Query         gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 199
No_of_seqs    107 out of 3404
Neff          6.6 
Searched_HMMs 33803
Date          Wed Jun  1 13:36:56 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780813.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1ex2_A Protein MAF; structura 100.0       0       0  403.8  15.4  188    1-198     1-188 (189)
  2 >2p5x_A ASMTL, N-acetylseroton 100.0       0       0  398.4  14.6  190    1-197     2-204 (230)
  3 >2amh_A Septum formation prote 100.0       0       0  380.3  13.2  185    2-195     9-207 (207)
  4 >1vp2_A Putative xanthosine tr  96.1   0.072 2.1E-06   32.2   9.5  116    1-129    12-145 (208)
  5 >2car_A Inosine triphosphate p  96.1   0.016 4.6E-07   36.4   6.1  112    1-127     8-135 (196)
  6 >1v7r_A Hypothetical protein P  95.7   0.062 1.8E-06   32.7   7.7  106    3-122     1-119 (186)
  7 >1b78_A Pyrophosphatase; struc  95.4   0.044 1.3E-06   33.6   6.0  108    1-123     7-128 (193)
  8 >1k7k_A Hypothetical protein Y  94.0    0.51 1.5E-05   26.9  10.1  107    3-119    24-149 (221)
  9 >1gtk_A Porphobilinogen deamin  67.0     6.6  0.0002   20.1   3.5   28    3-30     18-45  (90)
 10 >3ecr_A Porphobilinogen deamin  64.3     7.8 0.00023   19.6   3.5   28    4-31     23-50  (96)
 11 >1t1v_A SH3BGRL3, SH3 domain-b  51.7      17 0.00051   17.5   3.5   68    2-82      1-80  (93)
 12 >1p5j_A L-serine dehydratase;   28.8      33 0.00097   15.8   1.9   30    6-35     31-60  (80)
 13 >1v7c_A Threonine synthase; PL  26.5      40  0.0012   15.2   2.1   26   10-35     55-80  (109)
 14 >1v71_A Serine racemase, hypot  23.9      52  0.0015   14.5   3.3   28    8-35     38-65  (83)
 15 >1nd9_A Translation initiation  23.6      41  0.0012   15.2   1.6   20  178-197     9-28  (49)
 16 >3l6b_A Serine racemase; pyrid  23.6      53  0.0016   14.5   2.4   28    7-34     35-62  (82)
 17 >3iau_A Threonine deaminase; p  23.3      39  0.0011   15.3   1.5   28    8-35     53-80  (98)
 18 >3ist_A Glutamate racemase; st  21.4      59  0.0017   14.2   2.6   75    5-83     18-96  (112)
 19 >2rkb_A Serine dehydratase-lik  20.6      47  0.0014   14.8   1.5   27    8-34     33-59  (79)
 20 3cin_A Myo-Inositol-1-Phosphat  20.4      62  0.0018   14.1   2.8   64  129-197   144-214 (394)
 21 >1nm3_A Protein HI0572; hybrid  20.1      62  0.0018   14.0   3.1   35    1-35      2-41  (75)

No 1  
>>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} (A:)
Probab=100.00  E-value=0  Score=403.80  Aligned_cols=188  Identities=30%  Similarity=0.470  Sum_probs=181.1

Q ss_pred             CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHH
Q ss_conf             98754742699899999997898859975898843242201344579989998887654333210137754034134431
Q gi|254780813|r    1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTM   80 (199)
Q Consensus         1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv   80 (199)
                      |.++|||||+||||++||+++|++|++++|++||++++.       .+|.+++.++|..||+++..++|+.+||||||||
T Consensus         1 M~~~iILaS~Sp~R~~lL~~~g~~f~v~~~~idE~~~~~-------~~p~~~~~~lA~~KA~~v~~~~~~~~iI~aDtvv   73 (189)
T 1ex2_A            1 MTKPLILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRN-------FSPEENVQWLAKQKAKAVADLHPHAIVIGADTMV   73 (189)
T ss_dssp             CCCCEEECCCCHHHHHHHHTTCCCCEECCCCCCCCCCTT-------SCHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEE
T ss_conf             999999957999999999977998199679989899987-------9989999999999999999678998699727499


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             01234467610013469999985198037888665303786100468741100122205789999962068867332100
Q gi|254780813|r   81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY  160 (199)
Q Consensus        81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y  160 (199)
                      +++|+|+|||.|.++|++||+.|||++|.||||+|++.+++ .+.++++|+|+|+++++++|++|+++  ++|++|||||
T Consensus        74 ~~~~~i~~KP~~~~eA~~~L~~lsg~~h~v~T~v~i~~~~~-~~~~~~~t~v~f~~l~~~~I~~Yl~~--~e~~~kAGay  150 (189)
T 1ex2_A           74 CLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAENH-SETFYDKTEVAFWSLSEEEIWTYIET--KEPMDKAGAY  150 (189)
T ss_dssp             EETTEEECCCSSHHHHHHHHHHHTTSEEEEEEEEEEEETTE-EEEEEEEEEEEECCCCHHHHHHHHTT--TSGGGSTTSC
T ss_pred             EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCE-EEEEEEEEEEEECCCCHHHHHHHHHH--CCCCCEEEEE
T ss_conf             98999947999999999999982899669999999998998-99999999999898999999999970--9984638998


