGAEGMKGAIAKAEEIAESTPNSYFML-Q---QFENPAN  146 (312)
T ss_pred             CCHHHHHHHHHHHCCCEEEEC--------------------CCCCCCHHHHHHHHHHHHHCCCCEEEC-C---CCCCCCH
T ss_conf             432689999998709658872--------------------812376667899999998687926522-4---5787221


Q ss_pred             CCCCHHHHHHHHHHHHCCC-CEE-EEEEE----EECCCCCCCEEEE----EEEEEECCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             7610013469999985198-037-88866----5303786100468----741100122205789999962068867332
Q gi|254780813|r   88 HKPVDMLEAEKNLLRISGK-KHR-ISSAY----VLVQNGKVLRHHI----SVAQLTMYKLSEEFIKFYLNKIGKKALLSV  157 (199)
Q Consensus        88 ~KP~~~~eA~~~L~~lsg~-~h~-v~T~~----~i~~~~~~~~~~~----~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~a  157 (199)
                      -.-+-..-|.+.|+++-|+ ... ++.|+    +|---++.++..-    +.+.|=.-+..-..|.-=++  ..+.  +.
T Consensus       147 P~~Hr~TTg~EIw~d~dg~G~~D~FVaG~GTGGTITGvG~~LK~~~pkG~~~~~~AVEP~~SPVLSggLA--G~~i--kp  222 (312)
T TIGR01139       147 PEIHRKTTGPEIWRDTDGKGRLDAFVAGVGTGGTITGVGEVLKEKKPKGKDIKIVAVEPAESPVLSGGLA--GEEI--KP  222 (312)
T ss_pred             HHHHHHCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH--HHHC--CC
T ss_conf             4761620278999962789831179973236851547899874007899558999872774313443330--0102--66


Q ss_pred             CEECCCCCHHHHHHEE-C-CCCCCCCCCC---HHHHHH-HHHHCCCC
Q ss_conf             1000012233210001-1-8975322276---999999-99978989
Q gi|254780813|r  158 GSYQIDKEGIQLFSSI-K-GSYFSIVGLP---IIELIN-DLKIEKVI  198 (199)
Q Consensus       158 G~y~ie~~g~~~i~~I-~-Gd~~~V~GLP---i~~l~~-~L~~~gii  198 (199)
                      |.=+|||.|+-||=.| + -=|+-|+...   -+++.+ +-+++||+
T Consensus       223 GpHKIQGiGAGFIP~~Ln~~v~D~vi~V~~EeAi~~ARrLA~eEGiL  269 (312)
T TIGR01139       223 GPHKIQGIGAGFIPKVLNRSVIDEVITVSDEEAIETARRLAKEEGIL  269 (312)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCEE
T ss_conf             94964127978726336841362147407556899999999867801


No 36 
>TIGR00212 hemC porphobilinogen deaminase; InterPro: IPR000860   Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin .   The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA.   The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III.   Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) .   This entry represents hydroxymethylbilane synthase (or porphobilinogen deaminase, 2.5.1.61 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain . The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis , . A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) . ; GO: 0004418 hydroxymethylbilane synthase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=77.71  E-value=2.1  Score=23.54  Aligned_cols=112  Identities=21%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             EEECCCCHHHHHHHHHCCCCCEEECC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-----CCCCCCC-----
Q ss_conf             47426998999999978988599758--98843242201344579989998887654333210-----1377540-----
Q gi|254780813|r    5 IILASSSLSRRKLLQNSGIQFSVVKP--NIDEREMEKKMDFSERKRPEKIALILAEKKALEVS-----NRYPESF-----   72 (199)
Q Consensus         5 iILAS~S~~R~~lL~~~gi~f~~~~~--~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~-----~~~~~~~-----   72 (199)
                      -+.|+||+||+..|+..--++++.+-  |||=+--|-.    .+.....+++.-|=.|-....     ..+..+.     
T Consensus       121 A~vGTSS~RR~aql~~~RPDl~~~~lRGNi~TRl~Kl~----~Gg~~DAiiLA~AGL~RLg~~~~~i~~~~~~~~~~PA~  196 (312)
T TIGR00212       121 AKVGTSSLRRKAQLKALRPDLEIEPLRGNIDTRLRKLD----EGGEYDAIILAAAGLKRLGLENDVITEVLDPEVMLPAV  196 (312)
T ss_pred             CEEECCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHC----CCCCCHHHHHHHHHHHCCCCCCHHHHHCCCHHHCCCCC
T ss_conf             88974579999999830899449974698799999851----88820489998887530254101343147811417886


Q ss_pred             ---EEC-----HHHHH-CCCCCCCCCCCHHHH--HHHHHHHHCCCCEEEEEEEEECCCC
Q ss_conf             ---341-----34431-012344676100134--6999998519803788866530378
Q gi|254780813|r   73 ---VIG-----CDQTM-SLGSSIYHKPVDMLE--AEKNLLRISGKKHRISSAYVLVQNG  120 (199)
Q Consensus        73 ---VI~-----aDtvv-~~~g~i~~KP~~~~e--A~~~L~~lsg~~h~v~T~~~i~~~~  120 (199)
                         +||     -||-+ ..=.+|-+++....-  =+.+|+.|-|-.|.-+.+++-+.+.
T Consensus       197 GQG~i~ve~R~dD~~~~~il~~i~h~~t~~~~~aER~fL~~L~GgC~~Pig~~a~~~~~  255 (312)
T TIGR00212       197 GQGAIAVECRKDDTEIKEILKEINHEETAVEVTAERAFLKELDGGCQTPIGAYAEYEGD  255 (312)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
T ss_conf             67579999845877999986202888899999999999987288964331468898337


No 37 
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=69.75  E-value=3.8  Score=21.98  Aligned_cols=155  Identities=15%  Similarity=0.171  Sum_probs=78.4

Q ss_pred             CCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCC
Q ss_conf             26998999999978988599758988432422013445799899988876543332101377540341344310123446
Q gi|254780813|r    8 ASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIY   87 (199)
Q Consensus         8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~   87 (199)
                      .+.|+-|+++|+.+|=+....+.  ++..                 ..-+..||+...+..|+. .+-.||        |
T Consensus        94 ~~~S~er~~~l~a~GAevi~t~~--~~g~-----------------~~~a~~~a~el~~~~p~~-~~~~~Q--------f  145 (300)
T COG0031          94 ETMSQERRKLLRALGAEVILTPG--APGN-----------------MKGAIERAKELAAEIPGY-AVWLNQ--------F  145 (300)
T ss_pred             CCCCHHHHHHHHHCCCEEEECCC--CCCC-----------------HHHHHHHHHHHHHHCCCC-EECHHH--------C
T ss_conf             98999999999982998998379--8774-----------------599999999999749883-675534--------3


Q ss_pred             CCCCHH-----HHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCC--CEE
Q ss_conf             761001-----3469999985198037888665303786100468741100122205789999962068867332--100
Q gi|254780813|r   88 HKPVDM-----LEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSV--GSY  160 (199)
Q Consensus        88 ~KP~~~-----~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~a--G~y  160 (199)
                      +-|.|.     -.+.+.|..+.|+--.++.|+=   .+..+ ..+  ++ ++|.-..+ +.-+.-...+.++...  |.+
T Consensus       146 ~NpaN~~aH~~tT~~EI~~~~~~~~d~fVagvG---TGGTi-tGv--ar-~Lk~~~p~-i~iv~vdP~~S~~~~~G~g~~  217 (300)
T COG0031         146 ENPANPEAHYETTGPEIWQQTDGKVDAFVAGVG---TGGTI-TGV--AR-YLKERNPN-VRIVAVDPEGSVLLSGGEGPH  217 (300)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC---CCHHH-HHH--HH-HHHHHCCC-CEEEEECCCCCCCCCCCCCCC
T ss_conf             896478989761289999973799998999378---52658-999--99-99862898-379997778885557998886


Q ss_pred             CCCCCHHHHHHEEC--CCCCCCCCCCH----HHHHHHHHHCCCC
Q ss_conf             00122332100011--89753222769----9999999978989
Q gi|254780813|r  161 QIDKEGIQLFSSIK--GSYFSIVGLPI----IELINDLKIEKVI  198 (199)
Q Consensus       161 ~ie~~g~~~i~~I~--Gd~~~V~GLPi----~~l~~~L~~~gii  198 (199)
                      +|||.|..|+..+-  .-++.|+-.+-    .....+.+++|+.
T Consensus       218 ~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGi~  261 (300)
T COG0031         218 KIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLL  261 (300)
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCEE
T ss_conf             27777988677324643360599978799999999999983912


No 38 
>pfam01379 Porphobil_deam Porphobilinogen deaminase, dipyromethane cofactor binding domain.
Probab=67.29  E-value=5.6  Score=20.93  Aligned_cols=61  Identities=16%  Similarity=0.243  Sum_probs=28.0

Q ss_pred             HHHHHC--CCCCEE--ECCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHH-------HHHHCCCCCCCEECH
Q ss_conf             999978--988599--7589884324220134-457998999888765433-------321013775403413
Q gi|254780813|r   16 KLLQNS--GIQFSV--VKPNIDEREMEKKMDF-SERKRPEKIALILAEKKA-------LEVSNRYPESFVIGC   76 (199)
Q Consensus        16 ~lL~~~--gi~f~~--~~~~iDE~~~~~~~~~-~~~~~p~~~~~~lA~~Ka-------~~v~~~~~~~~VI~a   76 (199)
                      +.|++.  +++|++  +...-|......-... ..+.-..++-..|-..++       +++....++.+.|+|
T Consensus        21 ~~L~~~~p~~~~ei~~i~T~GD~~~~~~l~~~ggkG~Ftkele~aLl~~~iDiAVHS~KDlP~~~~~~l~i~a   93 (213)
T pfam01379        21 EKLKELCPDIEVEIVIIKTTGDKILDKPLAKIGGKGLFTKELEEALLNGEIDLAVHSLKDVPTELPEGLVLGA   93 (213)
T ss_pred             HHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEE
T ss_conf             9999868998689999978784436665311698414269999999709878787604657764798746876


