RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus
Liberibacter asiaticus str. psy62]
         (199 letters)



>1ex2_A Protein MAF; structural genomics, PSI, protein structure
           initiative, midwest center for structural genomics,
           MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP:
           c.51.4.2 PDB: 1exc_A*
          Length = 189

 Score =  168 bits (428), Expect = 6e-43
 Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 10/193 (5%)

Query: 1   MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK 60
           M K +ILAS S  R++LL    + +S++   ++E         +    PE+    LA++K
Sbjct: 1   MTKPLILASQSPRRKELLDLLQLPYSIIVSEVEE-------KLNRNFSPEENVQWLAKQK 53

Query: 61  ALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG 120
           A  V++ +P + VIG D  + L      KP D  EA   L R+SG+ H + +A  +    
Sbjct: 54  AKAVADLHPHAIVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAEN 113

Query: 121 KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSI 180
                +    ++  + LSEE I  Y+    K+ +   G+Y I   G      I G Y+S+
Sbjct: 114 HSETFY-DKTEVAFWSLSEEEIWTYIET--KEPMDKAGAYGIQGRGALFVKKIDGDYYSV 170

Query: 181 VGLPIIELINDLK 193
           +GLPI + +  L+
Sbjct: 171 MGLPISKTMRALR 183


>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protein;
           structural genomics, structural genomics consortium,
           SGC, unknown function; 2.00A {Homo sapiens}
          Length = 230

 Score =  129 bits (324), Expect = 5e-31
 Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 20/206 (9%)

Query: 1   MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK 60
           + K ++LAS+S  R+++L N+G++F VV     E+      D +    P   A+  A++K
Sbjct: 2   LHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKL-----DKASFATPYGYAMETAKQK 56

Query: 61  ALEVSNRY------PESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAY 114
           ALEV+NR           VIG D  +++G  I  KPVD  +A + L R+SG++H + +  
Sbjct: 57  ALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGV 116

Query: 115 VLVQNGK-------VLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGI 167
            +V            +       ++   +LSEE +  Y++    + +   G Y I   G 
Sbjct: 117 AIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSG--EPMDKAGGYGIQALGG 174

Query: 168 QLFSSIKGSYFSIVGLPIIELINDLK 193
            L  S+ G + ++VG P+      L 
Sbjct: 175 MLVESVHGDFLNVVGFPLNHFCKQLV 200


>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta
           motif, structural genomics, PSI, protein structure
           initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
          Length = 207

 Score =  114 bits (286), Expect = 1e-26
 Identities = 34/200 (17%), Positives = 69/200 (34%), Gaps = 9/200 (4%)

Query: 1   MIKNIILASSSLSRRKLLQNSG----IQFSVVKPNIDEREMEKKMDFS-ERKRPEKIALI 55
            I+ +I+ +SS  R  +L+         F ++ P+IDE+       F             
Sbjct: 8   EIRTMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADPFELTESIARAKMKA 67

Query: 56  LAEKKALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYV 115
           + EK           +  +  DQ +  G  +  KP+   +    +   SG   R  + Y 
Sbjct: 68  VLEKARQHSPPISGPAIALTFDQVVVKGDEVREKPLSTEQCRSFIASYSGGGVRTVATYA 127

Query: 116 LVQNGKVLRH-HISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLF-SSI 173
           L   G        +  +    K  ++ ++  L +     + S G   ++ E +      I
Sbjct: 128 LCVVGTENVLVAHNETETFFSKFGDDIVERTLER--GACMNSAGGLVVEDEDMSRHVVRI 185

Query: 174 KGSYFSIVGLPIIELINDLK 193
            G+ + + G+    +   L 
Sbjct: 186 VGTSYGVRGMEPAVVEKLLS 205


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 66/152 (43%)

Query: 4   NIILASS---SLSRRKLLQNSGIQFSVVKP-------NIDEREMEK-------KMDFSER 46
           N  L +     +S    L N      V  P       N+  R+ +        ++ FSER
Sbjct: 357 NSHLPAGKQVEIS----LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412

Query: 47  KRPEKIALILAEKKALEVSNRY-PESFVIGCDQTMSLGSSIYHKP-----VDMLE---AE 97
           K              L+ SNR+ P    +         +S +H        D++     +
Sbjct: 413 K--------------LKFSNRFLP----V---------ASPFHSHLLVPASDLINKDLVK 445

Query: 98  KNLLRISGKKHRISSAYVLV---QNGKVLRHH 126
            N +  + K  +I      V    +G  LR  
Sbjct: 446 NN-VSFNAKDIQIP-----VYDTFDGSDLRVL 471



 Score = 36.5 bits (84), Expect = 0.004
 Identities = 38/195 (19%), Positives = 80/195 (41%), Gaps = 56/195 (28%)

Query: 34   EREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTM---SLG-----SS 85
            E+ +     F++   P   AL L EK A E         +I  D T    SLG     +S
Sbjct: 1722 EKGLLSATQFTQ---P---ALTLMEKAAFE---DLKSKGLIPADATFAGHSLGEYAALAS 1772

