HHsearch alignment for GI: 254780814 and conserved domain: PRK05644
>PRK05644 gyrB DNA gyrase subunit B; Validated.
Probab=100.00 E-value=0 Score=2108.03 Aligned_cols=723 Identities=58% Similarity=0.949 Sum_probs=686.9
Q ss_pred CCCCCCCCCCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECC
Q ss_conf 98764223678655123135420004587154327996325445656755578868607797579998389839999768
Q gi|254780814|r 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNG 80 (803)
Q Consensus 1 m~~~~~~~~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnG 80 (803)
T Consensus 2 ~~~~~~~~~Y~~~~I~vL~gle~VRkRPgMYiG~t~-~~glhhlv~EvvDNsiDEa~aG~~~~I~V~i~~DgsitV~DnG 80 (725)
T PRK05644 2 ENKEMMENEYDASSIKVLEGLEAVRKRPGMYIGDTG-GRGLHHLVYEVVDNSIDEALAGYCDEIEVTIHADGSVSVTDNG 80 (725)
T ss_pred CHHHHHHCCCCHHHCEECCCCHHHCCCCCCEECCCC-CCCCEEEEEEEEHHHHHHHHCCCCCEEEEEECCCCEEEEEECC
T ss_conf 155475667896448450375755059864656699-9876688986421478798638996799999689829999899
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCE
Q ss_conf 44536407778850012564250113232898604831167520377863264499999978959999988983646313
Q gi|254780814|r 81 RGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160 (803)
Q Consensus 81 rGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~ 160 (803)
T Consensus 81 RGIPvd~h~~~~~~~~E~I~t~LhAGgKFd~~~YkvSGGLHGVGasvVNALS~~~~VeV~RdGk~y~q~f~~G~~~~~l~ 160 (725)
T PRK05644 81 RGIPVDIHPKEGVSAAEVVMTVLHAGGKFDGNSYKVSGGLHGVGVSVVNALSEWLELTVRRDGKIHRQEFERGVPVAPLK 160 (725)
T ss_pred CCCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCEEEEEEEECCEEEEEEEECCCCCCCCE
T ss_conf 76776345777972261300003556689999635316888802032160547089999989999999972897588852
Q ss_pred EECCCCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCC
Q ss_conf 87327788870899987788854210008999999997311464169999963586421010012688357765300356
Q gi|254780814|r 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 (803)
Q Consensus 161 ~~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~~l~~~~ 240 (803)
T Consensus 161 ~ig~~-~k~GT~ItF~PD~~iF~~~~fd~d~L~~RlrelA~Ln~GL~I~l~Der~~~~~~~~f~y~gGi~dyv~~l~~~k 239 (725)
T PRK05644 161 VIGET-DKTGTTVRFWPDPEIFTTTEFDYETLAKRLRELAFLNSGVKITLTDEREGEGKEETFHYEGGIKSFVEYLNRNK 239 (725)
T ss_pred ECCCC-CCCCEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHCCC
T ss_conf 46788-88965999997756617744089999999999972179847998645778776148971476788898862578
Q ss_pred CCCCCCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 55688520364200369997334531775412122224621666772103568889999999998624200012357613
Q gi|254780814|r 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320 (803)
Q Consensus 241 ~~~~~~~i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~ 320 (803)
T Consensus 240 ~~l~~~~i~~~~e~~~i~vEvAlqw~d~~~e~i~SFvN~I~T~eGGTHv~Gfr~aLtr~In~ya~~~~l~Kk~~~~itgd 319 (725)
T PRK05644 240 TPLHPEIIYFEGEKDGIGVEVAMQWNDSYSENVLCFTNNIPTRDGGTHLAGFRAALTRVINDYARKNGLLKKAKVNLTGD 319 (725)
T ss_pred CCCCCCCEEEEEEECCEEEEEEEEECCCCCCEEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 76788855899864780699999854776631455421435588981889999999999999999837543344566567
Q ss_pred HHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 43057215666521376335721002026111103211102689999874003579998778999887755455321100
Q gi|254780814|r 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 (803)
Q Consensus 321 Diregl~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar~~a~kar~~~r 400 (803)
T Consensus 320 DIregL~~vISvki~nPqFegQTKeKLgn~ev~~~V~~~v~e~l~~~l~~np~~ak~Ii~k~~~aa~aR~aa~kare~~r 399 (725)
T PRK05644 320 DVREGLTAVISVKVPDPQFEGQTKTKLGNSEVRPIVESLVNEALSEFLEENPNEAKIIVGKAIEAARAREAARKARELTR 399 (725)
T ss_pred HHHHCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77603079999861698747731030158546788999999889999887979899999999999999999997687652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHHHHHH
