HHsearch alignment for GI: 254780814 and conserved domain: PRK05559
>PRK05559 DNA topoisomerase IV subunit B; Reviewed.
Probab=100.00 E-value=0 Score=1804.10 Aligned_cols=627 Identities=49% Similarity=0.823 Sum_probs=590.5
Q ss_pred CCCCCCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCC
Q ss_conf 42236786551231354200045871543279963254456567555788686077975799983898399997684453
Q gi|254780814|r 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP 84 (803)
Q Consensus 5 ~~~~~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIP 84 (803)
T Consensus 3 ~~~~~Y~~~~i~~L~glE~Vr~RP~mYIGst~-~~Gl~hi~~EIldNavDe~~~g~~~~I~V~i~~dgsIsV~dnGrGIP 81 (633)
T PRK05559 3 MMTNNYNADSIEVLEGLEPVRKRPGMYIGSTD-TRGLHHLVQEVIDNSVDEALAGHGKKIEVTLHADGSVSVRDNGRGIP 81 (633)
T ss_pred CCCCCCCHHHCEEECCCHHHHCCCCCEECCCC-CCCCEEEEEEEEECHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCC
T ss_conf 20057797778660574676449986656899-98562888776551142765078976999997898499998996545
Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECC
Q ss_conf 64077788500125642501132328986048311675203778632644999999789599999889836463138732
Q gi|254780814|r 85 TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164 (803)
Q Consensus 85 v~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~ 164 (803)
T Consensus 82 v~~h~~~~~~~~ElIft~LhaGgkfd~~~ykvSGGlhGvGasvvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~ 161 (633)
T PRK05559 82 VGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSERLEVEVKRDGKVYRQRFERGEPVTPLEVVGG 161 (633)
T ss_pred CCCCCCCCCCCHHHHEEECCCCCCCCCCCCEEECCCCCCCEEEEEEEECCEEEEEEECCEEEEEEECCCEECCCCCEECC
T ss_conf 51756579761566100204578889985155078776212670873055899999899999999549909888513045
Q ss_pred CCC--CCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCC
Q ss_conf 778--887089998778885421000899999999731146416999996358642101001268835776530035655
Q gi|254780814|r 165 AGN--DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 (803)
Q Consensus 165 ~~~--~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~~l~~~~~~ 242 (803)
T Consensus 162 ~~~~~~~GT~ItF~PD~~iF~~~~~~~d~l~~rl~~~A~l~~gl~I~lnder~~---~~~F~~e~Gi~dyv~~~~~~~~~ 238 (633)
T PRK05559 162 TKGKRKTGTRVRFWPDPKIFDSAKFSPERLKERLRSKAFLCPGLEITLNDERTG---EETFHYENGLKDYLAELNEGKEL 238 (633)
T ss_pred CCCCCCCCEEEEEEECHHHHCCCEECHHHHHHHHHHHHHCCCCCEEEEEECCCC---CEEEECCCCHHHHHHHHHCCCCC
T ss_conf 678788834999998857837725428999999999863279977999824677---34466476199999986179975
Q ss_pred CCCCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 68852036420036999733453177541212222462166677210356888999999999862420001235761343
Q gi|254780814|r 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322 (803)
Q Consensus 243 ~~~~~i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Di 322 (803)
T Consensus 239 i~~~~~~--~~-~~~~veval~~~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~k~i~~y~~k~~~~Kkk-~~i~~~dI 314 (633)
T PRK05559 239 LPVEPFE--GD-EGEAVEWALAWLEGGSENIESYVNLIPTPDGGTHENGFREGLLRALREFAEKRNLLKRG-VKLTAEDV 314 (633)
T ss_pred CCCCEEE--CC-CCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHH
T ss_conf 7864287--55-79759999994478884476568870579998767889989999999999982745566-65788898
Q ss_pred HCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 05721566652137633572100202611110321110268999987400357999877899988775545532110011
Q gi|254780814|r 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 (803)
Q Consensus 323 regl~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar~~a~kar~~~rrK 402 (803)
T Consensus 315 regL~~~Vsv~i~nP~FesQTKekL~s~~~~~~v~~~v~~~l~~~l~~n~~~a~~I~~k~~~~a~~r~~a~k~~~-~~rk 393 (633)
T PRK05559 315 REGLAAVLSVKIPEPQFEGQTKEKLGSREARRFVSGVVKDAFDLWLNQNPELAEKLAEKAIKAAQARLRARKKKE-VRRK 393 (633)
