BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus
Liberibacter asiaticus str. psy62]
(199 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 199
Score = 396 bits (1018), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK 60
MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK
Sbjct: 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK 60
Query: 61 ALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG 120
ALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG
Sbjct: 61 ALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG 120
Query: 121 KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSI 180
KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSI
Sbjct: 121 KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSI 180
Query: 181 VGLPIIELINDLKIEKVID 199
VGLPIIELINDLKIEKVID
Sbjct: 181 VGLPIIELINDLKIEKVID 199
>gi|254780438|ref|YP_003064851.1| pyridoxine 5'-phosphate synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 261
Score = 29.3 bits (64), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 27/127 (21%)
Query: 24 QFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLG 83
QF + NI+ E ++ ER +PE+I L+ + L + +
Sbjct: 67 QFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGW--------------- 111
Query: 84 SSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIK 143
D L+ + L + + H + S L +G H + A+LT + I+
Sbjct: 112 --------DFLQNQALLTKTVARLHNLGSRISLFADGNGNEHSLQAAKLT----GADCIE 159
Query: 144 FYLNKIG 150
Y G
Sbjct: 160 LYTGPYG 166
>gi|254780488|ref|YP_003064901.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 423
Score = 26.2 bits (56), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 135 YKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSY 177
Y + F++ + N KK + + GSY ID+ ++ +I +
Sbjct: 8 YPIWHPFVQHFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWW 50
>gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 324
Score = 25.0 bits (53), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 5 IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEV 64
I + S + R ++Q+S F++ P+I E+ +E KM FS ++ K LE
Sbjct: 50 ITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILE-KMGFSA---------LIRYKFTLET 99
Query: 65 SNRYPESFV 73
+N E F+
Sbjct: 100 ANYSAEQFI 108
>gi|254780383|ref|YP_003064796.1| endonuclease III [Candidatus Liberibacter asiaticus str. psy62]
Length = 227
Score = 25.0 bits (53), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 95 EAEKNLLRISGKKHRISSAYVLVQNGK 121
+ E++LLRI KH+ ++ Y LV +G+
Sbjct: 177 KVEQSLLRIIPPKHQYNAHYWLVLHGR 203
>gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 299
Score = 24.6 bits (52), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 99 NLLRISGKKHRISSAYVLVQNGKVLRHHI-SVAQLTMYKLSEEFI-KFYLN 147
N+L +S ++S Y +VQ GK + H + ++ + S FI F++N
Sbjct: 161 NILAVSECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFIN 211
>gi|254780275|ref|YP_003064688.1| SsrA-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 159
Score = 24.3 bits (51), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 29 KPNIDEREMEKKMDFSERK 47
K N D+RE EKK D+ +K
Sbjct: 133 KKNYDKRETEKKRDWDRQK 151
>gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 511
Score = 23.9 bits (50), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 88 HKPVDMLEAEKNLLRISGKKHRISSAY 114
H PV +E E R+S + ++ S Y
Sbjct: 154 HNPVQWMEEEGYFFRLSAYQDKLLSYY 180
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.135 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,853
Number of Sequences: 1233
Number of extensions: 4906
Number of successful extensions: 20
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 11
length of query: 199
length of database: 328,796
effective HSP length: 70
effective length of query: 129
effective length of database: 242,486
effective search space: 31280694
effective search space used: 31280694
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)