No 39 
>TIGR01136 cysKM cysteine synthases; InterPro: IPR005856    This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded.    Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=66.70  E-value=11  Score=19.16  Aligned_cols=147  Identities=18%  Similarity=0.243  Sum_probs=86.3

Q ss_pred             CCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCC
Q ss_conf             26998999999978988599758988432422013445799899988876543332101377540341344310123446
Q gi|254780813|r    8 ASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIY   87 (199)
Q Consensus         8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~   87 (199)
                      .|-|.=||++|+.+|=++...++                    +.-+.=|..||+.+.+++|+..++- ||   |+|--=
T Consensus        94 etmS~ERr~~l~ayGA~L~LT~~--------------------~~GM~GAi~kA~el~~~~p~~~~~l-~Q---F~NpaN  149 (315)
T TIGR01136        94 ETMSLERRKLLKAYGAELILTPA--------------------EEGMKGAIDKAEELAAETPNKYVML-DQ---FENPAN  149 (315)
T ss_pred             CCHHHHHHHHHHHCCCEEEEECC--------------------CCCCHHHHHHHHHHHHHCCCCEEEC-CC---CCCCCH
T ss_conf             87178999999870966988373--------------------3575778999999998588962103-32---588521


Q ss_pred             CCCCHHHHHHHHHHHHCCC-CEEEEEEE----EECCCCCCCEEEEEE-EEEE---CCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             7610013469999985198-03788866----530378610046874-1100---1222057899999620688673321
Q gi|254780813|r   88 HKPVDMLEAEKNLLRISGK-KHRISSAY----VLVQNGKVLRHHISV-AQLT---MYKLSEEFIKFYLNKIGKKALLSVG  158 (199)
Q Consensus        88 ~KP~~~~eA~~~L~~lsg~-~h~v~T~~----~i~~~~~~~~~~~~~-t~v~---f~~l~~~~I~~Yi~~~~~~~~~~aG  158 (199)
                      -+-+-..-+-+.|+++-|+ .|+| +|+    +|.--++.++...-. +.|+   ..+-.-..|-.=++  ..+.  +.|
T Consensus       150 p~~H~~TTGpEIw~dt~G~id~FV-aG~GTGGTItGvgr~LK~~~pkG~~i~i~avEP~~s~~Ls~GLA--G~~i--~pG  224 (315)
T TIGR01136       150 PEAHRKTTGPEIWRDTDGRIDHFV-AGVGTGGTITGVGRVLKEQNPKGKNIQIVAVEPAESPVLSGGLA--GEEI--KPG  224 (315)
T ss_pred             HHHHHCCCHHHHHHHCCCCEEEEE-EECCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHC--CCCC--CCC
T ss_conf             476230565799973289235899-71156751116898986326899617999975687301001112--2223--679


Q ss_pred             EECCCCCHHHHHHEEC--CCCCCCCCC
Q ss_conf             0000122332100011--897532227
Q gi|254780813|r  159 SYQIDKEGIQLFSSIK--GSYFSIVGL  183 (199)
Q Consensus       159 ~y~ie~~g~~~i~~I~--Gd~~~V~GL  183 (199)
                      -=+|||.|.-||=.|=  -=++.|+-.
T Consensus       225 pHKIqgig~gFiP~iLd~~~~D~v~~V  251 (315)
T TIGR01136       225 PHKIQGIGAGFIPKILDRSLIDEVITV  251 (315)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf             287778885557631371133104641


No 40 
>PRK01066 porphobilinogen deaminase; Provisional
Probab=64.67  E-value=6.3  Score=20.60  Aligned_cols=59  Identities=12%  Similarity=0.078  Sum_probs=25.1

Q ss_pred             CEEECCCCHH--------HHHHHHH--CCCCCEE--ECCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHH
Q ss_conf             5474269989--------9999997--8988599--758988432422013-44579989998887654333
Q gi|254780813|r    4 NIILASSSLS--------RRKLLQN--SGIQFSV--VKPNIDEREMEKKMD-FSERKRPEKIALILAEKKAL   62 (199)
Q Consensus         4 ~iILAS~S~~--------R~~lL~~--~gi~f~~--~~~~iDE~~~~~~~~-~~~~~~p~~~~~~lA~~Ka~   62 (199)
                      +|.+||-+..        -++.|+.  -+++|++  +...-|......-.. -..+.-..++-..|-..++.
T Consensus        20 ~IrIGTR~S~LAl~Qa~~V~~~L~~~~p~~~~ei~~i~T~GD~~~~~~L~~iggkG~Ftkele~aLl~g~iD   91 (234)
T PRK01066         20 PLRIASRKSPLAKAQVHECLRLLRSFFPKLWFQISTTTTQGDLDQKTPLHLVENTGFFTDDVDFLVLSGKCD   91 (234)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHCCCCCEEHHHHHHHHHCCCCC
T ss_conf             469995887999999999999999768997399999963373145776877489745489999999769877


No 41 
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=60.46  E-value=14  Score=18.51  Aligned_cols=63  Identities=21%  Similarity=0.142  Sum_probs=46.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             9989998887654333210137754034134431012344676100134699999851980378
Q gi|254780813|r   47 KRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRI  110 (199)
Q Consensus        47 ~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v  110 (199)
                      -.|.+.++..|.+.++-....+.+-.++..|+ -.++-++++|+.+.+++.++|...-|-.-.+
T Consensus       287 G~~e~~AKAvalAl~~~alaenR~~~~~lF~s-~~~~~el~~k~~~~~e~i~fL~~~f~GGTD~  349 (437)
T COG2425         287 GFKEQWAKAVALALMRIALAENRDCYVILFDS-EVIEYELYEKKIDIEELIEFLSYVFGGGTDI  349 (437)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCEEEEEECC-CCEEEEECCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf             82889999999999999988430538999525-2025550577457999999996506898885


No 42 
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=59.94  E-value=5.2  Score=21.13  Aligned_cols=48  Identities=27%  Similarity=0.332  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHEECCCCCCCCCCCHHH
Q ss_conf             5789999962068867332100001223321000118975322276999
Q gi|254780813|r  139 EEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIE  187 (199)
Q Consensus       139 ~~~I~~Yi~~~~~~~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~  187 (199)
                      +++|..|+.. ....+.-||||++=|.-..=...++|....+-|||+..
T Consensus       315 d~~i~~~~~~-~~~viGICGG~QmLG~~i~Dp~g~Eg~~~~~~GLgLld  362 (486)
T COG1492         315 DEKILEYARK-GGDVIGICGGYQMLGRRLKDPSGIEGAKGEAEGLGLLD  362 (486)
T ss_pred             HHHHHHHHHC-CCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE
T ss_conf             9999999747-99799986357764334148644457634337856257


No 43 
>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12.  HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB).  HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II.  HMBS is found in all organisms except viruses.
Probab=58.31  E-value=7.8  Score=20.01  Aligned_cols=112  Identities=21%  Similarity=0.279  Sum_probs=52.8

Q ss_pred             CEEECCCCHHHHHHHHHCCCCCEE--ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH----HCCCC-C------
Q ss_conf             547426998999999978988599--7589884324220134457998999888765433321----01377-5------
Q gi|254780813|r    4 NIILASSSLSRRKLLQNSGIQFSV--VKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEV----SNRYP-E------   70 (199)
Q Consensus         4 ~iILAS~S~~R~~lL~~~gi~f~~--~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v----~~~~~-~------   70 (199)
                      .-+.|++|+||+..|+...-+..+  +-=|+|-+--|-...  +. +  -++...|-.+-...    ...++ +      
T Consensus       117 ga~IGTSS~RR~aql~~~~pdl~i~~iRGNV~TRl~KL~~g--~~-D--aiILA~AGL~RLgl~~~i~~~l~~~~~~PA~  191 (292)
T cd00494         117 GSVVGTSSLRRQAQLKRKRPDLKFEPLRGNVDTRLRKLDEG--EY-D--AIILAAAGLKRLGLEDRITQYLSPEVMLPAV  191 (292)
T ss_pred             CCEEEECCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHCC--CC-C--EEEEHHHHHHHCCCCCCCCCCCCHHCCCCCC
T ss_conf             98785147437999998689995467658899999985167--87-4--7754465675547842023003631078876


Q ss_pred             ---CCEECH---HH-HHCCCCCCCCCCCHHHH---HHHHHHHHCCCCEEEEEEEEECCCCC
Q ss_conf             ---403413---44-31012344676100134---69999985198037888665303786
Q gi|254780813|r   71 ---SFVIGC---DQ-TMSLGSSIYHKPVDMLE---AEKNLLRISGKKHRISSAYVLVQNGK  121 (199)
Q Consensus        71 ---~~VI~a---Dt-vv~~~g~i~~KP~~~~e---A~~~L~~lsg~~h~v~T~~~i~~~~~  121 (199)
                         .+-|-|   |+ +...=. -++-+.+..+   -+.+|+.|.|-.|.-+.+.+-+.++.
T Consensus       192 gQGaiave~r~~d~~~~~~l~-~in~~~t~~~~~aER~~l~~l~ggC~~Piga~a~i~~~~  251 (292)
T cd00494         192 GQGALAIECRKGDEELLALLK-PLNHEETALCVLAERAFLRELEGGCQVPIGVYAELDGGE  251 (292)
T ss_pred             CCCEEEEEEECCCHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf             653068887248988888887-755878899999999999984899998458899996998


No 44 
>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism]
Probab=57.55  E-value=8.5  Score=19.79  Aligned_cols=113  Identities=23%  Similarity=0.287  Sum_probs=58.1