Q ss_conf 11001246766766665555555217999825575432233465443023300562033443058766323667888876
Q gi|254780814|r 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 (803)
Q Consensus 401 rK~~~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~l~~~ 480 (803)
T Consensus 400 rK~~~~~~~LPGKL~Dc~skd~~~~ELfiVEGDSAgGsAkqgRdr~~QAIlPLRGKiLNv~ka~~~ki~~N~EI~~li~a 479 (725)
T PRK05644 400 RKSALDSAGLPGKLADCQSKDPAKSELYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARFDKILSSEEIGTLITA 479 (725)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHCCHHHHHHHHH
T ss_conf 02212357898755465568977767999825788863103356574688641672200200679888618799999999
Q ss_pred HCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCEEEEECHHHHH
Q ss_conf 25787753321235673738998508888532899999999963077874895999438337887267179981457898
Q gi|254780814|r 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560 (803)
Q Consensus 481 lG~~~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K~E~YikDD~EL~ 560 (803)
T Consensus 480 lG~g~g~~-fd~~~LRY~kIiIMTDADvDGsHIrtLLlTfF~r~m~~LIe~G~vYiAqPPLyki~~gk~~~Y~~~d~e~~ 558 (725)
T PRK05644 480 LGTGIGRD-FDIDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQEQYLKDDRELD 558 (725)
T ss_pred HCCCCCCC-CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCEEEEECCHHHHH
T ss_conf 67788865-77112774708999789987689999999999999999997593899259615985298148837999999
Q ss_pred HHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99985001100001457765435468999999999999999864344579999988742113511235778999999998
Q gi|254780814|r 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 (803)
Q Consensus 561 ~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~~~~~~l~~ 640 (803)
T Consensus 559 ~~l~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 620 (725)
T PRK05644 559 EYLIELALEGATL------HAIAGEALEKLVKEYRAVRKVIDRLSRRYPRALLEALATNAERELFELR------------ 620 (725)
T ss_pred HHHHHHCCCCCEE------ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCH------------
T ss_conf 9999732056255------2046077899999999999999876430446788887521101223200------------
Q ss_pred HHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCHH
Q ss_conf 87653100001100244567059999951853026646677416427899998888775114550276558258739989
Q gi|254780814|r 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 (803)
Q Consensus 641 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~i~s~~ 720 (803)
T Consensus 621 -----------------------~~~~~~------------------------------------~~~~~~~~~~~~~~~ 641 (725)
T PRK05644 621 -----------------------VERRTH------------------------------------VYVLDHDEQPVSSFE 641 (725)
T ss_pred -----------------------HHHHCC------------------------------------CCCCCCCCCCCCCHH
T ss_conf -----------------------121101------------------------------------122455531247889
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC-
Q ss_conf 9999999863067628603777788955722303896134021236798898887865641899876289988524412-
Q gi|254780814|r 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 (803)
Q Consensus 721 el~~~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFIe~NAL~v- 799 (803)
T Consensus 642 ~~~~~~~~~~~k~~~IqRyKGLGEMnp~qLweTTMdP~~R~L~~V~i~da~~ad~~f~~LMG~~v~~Rr~fI~~na~~v~ 721 (725)
T PRK05644 642 EALDWLLAEGRKGLTIQRYKGLGEMNPEQLWETTMDPEVRRLLQVTIEDAIAADEIFTTLMGDEVEPRREFIEENALDVR 721 (725)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999997305788022276067669789986365830135999870239999999998659995688999999851303
Q ss_pred CCCC
Q ss_conf 3669
Q gi|254780814|r 800 ALDI 803 (803)
Q Consensus 800 NLDI 803 (803)
T Consensus 722 ~lDi 725 (725)
T PRK05644 722 NLDI 725 (725)
T ss_pred HCCC
T ss_conf 3489