Q ss_pred             CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             00122332100011897532227699999999978989
Q gi|254780813|r  161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKVI  198 (199)
Q Consensus       161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gii  198 (199)
                      +|||.|..||++|+|||+||||||+.++.++|+++|+.
T Consensus       151 ~iqg~g~~~ie~I~G~~~nViGLPl~~l~~~L~~~g~~  188 (189)
T 1ex2_A          151 GIQGRGALFVKKIDGDYYSVMGLPISKTMRALRHFDIR  188 (189)
T ss_dssp             CSSGGGGGTEEEEESCHHHHHTCCHHHHHHHHTTC---
T ss_pred             ECCCCHHHCEEEEECCCCCEECCCHHHHHHHHHHCCCC
T ss_conf             41578113277788877722288499999999975999


No 2  
>>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 2.00A {Homo sapiens} (A:)
Probab=100.00  E-value=0  Score=398.38  Aligned_cols=190  Identities=29%  Similarity=0.475  Sum_probs=178.5

Q ss_pred             CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC------CCCCCEE
Q ss_conf             9875474269989999999789885997589884324220134457998999888765433321013------7754034
Q gi|254780813|r    1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNR------YPESFVI   74 (199)
Q Consensus         1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~------~~~~~VI   74 (199)
                      |+++|||||+||||++||+++|++|++++|+|||++.+.+     ..+|.+++.++|+.||+++.++      .|+.+||
T Consensus         2 ~~~~iILaS~SprR~elL~~~gi~f~v~~~~iDE~~~~~~-----~~~p~~~v~~lA~~KA~~v~~~~~~~~~~~~~iVI   76 (230)
T 2p5x_A            2 LHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKAS-----FATPYGYAMETAKQKALEVANRLYQKDLRAPDVVI   76 (230)
T ss_dssp             TTSCEEECCCCHHHHHHHHHTTCCCEECCCCCCCCCCGGG-----SSSHHHHHHHHHHHHHHHHHHHHHHHHSCCCSEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             9788899479999999998689982995689899987435-----58858999999987777776543201478876899


Q ss_pred             CHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCC-------CCEEEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             13443101234467610013469999985198037888665303786-------10046874110012220578999996
Q gi|254780813|r   75 GCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGK-------VLRHHISVAQLTMYKLSEEFIKFYLN  147 (199)
Q Consensus        75 ~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~-------~~~~~~~~t~v~f~~l~~~~I~~Yi~  147 (199)
                      ||||||+++|+|+|||.|.++|++||+.|||++|.||||+|++...+       .++.++++|+|+|+++++++|++|++
T Consensus        77 ~aDTvv~~~g~I~~KP~~~eeA~~~L~~lsg~~h~v~T~v~i~~~~~~~~~~~~~~~~~~~~t~V~f~~lsd~~I~~Yi~  156 (230)
T 2p5x_A           77 GADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVH  156 (230)
T ss_dssp             EEEEEEEETTEEECCCSSHHHHHHHHHHHTTSEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEECCCCHHHHHHHHH
T ss_pred             ECCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHC
T ss_conf             33750100574356988778997547762598742067899997058774334225678865379823799999999972


Q ss_pred             HCCCCCCCCCCEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             20688673321000012233210001189753222769999999997898
Q gi|254780813|r  148 KIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       148 ~~~~~~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      +  ++|++|||||+|||.|+.||++|+|||+||||||+.+|.++|+++|+
T Consensus       157 ~--~e~~~kAGay~Iqg~g~~~i~~I~Gd~~nVvGLPl~~l~~~L~~~g~  204 (230)
T 2p5x_A          157 S--GEPMDKAGGYGIQALGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYY  204 (230)
T ss_dssp             H--TGGGGSGGGCCSSSGGGGTEEEEEECHHHHHTCCHHHHHHHHHHHHC
T ss_pred             C--CCCCCEEEEEEECCCHHHCEEEEECCCCCEECCCHHHHHHHHHHCCC
T ss_conf             3--88670568998630755476432889653207799999999997699


No 3  
>>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} (A:)
Probab=100.00  E-value=0  Score=380.31  Aligned_cols=185  Identities=18%  Similarity=0.283  Sum_probs=171.9

Q ss_pred             CCCEEECCCCHHHHHHHHHCC----CCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--------C
Q ss_conf             875474269989999999789----8859975898843242201344579989998887654333210137--------7
Q gi|254780813|r    2 IKNIILASSSLSRRKLLQNSG----IQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRY--------P   69 (199)
Q Consensus         2 ~~~iILAS~S~~R~~lL~~~g----i~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~--------~   69 (199)
                      |++|||||+||||++||+++|    ++|++++|+|||+.++.       .+|.+++.++|..||+++..++        +
T Consensus         9 ~~~iILaS~SprR~~lL~~~Gi~~~~~F~~~~~~idE~~~~~-------~~p~e~v~~lA~~Ka~~v~~~~~~~~~~~~~   81 (207)
T 2amh_A            9 IRTMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRA-------ADPFELTESIARAKMKAVLEKARQHSPPISG   81 (207)
T ss_dssp             CCEEEECCCCHHHHHHHHHHHTTTCSEEEECCCCCCGGGCCC-------SSHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred             CCCEEEECCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             687899059999999999658777876598699989888777-------8979999999999898888777654224688