Q ss_pred             EEECCCCHHHHHHHHHCCCCCEE--ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----CC-CC-------
Q ss_conf             47426998999999978988599--758988432422013445799899988876543332101----37-75-------
Q gi|254780813|r    5 IILASSSLSRRKLLQNSGIQFSV--VKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSN----RY-PE-------   70 (199)
Q Consensus         5 iILAS~S~~R~~lL~~~gi~f~~--~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~----~~-~~-------   70 (199)
                      -+.||+|.||+..|+....++++  +-=|+|-+.-|-.    .+ .-..+++.-|-.|-.-...    .+ |+       
T Consensus       121 a~VGTSSlRR~aql~~~rPdl~i~~lRGNVdTRL~KL~----~g-~yDAIILA~AGL~RLgl~~~~~~~l~p~~~~PA~g  195 (307)
T COG0181         121 AVVGTSSLRRQAQLKALRPDLKIEPLRGNVDTRLRKLD----EG-EYDAIILAAAGLKRLGLENRITEILDPEEFLPAPG  195 (307)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH----CC-CCCHHHHHHHHHHHCCCCCCCEEECCHHHCCCCCC
T ss_conf             83145268799999986999769966576888999861----67-85299999999986287422206347542689888


Q ss_pred             CCEEC--H---HH-HHCCCCCCCCCCCHHHH---HHHHHHHHCCCCEEEEEEEEECCCCCCC
Q ss_conf             40341--3---44-31012344676100134---6999998519803788866530378610
Q gi|254780813|r   71 SFVIG--C---DQ-TMSLGSSIYHKPVDMLE---AEKNLLRISGKKHRISSAYVLVQNGKVL  123 (199)
Q Consensus        71 ~~VI~--a---Dt-vv~~~g~i~~KP~~~~e---A~~~L~~lsg~~h~v~T~~~i~~~~~~~  123 (199)
                      .=.|+  |   |. +...=. -+..+.+..+   -+.+|+.|-|-.|.-+.+.+.+..+..+
T Consensus       196 QGal~ie~R~~d~~~~~ll~-~i~~~~t~~~v~aERa~l~~L~ggC~~PIg~~a~~~~~~~l  256 (307)
T COG0181         196 QGALAIECRAGDEKVLELLA-ELNDEDTRICVTAERAFLRELEGGCQVPIGAYAELTGGGEL  256 (307)
T ss_pred             CCEEEEEEECCCHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEE
T ss_conf             86699999639678999998-61582088999999999996289987712888998589739


No 45 
>PRK02491 putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein; Reviewed
Probab=56.99  E-value=18  Score=17.83  Aligned_cols=105  Identities=20%  Similarity=0.277  Sum_probs=63.1

Q ss_pred             CCEEECCCCHHH----HHHHHHCCCCCEEEC-----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             754742699899----999997898859975-----89884324220134457998999888765433321013775403
Q gi|254780813|r    3 KNIILASSSLSR----RKLLQNSGIQFSVVK-----PNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFV   73 (199)
Q Consensus         3 ~~iILAS~S~~R----~~lL~~~gi~f~~~~-----~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~V   73 (199)
                      ..|+.|+.-+-.    +++|..+|+.+....     |+++|+          +.+    =...|..||+.+++.. +..+
T Consensus       128 dtilIAT~N~GK~kEf~~l~~~~g~~V~sL~D~pdlPEVeET----------G~T----FeENA~lKA~~~ak~t-G~pv  192 (328)
T PRK02491        128 DTILIATRNEGKTKEFRKLFGKLGYKVENLNDYPDLPEVAET----------GMT----FEENARLKAETISRLT-GKMV  192 (328)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCC----------CCC----HHHHHHHHHHHHHHHH-CCCE
T ss_conf             779998379656999999887549589788778999997787----------768----8999999999999987-9968


Q ss_pred             ECHHHHHC---CCCC--C----C-CCC-CHHHHHHHHHHHHC------CCCEEEEEEEEECCCCCC
Q ss_conf             41344310---1234--4----6-761-00134699999851------980378886653037861
Q gi|254780813|r   74 IGCDQTMS---LGSS--I----Y-HKP-VDMLEAEKNLLRIS------GKKHRISSAYVLVQNGKV  122 (199)
Q Consensus        74 I~aDtvv~---~~g~--i----~-~KP-~~~~eA~~~L~~ls------g~~h~v~T~~~i~~~~~~  122 (199)
                      |+=|+=++   ++|+  |    | |.. .|.+...+.|..|.      .++.++++++++..+++.
T Consensus       193 LADDSGL~VDAL~G~PGIySARyAG~~a~D~~N~~KLL~eL~~v~~~~~RsArFvCvLvla~pdg~  258 (328)
T PRK02491        193 LADDSGLKVDALGGLPGVWSARFSGPDATDAENNAKLLHELAMVFDQKDRSAQFHTTLVVAAPNKD  258 (328)
T ss_pred             EECCCCEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCC
T ss_conf             962776188104899872233415899999999999999865368877750899999999987999


No 46 
>PRK00072 hemC porphobilinogen deaminase; Reviewed
Probab=55.27  E-value=12  Score=18.94  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=19.1

Q ss_pred             EEECCCCHHHHHHHHHCCCCCEE--ECCCCCCCC
Q ss_conf             47426998999999978988599--758988432
Q gi|254780813|r    5 IILASSSLSRRKLLQNSGIQFSV--VKPNIDERE   36 (199)
Q Consensus         5 iILAS~S~~R~~lL~~~gi~f~~--~~~~iDE~~   36 (199)
                      -+.|++|+||+..|+.+.-+..+  +-=|+|-+-
T Consensus       122 a~IGTSS~RR~aql~~~~pdl~~~~iRGNv~TRl  155 (300)
T PRK00072        122 AVVGTSSLRRQAQLLALRPDLEIKDLRGNVDTRL  155 (300)
T ss_pred             CEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHH
T ss_conf             8885046508999998679995677668889999


No 47 
>KOG1252 consensus
Probab=54.26  E-value=8.4  Score=19.83  Aligned_cols=137  Identities=18%  Similarity=0.172  Sum_probs=73.6

Q ss_pred             CCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCC
Q ss_conf             26998999999978988599758988432422013445799899988876543332101377540341344310123446
Q gi|254780813|r    8 ASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIY   87 (199)
Q Consensus         8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~   87 (199)
                      ++-|.-|+.+|+.+|-.....++..-=            ..|     ..+..||..+.++.|++.+  +||--.-.+-. 
T Consensus       136 ~~ms~Ek~~~l~a~Gaeii~tp~a~~~------------~~~-----e~ai~~a~~l~~~~pna~~--l~Qf~np~Np~-  195 (362)
T KOG1252         136 EKMSKEKRILLRALGAEIILTPPAAGM------------KGP-----ESAIGKAEELLNKTPNAYI--LDQFHNPGNPL-  195 (362)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCHHHCC------------CCH-----HHHHHHHHHHHHHCCCHHH--HHHHCCCCCCC-
T ss_conf             245178999999718879956868724------------771-----8899999999986887387--88742888853-


Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEEEE----EECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCC
Q ss_conf             761001346999998519803788866----5303786100468741100122205789999962068867332100001
Q gi|254780813|r   88 HKPVDMLEAEKNLLRISGKKHRISSAY----VLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQID  163 (199)
Q Consensus        88 ~KP~~~~eA~~~L~~lsg~~h~v~T~~----~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y~ie  163 (199)
                        -+...-+-+.|..++|+--.+.-++    ++.--++-+....-.++|.--+-.+..+-.|...      +. -.|+||
T Consensus       196 --~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~------g~-~~~~I~  266 (362)
T KOG1252         196 --AHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKP------GP-TFHKIQ  266 (362)
T ss_pred             --CCCCCCCHHHHHHHCCCCCEEEECCCCCCEEEHHHHHHHHHCCCCEEEEECCCCCEEECCCCC------CC-CCCCCC
T ss_conf             --012564289999826997789962688850200668899758997799856873302047768------98-765400


Q ss_pred             CCHHHHHHEE
Q ss_conf             2233210001
Q gi|254780813|r  164 KEGIQLFSSI  173 (199)
Q Consensus       164 ~~g~~~i~~I  173 (199)
                      |.|.-|+..+
T Consensus       267 GIGyg~~p~~  276 (362)
T KOG1252         267 GIGYGFIPTT  276 (362)
T ss_pred             CCCCCCCCCC
T ss_conf             0245767642


No 48 
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=53.46  E-value=2.2  Score=23.37  Aligned_cols=53  Identities=19%  Similarity=0.274  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHH--EECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             578999996206886733210000122332100--01189753222769999999997
Q gi|254780813|r  139 EEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFS--SIKGSYFSIVGLPIIELINDLKI  194 (199)
Q Consensus       139 ~~~I~~Yi~~~~~~~~~~aG~y~ie~~g~~~i~--~I~Gd~~~V~GLPi~~l~~~L~~  194 (199)
                      +++|-+|.... +-.++-||||++  +|..+++  ++|++..++-||-|....-.+++
T Consensus       312 ~~~i~~~~~~i-g~V~GICGGYQ~--LG~~l~D~~~~E~~~~~~~GLgLLD~~T~f~~  366 (502)
T TIGR00313       312 AEEILDLAKEI-GIVIGICGGYQM--LGKELVDKEKVESDVGDVEGLGLLDAKTEFRE  366 (502)
T ss_pred             HHHHHHHHHCC-CEEEEECCCHHH--HHHHHCCCCCCCCCCCEECCCCCCCCEEEECC
T ss_conf             67999996069-889983476021--00310363222677100022212541456717


No 49 
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.49  E-value=11  Score=19.08  Aligned_cols=23  Identities=22%  Similarity=0.538  Sum_probs=20.2

Q ss_pred             HHHHHHCCCCCEEECCCCCCCCC
Q ss_conf             99999789885997589884324
Q gi|254780813|r   15 RKLLQNSGIQFSVVKPNIDEREM   37 (199)
Q Consensus        15 ~~lL~~~gi~f~~~~~~iDE~~~   37 (199)
                      .++|++.|+.|+-+|+.+|-=.+
T Consensus        22 L~IlE~~~IS~EHmPSGID~~si   44 (76)
T cd04911          22 LSILEDNGISYEHMPSGIDDISI   44 (76)
T ss_pred             HHHHHHCCCCEEECCCCCCEEEE
T ss_conf             99999839986455888660899


