Query gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 199 No_of_seqs 107 out of 3404 Neff 6.6 Searched_HMMs 33803 Date Wed Jun 1 13:36:56 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780813.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ex2_A Protein MAF; structura 100.0 0 0 403.8 15.4 188 1-198 1-188 (189) 2 >2p5x_A ASMTL, N-acetylseroton 100.0 0 0 398.4 14.6 190 1-197 2-204 (230) 3 >2amh_A Septum formation prote 100.0 0 0 380.3 13.2 185 2-195 9-207 (207) 4 >1vp2_A Putative xanthosine tr 96.1 0.072 2.1E-06 32.2 9.5 116 1-129 12-145 (208) 5 >2car_A Inosine triphosphate p 96.1 0.016 4.6E-07 36.4 6.1 112 1-127 8-135 (196) 6 >1v7r_A Hypothetical protein P 95.7 0.062 1.8E-06 32.7 7.7 106 3-122 1-119 (186) 7 >1b78_A Pyrophosphatase; struc 95.4 0.044 1.3E-06 33.6 6.0 108 1-123 7-128 (193) 8 >1k7k_A Hypothetical protein Y 94.0 0.51 1.5E-05 26.9 10.1 107 3-119 24-149 (221) 9 >1gtk_A Porphobilinogen deamin 67.0 6.6 0.0002 20.1 3.5 28 3-30 18-45 (90) 10 >3ecr_A Porphobilinogen deamin 64.3 7.8 0.00023 19.6 3.5 28 4-31 23-50 (96) 11 >1t1v_A SH3BGRL3, SH3 domain-b 51.7 17 0.00051 17.5 3.5 68 2-82 1-80 (93) 12 >1p5j_A L-serine dehydratase; 28.8 33 0.00097 15.8 1.9 30 6-35 31-60 (80) 13 >1v7c_A Threonine synthase; PL 26.5 40 0.0012 15.2 2.1 26 10-35 55-80 (109) 14 >1v71_A Serine racemase, hypot 23.9 52 0.0015 14.5 3.3 28 8-35 38-65 (83) 15 >1nd9_A Translation initiation 23.6 41 0.0012 15.2 1.6 20 178-197 9-28 (49) 16 >3l6b_A Serine racemase; pyrid 23.6 53 0.0016 14.5 2.4 28 7-34 35-62 (82) 17 >3iau_A Threonine deaminase; p 23.3 39 0.0011 15.3 1.5 28 8-35 53-80 (98) 18 >3ist_A Glutamate racemase; st 21.4 59 0.0017 14.2 2.6 75 5-83 18-96 (112) 19 >2rkb_A Serine dehydratase-lik 20.6 47 0.0014 14.8 1.5 27 8-34 33-59 (79) 20 3cin_A Myo-Inositol-1-Phosphat 20.4 62 0.0018 14.1 2.8 64 129-197 144-214 (394) 21 >1nm3_A Protein HI0572; hybrid 20.1 62 0.0018 14.0 3.1 35 1-35 2-41 (75) No 1 >>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} (A:) Probab=100.00 E-value=0 Score=403.80 Aligned_cols=188 Identities=30% Similarity=0.470 Sum_probs=181.1 Q ss_pred CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHH Q ss_conf 98754742699899999997898859975898843242201344579989998887654333210137754034134431 Q gi|254780813|r 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTM 80 (199) Q Consensus 1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv 80 (199) |.++|||||+||||++||+++|++|++++|++||++++. .+|.+++.++|..||+++..++|+.+|||||||| T Consensus 1 M~~~iILaS~Sp~R~~lL~~~g~~f~v~~~~idE~~~~~-------~~p~~~~~~lA~~KA~~v~~~~~~~~iI~aDtvv 73 (189) T 1ex2_A 1 MTKPLILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRN-------FSPEENVQWLAKQKAKAVADLHPHAIVIGADTMV 73 (189) T ss_dssp CCCCEEECCCCHHHHHHHHTTCCCCEECCCCCCCCCCTT-------SCHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEE T ss_pred CCCCEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEE T ss_conf 999999957999999999977998199679989899987-------9989999999999999999678998699727499 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 01234467610013469999985198037888665303786100468741100122205789999962068867332100 Q gi|254780813|r 81 SLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSY 160 (199) Q Consensus 81 ~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y 160 (199) +++|+|+|||.|.++|++||+.|||++|.||||+|++.+++ .+.++++|+|+|+++++++|++|+++ ++|++||||| T Consensus 74 ~~~~~i~~KP~~~~eA~~~L~~lsg~~h~v~T~v~i~~~~~-~~~~~~~t~v~f~~l~~~~I~~Yl~~--~e~~~kAGay 150 (189) T 1ex2_A 74 CLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAENH-SETFYDKTEVAFWSLSEEEIWTYIET--KEPMDKAGAY 150 (189) T ss_dssp EETTEEECCCSSHHHHHHHHHHHTTSEEEEEEEEEEEETTE-EEEEEEEEEEEECCCCHHHHHHHHTT--TSGGGSTTSC T ss_pred EECCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCE-EEEEEEEEEEEECCCCHHHHHHHHHH--CCCCCEEEEE T ss_conf 98999947999999999999982899669999999998998-99999999999898999999999970--9984638998 Q ss_pred CCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 00122332100011897532227699999999978989 Q gi|254780813|r 161 QIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKVI 198 (199) Q Consensus 161 ~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gii 198 (199) +|||.