Q ss_pred             CCCEECHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCCCEEEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             5403413443101234467610013469999985198037888665303-786100468741100122205789999962
Q gi|254780813|r   70 ESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQ-NGKVLRHHISVAQLTMYKLSEEFIKFYLNK  148 (199)
Q Consensus        70 ~~~VI~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~-~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~  148 (199)
                      +.+||||||||+++|+|+|||.|+++|++||+.|||++|.||||+|++. +++.+|.++++|+|+|+++++++|++||++
T Consensus        82 ~~ivi~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsG~~h~v~T~v~l~~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~  161 (207)
T 2amh_A           82 PAIALTFDQVVVKGDEVREKPLSTEQCRSFIASYSGGGVRTVATYALCVVGTENVLVAHNETETFFSKFGDDIVERTLER  161 (207)
T ss_dssp             CEEEEEEEEEEEETTEEECSCSSHHHHHHHHHHHTTSEEEEEEEEEEEETTCSCEEEEEEEEEEEECCCCHHHHHHHHHH
T ss_pred             CCEEEEECCHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCHHHHHHHHHC
T ss_conf             74899823200213430369885278999999974995089999999968982799999768999725998999979854


Q ss_pred             CCCCCCCCCCEECCCCCHH-HHHHEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             0688673321000012233-2100011897532227699999999978
Q gi|254780813|r  149 IGKKALLSVGSYQIDKEGI-QLFSSIKGSYFSIVGLPIIELINDLKIE  195 (199)
Q Consensus       149 ~~~~~~~~aG~y~ie~~g~-~~i~~I~Gd~~~V~GLPi~~l~~~L~~~  195 (199)
                        ++|++|||||+|||.|+ .||++|+|||+||||||+.+|.++|+++
T Consensus       162 --~ep~~kAG~y~iq~~g~~~fi~~I~G~~~~ViGLPl~~l~~~L~~l  207 (207)
T 2amh_A          162 --GACMNSAGGLVVEDEDMSRHVVRIVGTSYGVRGMEPAVVEKLLSQL  207 (207)
T ss_dssp             --CGGGGSGGGCCTTSHHHHTTEEEEESCHHHHHTCCHHHHHHHHHTC
T ss_pred             --CCCCCEEEEEEEECCCHHHCEEEEECCCCCEECCCHHHHHHHHHCC
T ss_conf             --9975140899997074110772428893110598899999999629


No 4  
>>1vp2_A Putative xanthosine triphosphate pyrophosphatase/HAM1 protein homolog; TM0159; 1.78A {Thermotoga maritima} (A:)
Probab=96.15  E-value=0.072  Score=32.23  Aligned_cols=116  Identities=13%  Similarity=0.103  Sum_probs=70.7

Q ss_pred             CCC--CEEECCCCHHHHHHHHH-CCCCCEEECCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             987--54742699899999997-89885997589--88432422013445799899988876543332101377540341
Q gi|254780813|r    1 MIK--NIILASSSLSRRKLLQN-SGIQFSVVKPN--IDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIG   75 (199)
Q Consensus         1 m~~--~iILAS~S~~R~~lL~~-~gi~f~~~~~~--iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~   75 (199)
                      ||+  +|++||+-+...+=++. +...+++++..  +|....        +.+    -...|..||+.+..... ..||+
T Consensus        12 ~m~km~i~~aT~N~~K~~E~~~iL~~~~~i~~~~~~~~~~E~--------~~t----~~enA~~KA~~~~~~~~-~pvi~   78 (208)
T 1vp2_A           12 HMKKLTVYLATTNPHKVEEIKMIAPEWMEILPSPEKIEVVED--------GET----FLENSVKKAVVYGKKLK-HPVMA   78 (208)
T ss_dssp             ---CEEEEESCCCHHHHHHHHTTCCTTEEEEECSSCCCCCCC--------CSS----HHHHHHHHHHHHHHHHC-SCEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCC--------CCC----HHHHHHHHHHHCCCCCC-CEEEE
T ss_conf             635777999959889999999984059888304645777766--------835----88888765430013344-23787


Q ss_pred             HHHHHCCC---CC--C----CCCC-CHHHHHHHHHHHHCCC--CEEEEEEEEECCC-CCCCEEEEEE
Q ss_conf             34431012---34--4----6761-0013469999985198--0378886653037-8610046874
Q gi|254780813|r   76 CDQTMSLG---SS--I----YHKP-VDMLEAEKNLLRISGK--KHRISSAYVLVQN-GKVLRHHISV  129 (199)
Q Consensus        76 aDtvv~~~---g~--i----~~KP-~~~~eA~~~L~~lsg~--~h~v~T~~~i~~~-~~~~~~~~~~  129 (199)
                      -||=+.++   |.  +    +-++ .+.+.....|+.+.|.  +.++.|.++++.+ +..+..+..+
T Consensus        79 dDSGL~i~aL~g~PGiys~r~~~~~~~~~~~~~ll~~l~~~~r~A~~~~~i~~~~~~g~~~~~f~G~  145 (208)
T 1vp2_A           79 DDSGLVIYSLGGFPGVMSARFMEEHSYKEKMRTILKMLEGKDRRAAFVCSATFFDPVENTLISVEDR  145 (208)
T ss_dssp             EEEEEEEGGGTTEEGGGTTTTTTTSCHHHHHHHHHHHTTTSCCEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             ECCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCEEEEEEE
T ss_conf             2435410224443678899998607841257889874236555422021245442024420468324


