RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus
Liberibacter asiaticus str. psy62]
(199 letters)
>gnl|CDD|30773 COG0424, Maf, Nucleotide-binding protein implicated in inhibition
of septum formation [Cell division and chromosome
partitioning].
Length = 193
Score = 163 bits (415), Expect = 2e-41
Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 10/200 (5%)
Query: 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK 60
M+ +ILASSS RR+LL+ GI F V+ +IDE + + P + L LAE+K
Sbjct: 1 MMPRLILASSSPRRRELLEQLGIPFEVIPSDIDE-------PLLKAEEPREYVLRLAEEK 53
Query: 61 ALEVSNRYP-ESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQN 119
A V+ R P ++ VIG D + L I KP D EA + L ++SG+ H++ + L+
Sbjct: 54 ARAVAARLPPDALVIGADTVVVLDGRILGKPKDEEEAREMLRKLSGRTHQVYTGVALIDP 113
Query: 120 GKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFS 179
GK ++ + V ++ LS+E I+ Y+ L G+Y I G I+G Y +
Sbjct: 114 GKRVQSEVEVTKVRFRTLSDEEIEAYVASGE--PLDKAGAYGIQGLGGLFIEKIEGDYSN 171
Query: 180 IVGLPIIELINDLKIEKVID 199
+VGLP+ EL+ L+
Sbjct: 172 VVGLPLPELVQLLRELGFSV 191
>gnl|CDD|29954 cd00555, Maf, Nucleotide binding protein Maf. Maf has been
implicated in inhibition of septum formation in
eukaryotes, bacteria and archaea, but homologs in
B.subtilis and S.cerevisiae are nonessential for cell
division. Maf has been predicted to be a nucleotide- or
nucleic acid-binding protein with structural similarity
to the hypoxanthine/xanthine NTP pyrophosphatase Ham1
from Methanococcus jannaschii, RNase H from Escherichia
coli, and some other nucleotide or RNA-binding
proteins..
Length = 180
Score = 162 bits (413), Expect = 4e-41
Identities = 68/189 (35%), Positives = 100/189 (52%), Gaps = 10/189 (5%)
Query: 5 IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEV 64
+ILAS+S RR+LL+ GI F VV +IDE ++ + PE L LAE KA V
Sbjct: 1 LILASASPRRRELLEQLGIPFEVVPSDIDETPIKGES-------PEDYVLRLAEAKAEAV 53
Query: 65 SNRYP-ESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVL 123
+ R P ++ VIG D + L I KP D EA + L R+SG+ H + + L+ G L
Sbjct: 54 AARLPPDALVIGADTVVVLDGRILGKPKDREEAREMLKRLSGRTHEVYTGVALIDPGGKL 113
Query: 124 RHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVGL 183
+ ++ +LS+E I+ Y+ + L G+Y I G L I+G Y ++VGL
Sbjct: 114 VTDVESTKVRFRELSDEEIEAYVAS--GEPLDKAGAYGIQGLGGALIERIEGDYSNVVGL 171
Query: 184 PIIELINDL 192
P+ EL+ L
Sbjct: 172 PLPELLKLL 180
>gnl|CDD|111445 pfam02545, Maf, Maf-like protein. Maf is a putative inhibitor of
septum formation in eukaryotes, bacteria, and archaea.
Length = 193
Score = 106 bits (267), Expect = 4e-24
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 11/191 (5%)
Query: 5 IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE- 63
+ILAS+S R++LL++ GI F V+ DE + +D P + + LA +KAL
Sbjct: 3 LILASTSPRRKELLEDLGIPFEVIVSYFDEESVLYSLD------PREYVVDLACEKALAK 56
Query: 64 VSNRYP-ESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKV 122
V+ P + +IG D + LG I KP D EA + L ++SG H + + L+ K
Sbjct: 57 VAQLAPDNALIIGADTVVILGGRILGKPKDKEEAREMLRKLSGNVHSVYTGLALISPEKN 116
Query: 123 LRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVG 182
L V ++ LS+E I+ Y+ + L G+Y I G I+G Y+++VG
Sbjct: 117 LLFL-EVTKVKFRDLSDEEIEAYVES--GEPLDKAGAYGIQGFGGLFIKKIEGDYYNVVG 173
Query: 183 LPIIELINDLK 193
LP+ +L + L+
Sbjct: 174 LPLPKLRSLLR 184
>gnl|CDD|73242 cd00985, Maf_Ham1, Maf_Ham1. Maf, a nucleotide binding protein, has
been implicated in inhibition of septum formation in
eukaryotes, bacteria and archaea. A Ham1-related protein
from Methanococcus jannaschii is a novel NTPase that has
been shown to hydrolyze nonstandard nucleotides, such as
hypoxanthine/xanthine NTP, but not standard
nucleotides..