T ss_pred HCCCEEEEEECCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCC
T ss_conf 465326866310498406733200259657767778888999999997989999999999999999999972132-0134
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHHHHHHHC
Q ss_conf 00124676676666555555521799982557543223346544302330056203344305876632366788887625
Q gi|254780814|r 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 (803)
Q Consensus 403 ~~~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~l~~~lG 482 (803)
T Consensus 394 ~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSAgGsak~gRDr~~qailPLRGKiLNv~~a~~~ki~~N~Ei~~l~~alG 473 (633)
T PRK05559 394 KATKKPALPGKLADCTSQDPERTELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEASLDDVLANEEIHDIIVAIG 473 (633)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCEEEEECCCEECCHHHCCHHHHHHCHHHHHHHHHHC
T ss_conf 53346789866613023896744699983467776335221546265300266222353178888762689999999857
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECC-CEEEEECHHHHHH
Q ss_conf 787753321235673738998508888532899999999963077874895999438337887267-1799814578989
Q gi|254780814|r 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLED 561 (803)
Q Consensus 483 ~~~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K-~E~YikDD~EL~~ 561 (803)
T Consensus 474 ~~~g~~-~d~~~LRYgkIiImTDaD~DGsHI~~Llltff~~~~p~Li~~G~vy~~~tPl~kv~~gk~~~~y~~~e~e~~~ 552 (633)
T PRK05559 474 IGPGDS-FDLEDLRYGKIIIMTDADVDGAHIATLLLTFFYRHFPPLVEAGHVYIALPPLYRVDVGKGKTFYALDEEEKEE 552 (633)
T ss_pred CCCCCC-CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCEEEECCHHHHHH
T ss_conf 787876-8701067671799977999768899999999998769988659589973988999938943698588999999
Q ss_pred HHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99850011000014577654354689999999999999998643445799999887421135112357789999999988
Q gi|254780814|r 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 (803)
Q Consensus 562 ~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~~~~~~l~~~ 641 (803)
T Consensus 553 ~~~~~~~~------------------------------------------------------------------------ 560 (633)
T PRK05559 553 LLKKLGKG------------------------------------------------------------------------ 560 (633)
T ss_pred HHHHHHHC------------------------------------------------------------------------
T ss_conf 99986411------------------------------------------------------------------------
Q ss_pred HHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCHHH
Q ss_conf 76531000011002445670599999518530266466774164278999988887751145502765582587399899
Q gi|254780814|r 642 LNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 (803)
Q Consensus 642 l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~i~s~~e 721 (803)
T Consensus 561 -------------------------------------------------------------------------------- 560 (633)
T PRK05559 561 -------------------------------------------------------------------------------- 560 (633)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9999998630676286037777889557223038961340212367988988878656418998762899885244123
Q gi|254780814|r 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800 (803)
Q Consensus 722 l~~~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFIe~NAL~vN 800 (803)
T Consensus 561 -------~~~~k~~i~ryKGLGem~~~ql~et~mdp~~r~l~~v~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~a~~~~ 632 (633)
T PRK05559 561 -------GKKGKVEIQRFKGLGEMNPDQLWETTMDPETRRLLRVTIDDAAETEELVDMLMGKKAEPRRNWIEENGDELD 632 (633)
T ss_pred -------CCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf -------577870368764067799899998725822146999864868899999999828995799999996034146