|..||++|+|||+||||||+.++.++|+++|+. T Consensus 151 ~iqg~g~~~ie~I~G~~~nViGLPl~~l~~~L~~~g~~ 188 (189) T 1ex2_A 151 GIQGRGALFVKKIDGDYYSVMGLPISKTMRALRHFDIR 188 (189) T ss_dssp CSSGGGGGTEEEEESCHHHHHTCCHHHHHHHHTTC--- T ss_pred ECCCCHHHCEEEEECCCCCEECCCHHHHHHHHHHCCCC T ss_conf 41578113277788877722288499999999975999 No 2 >>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 2.00A {Homo sapiens} (A:) Probab=100.00 E-value=0 Score=398.38 Aligned_cols=190 Identities=29% Similarity=0.475 Sum_probs=178.5 Q ss_pred CCCCEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC------CCCCCEE Q ss_conf 9875474269989999999789885997589884324220134457998999888765433321013------7754034 Q gi|254780813|r 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNR------YPESFVI 74 (199) Q Consensus 1 m~~~iILAS~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~------~~~~~VI 74 (199) |+++|||||+||||++||+++|++|++++|+|||++.+.+ ..+|.+++.++|+.||+++.++ .|+.+|| T Consensus 2 ~~~~iILaS~SprR~elL~~~gi~f~v~~~~iDE~~~~~~-----~~~p~~~v~~lA~~KA~~v~~~~~~~~~~~~~iVI 76 (230) T 2p5x_A 2 LHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKAS-----FATPYGYAMETAKQKALEVANRLYQKDLRAPDVVI 76 (230) T ss_dssp TTSCEEECCCCHHHHHHHHHTTCCCEECCCCCCCCCCGGG-----SSSHHHHHHHHHHHHHHHHHHHHHHHHSCCCSEEE T ss_pred CCCCEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 9788899479999999998689982995689899987435-----58858999999987777776543201478876899 Q ss_pred CHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCC-------CCEEEEEEEEEECCCCCHHHHHHHHH Q ss_conf 13443101234467610013469999985198037888665303786-------10046874110012220578999996 Q gi|254780813|r 75 GCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGK-------VLRHHISVAQLTMYKLSEEFIKFYLN 147 (199) Q Consensus 75 ~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~~~~-------~~~~~~~~t~v~f~~l~~~~I~~Yi~ 147 (199) ||||||+++|+|+|||.|.++|++||+.|||++|.||||+|++...+ .++.++++|+|+|+++++++|++|++ T Consensus 77 ~aDTvv~~~g~I~~KP~~~eeA~~~L~~lsg~~h~v~T~v~i~~~~~~~~~~~~~~~~~~~~t~V~f~~lsd~~I~~Yi~ 156 (230) T 2p5x_A 77 GADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVH 156 (230) T ss_dssp EEEEEEEETTEEECCCSSHHHHHHHHHHHTTSEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEECCCCHHHHHHHHH T ss_pred ECCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHC T ss_conf 33750100574356988778997547762598742067899997058774334225678865379823799999999972 Q ss_pred HCCCCCCCCCCEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 20688673321000012233210001189753222769999999997898 Q gi|254780813|r 148 KIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 148 ~~~~~~~~~aG~y~ie~~g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) + ++|++|||||+|||.|+.||++|+|||+||||||+.+|.++|+++|+ T Consensus 157 ~--~e~~~kAGay~Iqg~g~~~i~~I~Gd~~nVvGLPl~~l~~~L~~~g~ 204 (230) T 2p5x_A 157 S--GEPMDKAGGYGIQALGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYY 204 (230) T ss_dssp H--TGGGGSGGGCCSSSGGGGTEEEEEECHHHHHTCCHHHHHHHHHHHHC T ss_pred C--CCCCCEEEEEEECCCHHHCEEEEECCCCCEECCCHHHHHHHHHHCCC T ss_conf 3--88670568998630755476432889653207799999999997699 No 3 >>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} (A:) Probab=100.00 E-value=0 Score=380.31 Aligned_cols=185 Identities=18% Similarity=0.283 Sum_probs=171.9 Q ss_pred CCCEEECCCCHHHHHHHHHCC----CCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--------C Q ss_conf 875474269989999999789----8859975898843242201344579989998887654333210137--------7 Q gi|254780813|r 2 IKNIILASSSLSRRKLLQNSG----IQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRY--------P 69 (199) Q Consensus 2 ~~~iILAS~S~~R~~lL~~~g----i~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~--------~ 69 (199) |++|||||+||||++||+++| ++|++++|+|||+.