No 5  
>>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine triphosphate pyrophosphohydrolase, inosine triphosphatase deficiency, ITP, IMP; 1.09A {Homo sapiens} (A:)
Probab=96.14  E-value=0.016  Score=36.35  Aligned_cols=112  Identities=16%  Similarity=0.120  Sum_probs=69.1

Q ss_pred             CCCCEEECCCCHHH----HHHHHHCCCCC-EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             98754742699899----99999789885-99758988432422013445799899988876543332101377540341
Q gi|254780813|r    1 MIKNIILASSSLSR----RKLLQNSGIQF-SVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIG   75 (199)
Q Consensus         1 m~~~iILAS~S~~R----~~lL~~~gi~f-~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~   75 (199)
                      ||++|++||+.+..    +++|..+++.. .....+++|...          ++    ...|..||+.++.... ..||+
T Consensus         8 ~~~~i~~aT~N~~K~~E~~~il~~~~~~~i~~~~~d~~E~~~----------t~----~enA~~KA~~~~~~~~-~pvia   72 (196)
T 2car_A            8 VGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQG----------EP----DEISIQKCQEAVRQVQ-GPVLV   72 (196)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHCTTCCSEEEEECCCCCCBCS----------CH----HHHHHHHHHHHHHHHS-SCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHCCCCCCCCC----------CH----HHHHHHHHHHHHHHHH-HHHEE
T ss_conf             499799983998999999998315077010320179887688----------61----7888876677777665-55200


Q ss_pred             HHHHHCCC---CC--CCCCCCH-HHHHHHHHHHHCC---CCEEEEEEEEECC--CCCCCEEEE
Q ss_conf             34431012---34--4676100-1346999998519---8037888665303--786100468
Q gi|254780813|r   76 CDQTMSLG---SS--IYHKPVD-MLEAEKNLLRISG---KKHRISSAYVLVQ--NGKVLRHHI  127 (199)
Q Consensus        76 aDtvv~~~---g~--i~~KP~~-~~eA~~~L~~lsg---~~h~v~T~~~i~~--~~~~~~~~~  127 (199)
                      -||=++++   |.  ++.|.-. .......|..+++   ++.+..+.++++.  +++.+..+.
T Consensus        73 DDSGL~i~aL~g~PGvys~r~~~~~~~~~ll~~l~~~~~r~a~~~~~~~~~~~~~~~~~~~f~  135 (196)
T 2car_A           73 EDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFR  135 (196)
T ss_dssp             EEEEEEEGGGTTCEETTHHHHHHHHHHHHHHHTTTTCSCCEEEEEEEEEEECSCSSCCCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEEE
T ss_conf             002546767765567886999985103667777405654542268999986045688733899


No 6  
>>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii OT3} (A:)
Probab=95.74  E-value=0.062  Score=32.65  Aligned_cols=106  Identities=16%  Similarity=0.180  Sum_probs=64.4

Q ss_pred             CCEEECCCCHHHHH----HHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHH
Q ss_conf             75474269989999----99978988599758988432422013445799899988876543332101377540341344
Q gi|254780813|r    3 KNIILASSSLSRRK----LLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQ   78 (199)
Q Consensus         3 ~~iILAS~S~~R~~----lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDt   78 (199)
                      .+|++||+-+...+    +|..+|++....+.++.|..-         .+    -..+|..||+.+..... ..||+-||
T Consensus         1 Mki~~aT~N~~K~~E~~~~L~~~~i~v~~~~~~~~ee~~---------~t----~~enA~~KA~~~~~~~~-~pviadDs   66 (186)
T 1v7r_A            1 MKIFFITSNPGKVREVANFLGTFGIEIVQLKHEYPEIQA---------EK----LEDVVDFGISWLKGKVP-EPFMIEDS   66 (186)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTCEEEEECCCCCCCCC---------SS----HHHHHHHHHHHHTTTSC-SSEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC---------CC----HHHHHHHHHHHHHHHCC-CEEEECCH
T ss_conf             979998699899999999860659769865765765456---------31----77899999987653302-02661521