No 50 
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4)  to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=49.67  E-value=23  Score=17.11  Aligned_cols=79  Identities=19%  Similarity=0.255  Sum_probs=41.9

Q ss_pred             EECCCCHHHHHH---HHHCCCCCEEEC----CCCCCCCCCCC------CCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCC
Q ss_conf             742699899999---997898859975----89884324220------13445799899988876543332-10137754
Q gi|254780813|r    6 ILASSSLSRRKL---LQNSGIQFSVVK----PNIDEREMEKK------MDFSERKRPEKIALILAEKKALE-VSNRYPES   71 (199)
Q Consensus         6 ILAS~S~~R~~l---L~~~gi~f~~~~----~~iDE~~~~~~------~~~~~~~~p~~~~~~lA~~Ka~~-v~~~~~~~   71 (199)
                      =|.....||..+   +...|++|+.++    .+.++......      .......++.++++.++..++-. +.+..-+.
T Consensus         6 nL~~~~dR~~~~~~~~~~~~l~~~~~~Avdg~~~~~~~~~~~~~~~~~~~~~~~lt~gEigC~lSH~~~w~~~v~~~~~~   85 (128)
T cd06532           6 NLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKLWQKIVESNLEY   85 (128)
T ss_pred             ECCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHCCHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             89896899999999997769873588603410279999987430434430489887435789999999999999759983


Q ss_pred             CEECHHHHHCCCC
Q ss_conf             0341344310123
Q gi|254780813|r   72 FVIGCDQTMSLGS   84 (199)
Q Consensus        72 ~VI~aDtvv~~~g   84 (199)
                      .+|-=|=++...+
T Consensus        86 ~lIlEDDv~~~~~   98 (128)
T cd06532          86 ALILEDDAILDPD   98 (128)
T ss_pred             EEEEECCCEECCC
T ss_conf             9998178356799


No 51 
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=47.13  E-value=11  Score=19.16  Aligned_cols=97  Identities=21%  Similarity=0.329  Sum_probs=48.9

Q ss_pred             HHHHHHHHHCCCCCEE---ECCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHHCCCCCCCEECHHHHHCCCCC
Q ss_conf             8999999978988599---7589884324220134457998999888---765433321013775403413443101234
Q gi|254780813|r   12 LSRRKLLQNSGIQFSV---VKPNIDEREMEKKMDFSERKRPEKIALI---LAEKKALEVSNRYPESFVIGCDQTMSLGSS   85 (199)
Q Consensus        12 ~~R~~lL~~~gi~f~~---~~~~iDE~~~~~~~~~~~~~~p~~~~~~---lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~   85 (199)
                      .||++||+.|||.|..   +.=|+-=+.+-++.+ .-+.=...|-..   |-..+|.-|..-.|   -|.|.|=.+..-.
T Consensus       197 ~~Rr~if~~MGi~F~Ln~EvGrD~~l~~LLe~YD-AVFlGvGTY~~~~ggLP~eDa~GV~~ALP---FLianTr~lmGl~  272 (480)
T TIGR01318       197 SRRREIFTAMGIEFKLNTEVGRDISLDDLLEDYD-AVFLGVGTYRSMRGGLPGEDAPGVLKALP---FLIANTRQLMGLP  272 (480)
T ss_pred             HHHHHHHHHCCCEEECCCEEECCCCHHHHHHHCC-EEEEECCCCCCCCCCCCCCCCCCHHHHHH---HHHHCCCEECCCC
T ss_conf             9999999758927865816503255544431148-48961143343128778877421666424---7766152123788


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             467610013469999985198037888
Q gi|254780813|r   86 IYHKPVDMLEAEKNLLRISGKKHRISS  112 (199)
Q Consensus        86 i~~KP~~~~eA~~~L~~lsg~~h~v~T  112 (199)
                      -||+|..-=+-...|-.++||+.-|..
T Consensus       273 eyGrPiaGw~~~~P~~~~~Gk~VVVLG  299 (480)
T TIGR01318       273 EYGRPIAGWEPEEPLIDVEGKRVVVLG  299 (480)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             877744677766774234776689858


No 52 
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=45.25  E-value=27  Score=16.68  Aligned_cols=141  Identities=18%  Similarity=0.156  Sum_probs=69.9

Q ss_pred             HHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCC---C--
Q ss_conf             99999978988599758988432422013445799899988876543332101377540341344310123446---7--
Q gi|254780813|r   14 RRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIY---H--   88 (199)
Q Consensus        14 R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~---~--   88 (199)
                      -.+||+.++|++.+++.+-||..                 ..+.+.......+..|-.+++--+|.-.+..+.-   .  
T Consensus       107 T~~lL~~~~Ipy~il~~~~~~~~-----------------~~i~~ai~~~~~~~~P~allv~k~tf~~~~~~~~~~~~~~  169 (361)
T TIGR03297       107 TLSLLDALEIPWEVLSTDNDEAL-----------------AQIERALAHALATSRPYALVVRKGTFASYKLKGEPANPLP  169 (361)
T ss_pred             HHHHHHHCCCCEEECCCCHHHHH-----------------HHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCCCCCCC
T ss_conf             29999976998799086567899-----------------9999999999997997899983774331103555556577


Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHC---CCCCCCCCCEECCC--
Q ss_conf             6100134699999851980378886653037861004687411001222057899999620---68867332100001--
Q gi|254780813|r   89 KPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKI---GKKALLSVGSYQID--  163 (199)
Q Consensus        89 KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~---~~~~~~~aG~y~ie--  163 (199)
                      ..-++++|.+.+...-+..-.++     ...|.                +-.|+-.+-++.   ..+-|...|+.+--  
T Consensus       170 ~~~~Re~aI~~il~~~~~~~~iV-----sTTG~----------------~SREL~~~r~~~~~~~~~~F~~vG~MG~as~  228 (361)
T TIGR03297       170 TLMTREEAIAAILDHLPDNTVIV-----STTGK----------------TSRELYELRDRIGQGHARDFLTVGSMGHASQ  228 (361)
T ss_pred             CCCCHHHHHHHHHHHCCCCCEEE-----ECCCC----------------CHHHHHHHHHHHCCCCCCCEEECCCCCHHHH
T ss_conf             88899999999998379997799-----77886----------------3799999998627887653573488514769


Q ss_pred             -CCHHHH------HHEECCCCCCCCCCCHHHHHHHH
Q ss_conf             -223321------00011897532227699999999
Q gi|254780813|r  164 -KEGIQL------FSSIKGSYFSIVGLPIIELINDL  192 (199)
Q Consensus       164 -~~g~~~------i~~I~Gd~~~V~GLPi~~l~~~L  192 (199)
                       +.|..+      |=.|+||=+-.|.|--..+....
T Consensus       229 ialG~al~~~~~~Vi~lDGDGs~LMh~Gslati~~~  264 (361)
T TIGR03297       229 IALGLALARPDQRVVCLDGDGAALMHMGGLATIGTQ  264 (361)
T ss_pred             HHHHHHHHCCCCEEEEEECCHHHHHCCCHHHHHHHC
T ss_conf             999998628897089990868998544068788743


No 53 
>PHA01516 hypothetical protein
Probab=42.92  E-value=8  Score=19.94  Aligned_cols=17  Identities=29%  Similarity=0.381  Sum_probs=12.7

Q ss_pred             HHEECCCCCCCCCCCHH
Q ss_conf             00011897532227699
Q gi|254780813|r  170 FSSIKGSYFSIVGLPII  186 (199)
Q Consensus       170 i~~I~Gd~~~V~GLPi~  186 (199)
                      =..|.|||+|++||-+.
T Consensus        42 ~NnI~gDY~Na~GlqMw   58 (98)
T PHA01516         42 DNNIKPDYCNANGLQMW   58 (98)
T ss_pred             HCCCCCCCCCCHHHHHH
T ss_conf             46777442353204566


No 54 
>PRK04262 hypothetical protein; Provisional
Probab=41.74  E-value=31  Score=16.34  Aligned_cols=16  Identities=25%  Similarity=0.310  Sum_probs=11.6

Q ss_pred             HHCCCCCCCEECHHHH
Q ss_conf             1013775403413443
Q gi|254780813|r   64 VSNRYPESFVIGCDQT   79 (199)
Q Consensus        64 v~~~~~~~~VI~aDtv   79 (199)
                      -+...+..+|||+||-
T Consensus       128 ~sg~~~~~LVV~aD~~  143 (346)
T PRK04262        128 KSGMIKYALAIGADTA  143 (346)
T ss_pred             HCCCCCEEEEEECCCC
T ss_conf             7399976999831333


No 55 
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031   Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=34.64  E-value=39  Score=15.65  Aligned_cols=44  Identities=25%  Similarity=0.332  Sum_probs=30.0

Q ss_pred             EEECCCCHHH-----HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             4742699899-----99999789885997589884324220134457998999888765433
Q gi|254780813|r    5 IILASSSLSR-----RKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKA   61 (199)
Q Consensus         5 iILAS~S~~R-----~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka   61 (199)
                      ||+||.|=+.     .++|+++|++|++.-.             +...+|+.+.......+.
T Consensus         3 iIMGS~SD~~~m~~a~~~L~~fgi~~e~~V~-------------SAHRTP~~~~~ya~~a~~   51 (159)
T TIGR01162         3 IIMGSDSDLETMKKAAEILEEFGIPYELRVV-------------SAHRTPELMFEYAKEAEE   51 (159)
T ss_pred             EECCCCCCHHHHHHHHHHHHHCCCCEEEEEE-------------CCCCCHHHHHHHHHHHHH
T ss_conf             8536725478999999999855996678986-------------067780889999999986


