HHsearch alignment for GI: 254780814 and conserved domain: COG3920
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=96.12 E-value=0.0083 Score=40.91 Aligned_cols=94 Identities=26% Similarity=0.373 Sum_probs=61.0
Q ss_pred CEECCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCEEEEEECC--CC---EEEEEECCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 154327996325445656755578868-60779757999838--98---3999976844536407778850012564250
Q gi|254780814|r 30 MYIGDTDGESGLHHMIYEVLDNAIDES-LEGYADIITVTLNM--DG---SCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103 (803)
Q Consensus 30 mYiG~t~~~~Gl~hlv~EiidNsvDe~-~~g~~~~I~V~i~~--dg---sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L 103 (803)
T Consensus 113 ~~l~~-d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~~~~-------------- 177 (221)
T COG3920 113 VFLDP-DTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEAPL-------------- 177 (221)
T ss_pred EEECH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCCC--------------
T ss_conf 22673-678899999999999889861788899779999998479971799998789898888887--------------
Q ss_pred CCCCCCCCCCCEEECCCCCCEEEEEEECC-CEEEE--EEE-ECCEEEEEEEECC
Q ss_conf 11323289860483116752037786326-44999--999-7895999998898
Q gi|254780814|r 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALS-SWLKL--RIK-REGNIYEMSFING 153 (803)
Q Consensus 104 ~ag~kfd~~~yk~sgGlhGvG~s~vNalS-~~~~v--~v~-rdgk~~~q~f~~g 153 (803)
T Consensus 178 ---------------~~~g~G~~Lv~~lv~~q~~g~~~~~~~~Gt~~~i~~~~~ 216 (221)
T COG3920 178 ---------------SRGGFGLQLVERLVPEQLGGELEDERPDGTEFRLRFPLS 216 (221)
T ss_pred ---------------CCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEEEECC
T ss_conf ---------------899837999999999967972799749977999998864