++. .+|.+++.++|..||+++..++ + T Consensus 9 ~~~iILaS~SprR~~lL~~~Gi~~~~~F~~~~~~idE~~~~~-------~~p~e~v~~lA~~Ka~~v~~~~~~~~~~~~~ 81 (207) T 2amh_A 9 IRTMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRA-------ADPFELTESIARAKMKAVLEKARQHSPPISG 81 (207) T ss_dssp CCEEEECCCCHHHHHHHHHHHTTTCSEEEECCCCCCGGGCCC-------SSHHHHHHHHHHHHHHHHHHHHHTC------ T ss_pred CCCEEEECCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 687899059999999999658777876598699989888777-------8979999999999898888777654224688 Q ss_pred CCCEECHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCCCEEEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 5403413443101234467610013469999985198037888665303-786100468741100122205789999962 Q gi|254780813|r 70 ESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQ-NGKVLRHHISVAQLTMYKLSEEFIKFYLNK 148 (199) Q Consensus 70 ~~~VI~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsg~~h~v~T~~~i~~-~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~ 148 (199) +.+||||||||+++|+|+|||.|+++|++||+.|||++|.||||+|++. +++.+|.++++|+|+|+++++++|++||++ T Consensus 82 ~~ivi~aDtvv~~~g~i~~KP~~~~eA~~~L~~lsG~~h~v~T~v~l~~~~~~~~~~~~~~t~v~f~~l~~~~I~~Yi~~ 161 (207) T 2amh_A 82 PAIALTFDQVVVKGDEVREKPLSTEQCRSFIASYSGGGVRTVATYALCVVGTENVLVAHNETETFFSKFGDDIVERTLER 161 (207) T ss_dssp CEEEEEEEEEEEETTEEECSCSSHHHHHHHHHHHTTSEEEEEEEEEEEETTCSCEEEEEEEEEEEECCCCHHHHHHHHHH T ss_pred CCEEEEECCHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCHHHHHHHHHC T ss_conf 74899823200213430369885278999999974995089999999968982799999768999725998999979854 Q ss_pred CCCCCCCCCCEECCCCCHH-HHHHEECCCCCCCCCCCHHHHHHHHHHC Q ss_conf 0688673321000012233-2100011897532227699999999978 Q gi|254780813|r 149 IGKKALLSVGSYQIDKEGI-QLFSSIKGSYFSIVGLPIIELINDLKIE 195 (199) Q Consensus 149 ~~~~~~~~aG~y~ie~~g~-~~i~~I~Gd~~~V~GLPi~~l~~~L~~~ 195 (199) ++|++|||||+|||.|+ .||++|+|||+||||||+.+|.++|+++ T Consensus 162 --~ep~~kAG~y~iq~~g~~~fi~~I~G~~~~ViGLPl~~l~~~L~~l 207 (207) T 2amh_A 162 --GACMNSAGGLVVEDEDMSRHVVRIVGTSYGVRGMEPAVVEKLLSQL 207 (207) T ss_dssp --CGGGGSGGGCCTTSHHHHTTEEEEESCHHHHHTCCHHHHHHHHHTC T ss_pred --CCCCCEEEEEEEECCCHHHCEEEEECCCCCEECCCHHHHHHHHHCC T ss_conf --9975140899997074110772428893110598899999999629 No 4 >>1vp2_A Putative xanthosine triphosphate pyrophosphatase/HAM1 protein homolog; TM0159; 1.78A {Thermotoga maritima} (A:) Probab=96.15 E-value=0.072 Score=32.23 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=70.7 Q ss_pred CCC--CEEECCCCHHHHHHHHH-CCCCCEEECCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEC Q ss_conf 987--54742699899999997-89885997589--88432422013445799899988876543332101377540341 Q gi|254780813|r 1 MIK--NIILASSSLSRRKLLQN-SGIQFSVVKPN--IDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIG 75 (199) Q Consensus 1 m~~--~iILAS~S~~R~~lL~~-~gi~f~~~~~~--iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~ 75 (199) ||+ +|++||+-+...+=++. +...+++++.. +|.... +.+ -...|..||+.+..... ..||+ T Consensus 12 ~m~km~i~~aT~N~~K~~E~~~iL~~~~~i~~~~~~~~~~E~--------~~t----~~enA~~KA~~~~~~~~-~pvi~ 78 (208) T 1vp2_A 12 HMKKLTVYLATTNPHKVEEIKMIAPEWMEILPSPEKIEVVED--------GET----FLENSVKKAVVYGKKLK-HPVMA 78 (208) T ss_dssp ---CEEEEESCCCHHHHHHHHTTCCTTEEEEECSSCCCCCCC--------CSS----HHHHHHHHHHHHHHHHC-SCEEE T ss_pred CCCCCEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCC--------CCC----HHHHHHHHHHHCCCCCC-CEEEE T ss_conf 635777999959889999999984059888304645777766--------835----88888765430013344-23787 Q ss_pred HHHHHCCC---CC--C----CCCC-CHHHHHHHHHHHHCCC--CEEEEEEEEECCC-CCCCEEEEEE Q ss_conf 34431012---34--4----6761-0013469999985198--0378886653037-8610046874 Q gi|254780813|r 76 CDQTMSLG---SS--I----YHKP-VDMLEAEKNLLRISGK--KHRISSAYVLVQN-GKVLRHHISV 129 (199) Q Consensus 76 aDtvv~~~---g~--i----~~KP-~~~~eA~~~L~~lsg~--~h~v~T~~~i~~~-~~~~~~~~~~ 129 (199) -||=+.