HHsearch alignment for GI: 254780814 and conserved domain: TIGR02938

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..

Probab=94.30  E-value=0.053  Score=34.66  Aligned_cols=27  Identities=26%  Similarity=0.601  Sum_probs=15.8

Q ss_pred             EECCEEEEEEEECCEECCCCEEECCCCCCCCEEEEEE
Q ss_conf             9789599999889836463138732778887089998
Q gi|254780814|r  140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL  176 (803)
Q Consensus       140 ~rdgk~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~  176 (803)
T Consensus        83 rkDg~lYLAeLt----vaP------vlneaGeT~hfl  109 (496)
T TIGR02938        83 RKDGELYLAELT----VAP------VLNEAGETTHFL  109 (496)
T ss_pred             CCCCCHHHHHHC----CCC------HHCCCCCCEEEE
T ss_conf             116530022202----020------001468815873