No 56 
>cd02064 Flavokinase_C Riboflavin kinase (Flavokinase). This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin. 5'-phospho transferase and ATP:FMN-adenylyltransferase activities . The C-terminal domain has FMN-adenylyltransferase activitie. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD . A domain has been identified in the N-terminal region that is well conserved in all the bacterial FAD synthetases.This domain has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases .
Probab=33.92  E-value=41  Score=15.58  Aligned_cols=76  Identities=18%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             ECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCC
Q ss_conf             42699899999997898859975898843242201344579989998887654333210137754034134431012344
Q gi|254780813|r    7 LASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSI   86 (199)
Q Consensus         7 LAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i   86 (199)
                      +-++...|.++|+++|+++.+. -+|+++-.        ..+|.+....+-       ....+..+|+|.|=       -
T Consensus        53 ~l~~~~~k~~~l~~~gid~~~~-i~F~~~~~--------~ls~~~Fi~~~l-------~~l~~~~iVvG~Df-------~  109 (179)
T cd02064          53 LLTTLEEKLELLAALGVDYLLV-LPFDKEFA--------SLSAEEFVKDLL-------VKLNAKHVVVGFDF-------R  109 (179)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEE-ECCCHHHH--------CCCHHHHHHHHH-------HCCCCEEEEECCCC-------C
T ss_conf             2589999999998669999998-44788886--------399999999874-------14796399977730-------2


Q ss_pred             CCCCCHHHHHHHHHHHHCCCC
Q ss_conf             676100134699999851980
Q gi|254780813|r   87 YHKPVDMLEAEKNLLRISGKK  107 (199)
Q Consensus        87 ~~KP~~~~eA~~~L~~lsg~~  107 (199)
                      |||  +++--.++|+.++.+.
T Consensus       110 FG~--~r~G~~~~L~~~~~~~  128 (179)
T cd02064         110 FGK--GRSGNAELLRELGEKY  128 (179)
T ss_pred             CCC--CCCCCHHHHHHHHHHH
T ss_conf             578--9887999999999872


No 57 
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=33.77  E-value=41  Score=15.56  Aligned_cols=85  Identities=18%  Similarity=0.210  Sum_probs=36.8

Q ss_pred             CCHHHHHHHHHHHHCCCCEEE--EEEEEECCCCCCCEEEEEEEEEEC------------CCCCHHHHHHHHHHCCCCCCC
Q ss_conf             100134699999851980378--886653037861004687411001------------222057899999620688673
Q gi|254780813|r   90 PVDMLEAEKNLLRISGKKHRI--SSAYVLVQNGKVLRHHISVAQLTM------------YKLSEEFIKFYLNKIGKKALL  155 (199)
Q Consensus        90 P~~~~eA~~~L~~lsg~~h~v--~T~~~i~~~~~~~~~~~~~t~v~f------------~~l~~~~I~~Yi~~~~~~~~~  155 (199)
                      |..-.++.+.|+.++-..-.|  +++-.++++   .|...+ .-+.|            ..+-..-|.+|+....-----
T Consensus        13 p~~lkhtv~sLr~~~~p~y~v~~V~~~~Li~E---pW~~~T-~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGi   88 (253)
T COG4285          13 PYSLKHTVRSLRLFAPPYYAVDRVDAQFLIKE---PWEETT-LLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGI   88 (253)
T ss_pred             HHHHHHHHHHHHHHCCCHHEEEEEEEHEEECC---CCHHCE-EEEEECCCCCCHHHHHHCCHHHHHHHHHHHCCCEEEEE
T ss_conf             18999999999864431114777530100058---551020-79993288774387775212255587887558708998


Q ss_pred             CCCEECCCCCHHHHHHEECCCCCCCCC
Q ss_conf             321000012233210001189753222
Q gi|254780813|r  156 SVGSYQIDKEGIQLFSSIKGSYFSIVG  182 (199)
Q Consensus       156 ~aG~y~ie~~g~~~i~~I~Gd~~~V~G  182 (199)
                      |||||    .|...|+--+|.-.+|+|
T Consensus        89 CAG~Y----Fg~~~veF~~p~~~~vvg  111 (253)
T COG4285          89 CAGGY----FGSAYVEFAEPTGIEVVG  111 (253)
T ss_pred             ECCCC----CCCEEEEEECCCCCEEEE
T ss_conf             32554----353479983589963465


No 58 
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=33.52  E-value=41  Score=15.54  Aligned_cols=43  Identities=28%  Similarity=0.365  Sum_probs=28.5

Q ss_pred             CEEECCCCHHH-----HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             54742699899-----999997898859975898843242201344579989998887654
Q gi|254780813|r    4 NIILASSSLSR-----RKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEK   59 (199)
Q Consensus         4 ~iILAS~S~~R-----~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~   59 (199)
                      -||++|.|-+.     .++|+.+|++|++.-.             +...+|..+.......
T Consensus         6 ~IIMGS~SD~~~mk~Aa~~L~~fgv~ye~~Vv-------------SAHRTPe~m~~ya~~a   53 (162)
T COG0041           6 GIIMGSKSDWDTMKKAAEILEEFGVPYEVRVV-------------SAHRTPEKMFEYAEEA   53 (162)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHCCCCEEEEEE-------------ECCCCHHHHHHHHHHH
T ss_conf             99955702399999999999984997599998-------------4467989999999999


No 59 
>pfam03438 Pneumo_NS1 Pneumovirus NS1 protein. This non-structural protein is one of two found in pneumoviruses. The protein is about 140 amino acids in length. The NS1 protein appears to be important for efficient replication but not essential. The NS1 protein has been shown by yeast two-hybrid to interact with the viral P protein. This protein is also known as the 1C protein. It has also been shown that NS1 can potently inhibit transcription and RNA replication.
Probab=30.74  E-value=32  Score=16.21  Aligned_cols=39  Identities=21%  Similarity=0.382  Sum_probs=26.3

Q ss_pred             EEEEEECCCCCCCEEEE-------------EEEEEEC-CCCCHHHHHHHHHHC
Q ss_conf             88665303786100468-------------7411001-222057899999620
Q gi|254780813|r  111 SSAYVLVQNGKVLRHHI-------------SVAQLTM-YKLSEEFIKFYLNKI  149 (199)
Q Consensus       111 ~T~~~i~~~~~~~~~~~-------------~~t~v~f-~~l~~~~I~~Yi~~~  149 (199)
                      +|.+-++.+++-+|.-.             +-++++| ++++|.++..|.+..
T Consensus        77 fttmpilqnggyiwel~elthc~q~ngl~ddncei~fskrlsds~l~~y~nql  129 (136)
T pfam03438        77 FTSMPILQNGGYIWELMELTHCFQPNGLIDDNCEIKFSKKLSDSELAKYMNQL  129 (136)
T ss_pred             CCCCCEECCCCEEEEHHHHHHHCCCCCCCCCCCEEEEEHHCCHHHHHHHHHHH
T ss_conf             62420550696531224355423558633578258873433877899999999


No 60 
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.66  E-value=34  Score=16.09  Aligned_cols=41  Identities=22%  Similarity=0.193  Sum_probs=33.1

Q ss_pred             CHHHHHCCCCCCCCCC-CHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf             1344310123446761-0013469999985198037888665303
Q gi|254780813|r   75 GCDQTMSLGSSIYHKP-VDMLEAEKNLLRISGKKHRISSAYVLVQ  118 (199)
Q Consensus        75 ~aDtvv~~~g~i~~KP-~~~~eA~~~L~~lsg~~h~v~T~~~i~~  118 (199)
                      .+|+||.++|-.+-|- .+.++|++.+..+|++...   |+|...
T Consensus        85 ~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkli---GvCfm~  126 (154)
T COG4090          85 SADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLI---GVCFMN  126 (154)
T ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEE---EEEHHH
T ss_conf             445899975644676789979999999843898658---751898


No 61 
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=28.65  E-value=40  Score=15.61  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=30.7

Q ss_pred             EECHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             3413443101234467610013469999985198037888
Q gi|254780813|r   73 VIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISS  112 (199)
Q Consensus        73 VI~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T  112 (199)
                      +++-|-+++.=|..-.+-.++..|...|+.|.|+.|.|-.
T Consensus        42 tv~p~D~lwhLGDl~~~~n~~~~a~~IlerLnGrkhlv~G   81 (186)
T COG4186          42 TVGPDDVLWHLGDLSSGANRERAAGLILERLNGRKHLVPG   81 (186)
T ss_pred             CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf             2784436888111011455265899999976993899607


No 62 
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=26.75  E-value=54  Score=14.82  Aligned_cols=81  Identities=19%  Similarity=0.302  Sum_probs=47.3

Q ss_pred             HHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--H-----CCCCCCCEECHHHHHCCCC
Q ss_conf             89999999789885997589884324220134457998999888765433321--0-----1377540341344310123
Q gi|254780813|r   12 LSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEV--S-----NRYPESFVIGCDQTMSLGS   84 (199)
Q Consensus        12 ~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v--~-----~~~~~~~VI~aDtvv~~~g   84 (199)
                      ..|.+-|+.+|.+|..+...+|+...        +.+|.++...++..---.+  +     +.-++.+-.|||-+++ +|
T Consensus       121 ~~ra~el~~lGvd~I~vH~G~D~Q~~--------g~~p~~~l~~v~~~~~~~vAVAGGi~~~t~~~~v~~GAdIvIV-Gg  191 (429)
T PRK07028        121 VKRAVELEELGVDIINVHVGIDQQML--------GKDPLELLKKVSEEVSIPIAAAGGLDAETAVKAVEAGADIVIV-GG  191 (429)
T ss_pred             HHHHHHHHHCCCCEEEEEEEECHHHC--------CCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEE-CC
T ss_conf             99999999709988999762335531--------7984999999997559718996687877699999759989998-94