++ |. + +-++ .+.+.....|+.+.|. +.++.|.++++.+ +..+..+..+ T Consensus 79 dDSGL~i~aL~g~PGiys~r~~~~~~~~~~~~~ll~~l~~~~r~A~~~~~i~~~~~~g~~~~~f~G~ 145 (208) T 1vp2_A 79 DDSGLVIYSLGGFPGVMSARFMEEHSYKEKMRTILKMLEGKDRRAAFVCSATFFDPVENTLISVEDR 145 (208) T ss_dssp EEEEEEEGGGTTEEGGGTTTTTTTSCHHHHHHHHHHHTTTSCCEEEEEEEEEEEETTTTEEEEEEEE T ss_pred ECCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCEEEEEEE T ss_conf 2435410224443678899998607841257889874236555422021245442024420468324 No 5 >>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine triphosphate pyrophosphohydrolase, inosine triphosphatase deficiency, ITP, IMP; 1.09A {Homo sapiens} (A:) Probab=96.14 E-value=0.016 Score=36.35 Aligned_cols=112 Identities=16% Similarity=0.120 Sum_probs=69.1 Q ss_pred CCCCEEECCCCHHH----HHHHHHCCCCC-EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEC Q ss_conf 98754742699899----99999789885-99758988432422013445799899988876543332101377540341 Q gi|254780813|r 1 MIKNIILASSSLSR----RKLLQNSGIQF-SVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIG 75 (199) Q Consensus 1 m~~~iILAS~S~~R----~~lL~~~gi~f-~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~ 75 (199) ||++|++||+.+.. +++|..+++.. .....+++|... ++ ...|..||+.++.... ..||+ T Consensus 8 ~~~~i~~aT~N~~K~~E~~~il~~~~~~~i~~~~~d~~E~~~----------t~----~enA~~KA~~~~~~~~-~pvia 72 (196) T 2car_A 8 VGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQG----------EP----DEISIQKCQEAVRQVQ-GPVLV 72 (196) T ss_dssp TTCEEEEECSCHHHHHHHHHHHCTTCCSEEEEECCCCCCBCS----------CH----HHHHHHHHHHHHHHHS-SCEEE T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEECHHCCCCCCCCC----------CH----HHHHHHHHHHHHHHHH-HHHEE T ss_conf 499799983998999999998315077010320179887688----------61----7888876677777665-55200 Q ss_pred HHHHHCCC---CC--CCCCCCH-HHHHHHHHHHHCC---CCEEEEEEEEECC--CCCCCEEEE Q ss_conf 34431012---34--4676100-1346999998519---8037888665303--786100468 Q gi|254780813|r 76 CDQTMSLG---SS--IYHKPVD-MLEAEKNLLRISG---KKHRISSAYVLVQ--NGKVLRHHI 127 (199) Q Consensus 76 aDtvv~~~---g~--i~~KP~~-~~eA~~~L~~lsg---~~h~v~T~~~i~~--~~~~~~~~~ 127 (199) -||=++++ |. ++.|.-. .......|..+++ ++.+..+.++++. +++.+..+. T Consensus 73 DDSGL~i~aL~g~PGvys~r~~~~~~~~~ll~~l~~~~~r~a~~~~~~~~~~~~~~~~~~~f~ 135 (196) T 2car_A 73 EDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFR 135 (196) T ss_dssp EEEEEEEGGGTTCEETTHHHHHHHHHHHHHHHTTTTCSCCEEEEEEEEEEECSCSSCCCEEEE T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEEE T ss_conf 002546767765567886999985103667777405654542268999986045688733899 No 6 >>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii OT3} (A:) Probab=95.74 E-value=0.062 Score=32.65 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=64.4 Q ss_pred CCEEECCCCHHHHH----HHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHH Q ss_conf 75474269989999----99978988599758988432422013445799899988876543332101377540341344 Q gi|254780813|r 3 KNIILASSSLSRRK----LLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQ 78 (199) Q Consensus 3 ~~iILAS~S~~R~~----lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDt 78 (199) .+|++||+-+...+ +|..+|++....+.++.|..- .+ -..+|..||+.+..... ..