Q ss_pred             HHCC---CCC--CCCCCCH-HHHHHHHHHHHCC---CCEEEEEEEEECCCCCC
Q ss_conf             3101---234--4676100-1346999998519---80378886653037861
Q gi|254780813|r   79 TMSL---GSS--IYHKPVD-MLEAEKNLLRISG---KKHRISSAYVLVQNGKV  122 (199)
Q Consensus        79 vv~~---~g~--i~~KP~~-~~eA~~~L~~lsg---~~h~v~T~~~i~~~~~~  122 (199)
                      -+.+   +|.  ++.|.-. .......|..++|   ++.++.+.+|++.+++.
T Consensus        67 GL~i~aL~g~PGv~s~r~~~~~~~~~ll~~l~~~~~R~A~~~~~i~~~~~~~~  119 (186)
T 1v7r_A           67 GLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYIDGKA  119 (186)
T ss_dssp             EEEEGGGTTTBGGGHHHHHHHTHHHHHHHHTTTCSCCEEEEEEEEEEEETTEE
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCE
T ss_conf             10234307855321366776567767888602504567888641012478724


No 7  
>>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A {Methanococcus jannaschii} (A:)
Probab=95.41  E-value=0.044  Score=33.58  Aligned_cols=108  Identities=19%  Similarity=0.029  Sum_probs=66.6

Q ss_pred             CCCCEEECCCCHHHHHHHHH----CCCC-CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             98754742699899999997----8988-599758988432422013445799899988876543332101377540341
Q gi|254780813|r    1 MIKNIILASSSLSRRKLLQN----SGIQ-FSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIG   75 (199)
Q Consensus         1 m~~~iILAS~S~~R~~lL~~----~gi~-f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~   75 (199)
                      ||++|++||+-+...+=++.    +++. ......+++|..          .++    ..+|..||+.+..... ..||+
T Consensus         7 ~m~ki~~aT~N~~K~~E~~~il~~~~~~~i~~~~~d~~E~~----------~t~----~enA~~KA~~~~~~~~-~pvi~   71 (193)
T 1b78_A            7 EIMKIYFATGNPNKIKEANIILKDLKDVEIEQIKISYPEIQ----------GTL----EEVAEFGAKWVYNILK-KPVIV   71 (193)
T ss_dssp             ---CEEEECSCHHHHHHHHHHTTTCTTCCEEEECCCCCCBS----------SCH----HHHHHHHHHHHHHHHC-SCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCC----------CCH----HHHHHHHHHHHHHHCC-CEEEE
T ss_conf             74079998898789999999875578742021376886446----------525----6777888998875213-32785


Q ss_pred             HHHHHCC---CCC--CCCCCCHHH-HHHHHHHHHC---CCCEEEEEEEEECCCCCCC
Q ss_conf             3443101---234--467610013-4699999851---9803788866530378610
Q gi|254780813|r   76 CDQTMSL---GSS--IYHKPVDML-EAEKNLLRIS---GKKHRISSAYVLVQNGKVL  123 (199)
Q Consensus        76 aDtvv~~---~g~--i~~KP~~~~-eA~~~L~~ls---g~~h~v~T~~~i~~~~~~~  123 (199)
                      -||=+.+   +|.  ++.|.-... .....|..++   +++..+.+.+|++.+++..
T Consensus        72 dDsGL~i~aL~g~PG~ys~~~~~~~~~~~ll~~l~~~~~R~A~~~~~i~~~~~~~~~  128 (193)
T 1b78_A           72 EDSGFFVEALNGFPGTYSKFVQETIGNEGILKLLEGKDNRNAYFKTVIGYCDENGVR  128 (193)
T ss_dssp             EEEEEEEGGGTTCEETTHHHHHHHTHHHHHHHHHTTCSCCEEEEEEEEEEEETTEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             061114667754445661998875785999998641012556750232320158506


No 8  
>>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered Se-Met, structural genomics, putative ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia coli} (A:)
Probab=93.96  E-value=0.51  Score=26.94  Aligned_cols=107  Identities=16%  Similarity=0.211  Sum_probs=64.3

Q ss_pred             CCEEECCCCHHHHHHHHH-C-CCCCEEEC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHH
Q ss_conf             754742699899999997-8-98859975-89884324220134457998999888765433321013775403413443
Q gi|254780813|r    3 KNIILASSSLSRRKLLQN-S-GIQFSVVK-PNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQT   79 (199)
Q Consensus         3 ~~iILAS~S~~R~~lL~~-~-gi~f~~~~-~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtv   79 (199)
                      ++|++||+-+...+=++. + .+++++++ .+++....+.     .+.++    ..+|..||+.+..... ..||+-||=
T Consensus        24 mki~~aT~N~~K~~E~~~iL~~~~iei~~l~~~~~~~~ee-----~g~t~----~enA~~KA~~~~~~~~-~pviaDDSG   93 (221)
T 1k7k_A           24 QKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEE-----TGLTF----IENAILKARHAAKVTA-LPAIADDSG   93 (221)
T ss_dssp             EEEEESCCCHHHHHHHHHHHGGGTEEEEETTTTTCCCCCC-----CCSSH----HHHHHHHHHHHHHHHS-SCEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCC-----CCCCH----HHHHHHHHHHHHHHCC-CCEEEECCE
T ss_conf             8899993987899999997323498798612149887776-----77106----8888995999986058-875970657


