HHsearch results for GI: 254780814 and protein with PDBid: 1kij_A
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=0 Score=922.93 Aligned_cols=388 Identities=44% Similarity=0.747 Sum_probs=373.5
Q ss_pred CCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf 67865512313542000458715432799632544565675557886860779757999838983999976844536407
Q gi|254780814|r 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH 88 (803)
Q Consensus 9 ~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h 88 (803)
+|+|++|++|+||||||+|||||||||+ ..|||||+|||||||+||+++|||+.|+|+|++||+|||+||||||||++|
T Consensus 2 ~y~~~~i~~L~~le~Vr~RP~mYiGst~-~~gl~~i~~Eil~Na~De~~~~~~~~I~V~i~~dg~isV~ddGrGIPv~~h 80 (390)
T 1kij_A 2 SYDASAIRVLKGLEGVRHRPAMYIGGTG-VEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLM 80 (390)
T ss_dssp -----CCEECCTTHHHHHCTHHHHSCSS-HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSEE
T ss_pred CCCHHHCEECCCCHHHHCCCCCEECCCC-CCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCCEEEEEECCCCEECCCC
T ss_conf 6276879451461176539962655899-872217887666856667436999669999969985999988872664786
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECCCC-C
Q ss_conf 778850012564250113232898604831167520377863264499999978959999988983646313873277-8
Q gi|254780814|r 89 KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167 (803)
Q Consensus 89 ~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~~~-~ 167 (803)
|++++|+||||||+||||||||+++|++||||||||||||||||++|+|+|+|+|+.|+|+|++|++..+++.++.++ +
T Consensus 81 ~~~~~~~~e~i~~~L~tg~nfd~~~~k~sgG~nGvGa~l~NalS~~f~v~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 160 (390)
T 1kij_A 81 PEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRG 160 (390)
T ss_dssp TTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECGGG
T ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHEEEEEEECCEEEEEEEECCCCCCCCEECCCCCCC
T ss_conf 67797101999989845676578875302675764427652325203899980433799998488365772021667889
Q ss_pred CCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 88708999877888542100089999999973114641699999635864210100126883577653003565568852
Q gi|254780814|r 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 (803)
Q Consensus 168 ~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~~~ 247 (803)
++||+|+|+||+++|++..|+++.|..|++++|||+|||++.+.|++.. +...|++++|+.+|+.+++.+.+++++.+
T Consensus 161 ~~gT~I~F~PD~~iF~~~~~~~~~i~~r~~~~a~l~~gl~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (390)
T 1kij_A 161 KTGTRVTFKPDPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHG--KEEVFLDKGGVASFAKALAEGEDLLYEKP 238 (390)
T ss_dssp CCEEEEEEEECHHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGT--EEEEECCTTHHHHHHHHHTTTSCBSCSSC
T ss_pred CCEEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC--CEEEEECCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 9807999995868745663338999888898875338846751016788--02322227626777675304776134421
Q ss_pred EEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCE
Q ss_conf 03642003699973345317754121222246216667721035688899999999986242000123576134305721
Q gi|254780814|r 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327 (803)
Q Consensus 248 i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl~ 327 (803)
++.....+.+.++++++|++++.+.++||||+|+|++|||||+||+.+|+++|++|+++.++.|+.+.+++++|||+||+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SfVN~I~T~~GGTHv~g~~~~i~k~i~~~~~k~~~~k~~~~~i~~~dIk~~l~ 318 (390)
T 1kij_A 239 FLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLY 318 (390)
T ss_dssp EEEEEEETTEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCCTTTTTTTEE
T ss_pred CEECCCCCEEEEEEEEECCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCEE
T ss_conf 01023332035788630379876578988635887999746887999999999999987264344456788889972919
Q ss_pred EEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 566652137633572100202611110321110268999987400357999877899988775545532110
Q gi|254780814|r 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 (803)
Q Consensus 328 ~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar~~a~kar~~~ 399 (803)
+||||+|+||+|+||||++|+|++++..++++++++|..||++||..|+.|+++++++|+||++||||||++
T Consensus 319 ~~Is~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~~~~~l~~n~~~a~~Ivek~l~~a~aR~~akk~re~v 390 (390)
T 1kij_A 319 AVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKARELV 390 (390)
T ss_dssp EEEEEECSSCCBCSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999998789972682128516853788899999999999999797999999999999999999998523249