||+-|| T Consensus 1 Mki~~aT~N~~K~~E~~~~L~~~~i~v~~~~~~~~ee~~---------~t----~~enA~~KA~~~~~~~~-~pviadDs 66 (186) T 1v7r_A 1 MKIFFITSNPGKVREVANFLGTFGIEIVQLKHEYPEIQA---------EK----LEDVVDFGISWLKGKVP-EPFMIEDS 66 (186) T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEECCCCCCCCC---------SS----HHHHHHHHHHHHTTTSC-SSEEEEEE T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC---------CC----HHHHHHHHHHHHHHHCC-CEEEECCH T ss_conf 979998699899999999860659769865765765456---------31----77899999987653302-02661521 Q ss_pred HHCC---CCC--CCCCCCH-HHHHHHHHHHHCC---CCEEEEEEEEECCCCCC Q ss_conf 3101---234--4676100-1346999998519---80378886653037861 Q gi|254780813|r 79 TMSL---GSS--IYHKPVD-MLEAEKNLLRISG---KKHRISSAYVLVQNGKV 122 (199) Q Consensus 79 vv~~---~g~--i~~KP~~-~~eA~~~L~~lsg---~~h~v~T~~~i~~~~~~ 122 (199) -+.+ +|. ++.|.-. .......|..++| ++.++.+.+|++.+++. T Consensus 67 GL~i~aL~g~PGv~s~r~~~~~~~~~ll~~l~~~~~R~A~~~~~i~~~~~~~~ 119 (186) T 1v7r_A 67 GLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYIDGKA 119 (186) T ss_dssp EEEEGGGTTTBGGGHHHHHHHTHHHHHHHHTTTCSCCEEEEEEEEEEEETTEE T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCE T ss_conf 10234307855321366776567767888602504567888641012478724 No 7 >>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A {Methanococcus jannaschii} (A:) Probab=95.41 E-value=0.044 Score=33.58 Aligned_cols=108 Identities=19% Similarity=0.029 Sum_probs=66.6 Q ss_pred CCCCEEECCCCHHHHHHHHH----CCCC-CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEC Q ss_conf 98754742699899999997----8988-599758988432422013445799899988876543332101377540341 Q gi|254780813|r 1 MIKNIILASSSLSRRKLLQN----SGIQ-FSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIG 75 (199) Q Consensus 1 m~~~iILAS~S~~R~~lL~~----~gi~-f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~ 75 (199) ||++|++||+-+...+=++. +++. ......+++|.. .++ ..+|..||+.+..... ..||+ T Consensus 7 ~m~ki~~aT~N~~K~~E~~~il~~~~~~~i~~~~~d~~E~~----------~t~----~enA~~KA~~~~~~~~-~pvi~ 71 (193) T 1b78_A 7 EIMKIYFATGNPNKIKEANIILKDLKDVEIEQIKISYPEIQ----------GTL----EEVAEFGAKWVYNILK-KPVIV 71 (193) T ss_dssp ---CEEEECSCHHHHHHHHHHTTTCTTCCEEEECCCCCCBS----------SCH----HHHHHHHHHHHHHHHC-SCEEE T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCC----------CCH----HHHHHHHHHHHHHHCC-CEEEE T ss_conf 74079998898789999999875578742021376886446----------525----6777888998875213-32785 Q ss_pred HHHHHCC---CCC--CCCCCCHHH-HHHHHHHHHC---CCCEEEEEEEEECCCCCCC Q ss_conf 3443101---234--467610013-4699999851---9803788866530378610 Q gi|254780813|r 76 CDQTMSL---GSS--IYHKPVDML-EAEKNLLRIS---GKKHRISSAYVLVQNGKVL 123 (199) Q Consensus 76 aDtvv~~---~g~--i~~KP~~~~-eA~~~L~~ls---g~~h~v~T~~~i~~~~~~~ 123 (199) -||=+.+ +|. ++.|.-... .....|..++ +++..+.+.+|++.+++.. T Consensus 72 dDsGL~i~aL~g~PG~ys~~~~~~~~~~~ll~~l~~~~~R~A~~~~~i~~~~~~~~~ 128 (193) T 1b78_A 72 EDSGFFVEALNGFPGTYSKFVQETIGNEGILKLLEGKDNRNAYFKTVIGYCDENGVR 128 (193) T ss_dssp EEEEEEEGGGTTCEETTHHHHHHHTHHHHHHHHHTTCSCCEEEEEEEEEEEETTEEE T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE T ss_conf 061114667754445661998875785999998641012556750232320158506 No 8 >>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered Se-Met, structural genomics, putative ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia coli} (A:) Probab=93.96 E-value=0.51 Score=26.94 Aligned_cols=107 Identities=16% Similarity=0.211 Sum_probs=64.3 Q ss_pred CCEEECCCCHHHHHHHHH-C-CCCCEEEC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHH Q ss_conf 754742699899999997-8-98859975-89884324220134457998999888765433321013775403413443 Q gi|254780813|r 3 KNIILASSSLSRRKLLQN-S-GIQFSVVK-PNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQT 79 (199) Q Consensus 3 ~~iILAS~S~~R~~lL~~-~-gi~f~~~~-~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtv 79 (199) ++|++||+-+...+=++. + .+++++++ .+++....+. .+.++ ..+|..||+.+..... ..