Length = 131
Score = 89.1 bits (221), Expect = 7e-19
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 5 IILASSSLSRRKLLQNSG-IQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE 63
+ILAS S R + L+ G I+F V+ +IDE + PE LA KA
Sbjct: 1 LILASGSPRRLEELKQIGGIEFEVLPSDIDET--------GLKGEPEDTVEELALLKARA 52
Query: 64 VSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVL 123
V+ R P++ VI D + + KP EA + L +SG+ +A LV +
Sbjct: 53 VAERLPDAPVIADDTGLVVDGRPGGKPARFAEALEMLRGLSGRTAEFVTAVALVDPDGKI 112
Query: 124 RHHISVAQLTM 134
+ +
Sbjct: 113 ITFEGETEGKI 123
>gnl|CDD|36722 KOG1509, KOG1509, KOG1509, Predicted nucleic acid-binding protein
ASMTL [Cell cycle control, cell division, chromosome
partitioning].
Length = 209
Score = 75.4 bits (185), Expect = 9e-15
Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 21/195 (10%)
Query: 3 KNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKAL 62
K IILAS+S R+++L G+ VV +E + S + PE + A++KA
Sbjct: 10 KRIILASASPRRKQILAEMGLNLEVVVSTFEE-----NLIKSSFETPEDYVVETAKQKAE 64
Query: 63 EVSNRYPE------SFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSA--- 113
E+ R + VI D + G IY KPVD +A++ L R+SG+ H + +
Sbjct: 65 EIIERLGDGEDSFPDVVISADTITTDGGEIYEKPVDKKDAKRMLKRLSGRPHSVFTGVAL 124
Query: 114 -YVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNK--IGKKALLSVGSYQIDKEGIQLF 170
+ Q G + ++ ++ EE I+ Y++ KKA G Y I G L
Sbjct: 125 IHCSSQLGTRVSEFYDETKVYFGEIPEEVIEEYVDSGEPLKKA----GGYGIQGLGAPLI 180
Query: 171 SSIKGSYFSIVGLPI 185
S+ G + ++VGLP+
Sbjct: 181 ESVVGDFDNVVGLPL 195
>gnl|CDD|38432 KOG3222, KOG3222, KOG3222, Inosine triphosphate pyrophosphatase
[Nucleotide transport and metabolism].
Length = 195
Score = 29.9 bits (67), Expect = 0.45
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 86 IYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFY 145
+ + +D+ E + + I+ +K ++++ V G VL S+ + L +IK++
Sbjct: 33 LINIDLDLPEIQGSPEEIAIEKCKVAAEIV---KGPVLVEDTSLCFNALGGLPGPYIKWF 89
Query: 146 LNKIGKKALLSV 157
L K+G + L +
Sbjct: 90 LKKLGPEGLHEM 101
>gnl|CDD|34720 COG5118, BDP1, Transcription initiation factor TFIIIB, Bdp1 subunit
[Transcription].
Length = 507
Score = 28.2 bits (62), Expect = 1.6
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 16 KLLQNSGIQFSVVK---PNIDEREMEKKMDFSERKRPEKIALILAEKK 60
K L G FS++ PN + ++++ K E+ PE+I L EKK
Sbjct: 378 KALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKK 425
>gnl|CDD|38860 KOG3655, KOG3655, KOG3655, Drebrins and related actin binding
proteins [Cytoskeleton].
Length = 484
Score = 26.5 bits (58), Expect = 5.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 33 DEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPE 70
+E EKK ERK+ E+ E++ E RY E
Sbjct: 190 LRQEEEKKKAEDERKQFEQERREREEEEHKERERRYQE 227
>gnl|CDD|119350 cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD).
ChiD, a chitinase found in Bacillus circulans,
hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine
in chitin and chitodextrins. The domain architecture of
ChiD includes a catalytic glycosyl hydrolase family 18
(GH18) domain, a chitin-binding domain, and a
fibronectin type III domain. The chitin-binding and
fibronectin type III domains are located either
N-terminal or C-terminal to the catalytic domain. This
family includes exochitinase Chi36 from Bacillus
cereus..
Length = 312
Score = 26.1 bits (58), Expect = 6.7
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 139 EEFIKF--YLNKIGKKALLSVG 158
EF L GKK L+S+G
Sbjct: 60 AEFKADIKALQAKGKKVLISIG 81
>gnl|CDD|34758 COG5157, CDC73, RNA polymerase II assessory factor [Transcription].
Length = 362
Score = 25.5 bits (55), Expect = 8.9
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 158 GSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197
G Y G +LF++IKG YF+ G + + +E++
Sbjct: 293 GRYNWRDPG-ELFNTIKGFYFARRGDQSNLYMRNWNVEEI 331
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology..
Length = 382
Score = 25.7 bits (57), Expect = 9.1
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 160 YQIDK----EGIQLFSSIKGSYFSIVGLPIIELIND 191
Q++K +G Q+ S+ G S +G ++EL++D
Sbjct: 81 KQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSD 116
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.135 0.361
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,232,679
Number of extensions: 111794
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 18
Length of query: 199
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,340,536
Effective search space: 477458960
Effective search space used: 477458960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)