Q ss_pred             CCCCCCCHHHHHHHHHHH
Q ss_conf             446761001346999998
Q gi|254780813|r   85 SIYHKPVDMLEAEKNLLR  102 (199)
Q Consensus        85 ~i~~KP~~~~eA~~~L~~  102 (199)
                       -+-|..|+.+|.+.++.
T Consensus       192 -aI~~a~dp~~aAr~ir~  208 (429)
T PRK07028        192 -NIYKSADVTGAARDIRE  208 (429)
T ss_pred             -CCCCCCCHHHHHHHHHH
T ss_conf             -00579997999999999


No 63 
>pfam00469 F-protein Negative factor, (F-Protein) or Nef. Nef protein accelerates virulent progression of AIDS by its interaction with cellular proteins involved in signal transduction and host cell activation. Nef has been shown to bind specifically to a subset of the Src kinase family.
Probab=26.54  E-value=54  Score=14.80  Aligned_cols=15  Identities=13%  Similarity=0.038  Sum_probs=8.7

Q ss_pred             CCCCCCHHHHHHHHH
Q ss_conf             467610013469999
Q gi|254780813|r   86 IYHKPVDMLEAEKNL  100 (199)
Q Consensus        86 i~~KP~~~~eA~~~L  100 (199)
                      +==.|.+.+-|..+=
T Consensus        91 VPLRpMTYK~A~DlS  105 (220)
T pfam00469        91 VPLRPMTYKLAVDMS  105 (220)
T ss_pred             CCCCCCCHHHHHHHH
T ss_conf             888875488875457


No 64 
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=26.35  E-value=35  Score=15.96  Aligned_cols=10  Identities=20%  Similarity=0.086  Sum_probs=3.9

Q ss_pred             HHHHHHHHHH
Q ss_conf             8999888765
Q gi|254780813|r   49 PEKIALILAE   58 (199)
Q Consensus        49 p~~~~~~lA~   58 (199)
                      -.+++..++.
T Consensus       137 ~~qlVr~~~~  146 (524)
T PRK02910        137 FYQLVRALAK  146 (524)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999852


No 65 
>KOG0335 consensus
Probab=26.12  E-value=55  Score=14.75  Aligned_cols=106  Identities=18%  Similarity=0.277  Sum_probs=60.0

Q ss_pred             ECHHHHHCC------CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             413443101------23446761001346999998519803788866530378610046874110012220578999996
Q gi|254780813|r   74 IGCDQTMSL------GSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLN  147 (199)
Q Consensus        74 I~aDtvv~~------~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~  147 (199)
                      =.||++..+      .-+-++=+.+..|--+-|..|+..+..++-+..|...|--+.   .++.|.-.+++.+ |+.||-
T Consensus       348 ~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~---~V~hVInyDmP~d-~d~YvH  423 (482)
T KOG0335         348 RGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIP---NVKHVINYDMPAD-IDDYVH  423 (482)
T ss_pred             HHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC---CCCEEEEEECCCC-HHHHHH
T ss_conf             032699999861798745603325563799998776469866798703665478876---8743588636752-466777


Q ss_pred             HCCCCCCCCCCEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             206886733210000122332100011897532227699999999978
Q gi|254780813|r  148 KIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIE  195 (199)
Q Consensus       148 ~~~~~~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~  195 (199)
                      +..--+....+|...     .||+   +.-.   .++ ..|.+.|.+.
T Consensus       424 RIGRTGR~Gn~G~at-----sf~n---~~~~---~i~-~~L~~~l~ea  459 (482)
T KOG0335         424 RIGRTGRVGNGGRAT-----SFFN---EKNQ---NIA-KALVEILTEA  459 (482)
T ss_pred             HCCCCCCCCCCCEEE-----EEEC---CCCC---HHH-HHHHHHHHHH
T ss_conf             415435577773268-----8764---7430---068-9999999984


No 66 
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=26.02  E-value=55  Score=14.74  Aligned_cols=28  Identities=14%  Similarity=0.128  Sum_probs=21.8

Q ss_pred             CCCCHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf             2699899999997898859975898843
Q gi|254780813|r    8 ASSSLSRRKLLQNSGIQFSVVKPNIDER   35 (199)
Q Consensus         8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~   35 (199)
                      ++++..-.+||+.+|+++..+-.+.|..
T Consensus       122 G~~~~~~~~ll~~lg~~v~~ln~~~dg~  149 (355)
T cd03084         122 GVGGPIAPQLLEKLGAEVIPLNCEPDGN  149 (355)
T ss_pred             CCCCCHHHHHHHHCCCEEEEEEECCCCC
T ss_conf             8551015999997298499952115888


No 67 
>PRK00784 cobyric acid synthase; Provisional
Probab=25.83  E-value=39  Score=15.71  Aligned_cols=47  Identities=21%  Similarity=0.218  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHEECCCCCCCCCCCHH
Q ss_conf             578999996206886733210000122332100011897532227699
Q gi|254780813|r  139 EEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVGLPII  186 (199)
Q Consensus       139 ~~~I~~Yi~~~~~~~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~  186 (199)
                      ++.|..|.++. .-.++-||||++=|....==..+||+...+-||-+.
T Consensus       317 ~~~i~~~~~~G-~~V~GICGGyQMLG~~I~DP~gvE~~~~~~~GLGLL  363 (492)
T PRK00784        317 DEAIRAHARRG-GPVLGICGGYQMLGRTIADPDGVEGAPGEVEGLGLL  363 (492)
T ss_pred             HHHHHHHHHCC-CCEEEECCHHHHHCCEECCCCCCCCCCCCCCCCCCE
T ss_conf             99999999759-978998702886302003865666787754652313


No 68 
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1;  divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.
Probab=24.58  E-value=29  Score=16.46  Aligned_cols=16  Identities=31%  Similarity=0.202  Sum_probs=10.2

Q ss_pred             HHHHHHHHCCCCCEEE
Q ss_conf             9999999789885997
Q gi|254780813|r   13 SRRKLLQNSGIQFSVV   28 (199)
Q Consensus        13 ~R~~lL~~~gi~f~~~   28 (199)
                      .|-..|...|+.+.++
T Consensus        61 ~ri~~Ll~~~I~PifV   76 (316)
T cd00128          61 YRTCRLLELGIKPVFV   76 (316)
T ss_pred             HHHHHHHHCCCEEEEE
T ss_conf             9999999779959999


No 69 
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=24.48  E-value=28  Score=16.56  Aligned_cols=60  Identities=13%  Similarity=0.080  Sum_probs=39.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             12344676100134699999851980378886653037861004687411001222057899999620
Q gi|254780813|r   82 LGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKI  149 (199)
Q Consensus        82 ~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~  149 (199)
                      +..-++-=|..+++|.+.|..+--+-      +|+..+..  +..++..--.|+.+||+|+.+|+.+.
T Consensus       152 ~~~IviAVPV~p~~a~~~l~s~~D~v------vc~~~P~~--F~AVg~~Y~dF~q~sdeEV~~lL~~a  211 (220)
T COG1926         152 PKEIVIAVPVAPEDAAAELESEADEV------VCLYMPAP--FEAVGEFYRDFRQVSDEEVRALLRRA  211 (220)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHCCEE------EEECCCCC--HHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_conf             86089984459789999998546759------99827854--89999999777653899999999851


No 70 
>TIGR02724 phenyl_P_beta phenylphosphate carboxylase, beta subunit; InterPro: IPR014096   Members of this protein family are the beta subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This beta subunit is homologous to the alpha subunit and, more broadly, to UbiD family decarboxylases..
Probab=24.29  E-value=32  Score=16.21  Aligned_cols=30  Identities=23%  Similarity=0.589  Sum_probs=17.1

Q ss_pred             HHCCCCCCCEECHHHHHCCCCCCCCCCCHH
Q ss_conf             101377540341344310123446761001
Q gi|254780813|r   64 VSNRYPESFVIGCDQTMSLGSSIYHKPVDM   93 (199)
Q Consensus        64 v~~~~~~~~VI~aDtvv~~~g~i~~KP~~~   93 (199)
                      .-++.|.+-|||||-++...|..++|-.+.
T Consensus       187 ~GkkmPaaaiiGCdPlifm~GtlmhkGasd  216 (472)
T TIGR02724       187 LGKKMPAAAIIGCDPLIFMAGTLMHKGASD  216 (472)
T ss_pred             HCCCCCCCEEECCCHHHHHHHHHHHCCCCC
T ss_conf             313365200122651444300233056654


No 71 
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=24.13  E-value=55  Score=14.76  Aligned_cols=86  Identities=14%  Similarity=0.085  Sum_probs=57.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCC-CEEEEEEEEECCCC------CCCEE--EEEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             1234467610013469999985198-03788866530378------61004--687411001222057899999620688
Q gi|254780813|r   82 LGSSIYHKPVDMLEAEKNLLRISGK-KHRISSAYVLVQNG------KVLRH--HISVAQLTMYKLSEEFIKFYLNKIGKK  152 (199)
Q Consensus        82 ~~g~i~~KP~~~~eA~~~L~~lsg~-~h~v~T~~~i~~~~------~~~~~--~~~~t~v~f~~l~~~~I~~Yi~~~~~~  152 (199)
                      .+--|+--|.|+++++.+- .-.|. -+.|+-|-|+.+-+      +.+..  .-..++++..+-+.-+++...+...|.
T Consensus       668 IkEPila~PNdpDd~r~ls-e~~~~~idevFiGSCMtniGh~ra~~klL~~~~~~~~~rLwvapPTkmd~~qL~~EG~y~  746 (852)
T COG1049         668 IKEPILAAPNDPDDVRLLS-EVAGDKIDEVFIGSCMTNIGHFRAAGKLLENAKGELPTRLWVAPPTKMDAAQLTEEGYYS  746 (852)
T ss_pred             CCCCEECCCCCCHHHHHHH-HHCCCCCCEEEEEHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHCCHHH
T ss_conf             1787542899902766667-751773311344101125214999999996076677764596488623499986530688