||+-||= T Consensus 24 mki~~aT~N~~K~~E~~~iL~~~~iei~~l~~~~~~~~ee-----~g~t~----~enA~~KA~~~~~~~~-~pviaDDSG 93 (221) T 1k7k_A 24 QKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEE-----TGLTF----IENAILKARHAAKVTA-LPAIADDSG 93 (221) T ss_dssp EEEEESCCCHHHHHHHHHHHGGGTEEEEETTTTTCCCCCC-----CCSSH----HHHHHHHHHHHHHHHS-SCEEEEEEE T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCC-----CCCCH----HHHHHHHHHHHHHHCC-CCEEEECCE T ss_conf 8899993987899999997323498798612149887776-----77106----8888995999986058-875970657 Q ss_pred HCCC---CC--CCCCC------CHHHHHHHHHHHHCC-----CCEEEEEEEEECCC Q ss_conf 1012---34--46761------001346999998519-----80378886653037 Q gi|254780813|r 80 MSLG---SS--IYHKP------VDMLEAEKNLLRISG-----KKHRISSAYVLVQN 119 (199) Q Consensus 80 v~~~---g~--i~~KP------~~~~eA~~~L~~lsg-----~~h~v~T~~~i~~~ 119 (199) ++++ |. ++.|. .+.+.-.+.|..+.+ ++.++.|.+|++.+ T Consensus 94 L~i~aL~g~PGvys~r~~~~~~~~~~~~~~Ll~~l~~~~~~~R~A~f~~~i~~~~p 149 (221) T 1k7k_A 94 LAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETXKDVPDDQRQARFHCVLVYLRH 149 (221) T ss_dssp EEEGGGTTCBGGGSTTTTCTTCCHHHHHHHHHHHTTTSCGGGCEEEEEEEEEEESS T ss_pred EEEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECC T ss_conf 99944069970142998644686899999999986478823124769999998626 No 9 >>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} (A:104-193) Probab=66.95 E-value=6.6 Score=20.06 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=22.8 Q ss_pred CCEEECCCCHHHHHHHHHCCCCCEEECC Q ss_conf 7547426998999999978988599758 Q gi|254780813|r 3 KNIILASSSLSRRKLLQNSGIQFSVVKP 30 (199) Q Consensus 3 ~~iILAS~S~~R~~lL~~~gi~f~~~~~ 30 (199) +..+.|++|+||+..|....-++++.+- T Consensus 18 ~ga~IGTSS~RR~aql~~~~Pdl~~~~i 45 (90) T 1gtk_A 18 AGSIVGTSSLRRQCQLAERRPDLIIRSL 45 (90) T ss_dssp TTCEEECCCHHHHHHHHHHCTTSEEECC T ss_pred CCCEEEECCHHHHHHHHHHCCCCEEEEE T ss_conf 9996544878999999985899749997 No 10 >>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* (A:121-216) Probab=64.34 E-value=7.8 Score=19.62 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=22.3 Q ss_pred CEEECCCCHHHHHHHHHCCCCCEEECCC Q ss_conf 5474269989999999789885997589 Q gi|254780813|r 4 NIILASSSLSRRKLLQNSGIQFSVVKPN 31 (199) Q Consensus 4 ~iILAS~S~~R~~lL~~~gi~f~~~~~~ 31 (199) .-+.|++|+||+..|....-++++.+-. T Consensus 23 ga~IGTSS~RR~aql~~~~Pdl~~~~iR 50 (96) T 3ecr_A 23 KSVVGTSSLRRAAQLQRKFPHLEFRSIR 50 (96) T ss_dssp TCEEECCCHHHHHHHHHHCTTSEEECCC T ss_pred HHEECCCCCCHHHHHHHHCCCCCHHHHH T ss_conf 3221456642589999867854402555 No 11 >>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein- like 3; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} (A:) Probab=51.74 E-value=17 Score=17.49 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=34.4 Q ss_pred CCCEEECCCC--HHH---------HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC- Q ss_conf 8754742699--899---------9999978988599758988432422013445799899988876543332101377- Q gi|254780813|r 2 IKNIILASSS--LSR---------RKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYP- 69 (199) Q Consensus 2 ~~~iILAS~S--~~R---------~~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~- 69 (199) |.+|++-|+| |.| +++|+..+++|+.+--+-|+.. .+....++......+...+- T Consensus 1 m~~V~iy~~~~cp~~~~~~~c~~~k~~L~~~~v~~~~idi~~~~~~-------------~~~~~~~~~~g~~tvP~ifi~ 67 (93) T 1t1v_A 1 MSGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNAL-------------RDEMRTLAGNPKATPPQIVNG 67 (93) T ss_dssp CCCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHH-------------HHHHHHHTTCTTCCSCEEEET T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH-------------HHHHHHHCCCCCCEEEEEEEC T ss_conf 9988999877866415899999999999987996399994587202-------------336666416898358899999 Q ss_pred CCCEECHHHHHCC Q ss_conf 5403413443101 Q gi|254780813|r 70 ESFVIGCDQTMSL 82 (199) Q Consensus 70 ~~~VI~aDtvv~~ 82 (199) +..|-|+|.+... T Consensus 68 g~~iGg~d~l~~l 80 (93) T 1t1v_A 68 NHYCGDYELFVEA 80 (93) T ss_dssp TEEEEEHHHHHHH T ss_pred CEEEECHHHHHHH T ss_conf 9998459999999 No 12 >>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} (A:93-172) Probab=28.80 E-value=33 Score=15.75 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=22.7 Q ss_pred EECCCCHHHHHHHHHCCCCCEEECCCCCCC Q ss_conf 742699899999997898859975898843 Q gi|254780813|r 6 ILASSSLSRRKLLQNSGIQFSVVKPNIDER 35 (199) Q Consensus 6 ILAS~S~~R~~lL~~~gi~f~~~~~~iDE~ 35 (199) +=.