Q ss_pred             HCCC---CC--CCCCC------CHHHHHHHHHHHHCC-----CCEEEEEEEEECCC
Q ss_conf             1012---34--46761------001346999998519-----80378886653037
Q gi|254780813|r   80 MSLG---SS--IYHKP------VDMLEAEKNLLRISG-----KKHRISSAYVLVQN  119 (199)
Q Consensus        80 v~~~---g~--i~~KP------~~~~eA~~~L~~lsg-----~~h~v~T~~~i~~~  119 (199)
                      ++++   |.  ++.|.      .+.+.-.+.|..+.+     ++.++.|.+|++.+
T Consensus        94 L~i~aL~g~PGvys~r~~~~~~~~~~~~~~Ll~~l~~~~~~~R~A~f~~~i~~~~p  149 (221)
T 1k7k_A           94 LAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETXKDVPDDQRQARFHCVLVYLRH  149 (221)
T ss_dssp             EEEGGGTTCBGGGSTTTTCTTCCHHHHHHHHHHHTTTSCGGGCEEEEEEEEEEESS
T ss_pred             EEEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECC
T ss_conf             99944069970142998644686899999999986478823124769999998626


No 9  
>>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} (A:104-193)
Probab=66.95  E-value=6.6  Score=20.06  Aligned_cols=28  Identities=21%  Similarity=0.203  Sum_probs=22.8

Q ss_pred             CCEEECCCCHHHHHHHHHCCCCCEEECC
Q ss_conf             7547426998999999978988599758
Q gi|254780813|r    3 KNIILASSSLSRRKLLQNSGIQFSVVKP   30 (199)
Q Consensus         3 ~~iILAS~S~~R~~lL~~~gi~f~~~~~   30 (199)
                      +..+.|++|+||+..|....-++++.+-
T Consensus        18 ~ga~IGTSS~RR~aql~~~~Pdl~~~~i   45 (90)
T 1gtk_A           18 AGSIVGTSSLRRQCQLAERRPDLIIRSL   45 (90)
T ss_dssp             TTCEEECCCHHHHHHHHHHCTTSEEECC
T ss_pred             CCCEEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf             9996544878999999985899749997


No 10 
>>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* (A:121-216)
Probab=64.34  E-value=7.8  Score=19.62  Aligned_cols=28  Identities=21%  Similarity=0.178  Sum_probs=22.3

Q ss_pred             CEEECCCCHHHHHHHHHCCCCCEEECCC
Q ss_conf             5474269989999999789885997589
Q gi|254780813|r    4 NIILASSSLSRRKLLQNSGIQFSVVKPN   31 (199)
Q Consensus         4 ~iILAS~S~~R~~lL~~~gi~f~~~~~~   31 (199)
                      .-+.|++|+||+..|....-++++.+-.
T Consensus        23 ga~IGTSS~RR~aql~~~~Pdl~~~~iR   50 (96)
T 3ecr_A           23 KSVVGTSSLRRAAQLQRKFPHLEFRSIR   50 (96)
T ss_dssp             TCEEECCCHHHHHHHHHHCTTSEEECCC
T ss_pred             HHEECCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf             3221456642589999867854402555


No 11 
>>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein- like 3; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} (A:)
Probab=51.74  E-value=17  Score=17.49  Aligned_cols=68  Identities=16%  Similarity=0.156  Sum_probs=34.4

Q ss_pred             CCCEEECCCC--HHH---------HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf             8754742699--899---------9999978988599758988432422013445799899988876543332101377-
Q gi|254780813|r    2 IKNIILASSS--LSR---------RKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYP-   69 (199)
Q Consensus         2 ~~~iILAS~S--~~R---------~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~-   69 (199)
                      |.+|++-|+|  |.|         +++|+..+++|+.+--+-|+..             .+....++......+...+- 
T Consensus         1 m~~V~iy~~~~cp~~~~~~~c~~~k~~L~~~~v~~~~idi~~~~~~-------------~~~~~~~~~~g~~tvP~ifi~   67 (93)
T 1t1v_A            1 MSGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNAL-------------RDEMRTLAGNPKATPPQIVNG   67 (93)
T ss_dssp             CCCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHH-------------HHHHHHHTTCTTCCSCEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH-------------HHHHHHHCCCCCCEEEEEEEC
T ss_conf             9988999877866415899999999999987996399994587202-------------336666416898358899999


Q ss_pred             CCCEECHHHHHCC
Q ss_conf             5403413443101
Q gi|254780813|r   70 ESFVIGCDQTMSL   82 (199)
Q Consensus        70 ~~~VI~aDtvv~~   82 (199)
                      +..|-|+|.+...
T Consensus        68 g~~iGg~d~l~~l   80 (93)
T 1t1v_A           68 NHYCGDYELFVEA   80 (93)
T ss_dssp             TEEEEEHHHHHHH
T ss_pred             CEEEECHHHHHHH
T ss_conf             9998459999999


No 12 
>>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} (A:93-172)
Probab=28.80  E-value=33  Score=15.75  Aligned_cols=30  Identities=23%  Similarity=0.280  Sum_probs=22.7

