HHsearch alignment for GI: 254780814 and conserved domain: COG5000

>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].
Probab=90.80  E-value=0.46  Score=27.37  Aligned_cols=33  Identities=15%  Similarity=0.117  Sum_probs=15.2

Q ss_pred             CCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             100001457765435468999999999999999
Q gi|254780814|r  569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLI  601 (803)
Q Consensus       569 ~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l  601 (803)
T Consensus       545 deF~afARmP~p~~e~~dL~~ll~e~~~L~e~~  577 (712)
T COG5000         545 DEFRAFARMPAPKLEKSDLRALLKEVSFLYEIG  577 (712)
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             999987148998777422999999999999626