+.|+.|+++|+.+|-+....+.+.||. T Consensus 31 ~p~~~~~~k~~~l~~~GA~V~~~~~~~~~~ 60 (80) T 1p5j_A 31 VPGTTPALTIERLKNEGATCKVVGELLDEA 60 (80) T ss_dssp ECTTCCHHHHHHHHHTTCEEEECCSCHHHH T ss_pred CCCCCCHHHEECCCCCCEEEEEECCCCCHH T ss_conf 268884453112345742899831221046 No 13 >>1v7c_A Threonine synthase; PLP-dependent enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: HEY; 2.00A {Thermus thermophilus} (A:58-166) Probab=26.54 E-value=40 Score=15.21 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=19.6 Q ss_pred CCHHHHHHHHHCCCCCEEECCCCCCC Q ss_conf 99899999997898859975898843 Q gi|254780813|r 10 SSLSRRKLLQNSGIQFSVVKPNIDER 35 (199) Q Consensus 10 ~S~~R~~lL~~~gi~f~~~~~~iDE~ 35 (199) .|+.|+++++.+|-+....+.++||. T Consensus 55 ~~~~k~~~~~~~Ga~v~~~~~~~~~~ 80 (109) T 1v7c_A 55 VALGKVAQSLVHGARIVQVEGNFDDA 80 (109) T ss_dssp SCHHHHHHHHHTTCEEEEEESCHHHH T ss_pred HHHHHHHHHHCCCCCEEECCCCCCCH T ss_conf 35554333312796057416754201 No 14 >>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} (A:69-151) Probab=23.91 E-value=52 Score=14.49 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=21.1 Q ss_pred CCCCHHHHHHHHHCCCCCEEECCCCCCC Q ss_conf 2699899999997898859975898843 Q gi|254780813|r 8 ASSSLSRRKLLQNSGIQFSVVKPNIDER 35 (199) Q Consensus 8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~ 35 (199) ...++.|+++|+.+|-+....+.+++|. T Consensus 38 ~~~~~~k~~~l~~~GA~Vi~~~~~~~~~ 65 (83) T 1v71_A 38 LDAPEAKVAATKGYGGQVIMYDRYKDDR 65 (83) T ss_dssp TTCCHHHHHHHHHTTCEEEEECTTTTCH T ss_pred CCCCHHHHHHHHHHCCCEEEECCCCCHH T ss_conf 5321899999998289379966872067 No 15 >>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} (A:) Probab=23.61 E-value=41 Score=15.17 Aligned_cols=20 Identities=5% Similarity=0.027 Sum_probs=14.8 Q ss_pred CCCCCCCHHHHHHHHHHCCC Q ss_conf 53222769999999997898 Q gi|254780813|r 178 FSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 178 ~~V~GLPi~~l~~~L~~~gi 197 (199) -..+|.|+..|++.|+..|| T Consensus 9 A~ev~~~vdrLleQl~~AGi 28 (49) T 1nd9_A 9 AAERQTSVERLVQQFADAGI 28 (49) T ss_dssp HHHHSSSHHHHHHHHHHHTS T ss_pred HHHHCCCHHHHHHHHHHCCC T ss_conf 99989599999999999289 No 16 >>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* (A:73-154) Probab=23.56 E-value=53 Score=14.45 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=18.6 Q ss_pred ECCCCHHHHHHHHHCCCCCEEECCCCCC Q ss_conf 4269989999999789885997589884 Q gi|254780813|r 7 LASSSLSRRKLLQNSGIQFSVVKPNIDE 34 (199) Q Consensus 7 LAS~S~~R~~lL~~~gi~f~~~~~~iDE 34 (199) =.+.|+.|+++|+.+|-.....+.++|| T Consensus 35 p~~~~~~k~~~l~~~GA~Vi~~~~~~~~ 62 (82) T 3l6b_A 35 PQTAPDCKKLAIQAYGASIVYCEPSDES 62 (82) T ss_dssp ETTSCHHHHHHHHHTTCEEEEECSSHHH T ss_pred CHHHHHHHHHHHHCCCCCEEECCCCHHH T ss_conf 6056789988875168743870550456 No 17 >>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive protein, jasmonic acid pathway; HET: LLP 15P; 2.35A {Solanum lycopersicum} (A:88-185) Probab=23.26 E-value=39 Score=15.32 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=18.7 Q ss_pred CCCCHHHHHHHHHCCCCCEEECCCCCCC Q ss_conf 2699899999997898859975898843 Q gi|254780813|r 8 ASSSLSRRKLLQNSGIQFSVVKPNIDER 35 (199) Q Consensus 8 AS~S~~R~~lL~~~gi~f~~~~~~iDE~ 35 (199) ...|+.|++.|+.+|-+....+++.+|. T Consensus 53 ~~~~~~k~~~l~~~GA~Vi~~~~~~~~~ 80 (98) T 3iau_A 53 TTTPQIKIDAVRALGGDVVLYGKTFDEA 80 (98) T ss_dssp TTCCHHHHHHHHHTTCEEEECCSSHHHH T ss_pred CCCCHHHHHHHHHHCCCEEECCCCHHHH T ss_conf 8887999999997177612214554779 No 18 >>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A* (A:98-209) Probab=21.42 E-value=59 Score=14.19 Aligned_cols=75 Identities=12% Similarity=0.083 Sum_probs=38.2 Q ss_pred EEECCCCHHHH----HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHH Q ss_conf 47426998999----99997898859975898843242201344579989998887654333210137754034134431 Q gi|254780813|r 5 IILASSSLSRR----KLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTM 80 (199) Q Consensus 5 iILAS~S~~R~----~lL~~~gi~f~~~~~~iDE~~~~~~~~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~VI~aDtvv 80 (199) .