RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62] (199 letters) >1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A* Length = 189 Score = 168 bits (428), Expect = 6e-43 Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 10/193 (5%) Query: 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK 60 M K +ILAS S R++LL + +S++ ++E + PE+ LA++K Sbjct: 1 MTKPLILASQSPRRKELLDLLQLPYSIIVSEVEE-------KLNRNFSPEENVQWLAKQK 53 Query: 61 ALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG 120 A V++ +P + VIG D + L KP D EA L R+SG+ H + +A + Sbjct: 54 AKAVADLHPHAIVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAEN 113 Query: 121 KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSI 180 + ++ + LSEE I Y+ K+ + G+Y I G I G Y+S+ Sbjct: 114 HSETFY-DKTEVAFWSLSEEEIWTYIET--KEPMDKAGAYGIQGRGALFVKKIDGDYYSV 170 Query: 181 VGLPIIELINDLK 193 +GLPI + + L+ Sbjct: 171 MGLPISKTMRALR 183 >2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 2.00A {Homo sapiens} Length = 230 Score = 129 bits (324), Expect = 5e-31 Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 20/206 (9%) Query: 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK 60 + K ++LAS+S R+++L N+G++F VV E+ D + P A+ A++K Sbjct: 2 LHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKL-----DKASFATPYGYAMETAKQK 56 Query: 61 ALEVSNRY------PESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAY 114 ALEV+NR VIG D +++G I KPVD +A + L R+SG++H + + Sbjct: 57 ALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGV 116 Query: 115 VLVQNGK-------VLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGI 167 +V + ++ +LSEE + Y++ + + G Y I G Sbjct: 117 AIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSG--EPMDKAGGYGIQALGG 174 Query: 168 QLFSSIKGSYFSIVGLPIIELINDLK 193 L S+ G + ++VG P+ L Sbjct: 175 MLVESVHGDFLNVVGFPLNHFCKQLV 200 >2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2 Length = 207 Score = 114 bits (286), Expect = 1e-26 Identities = 34/200 (17%), Positives = 69/200 (34%), Gaps = 9/200 (4%) Query: 1 MIKNIILASSSLSRRKLLQNSG----IQFSVVKPNIDEREMEKKMDFS-ERKRPEKIALI 55 I+ +I+ +SS R +L+ F ++ P+IDE+ F Sbjct: 8 EIRTMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADPFELTESIARAKMKA 67 Query: 56 LAEKKALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYV 115 + EK + + DQ + G + KP+ + + SG R + Y Sbjct: 68 VLEKARQHSPPISGPAIALTFDQVVVKGDEVREKPLSTEQCRSFIASYSGGGVRTVATYA 127 Query: 116 LVQNGKVLRH-HISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLF-SSI 173 L G + + K ++ ++ L + + S G ++ E + I Sbjct: 128 LCVVGTENVLVAHNETETFFSKFGDDIVERTLER--GACMNSAGGLVVEDEDMSRHVVRI 185 Query: 174 KGSYFSIVGLPIIELINDLK 193 G+ + + G+ + L Sbjct: 186 VGTSYGVRGMEPAVVEKLLS 205 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 40.3 bits (94), Expect = 3e-04 Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 66/152 (43%) Query: 4 NIILASS---SLSRRKLLQNSGIQFSVVKP-------NIDEREMEK-------KMDFSER 46 N L + +S L N V P N+ R+ + ++ FSER Sbjct: 357 NSHLPAGKQVEIS----LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412 Query: 47 KRPEKIALILAEKKALEVSNRY-PESFVIGCDQTMSLGSSIYHKP-----VDMLE---AE 97 K L+ SNR+ P + +S +H D++ + Sbjct: 413 K--------------LKFSNRFLP----V---------ASPFHSHLLVPASDLINKDLVK 445 Query: 98 KNLLRISGKKHRISSAYVLV---QNGKVLRHH 126 N + + K +I V +G LR Sbjct: 446 NN-VSFNAKDIQIP-----VYDTFDGSDLRVL 471 Score = 36.5 bits (84), Expect = 0.004 Identities = 38/195 (19%), Positives = 80/195 (41%), Gaps = 56/195 (28%) Query: 34 EREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTM---SLG-----SS 85 E+ + F++ P AL L EK A E +I D T SLG +S Sbjct: 1722 EKGLLSATQFTQ---P---ALTLMEKAAFE---DLKSKGLIPADATFAGHSLGEYAALAS 1772 Query: 86 IYHKPVDMLEAEKNLLRI---SGKKHRIS--------SAY--VLVQNGKVLRHHISVAQL 132 + D++ E +L+ + G +++ S Y + + G+V Sbjct: 1773 L----ADVMSIE-SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV---------- 1817 Query: 133 TMYKLSEEFIKFYLNKIGKKA--LLSVGSYQIDKE------GIQLFSSIKG--SYFSIVG 182 S+E +++ + ++GK+ L+ + +Y ++ + ++ ++ ++ + Sbjct: 