HHsearch alignment for GI: 254780814 and conserved domain: COG1389
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair].
Probab=99.34 E-value=1.9e-10 Score=100.30 Aligned_cols=185 Identities=22% Similarity=0.293 Sum_probs=128.9
Q ss_pred CEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCEEEEEECCC----CEEEEEECCCCCCCCCCC
Q ss_conf 123135420004587154327996325445656755578868-607797579998389----839999768445364077
Q gi|254780814|r 15 IQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES-LEGYADIITVTLNMD----GSCTVSDNGRGIPTDLHK 89 (803)
Q Consensus 15 i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~-~~g~~~~I~V~i~~d----gsisV~dnGrGIPv~~h~ 89 (803)
T Consensus 12 ~re~SvAEFF~kNk~ml-Gf~~p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IP 90 (538)
T COG1389 12 FRELSVAEFFRKNKEML-GFDGPIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIP 90 (538)
T ss_pred HHHCCHHHHHHHCHHHC-CCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHH
T ss_conf 33269999987488861-89973068999999998531656876088876599998547755899993489999856757
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEE-----EEEEEEC--CEEEEEEEECCEECCCCEEE
Q ss_conf 7885001256425011323289860483116752037786326449-----9999978--95999998898364631387
Q gi|254780814|r 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWL-----KLRIKRE--GNIYEMSFINGILDNPLVVT 162 (803)
Q Consensus 90 ~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~-----~v~v~rd--gk~~~q~f~~g~~~~~l~~~ 162 (803)
T Consensus 91 --------kvFGk~LygSKfh~--~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv 160 (538)
T COG1389 91 --------KVFGKMLYGSKFHR--NIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIV 160 (538)
T ss_pred --------HHHHHHHCCCHHHH--HHHCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCHHE
T ss_conf --------89988860232323--44325532424789999987517986699953788862489999951788876200
Q ss_pred -----CCCCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf -----327788870899987788854210008999999997311464169999963
Q gi|254780814|r 163 -----GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213 (803)
Q Consensus 163 -----~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~De 213 (803)
T Consensus 161 ~r~~~~~~~~~hGT~Vel~~~~~~~~~~~q---gi~eYlkrTaiinPhA~I~l~dP 213 (538)
T COG1389 161 ERGEVENPGGWHGTRVELELKGVWYRAKRQ---GIYEYLKRTAIINPHARIVLKDP 213 (538)
T ss_pred ECCCCCCCCCCCCEEEEEEECCCCHHHCCC---CHHHHHHHHHHCCCCEEEEEECC
T ss_conf 002224788877507999955530542224---79999988753387417999889