Query: 86   IYHKPVDMLEAEKNLLRI---SGKKHRIS--------SAY--VLVQNGKVLRHHISVAQL 132
            +     D++  E +L+ +    G   +++        S Y  + +  G+V          
Sbjct: 1773 L----ADVMSIE-SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV---------- 1817

Query: 133  TMYKLSEEFIKFYLNKIGKKA--LLSVGSYQIDKE------GIQLFSSIKG--SYFSIVG 182
                 S+E +++ + ++GK+   L+ + +Y ++ +       ++   ++    ++  +  
Sbjct: 1818 -AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876

Query: 183  LPIIELINDLKIEKV 197
            + IIEL   L +E+V
Sbjct: 1877 IDIIELQKSLSLEEV 1891



 Score = 30.3 bits (68), Expect = 0.26
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 55/140 (39%)

Query: 94  LEAEKNLLR-------ISGKK--HRISSA-YVLVQNGKV------------------LRH 125
           L   K L++       ++ +    + +SA +  V  G                    LR 
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175

Query: 126 HISVAQL-TMYK-LSEEFIKFYLNKIGKKAL--LSVGSYQIDK---EGIQLFSSIKG--- 175
                 L   Y  L  + IKF      +  L  L   +   +K   +G+ +   ++    
Sbjct: 176 ------LYQTYHVLVGDLIKF----SAET-LSELIRTTLDAEKVFTQGLNILEWLENPSN 224

Query: 176 ----SYF-SI-VGLPIIELI 189
                Y  SI +  P+I +I
Sbjct: 225 TPDKDYLLSIPISCPLIGVI 244


>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
           serovar typhimurium STR. unknown function; HET: PO4;
           1.75A {Salmonella enterica subsp} PDB: 3n77_A
          Length = 165

 Score = 28.8 bits (64), Expect = 0.87
 Identities = 5/30 (16%), Positives = 11/30 (36%)

Query: 94  LEAEKNLLRISGKKHRISSAYVLVQNGKVL 123
           L  E    + +  + R     ++  +G  L
Sbjct: 13  LGTENLYFQSNAMRQRTIVCPLIQNDGCYL 42


>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage,
           riken structural genomics/proteomics initiative, RSGI,
           structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB:
           1v5h_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
          Length = 193

 Score = 27.4 bits (60), Expect = 2.4
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 36  EMEKKMDFSERKRPEKIA-LILAEKKALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDML 94
            MEK     E +R E+   L  AE+KA++        +         +G +I  +     
Sbjct: 3   HMEKVPGEMEIERRERSEELSEAERKAVQ------AMWARLYANCEDVGVAILVR---FF 53

Query: 95  EAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMY 135
               +  +   +   +     + ++ ++ +H   V      
Sbjct: 54  VNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNT 94


>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase
           domain and reductase domain, hydrolase, oxidoreductase;
           2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB:
           2d5n_A* 3ex8_A*
          Length = 373

 Score = 27.2 bits (59), Expect = 2.7
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 25/90 (27%)

Query: 31  NIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGC-----DQTMSLGSS 85
           +++E  M             K+AL LA++   +  +       +G       Q + +G  
Sbjct: 12  SMEEYYM-------------KLALDLAKQGEGQTESNPL----VGAVVVKDGQIVGMG-- 52

Query: 86  IYHKPVDMLEAEKNLLRISGKKHRISSAYV 115
             H       AE + + ++G     +  YV
Sbjct: 53  -AHLKYGEAHAEVHAIHMAGAHAEGADIYV 81


>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 701

 Score = 26.5 bits (58), Expect = 4.5
 Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 7/104 (6%)

Query: 31  NIDEREMEKKMDFSER----KRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSI 86
           +  E+   K  +  E         K   +  +   LE+SN      +        L    
Sbjct: 131 SQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNA---LEISSEMGLKILEDVF 187

Query: 87  YHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVA 130
                    + K  LR         +   L+    +     S+ 
Sbjct: 188 PEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSID 231


>1s99_A YKOF; thiamin-binding protein, ACT-domain family, ligand binding
           protein; 1.65A {Bacillus subtilis} SCOP: d.58.48.2 PDB:
           1sbr_A* 1s7h_A
          Length = 200

 Score = 26.3 bits (58), Expect = 5.4
 Identities = 9/52 (17%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 126 HISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSY 177
            I+  + ++Y ++++FI      + K AL +  + ++  +   + + ++GS 
Sbjct: 9   RIAGFRFSLYPMTDDFI-----SVIKSALAATDTSKVWTKTDHISTVLRGSI 55


>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
           influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
           1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
           1ht2_A* 1ned_A
          Length = 174

 Score = 25.8 bits (56), Expect = 7.0
 Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 13/77 (16%)

Query: 67  RYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHH 126
           R     V+G D  +SLG+++                   K  R+ +  VL          
Sbjct: 7   RRNGQVVVGGDGQVSLGNTVMKGNAR-------------KVRRLYNGKVLAGFAGGTADA 53

Query: 127 ISVAQLTMYKLSEEFIK 143
            ++ +L   KL      
Sbjct: 54  FTLFELFERKLEMHQGH 70


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.135    0.361 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,636,537
Number of extensions: 73719
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 15
Length of query: 199
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 111
Effective length of database: 3,559,758
Effective search space: 395133138
Effective search space used: 395133138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)