1818 -AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876 Query: 183 LPIIELINDLKIEKV 197 + IIEL L +E+V Sbjct: 1877 IDIIELQKSLSLEEV 1891 Score = 30.3 bits (68), Expect = 0.26 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 55/140 (39%) Query: 94 LEAEKNLLR-------ISGKK--HRISSA-YVLVQNGKV------------------LRH 125 L K L++ ++ + + +SA + V G LR Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175 Query: 126 HISVAQL-TMYK-LSEEFIKFYLNKIGKKAL--LSVGSYQIDK---EGIQLFSSIKG--- 175 L Y L + IKF + L L + +K +G+ + ++ Sbjct: 176 ------LYQTYHVLVGDLIKF----SAET-LSELIRTTLDAEKVFTQGLNILEWLENPSN 224 Query: 176 ----SYF-SI-VGLPIIELI 189 Y SI + P+I +I Sbjct: 225 TPDKDYLLSIPISCPLIGVI 244 >3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165 Score = 28.8 bits (64), Expect = 0.87 Identities = 5/30 (16%), Positives = 11/30 (36%) Query: 94 LEAEKNLLRISGKKHRISSAYVLVQNGKVL 123 L E + + + R ++ +G L Sbjct: 13 LGTENLYFQSNAMRQRTIVCPLIQNDGCYL 42 >2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A* Length = 193 Score = 27.4 bits (60), Expect = 2.4 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 10/101 (9%) Query: 36 EMEKKMDFSERKRPEKIA-LILAEKKALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDML 94 MEK E +R E+ L AE+KA++ + +G +I + Sbjct: 3 HMEKVPGEMEIERRERSEELSEAERKAVQ------AMWARLYANCEDVGVAILVR---FF 53 Query: 95 EAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMY 135 + + + + + ++ ++ +H V Sbjct: 54 VNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNT 94 >2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Length = 373 Score = 27.2 bits (59), Expect = 2.7 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 25/90 (27%) Query: 31 NIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGC-----DQTMSLGSS 85 +++E M K+AL LA++ + + +G Q + +G Sbjct: 12 SMEEYYM-------------KLALDLAKQGEGQTESNPL----VGAVVVKDGQIVGMG-- 52 Query: 86 IYHKPVDMLEAEKNLLRISGKKHRISSAYV 115 H AE + + ++G + YV Sbjct: 53 -AHLKYGEAHAEVHAIHMAGAHAEGADIYV 81 >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 701 Score = 26.5 bits (58), Expect = 4.5 Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 7/104 (6%) Query: 31 NIDEREMEKKMDFSER----KRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSI 86 + E+ K + E K + + LE+SN + L Sbjct: 131 SQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNA---LEISSEMGLKILEDVF 187 Query: 87 YHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVA 130 + K LR + L+ + S+ Sbjct: 188 PEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSID 231 >1s99_A YKOF; thiamin-binding protein, ACT-domain family, ligand binding protein; 1.65A {Bacillus subtilis} SCOP: d.58.48.2 PDB: 1sbr_A* 1s7h_A Length = 200 Score = 26.3 bits (58), Expect = 5.4 Identities = 9/52 (17%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Query: 126 HISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSY 177 I+ + ++Y ++++FI + K AL + + ++ + + + ++GS Sbjct: 9 RIAGFRFSLYPMTDDFI-----SVIKSALAATDTSKVWTKTDHISTVLRGSI 55 >1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Length = 174 Score = 25.8 bits (56), Expect = 7.0 Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 13/77 (16%) Query: 67 RYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHH 126 R V+G D +SLG+++ K R+ + VL Sbjct: 7 RRNGQVVVGGDGQVSLGNTVMKGNAR-------------KVRRLYNGKVLAGFAGGTADA 53 Query: 127 ISVAQLTMYKLSEEFIK 143 ++ +L KL Sbjct: 54 FTLFELFERKLEMHQGH 70 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.135 0.361 Gapped Lambda K H 0.267 0.0581 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,636,537 Number of extensions: 73719 Number of successful extensions: 238 Number of sequences better than 10.0: 1 Number of HSP's gapped: 227 Number of HSP's successfully gapped: 15 Length of query: 199 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 111 Effective length of database: 3,559,758 Effective search space: 395133138 Effective search space used: 395133138 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (24.9 bits)