Q ss_pred             EECCCCHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf             742699899999997898859975898843
Q gi|254780813|r    6 ILASSSLSRRKLLQNSGIQFSVVKPNIDER   35 (199)
Q Consensus         6 ILAS~S~~R~~lL~~~gi~f~~~~~~iDE~   35 (199)
                      +=.+.|+.|+++|+.+|-+....+.+.||.
T Consensus        31 ~p~~~~~~k~~~l~~~GA~V~~~~~~~~~~   60 (80)
T 1p5j_A           31 VPGTTPALTIERLKNEGATCKVVGELLDEA   60 (80)
T ss_dssp             ECTTCCHHHHHHHHHTTCEEEECCSCHHHH
T ss_pred             CCCCCCHHHEECCCCCCEEEEEECCCCCHH
T ss_conf             268884453112345742899831221046


No 13 
>>1v7c_A Threonine synthase; PLP-dependent enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: HEY; 2.00A {Thermus thermophilus} (A:58-166)
Probab=26.54  E-value=40  Score=15.21  Aligned_cols=26  Identities=19%  Similarity=0.226  Sum_probs=19.6

Q ss_pred             CCHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf             99899999997898859975898843
Q gi|254780813|r   10 SSLSRRKLLQNSGIQFSVVKPNIDER   35 (199)
Q Consensus        10 ~S~~R~~lL~~~gi~f~~~~~~iDE~   35 (199)
                      .|+.|+++++.+|-+....+.++||.
T Consensus        55 ~~~~k~~~~~~~Ga~v~~~~~~~~~~   80 (109)
T 1v7c_A           55 VALGKVAQSLVHGARIVQVEGNFDDA   80 (109)
T ss_dssp             SCHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             HHHHHHHHHHCCCCCEEECCCCCCCH
T ss_conf             35554333312796057416754201


No 14 
>>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} (A:69-151)
Probab=23.91  E-value=52  Score=14.49  Aligned_cols=28  Identities=14%  Similarity=0.106  Sum_probs=21.1

Q ss_pred             CCCCHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf             2699899999997898859975898843
Q gi|254780813|r    8 ASSSLSRRKLLQNSGIQFSVVKPNIDER   35 (199)
Q Consensus         8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~   35 (199)
                      ...++.|+++|+.+|-+....+.+++|.
T Consensus        38 ~~~~~~k~~~l~~~GA~Vi~~~~~~~~~   65 (83)
T 1v71_A           38 LDAPEAKVAATKGYGGQVIMYDRYKDDR   65 (83)
T ss_dssp             TTCCHHHHHHHHHTTCEEEEECTTTTCH
T ss_pred             CCCCHHHHHHHHHHCCCEEEECCCCCHH
T ss_conf             5321899999998289379966872067


No 15 
>>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} (A:)
Probab=23.61  E-value=41  Score=15.17  Aligned_cols=20  Identities=5%  Similarity=0.027  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHHHCCC
Q ss_conf             53222769999999997898
Q gi|254780813|r  178 FSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       178 ~~V~GLPi~~l~~~L~~~gi  197 (199)
                      -..+|.|+..|++.|+..||
T Consensus         9 A~ev~~~vdrLleQl~~AGi   28 (49)
T 1nd9_A            9 AAERQTSVERLVQQFADAGI   28 (49)
T ss_dssp             HHHHSSSHHHHHHHHHHHTS
T ss_pred             HHHHCCCHHHHHHHHHHCCC
T ss_conf             99989599999999999289


No 16 
>>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* (A:73-154)
Probab=23.56  E-value=53  Score=14.45  Aligned_cols=28  Identities=11%  Similarity=0.189  Sum_probs=18.6

Q ss_pred             ECCCCHHHHHHHHHCCCCCEEECCCCCC
Q ss_conf             4269989999999789885997589884
Q gi|254780813|r    7 LASSSLSRRKLLQNSGIQFSVVKPNIDE   34 (199)
Q Consensus         7 LAS~S~~R~~lL~~~gi~f~~~~~~iDE   34 (199)
                      =.+.|+.|+++|+.+|-.....+.++||
T Consensus        35 p~~~~~~k~~~l~~~GA~Vi~~~~~~~~   62 (82)
T 3l6b_A           35 PQTAPDCKKLAIQAYGASIVYCEPSDES   62 (82)
T ss_dssp             ETTSCHHHHHHHHHTTCEEEEECSSHHH
T ss_pred             CHHHHHHHHHHHHCCCCCEEECCCCHHH
T ss_conf             6056789988875168743870550456


No 17 
>>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive protein, jasmonic acid pathway; HET: LLP 15P; 2.35A {Solanum lycopersicum} (A:88-185)
Probab=23.26  E-value=39  Score=15.32  Aligned_cols=28  Identities=11%  Similarity=0.138  Sum_probs=18.7

Q ss_pred             CCCCHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf             2699899999997898859975898843
Q gi|254780813|r    8 ASSSLSRRKLLQNSGIQFSVVKPNIDER   35 (199)
Q Consensus         8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~   35 (199)
                      ...|+.|++.|+.+|-+....+++.+|.
T Consensus        53 ~~~~~~k~~~l~~~GA~Vi~~~~~~~~~   80 (98)
T 3iau_A           53 TTTPQIKIDAVRALGGDVVLYGKTFDEA   80 (98)
T ss_dssp             TTCCHHHHHHHHHTTCEEEECCSSHHHH
T ss_pred             CCCCHHHHHHHHHHCCCEEECCCCHHHH
T ss_conf             8887999999997177612214554779