Q ss_pred             CCCCCCEECCCCCHHHH
Q ss_conf             67332100001223321
Q gi|254780813|r  153 ALLSVGSYQIDKEGIQL  169 (199)
Q Consensus       153 ~~~~aG~y~ie~~g~~~  169 (199)
                      .+.+||++ +|-.|..+
T Consensus       747 ifg~agar-~E~PGCsL  762 (852)
T COG1049         747 IFGKAGAR-IEMPGCSL  762 (852)
T ss_pred             HHHHCCCE-ECCCCCCC
T ss_conf             87631333-11787520


No 72 
>pfam10288 DUF2392 Protein of unknown function (DUF2392). This is a family of proteins conserved from plants to humans. The function is not known. It carries a characteristic GRG sequence motif.
Probab=23.97  E-value=37  Score=15.80  Aligned_cols=49  Identities=22%  Similarity=0.223  Sum_probs=33.1

Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCC----------CCEECCCCCHHHHHHEECCCCCCCCC
Q ss_conf             12220578999996206886733----------21000012233210001189753222
Q gi|254780813|r  134 MYKLSEEFIKFYLNKIGKKALLS----------VGSYQIDKEGIQLFSSIKGSYFSIVG  182 (199)
Q Consensus       134 f~~l~~~~I~~Yi~~~~~~~~~~----------aG~y~ie~~g~~~i~~I~Gd~~~V~G  182 (199)
                      +|++...||..|..-..-.++..          .---.|++....||..++.+|.+++-
T Consensus        37 LRD~l~~Ei~~Y~~~~~l~~~~~~~~~~~~~~~~k~~SI~~L~~~f~~~Lq~~ypstvs   95 (104)
T pfam10288        37 LRDLLLKEIEAYCSLKNLPPLLINSLITIASKLSKNMSINELTEQYFDNLQENYPSTVS   95 (104)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf             58856999999999808740013555205430577788999999999988544842667


No 73 
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family; InterPro: IPR011816    Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (IPR011813 from INTERPRO). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.; GO: 0008233 peptidase activity, 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic.
Probab=23.71  E-value=32  Score=16.24  Aligned_cols=32  Identities=28%  Similarity=0.631  Sum_probs=17.7

Q ss_pred             CC-HHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHE
Q ss_conf             20-5789999962068867332100001223321000
Q gi|254780813|r  137 LS-EEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSS  172 (199)
Q Consensus       137 l~-~~~I~~Yi~~~~~~~~~~aG~y~ie~~g~~~i~~  172 (199)
                      +| ++-++.|++    +.+.-.|.|+||.-.-.+|.+
T Consensus        96 ~sK~~ILE~YLN----~iYfG~G~YG~~~AA~~YFgK  128 (700)
T TIGR02074        96 LSKDEILELYLN----QIYFGNGAYGVEAAAQVYFGK  128 (700)
T ss_pred             CCHHHHHHHHHH----HHHHCCCCHHHHHHHHHHCCC
T ss_conf             595799976302----421168841588999760697


No 74 
>TIGR01761 thiaz-red thiazolinyl imide reductase; InterPro: IPR010091   This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclised to a thiazoline ring containing an imide double bond. Examples include yersiniabactin and pyochelin. Yersiniabactin is a virulence factor secreted by Yersinia pestis in iron-deficient microenvironments, in order to scavenge ferric ions . .
Probab=23.59  E-value=62  Score=14.46  Aligned_cols=135  Identities=17%  Similarity=0.243  Sum_probs=63.9

Q ss_pred             EECCCCHHHHHHHHHCCCCC----EEECCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHH
Q ss_conf             74269989999999789885----99758988432--4220134457998999888765433321013775403413443
Q gi|254780813|r    6 ILASSSLSRRKLLQNSGIQF----SVVKPNIDERE--MEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQT   79 (199)
Q Consensus         6 ILAS~S~~R~~lL~~~gi~f----~~~~~~iDE~~--~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtv   79 (199)
                      |||-+|.|=|+|-+.+|++.    +.+|-++|=-=  +....   .+.+-.+++..        ..++.=          
T Consensus        43 lLAqGS~RSR~LA~~lGvpLy~~ve~lp~~~~~ACvvvRSa~---~Gg~G~~LA~a--------LL~RGi----------  101 (378)
T TIGR01761        43 LLAQGSERSRALAHRLGVPLYSEVEELPDDIDIACVVVRSAI---VGGKGSELARA--------LLKRGI----------  101 (378)
T ss_pred             EEHHCCHHHHHHHHHHCCCCCCCHHHCCCCCCEEEEEEEEEE---ECCCCHHHHHH--------HHHCCC----------
T ss_conf             100103689999998098410671004688755588852253---17972589999--------985675----------


Q ss_pred             HCCCCCCCCCCCHHHHHHHHH--HHHCCCCEEEEEEE----EE---CC--------CCCCCEEEEE---EEEEECCCCCH
Q ss_conf             101234467610013469999--98519803788866----53---03--------7861004687---41100122205
Q gi|254780813|r   80 MSLGSSIYHKPVDMLEAEKNL--LRISGKKHRISSAY----VL---VQ--------NGKVLRHHIS---VAQLTMYKLSE  139 (199)
Q Consensus        80 v~~~g~i~~KP~~~~eA~~~L--~~lsg~~h~v~T~~----~i---~~--------~~~~~~~~~~---~t~v~f~~l~~  139 (199)
                          ..+.|-|--.+|-.+.+  -.-.|+...|.|=.    ++   +.        ..+.+ .+++   .-+|-|..|  
T Consensus       102 ----~VLqEHPl~p~d~~~L~~lA~~~Gr~Y~vNTFYPh~PAv~~Fi~~~~q~rr~~~~~p-~~v~at~g~Ql~ys~L--  174 (378)
T TIGR01761       102 ----HVLQEHPLHPEDIAELLRLAERQGRRYLVNTFYPHLPAVRRFIEYARQLRRAARKKP-AFVEATTGVQLLYSTL--  174 (378)
T ss_pred             ----EEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC-CEEEEHHHHHHHHHHH--
T ss_conf             ----156328988778999999999709866420677873378999999999999974789-7898400268999999--


Q ss_pred             HHHHHHHHHCCCCCCCCCCEECCCCCH-HHHH
Q ss_conf             789999962068867332100001223-3210
Q gi|254780813|r  140 EFIKFYLNKIGKKALLSVGSYQIDKEG-IQLF  170 (199)
Q Consensus       140 ~~I~~Yi~~~~~~~~~~aG~y~ie~~g-~~~i  170 (199)
                      |-|-.-+.  ..-.+.|+|.|.+|..+ ..+-
T Consensus       175 D~~~~~Lg--G~GtfaC~~p~~l~~~~~~~~~  204 (378)
T TIGR01761       175 DILARALG--GEGTFACVGPLSLESASVGDLS  204 (378)
T ss_pred             HHHHHHHC--CCCCEEECCCCCCCCCCCCCHH
T ss_conf             99999847--8841442155111336677502


No 75 
>pfam01755 Glyco_transf_25 Glycosyltransferase family 25 (LPS biosynthesis protein). Members of this family belong to Glycosyltransferase family 25 This is a family of glycosyltransferases involved in lipopolysaccharide (LPS) biosynthesis. These enzymes catalyse the transfer of various sugars onto the growing LPS chain during its biosynthesis.
Probab=23.44  E-value=62  Score=14.44  Aligned_cols=69  Identities=10%  Similarity=0.089  Sum_probs=38.4

Q ss_pred             ECCCCHHHHHHHH---HCCCCCEEECC----CCCCCCCCCCC-------CCCCCCCHHHHHHHHHHHHH-HHHHCCC-CC
Q ss_conf             4269989999999---78988599758----98843242201-------34457998999888765433-3210137-75
Q gi|254780813|r    7 LASSSLSRRKLLQ---NSGIQFSVVKP----NIDEREMEKKM-------DFSERKRPEKIALILAEKKA-LEVSNRY-PE   70 (199)
Q Consensus         7 LAS~S~~R~~lL~---~~gi~f~~~~~----~iDE~~~~~~~-------~~~~~~~p~~~~~~lA~~Ka-~~v~~~~-~~   70 (199)
                      |....-||..+.+   ++|++|+.+.+    ..|........       ......++.++++.++..++ +.+.+.. +-
T Consensus         9 L~r~~~Rr~~~~~~l~~~~i~~~~~~Avdg~~l~~~~~~~~~~~~~~~~~~~r~lt~gEiGC~lSH~~~w~~~v~~~~~~   88 (200)
T pfam01755         9 LKRATERREHIQKEFGKLNIPFQFFDAIDGKELPNHLLFKLYNFLLRSKYAGRPLTLGEIGCFLSHYSLWQKCVELNLEY   88 (200)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             99958999999999987699769998463101022678873255553346789888445148999999999999759984


Q ss_pred             CCEEC
Q ss_conf             40341
Q gi|254780813|r   71 SFVIG   75 (199)
Q Consensus        71 ~~VI~   75 (199)
                      .+|+=
T Consensus        89 alIlE   93 (200)
T pfam01755        89 IIILE   93 (200)
T ss_pred             EEEEC
T ss_conf             99981


No 76 
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=22.65  E-value=35  Score=15.99  Aligned_cols=16  Identities=31%  Similarity=0.252  Sum_probs=7.4

Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             9899988876543332
Q gi|254780813|r   48 RPEKIALILAEKKALE   63 (199)
Q Consensus        48 ~p~~~~~~lA~~Ka~~   63 (199)
                      .|..+....+...+.-
T Consensus        68 ~P~~~i~~~~~~gad~   83 (227)
T PRK09722         68 RPQDYIAQLADAGADF   83 (227)
T ss_pred             CHHHHHHHHHHCCCCE
T ss_conf             8888899998549989


No 77 
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=22.64  E-value=64  Score=14.34  Aligned_cols=27  Identities=30%  Similarity=0.255  Sum_probs=19.5

