HHsearch alignment for GI: 254780814 and conserved domain: cd00075

>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins.

Probab=97.67  E-value=4.2e-05  Score=58.71  Aligned_cols=80  Identities=34%  Similarity=0.539  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC---EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEE
Q ss_conf             54456567555788686077975799983898---399997684453640777885001256425011323289860483
Q gi|254780814|r   41 LHHMIYEVLDNAIDESLEGYADIITVTLNMDG---SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS  117 (803)
Q Consensus        41 l~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg---sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~s  117 (803)
T Consensus         1 l~~vl~nLl~NAik~~~~-~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~--------if~~f------~~~~~~~~   65 (103)
T cd00075           1 LQQVLLNLLSNAIKHTPE-GGGRITISVERDGDHLEIRVEDNGPGIPEEDLER--------IFERF------SDGSRSRK   65 (103)
T ss_pred             CHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHH--------CCCCC------CCCCCCCC
T ss_conf             969999999999986789-9948999999839999999997799408899976--------06975------01788877


Q ss_pred             CCCCCCEEEEEEECCCEE
Q ss_conf             116752037786326449
Q gi|254780814|r  118 GGLHGVGVSVVNALSSWL  135 (803)
Q Consensus       118 gGlhGvG~s~vNalS~~~  135 (803)
T Consensus        66 ~~g~GlGL~i~~~i~~~~   83 (103)
T cd00075          66 GGGTGLGLSIVKKLVELH   83 (103)
T ss_pred             CCCCCCHHHHHHHHHHHC
T ss_conf             898650599999999988