No 18 
>>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A* (A:98-209)
Probab=21.42  E-value=59  Score=14.19  Aligned_cols=75  Identities=12%  Similarity=0.083  Sum_probs=38.2

Q ss_pred             EEECCCCHHHH----HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHH
Q ss_conf             47426998999----99997898859975898843242201344579989998887654333210137754034134431
Q gi|254780813|r    5 IILASSSLSRR----KLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTM   80 (199)
Q Consensus         5 iILAS~S~~R~----~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv   80 (199)
                      .+||+..-.+.    +.+.+.|+.+.+.+....+.....+  .  +..-...+..+-+........+..+.+|+||=-+-
T Consensus        18 gvlaT~~Ti~s~~y~~~l~~~g~~~~v~~~~~~~lv~~~~--~--~~~~~~~~~~~l~~~l~~l~~~~~d~iILgCTe~P   93 (112)
T 3ist_A           18 GVLGTLGTVESXAYPTALKGLNRRVEVDSLACPKFVSVVE--S--GEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYP   93 (112)
T ss_dssp             EEEECHHHHHHTHHHHHHHHHCTTCEEEEEECHHHHHHHH--T--TCTTSHHHHHHHHHHHGGGGGSCCCEEEECSTTGG
T ss_pred             EEEECHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH--C--CCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
T ss_conf             9995103442367788876216753899833637889987--3--56585999999999876530345776997774458


Q ss_pred             CCC
Q ss_conf             012
Q gi|254780813|r   81 SLG   83 (199)
Q Consensus        81 ~~~   83 (199)
                      ...
T Consensus        94 li~   96 (112)
T 3ist_A           94 LLK   96 (112)
T ss_dssp             GGH
T ss_pred             HHH
T ss_conf             888


No 19 
>>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cancer cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} (A:54-132)
Probab=20.58  E-value=47  Score=14.77  Aligned_cols=27  Identities=30%  Similarity=0.309  Sum_probs=17.1

Q ss_pred             CCCCHHHHHHHHHCCCCCEEECCCCCC
Q ss_conf             269989999999789885997589884
Q gi|254780813|r    8 ASSSLSRRKLLQNSGIQFSVVKPNIDE   34 (199)
Q Consensus         8 AS~S~~R~~lL~~~gi~f~~~~~~iDE   34 (199)
                      .+.|+.|.++++.+|-+....+.+.||
T Consensus        33 ~~~~~~k~~~~~~~Ga~Vi~~~~~~~~   59 (79)
T 2rkb_A           33 ESTSLQVVQRLQGEGAEVQLTGKVWDE   59 (79)
T ss_dssp             TTCCHHHHHHHHHTTCEEEECCSSHHH
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             210226777652048642235753110


No 20 
>3cin_A Myo-Inositol-1-Phosphate Synthase- Related Protein (Tm1419) {Thermotoga Maritima} (A:)
Probab=20.39  E-value=62  Score=14.05  Aligned_cols=64  Identities=13%  Similarity=0.059  Sum_probs=41.9

Q ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCCCC-------HHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             4110012220578999996206886733210000122-------33210001189753222769999999997898
Q gi|254780813|r  129 VAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKE-------GIQLFSSIKGSYFSIVGLPIIELINDLKIEKV  197 (199)
Q Consensus       129 ~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y~ie~~-------g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi  197 (199)
                      .|+-....-+.+++..+++++..+.....--|++-..       |..|   |+|.++++...|  .+.++.++.|+
T Consensus       144 sTE~~~p~~~~~~~~~a~~~~~~e~i~aS~~YA~Aal~eaa~~aG~~f---vN~tPs~~~~~P--~l~ela~~~gv  214 (394)
T 3cin_A          144 TTEAFVPFGNKEDLLKAIENNDKERLTATQVYAYAAALYANKRGGAAF---VNVIPTFIANDP--AFVELAKENNL  214 (394)
T ss_dssp             CCCCCCCCSSHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHTCEEE---EECSSSCSTTCH--HHHHHHHHTTE
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCE---ECCCCCCCCCCH--HHHHHHHHCCC
T ss_conf             887789998889999997326765677215999999999986278835---326776666758--99999996798


No 21 
>>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} (A:167-241)
Probab=20.14  E-value=62  Score=14.02  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=24.7

Q ss_pred             CCCCEEECCCC--H---HHHHHHHHCCCCCEEECCCCCCC
Q ss_conf             98754742699--8---99999997898859975898843
Q gi|254780813|r    1 MIKNIILASSS--L---SRRKLLQNSGIQFSVVKPNIDER   35 (199)
Q Consensus         1 m~~~iILAS~S--~---~R~~lL~~~gi~f~~~~~~iDE~   35 (199)
                      |+++|+|-|.+  |   +=+.+|+..|++|+.+.-+-|+.
T Consensus         2 ~~~~v~ly~~~~C~~c~~~~~~L~~~gi~~~~~~i~~~~~   41 (75)
T 1nm3_A            2 VQESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDAT   41 (75)
T ss_dssp             CCCCEEEEECSSCHHHHHHHHHHHHHTCCCEEEETTTTCC
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCHH
T ss_conf             6866999854889759999999997499849999998889


Done!