Q ss_pred             CCCHHHHHH-HHHCCCCCEEECCCCCCC
Q ss_conf             699899999-997898859975898843
Q gi|254780813|r    9 SSSLSRRKL-LQNSGIQFSVVKPNIDER   35 (199)
Q Consensus         9 S~S~~R~~l-L~~~gi~f~~~~~~iDE~   35 (199)
                      |+-.-|.-| |+.+|++|+.+.-+++..
T Consensus        10 SswSlR~~l~L~e~glpfe~~~v~l~~~   37 (73)
T cd03043          10 SSWSLRPWLLLKAAGIPFEEILVPLYTP   37 (73)
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             6189999999998699857999789991


No 78 
>TIGR00011 YbaK_EbsC ybaK/ebsC protein; InterPro: IPR004369   The family includes P36922 from SWISSPROT, a protein which affects the expression of a receptor called binding substance, that mediates mating aggregate formation in Enterococcus faecalis . It was suggested that this may be a regulatory protein that suppresses the function or expression of ebsA and/or ebsMB. A crystallographic study of another member of this family, P45202 from SWISSPROT from Haemophilus influenzae, (HI1434, YbaK) suggests that these proteins could be involved in nucleotide or oligonucleotide binding .; GO: 0006355 regulation of transcription DNA-dependent.
Probab=22.10  E-value=66  Score=14.27  Aligned_cols=78  Identities=23%  Similarity=0.239  Sum_probs=41.5

Q ss_pred             HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCCCCCCHHHH
Q ss_conf             99997898859975898843242201344579989998887654333210137754034134431012344676100134
Q gi|254780813|r   16 KLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLE   95 (199)
Q Consensus        16 ~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv~~~g~i~~KP~~~~e   95 (199)
                      .+|++.||+|++..-+.||+...         .-.+.|..+    ..+...-|+ .||+..|.-- -+--+.==|.|++=
T Consensus         5 r~L~~~kI~y~~~~Y~~d~~~~~---------~g~~~A~~l----G~~~~~VfK-TLv~~~~~~~-~p~~VaviP~~~~L   69 (156)
T TIGR00011         5 RLLDKAKIEYEVHEYEVDPDHDL---------DGESAAEKL----GVDPERVFK-TLVAEGDKKG-KPLVVAVIPVDEEL   69 (156)
T ss_pred             HHHHHCCCCEEEECCCCCCCCCH---------HHHHHHHHH----CCCCCEEEE-EEEEEECCCC-CCEEEEEEECCCCC
T ss_conf             88996199568721356998861---------589999982----998110688-8899607899-97179997158621


Q ss_pred             HHHHHHHHCCCCE
Q ss_conf             6999998519803
Q gi|254780813|r   96 AEKNLLRISGKKH  108 (199)
Q Consensus        96 A~~~L~~lsg~~h  108 (199)
                      =.+.|-+.+|.++
T Consensus        70 ~lK~lAka~G~KK   82 (156)
T TIGR00011        70 DLKKLAKASGGKK   82 (156)
T ss_pred             CHHHHHHHHCCCC
T ss_conf             8789998808984


No 79 
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252   This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=22.03  E-value=58  Score=14.61  Aligned_cols=75  Identities=19%  Similarity=0.204  Sum_probs=38.9

Q ss_pred             CCCCCHHHHHHHHHHHHCCCC---EEEEEEEEECCCCC---CCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCC----
Q ss_conf             676100134699999851980---37888665303786---10046874110012220578999996206886733----
Q gi|254780813|r   87 YHKPVDMLEAEKNLLRISGKK---HRISSAYVLVQNGK---VLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLS----  156 (199)
Q Consensus        87 ~~KP~~~~eA~~~L~~lsg~~---h~v~T~~~i~~~~~---~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~----  156 (199)
                      |.=|.|+ .-=+.+|.|..+.   =+|.=|.+-..++.   -+++.  +|+|+|.+|+.++|..-|..-.+ -++.    
T Consensus       301 YYDpdD~-NvPkYIK~lFe~GAPADFvLIGATTr~P~eINpALRSR--CaEvfFePL~p~dI~~Iv~~AA~-klnv~L~~  376 (616)
T TIGR02903       301 YYDPDDE-NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSR--CAEVFFEPLTPEDIKEIVLNAAE-KLNVKLAE  376 (616)
T ss_pred             CCCCCCC-CCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCHHHHCC--CCEEECCCCCHHHHHHHHHHHHH-HCCCCCCC
T ss_conf             2487537-86558888522688825687266158824405123301--43132179887899999999888-61770003


Q ss_pred             -----CCEECCCCC
Q ss_conf             -----210000122
Q gi|254780813|r  157 -----VGSYQIDKE  165 (199)
Q Consensus       157 -----aG~y~ie~~  165 (199)
                           -..|.|||.
T Consensus       377 gV~e~Ia~YTieGR  390 (616)
T TIGR02903       377 GVEELIARYTIEGR  390 (616)
T ss_pred             CHHHHHHHCCCCCH
T ss_conf             64878721471311


No 80 
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain; InterPro: IPR011947    This entry represents the phosphatase domain of the human RNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi  and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs  and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3 . This domain is related to domains found in the human NLI interacting factor-like phosphatases. ; GO: 0004721 phosphoprotein phosphatase activity, 0005634 nucleus.
Probab=21.16  E-value=45  Score=15.29  Aligned_cols=49  Identities=14%  Similarity=0.156  Sum_probs=37.8

Q ss_pred             CCCCCCCCCCCHHHHHHHH--HHHHCC-CCEEEEEEEEECCCCCCCEEEEEEEEE
Q ss_conf             0123446761001346999--998519-803788866530378610046874110
Q gi|254780813|r   81 SLGSSIYHKPVDMLEAEKN--LLRISG-KKHRISSAYVLVQNGKVLRHHISVAQL  132 (199)
Q Consensus        81 ~~~g~i~~KP~~~~eA~~~--L~~lsg-~~h~v~T~~~i~~~~~~~~~~~~~t~v  132 (199)
                      .|+++|+.+=.+..-..+.  |..+-+ .-..   +|||+++..-+|.+...--|
T Consensus       111 yFg~RiiSRdE~~~~~~K~~nL~~Lfpw~d~~---~VVIiDDr~~VW~~~k~NLI  162 (170)
T TIGR02250       111 YFGDRIISRDESGSPHTKSKNLLRLFPWADES---MVVIIDDREDVWPKHKDNLI  162 (170)
T ss_pred             CCCCCEEECCCCCCCCCCHHHHHHHCCCCCCE---EEEEECCCHHHHCCCCCCCE
T ss_conf             14882054157898762602277533301771---28998186573101412463


No 81 
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=20.86  E-value=70  Score=14.11  Aligned_cols=61  Identities=18%  Similarity=0.201  Sum_probs=44.0

Q ss_pred             CEEEEEEEEECCCCCCCEEEEEEEEEEC--CCCC-HHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHEECCCCCCCCC
Q ss_conf             0378886653037861004687411001--2220-57899999620688673321000012233210001189753222
Q gi|254780813|r  107 KHRISSAYVLVQNGKVLRHHISVAQLTM--YKLS-EEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVG  182 (199)
Q Consensus       107 ~h~v~T~~~i~~~~~~~~~~~~~t~v~f--~~l~-~~~I~~Yi~~~~~~~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~G  182 (199)
                      -|++|+-|+++.-+..+++....-.+.+  ++.+ +++|.+--.        .|++       ..||...+-+|+|.+|
T Consensus       602 H~YLH~~V~~VgQEPvLf~gSvr~NIaYGL~~~~T~~~~~aaA~--------~a~a-------hdFI~~~~~gydT~vG  665 (770)
T TIGR00958       602 HHYLHRQVALVGQEPVLFSGSVRENIAYGLTKTPTDEEVTAAAK--------AANA-------HDFISELPNGYDTEVG  665 (770)
T ss_pred             CEECCCEEEEEECCCEECCCCHHHHHHHCCCCCCCHHHHHHHHH--------HHCC-------CCCCCCCCCCCCCCCC
T ss_conf             50100025433205430246316656516899982789999998--------6137-------6443578898675408


No 82 
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366   This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=20.27  E-value=70  Score=14.10  Aligned_cols=64  Identities=9%  Similarity=0.079  Sum_probs=29.3

Q ss_pred             CCCEECHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHH
Q ss_conf             54034134431012344676100134699999851980378886653037861004687411001222057899
Q gi|254780813|r   70 ESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIK  143 (199)
Q Consensus        70 ~~~VI~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~  143 (199)
                      +.+.-..||+|.+-|.        .+..++.+.|=-..-.--|-++++.++....+..-.+  +..++.+...+
T Consensus       159 ~~lA~~~~Tlv~yMG~--------~~l~~I~~~Li~~G~~~~tPvA~v~~At~~~Q~~~~~--tL~~~~~~~~~  222 (242)
T TIGR01469       159 EALAKGGGTLVIYMGV--------ANLAEIAKELIEAGRDPDTPVAVVEWATTPNQRVVIG--TLGDLAEKAAE  222 (242)
T ss_pred             HHCCCCCCCEEEEHHH--------HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEE--EHHHHHHHHHH
T ss_conf             6715767726886217--------8899999999963889678274443288512025565--38889999997


No 83 
>PRK03980 flap endonuclease-1; Provisional
Probab=20.10  E-value=50  Score=15.04  Aligned_cols=12  Identities=42%  Similarity=0.576  Sum_probs=4.9

Q ss_pred             HHHHHCCCCCEE
Q ss_conf             999978988599
Q gi|254780813|r   16 KLLQNSGIQFSV   27 (199)
Q Consensus        16 ~lL~~~gi~f~~   27 (199)
                      +||+.+|+++..
T Consensus        90 ~LL~~~Gipyi~  101 (295)
T PRK03980         90 KLLDLMGIPYVQ  101 (295)
T ss_pred             HHHHHCCCCCCC
T ss_conf             999986987121


Done!