RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus
Liberibacter asiaticus str. psy62]
(199 letters)
>d2amha1 c.51.4.2 (A:7-207) Maf homologue Tb11.01.5890 {Trypanosoma
brucei [TaxId: 5691]}
Length = 201
Score = 103 bits (257), Expect = 1e-23
Identities = 32/199 (16%), Positives = 73/199 (36%), Gaps = 9/199 (4%)
Query: 2 IKNIILASSSLSRRKLLQNSG----IQFSVVKPNIDEREMEKKMDFSERKR-PEKIALIL 56
I+ +I+ +SS R +L+ F ++ P+IDE+ F + +
Sbjct: 3 IRTMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADPFELTESIARAKMKAV 62
Query: 57 AEKKALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHR-ISSAYV 115
EK + + DQ + G + KP+ + + SG R +++ +
Sbjct: 63 LEKARQHSPPISGPAIALTFDQVVVKGDEVREKPLSTEQCRSFIASYSGGGVRTVATYAL 122
Query: 116 LVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLF-SSIK 174
V + + + + K ++ ++ L + + S G ++ E + I
Sbjct: 123 CVVGTENVLVAHNETETFFSKFGDDIVERTLERG--ACMNSAGGLVVEDEDMSRHVVRIV 180
Query: 175 GSYFSIVGLPIIELINDLK 193
G+ + + G+ + L
Sbjct: 181 GTSYGVRGMEPAVVEKLLS 199
>d1ex2a_ c.51.4.2 (A:) Maf protein {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 102 bits (255), Expect = 2e-23
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 10/193 (5%)
Query: 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK 60
M K +ILAS S R++LL + +S++ ++E+ PE+ LA++K
Sbjct: 1 MTKPLILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFS-------PEENVQWLAKQK 53
Query: 61 ALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG 120
A V++ +P + VIG D + L KP D EA L R+SG+ H + + V +Q
Sbjct: 54 AKAVADLHPHAIVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVIT-AVSIQAE 112
Query: 121 KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSI 180
++ + LSEE I Y+ K+ + G+Y I G I G Y+S+
Sbjct: 113 NHSETFYDKTEVAFWSLSEEEIWTYIET--KEPMDKAGAYGIQGRGALFVKKIDGDYYSV 170
Query: 181 VGLPIIELINDLK 193
+GLPI + + L+
Sbjct: 171 MGLPISKTMRALR 183
>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 536
Score = 29.3 bits (66), Expect = 0.23
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 74 IGCDQTMSLGS---SIYHKPV-DMLE-----AEKNLLRISGKKHRISSAYVLVQNGKVLR 124
IG D+T++ G+ + Y M E ++ LL H + + L +G+ +
Sbjct: 409 IGVDRTVATGTGYTAQYFPENAAMYESLDTCPDELLLFF----HHVPYTHRL-HSGETVI 463
Query: 125 HHI 127
HI
Sbjct: 464 QHI 466
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 27.2 bits (59), Expect = 0.97
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 3 KNIILASSSLSRRKLLQNSGI 23
+I+++ ++ +LL SG+
Sbjct: 251 GEVIVSAGTIGTPQLLLLSGV 271
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 26.4 bits (57), Expect = 1.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 KNIILASSSLSRRKLLQNSGI 23
++LA+ S +L+ SGI
Sbjct: 287 HEVLLAAGSAISPLILEYSGI 307
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 26.1 bits (56), Expect = 2.2
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 3 KNIILASSSLSRRKLLQNSGI 23
+IL++ + ++L SGI
Sbjct: 246 GRVILSAGAFGTSRILFQSGI 266
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF
{Bacillus subtilis [TaxId: 1423]}
Length = 189
Score = 25.9 bits (57), Expect = 2.2
Identities = 9/51 (17%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 127 ISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSY 177
I+ + ++Y ++++FI + K AL + + ++ + + + ++GS
Sbjct: 2 IAGFRFSLYPMTDDFI-----SVIKSALAATDTSKVWTKTDHISTVLRGSI 47
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 25.6 bits (55), Expect = 2.9
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 KNIILASSSLSRRKLLQNSGI 23
++LA+ S +L+ SGI
Sbjct: 281 HEVLLAAGSAVSPTILEYSGI 301
>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia
coli [TaxId: 562]}
Length = 161
Score = 24.8 bits (53), Expect = 5.7
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 95 EAEKNLLRISGKKHRISSAYVLVQNGKVLRHH 126
+A + +R +HR + V GK+L
Sbjct: 17 QASREQMRAQCLRHRATYIVVHDGMGKILVQR 48
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic
substrate-binding protein VCA0807 {Vibrio cholerae
[TaxId: 666]}
Length = 249
Score = 24.2 bits (51), Expect = 8.8
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 136 KLSEEFIKFYLNKIGKKALLSVG 158
+ ++EFI F ++ KK ++ G
Sbjct: 223 EQTKEFIAFLKSESAKKLIVEYG 245
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.361
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 705,815
Number of extensions: 31799
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 17
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)