+||+..-.+. +.+.+.|+.+.+.+....+.....+ . +..-...+..+-+........+..+.+|+||=-+- T Consensus 18 gvlaT~~Ti~s~~y~~~l~~~g~~~~v~~~~~~~lv~~~~--~--~~~~~~~~~~~l~~~l~~l~~~~~d~iILgCTe~P 93 (112) T 3ist_A 18 GVLGTLGTVESXAYPTALKGLNRRVEVDSLACPKFVSVVE--S--GEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYP 93 (112) T ss_dssp EEEECHHHHHHTHHHHHHHHHCTTCEEEEEECHHHHHHHH--T--TCTTSHHHHHHHHHHHGGGGGSCCCEEEECSTTGG T ss_pred EEEECHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH--C--CCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHH T ss_conf 9995103442367788876216753899833637889987--3--56585999999999876530345776997774458 Q ss_pred CCC Q ss_conf 012 Q gi|254780813|r 81 SLG 83 (199) Q Consensus 81 ~~~ 83 (199) ... T Consensus 94 li~ 96 (112) T 3ist_A 94 LLK 96 (112) T ss_dssp GGH T ss_pred HHH T ss_conf 888 No 19 >>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cancer cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} (A:54-132) Probab=20.58 E-value=47 Score=14.77 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=17.1 Q ss_pred CCCCHHHHHHHHHCCCCCEEECCCCCC Q ss_conf 269989999999789885997589884 Q gi|254780813|r 8 ASSSLSRRKLLQNSGIQFSVVKPNIDE 34 (199) Q Consensus 8 AS~S~~R~~lL~~~gi~f~~~~~~iDE 34 (199) .+.|+.|.++++.+|-+....+.+.|| T Consensus 33 ~~~~~~k~~~~~~~Ga~Vi~~~~~~~~ 59 (79) T 2rkb_A 33 ESTSLQVVQRLQGEGAEVQLTGKVWDE 59 (79) T ss_dssp TTCCHHHHHHHHHTTCEEEECCSSHHH T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 210226777652048642235753110 No 20 >3cin_A Myo-Inositol-1-Phosphate Synthase- Related Protein (Tm1419) {Thermotoga Maritima} (A:) Probab=20.39 E-value=62 Score=14.05 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=41.9 Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCCCC-------HHHHHHEECCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 4110012220578999996206886733210000122-------33210001189753222769999999997898 Q gi|254780813|r 129 VAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKE-------GIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197 (199) Q Consensus 129 ~t~v~f~~l~~~~I~~Yi~~~~~~~~~~aG~y~ie~~-------g~~~i~~I~Gd~~~V~GLPi~~l~~~L~~~gi 197 (199) .|+-....-+.+++..+++++..+.....--|++-.. |..| |+|.++++...| .+.++.++.|+ T Consensus 144 sTE~~~p~~~~~~~~~a~~~~~~e~i~aS~~YA~Aal~eaa~~aG~~f---vN~tPs~~~~~P--~l~ela~~~gv 214 (394) T 3cin_A 144 TTEAFVPFGNKEDLLKAIENNDKERLTATQVYAYAAALYANKRGGAAF---VNVIPTFIANDP--AFVELAKENNL 214 (394) T ss_dssp CCCCCCCCSSHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHTCEEE---EECSSSCSTTCH--HHHHHHHHTTE T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCE---ECCCCCCCCCCH--HHHHHHHHCCC T ss_conf 887789998889999997326765677215999999999986278835---326776666758--99999996798 No 21 >>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} (A:167-241) Probab=20.14 E-value=62 Score=14.02 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=24.7 Q ss_pred CCCCEEECCCC--H---HHHHHHHHCCCCCEEECCCCCCC Q ss_conf 98754742699--8---99999997898859975898843 Q gi|254780813|r 1 MIKNIILASSS--L---SRRKLLQNSGIQFSVVKPNIDER 35 (199) Q Consensus 1 m~~~iILAS~S--~---~R~~lL~~~gi~f~~~~~~iDE~ 35 (199) |+++|+|-|.+ | +=+.+|+..|++|+.+.-+-|+. T Consensus 2 ~~~~v~ly~~~~C~~c~~~~~~L~~~gi~~~~~~i~~~~~ 41 (75) T 1nm3_A 2 VQESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDAT 41 (75) T ss_dssp CCCCEEEEECSSCHHHHHHHHHHHHHTCCCEEEETTTTCC T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCHH T ss_conf 6866999854889759999999997499849999998889 Done!